Citrus Sinensis ID: 020101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MARQVSSRVVRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccEEEccccccHHHHHHHHHHHHcccEEcccccccccEEEccccccccHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccEEEccccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccEEEEEccccHHHHHHHHHHHHHccEEEEEEcccccccEEccEEEEccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccEEEcccccEEEEcccEEEEcccHHHccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MARQVSSRVVRSLYMSseiccgqsrsfttapppapavfvdknTRVICQgitgkngtfhtEQAIEygtkmvggvtpkkggtehlglpvFNTVAEAKAETKANasaiyvpppFAAAAILEAMEAELDLVVCItegipqhdMVRVKAALNnqsktrlvgpncpgvikpgeckigimpgyihkpgrigivsrsgtlTYEAVFQTTAVGlgqstcvgiggdpfngtnfvdCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAgltappgrrmghagaivsggkgtaQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Flexible Loop (DISEMBL)
marqvssrvvRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGItgkngtfhteqAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALnnqsktrlvgpncpgviKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGltappgrrMGHAGAIVSGGKGTAQDKIKTLREAgvtvvespakigAAMLEVFKQRGLTK
Low Complexity Region (SEG)
MARQVSSRVVRSLYMSSEICCGQSRSFTTapppapaVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFaaaaileameaeldlVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTegiiligeiggtaeeDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Disordered region (IsUnstruct)
**********RSLYMSSEICCGQSRSFTTA**PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVS********KIKTLREAGVTVVESPAKIGAAMLEVF*******
Disordered Region (DISOPRED)
*******************************PPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRG***
Disordered Region (DISEMBL)
**********RSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Disordered Region (DISPRO)
***************************TTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARQVSSRVVRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q8LAD2	341	Succinyl-CoA ligase [ADP-	yes	no	0.933	0.906	0.896	1e-162
Q8GTQ9	332	Succinyl-CoA ligase [ADP-	N/A	no	0.987	0.984	0.852	1e-161
P68209	347	Succinyl-CoA ligase [ADP-	no	no	0.996	0.951	0.804	1e-160
Q6DQL1	337	Succinyl-CoA ligase [ADP-	N/A	no	0.987	0.970	0.849	1e-156
Q6ZL94	331	Probable succinyl-CoA lig	yes	no	0.897	0.897	0.909	1e-152
Q4ULQ8	292	Succinyl-CoA ligase [ADP-	yes	no	0.876	0.993	0.711	1e-118
Q1RH56	291	Succinyl-CoA ligase [ADP-	yes	no	0.873	0.993	0.706	1e-118
Q9AKE1	292	Succinyl-CoA ligase [ADP-	yes	no	0.876	0.993	0.697	1e-116
Q92I22	292	Succinyl-CoA ligase [ADP-	yes	no	0.876	0.993	0.701	1e-116
O08371	292	Succinyl-CoA ligase [ADP-	yes	no	0.876	0.993	0.694	1e-115

>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2

 Score =  572 bits (1474), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/309 (89%), Positives = 294/309 (95%)

Query: 23  QSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 82
           QSRSF T PPP  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct: 33  QSRSFGTTPPPPAAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 92

Query: 83  LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRV 142
           LGLPVFNTVAEAKAETKANAS IYVP PFAAAAI+E + AELDL+VCITEGIPQHDMVRV
Sbjct: 93  LGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRV 152

Query: 143 KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTA 202
           KAALN+QSKTRL+GPNCPG+IKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTA
Sbjct: 153 KAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTA 212

Query: 203 VGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT 262
           VGLGQSTCVGIGGDPFNGTNFVDC+ KF  DPQTEGI+LIGEIGGTAEEDAAALIKE+GT
Sbjct: 213 VGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGT 272

Query: 263 EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 322
           +KP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+LR+AGV VVESPAKIGAAM E
Sbjct: 273 DKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFE 332

Query: 323 VFKQRGLTK 331
           +F++RGL K
Sbjct: 333 LFQERGLLK 341

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5

>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Solanum lycopersicum GN=SCOA PE=1 SV=1

 Score =  568 bits (1465), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 284/333 (85%), Positives = 301/333 (90%), Gaps = 6/333 (1%)

Query: 1   MARQVSSRVVR-SLYMSS---EICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGT 56
           MARQ +  +   S  +SS      C +   +  A PPA  VFVDKNTRVICQGITGKNGT
Sbjct: 1   MARQATKLIANLSKKLSSSNPHTRCSEQTVWIGAAPPA--VFVDKNTRVICQGITGKNGT 58

Query: 57  FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116
           FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV EAKAETKANAS IYVPPPFAAAAI
Sbjct: 59  FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASVIYVPPPFAAAAI 118

Query: 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY 176
           +E +EAELDL+VCITEGIPQHDMVRVKAAL  QS+TRL+GPNCPG+IKPGECKIGIMPGY
Sbjct: 119 MEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSRTRLIGPNCPGIIKPGECKIGIMPGY 178

Query: 177 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQT 236
           IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ KFIADPQT
Sbjct: 179 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFIADPQT 238

Query: 237 EGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQ 296
           EGI+LIGEIGGTAEEDAAALIKESGT+KP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQ
Sbjct: 239 EGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQ 298

Query: 297 DKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           DKIK L+EAGVTV ESPAKIG +MLEVFKQRGL
Sbjct: 299 DKIKALKEAGVTVCESPAKIGVSMLEVFKQRGL 331

Solanum lycopersicum (taxid: 4081)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/347 (80%), Positives = 304/347 (87%), Gaps = 17/347 (4%)

Query: 1   MARQVSSRVVRSLYMSSEICCG----------------QSRSFTTAPPPAPAVFVDKNTR 44
           M+RQV+ R++ SL   +  C                  QSRSF + P P  AVFVDKNTR
Sbjct: 1   MSRQVA-RLIGSLSSKARRCSTGGSEVFPSCQSLTSLTQSRSFASDPHPPAAVFVDKNTR 59

Query: 45  VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA 104
           V+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKA+TKANAS 
Sbjct: 60  VLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASV 119

Query: 105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164
           IYVP PFAAAAI+E +EAELDL+VCITEGIPQHDMVRVK ALN+QSKTRL+GPNCPG+IK
Sbjct: 120 IYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIK 179

Query: 165 PGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV 224
           PGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV
Sbjct: 180 PGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV 239

Query: 225 DCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHA 284
           DC+ KF  DPQTEGI+LIGEIGGTAEEDAAALIK SGTEKP+VAFIAGLTAPPGRRMGHA
Sbjct: 240 DCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHA 299

Query: 285 GAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 331
           GAIVSGGKGTAQDKIK+L +AGV VVESPAKIG+AM E+F++RGL K
Sbjct: 300 GAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1

 Score =  551 bits (1419), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/338 (84%), Positives = 306/338 (90%), Gaps = 11/338 (3%)

Query: 1   MARQVSSRVVRSLY---------MSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGIT 51
           MARQ ++R++ +L          MS+     Q R F + PPP PAVFVDKNTRVICQGIT
Sbjct: 1   MARQ-ATRLISNLSTKLNPSSPTMSASPLWHQYRYFGSPPPP-PAVFVDKNTRVICQGIT 58

Query: 52  GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111
           GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK ETKANAS +YVPPPF
Sbjct: 59  GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKVETKANASVVYVPPPF 118

Query: 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG 171
           AAAAI+EAMEAELDLVVCITEGIPQHDMVRVKAAL  Q +TRL+GPNCPG+IKPGECKIG
Sbjct: 119 AAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQLRTRLIGPNCPGIIKPGECKIG 178

Query: 172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFI 231
           IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ +FI
Sbjct: 179 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLERFI 238

Query: 232 ADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGG 291
           ADPQTEGI+LIGEIGGTAEEDAAALIKESGT+KP+VAFIAGLTAPPGRRMGHAGAIVSGG
Sbjct: 239 ADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAPPGRRMGHAGAIVSGG 298

Query: 292 KGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           KGTAQDKIK L+EAGVTV ESPAKIG  ML+VFKQRGL
Sbjct: 299 KGTAQDKIKALKEAGVTVCESPAKIGVTMLDVFKQRGL 336

Solanum lycopersicum (taxid: 4081)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1

 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/297 (90%), Positives = 287/297 (96%)

Query: 33  PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA 92
           P+PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFN+VA
Sbjct: 33  PSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVA 92

Query: 93  EAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT 152
           EAKAETKANAS IYVPPPFAAAAI+EAMEAELDLVVCITEGIPQHDMV+VKAALN QSKT
Sbjct: 93  EAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKT 152

Query: 153 RLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212
           RL+GPNCPG+IKPGECKIGIMPGYIHKPGR+GIVSRSGTLTYEAVFQTTAVGLGQSTCVG
Sbjct: 153 RLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212

Query: 213 IGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAG 272
           IGGDPFNGTNFVDC+ KF+ DPQTEGI+LIGEIGGTAEEDAAA I+ES T+KP+VAFIAG
Sbjct: 213 IGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAG 272

Query: 273 LTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           LTAPPGRRMGHAGAIVSGGKGTAQDKIK LREAGVTVVESPAKIG+ M E+FKQRG+
Sbjct: 273 LTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEIFKQRGM 329

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/291 (71%), Positives = 244/291 (83%), Gaps = 1/291 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++AE+++VVCITEGIP  DMV+VK AL   SKTRL+
Sbjct: 62  AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNFVDC+  F+ D +T+ II+IGEIGG AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
           PPG+RMGHAGAI++GGKG+A+DK++ L+ AGVT+  SPA IG  M ++  +
Sbjct: 241 PPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/290 (70%), Positives = 243/290 (83%), Gaps = 1/290 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ V+K T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG  HL LP++NTV EAK
Sbjct: 2   AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPPPFAA +ILEA++A +++VVCITEGIP  DMVRVK AL   S+TRL+
Sbjct: 62  AKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALVG-SRTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG+I P ECKIGIMPG+IH+ G IGIVSRSGTLTYEAV QTTAVGLGQSTCVGIGG
Sbjct: 121 GPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNFVDC+  F+ D +T+ II+IGEIGG AEE+AA  IK S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
           PPG+RMGHAGAI++GGKG+A+DK++ L+ AGVT+  SPA IG  ML++  
Sbjct: 241 PPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMLDLLN 290

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9AKE1|SUCD_RICTY Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=sucD PE=3 SV=1

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/291 (69%), Positives = 244/291 (83%), Gaps = 1/291 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++A++++VVCITEGIP  DMV+VK AL   SKTRL+
Sbjct: 62  AKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRALIG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGT+FV+C+  F+ D +T+ II+IGEIGG AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
           P  +RMGHAGAI+SGGKG+A+DK++ L+ AGVT+ +SPA IG  ML++  +
Sbjct: 241 PSDKRMGHAGAIISGGKGSAKDKLEALQSAGVTITKSPADIGKTMLDLLNK 291

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3 SV=1

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/291 (70%), Positives = 241/291 (82%), Gaps = 1/291 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++AE+++VVCITEGIP  DMV+VK AL   SKTRL+
Sbjct: 62  AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNFVDC+  F+ D +T+ II+IGEIGG AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
           PPG+RMGHAGAI+ G  G+A+DK++ L+ AGV +  SPA IG  ML++  +
Sbjct: 241 PPGKRMGHAGAIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|O08371|SUCD_RICPR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii (strain Madrid E) GN=sucD PE=3 SV=1

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/291 (69%), Positives = 242/291 (83%), Gaps = 1/291 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+NTV EAK
Sbjct: 2   AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A+T ANAS IYVPP FAA +ILEA++A++++VVCITEGIP  DM++VK AL   SKTRL+
Sbjct: 62  AKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRALIG-SKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTA GLGQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGT+FVDC+  F+ D +T+ II+IGEIGG+AEEDAA  IK+S  +KPIV+FIAG+TA
Sbjct: 181 DPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITA 240

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
           P  +RMGHAGAI+SGGKG+A+DK++ L+ AGV +  SPA IG  ML++  +
Sbjct: 241 PADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNK 291

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2166756	341	AT5G23250 [Arabidopsis thalian	0.996	0.967	0.754	9.1e-132
UNIPROTKB|Q8GTQ9	332	SCOA "Succinyl-CoA ligase [ADP	0.885	0.882	0.839	6.4e-131
UNIPROTKB|Q6DQL1	337	Q6DQL1 "Succinyl-CoA ligase [A	0.885	0.869	0.829	9.3e-130
TAIR|locus:2150773	347	AT5G08300 [Arabidopsis thalian	0.933	0.890	0.783	1.7e-128
DICTYBASE|DDB_G0289325	315	scsA "succinate-CoA ligase (GD	0.879	0.923	0.646	1.8e-101
RGD|619821	346	Suclg1 "succinate-CoA ligase,	0.879	0.841	0.642	6.2e-101
MGI|MGI:1927234	346	Suclg1 "succinate-CoA ligase,	0.879	0.841	0.636	7.1e-100
UNIPROTKB|F1MZ38	346	SUCLG1 "Succinyl-CoA ligase [A	0.903	0.864	0.629	2.4e-99
UNIPROTKB|Q58DR8	346	SUCLG1 "Succinyl-CoA ligase [A	0.903	0.864	0.629	3.1e-99
UNIPROTKB|E2R0Y5	346	SUCLG1 "Uncharacterized protei	0.885	0.846	0.638	3.9e-99

TAIR|locus:2166756 AT5G23250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 258/342 (75%), Positives = 276/342 (80%)

Query:     1 MARQVSSRVVRSLYMSSEICCG-----------QSRSFTTXXXXXXXVFVDKNTRVICQG 49
             M+RQV+ R++ SL  S   C G           QSRSF T       VFVDKNTRVICQG
Sbjct:     1 MSRQVT-RLLGSLRHSGGGCSGSSKVCSLTSLVQSRSFGTTPPPPAAVFVDKNTRVICQG 59

Query:    50 ITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109
             ITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNTVAEAKAETKANAS IYVP 
Sbjct:    60 ITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPA 119

Query:   110 PFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECK 169
             PF               +VCITEGIPQHDMVRVKAALN+QSKTRL+GPNCPG+IKPGECK
Sbjct:   120 PFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECK 179

Query:   170 IGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTK 229
             IGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ K
Sbjct:   180 IGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEK 239

Query:   230 FIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVS 289
             F  DPQT               DAAALIKE+GT+KP+VAFIAGLTAPPGRRMGHAGAIVS
Sbjct:   240 FFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTDKPVVAFIAGLTAPPGRRMGHAGAIVS 299

Query:   290 GGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 331
             GGKGTAQDKIK+LR+AGV VVESPAKIGAAM E+F++RGL K
Sbjct:   300 GGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFELFQERGLLK 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q8GTQ9 SCOA "Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial" [Solanum lycopersicum (taxid:4081)]

 Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
 Identities = 246/293 (83%), Positives = 255/293 (87%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV EAKA
Sbjct:    39 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKA 98

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             ETKANAS IYVPPPF               +VCITEGIPQHDMVRVKAAL  QS+TRL+G
Sbjct:    99 ETKANASVIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSRTRLIG 158

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD
Sbjct:   159 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 218

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
             PFNGTNFVDC+ KFIADPQT               DAAALIKESGT+KP+VAFIAGLTAP
Sbjct:   219 PFNGTNFVDCLEKFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAP 278

Query:   277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
             PGRRMGHAGAIVSGGKGTAQDKIK L+EAGVTV ESPAKIG +MLEVFKQRGL
Sbjct:   279 PGRRMGHAGAIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQRGL 331

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

UNIPROTKB|Q6DQL1 Q6DQL1 "Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial" [Solanum lycopersicum (taxid:4081)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 243/293 (82%), Positives = 253/293 (86%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 
Sbjct:    44 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKV 103

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             ETKANAS +YVPPPF               VVCITEGIPQHDMVRVKAAL  Q +TRL+G
Sbjct:   104 ETKANASVVYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQLRTRLIG 163

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD
Sbjct:   164 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 223

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
             PFNGTNFVDC+ +FIADPQT               DAAALIKESGT+KP+VAFIAGLTAP
Sbjct:   224 PFNGTNFVDCLERFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAP 283

Query:   277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
             PGRRMGHAGAIVSGGKGTAQDKIK L+EAGVTV ESPAKIG  ML+VFKQRGL
Sbjct:   284 PGRRMGHAGAIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVTMLDVFKQRGL 336

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

TAIR|locus:2150773 AT5G08300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 242/309 (78%), Positives = 259/309 (83%)

Query:    23 QSRSFTTXXXXXXXVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 82
             QSRSF +       VFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct:    38 QSRSFASDPHPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 97

Query:    83 LGLPVFNTVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRV 142
             LGLPVFN+VAEAKA+TKANAS IYVP PF               +VCITEGIPQHDMVRV
Sbjct:    98 LGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRV 157

Query:   143 KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTA 202
             K ALN+QSKTRL+GPNCPG+IKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTA
Sbjct:   158 KHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTA 217

Query:   203 VGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT 262
             VGLGQSTCVGIGGDPFNGTNFVDC+ KF  DPQT               DAAALIK SGT
Sbjct:   218 VGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGT 277

Query:   263 EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 322
             EKP+VAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK+L +AGV VVESPAKIG+AM E
Sbjct:   278 EKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYE 337

Query:   323 VFKQRGLTK 331
             +F++RGL K
Sbjct:   338 LFQERGLLK 346

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0289325 scsA "succinate-CoA ligase (GDP-forming) alpha subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 188/291 (64%), Positives = 222/291 (76%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG +HL LPVFNTV EAK 
Sbjct:    22 VLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFNTVKEAKE 81

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
              T ANA+ IYVPPP                VVCITEGIPQ DMV+VK  LN Q+KTRL+G
Sbjct:    82 ATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIG 141

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+IKPGECKIGIMPG+IHKPG+IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGGD
Sbjct:   142 PNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGD 201

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
             PFNGTNF+DC+  F  DPQT               +AA  + ++ T+KP+V+FIAGL+AP
Sbjct:   202 PFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSFIAGLSAP 261

Query:   277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327
             PGRRMGHAGAI+SGGKG A  KI+ L+ AGVTV  SPAK+G  +L+   ++
Sbjct:   262 PGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNEK 312

GO:0016020 "membrane" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=TAS

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IEA;IDA

GO:0048037 "cofactor binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|619821 Suclg1 "succinate-CoA ligase, alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 189/294 (64%), Positives = 222/294 (75%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFNTV EAK 
Sbjct:    50 IYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKE 109

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct:   110 KTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIG 169

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+I PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS C+GIGGD
Sbjct:   170 PNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGD 229

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE-KPIVAFIAGL 273
             PFNGTNF+DC+  F+ DP T               +AA  +KE  SG + KP+V+FIAG+
Sbjct:   230 PFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGI 289

Query:   274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327
             TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  M + F++R
Sbjct:   290 TAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEKR 343

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045244 "succinate-CoA ligase complex (GDP-forming)" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0048037 "cofactor binding" evidence=IEA

MGI|MGI:1927234 Suclg1 "succinate-CoA ligase, GDP-forming, alpha subunit" [Mus musculus (taxid:10090)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 187/294 (63%), Positives = 222/294 (75%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFNTV EAK 
Sbjct:    50 IYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKE 109

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q  TRL+G
Sbjct:   110 KTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIG 169

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS C+GIGGD
Sbjct:   170 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGD 229

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE-KPIVAFIAGL 273
             PFNGT+F+DC+  F+ DP T               +AAA +KE  SG + KP+V+FIAG+
Sbjct:   230 PFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGI 289

Query:   274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327
             TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R
Sbjct:   290 TAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKR 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=ISO

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006104 "succinyl-CoA metabolic process" evidence=ISO

GO:0006105 "succinate metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045244 "succinate-CoA ligase complex (GDP-forming)" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|F1MZ38 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 192/305 (62%), Positives = 224/305 (73%)

Query:    26 SFTTXXXXXXXVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL 85
             S+TT       ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGL
Sbjct:    42 SYTTSRKH---LYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGL 98

Query:    86 PVFNTVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAA 145
             PVFNTV EAK +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  
Sbjct:    99 PVFNTVKEAKEQTGATASVIYVPPPFAAAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHK 158

Query:   146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
             L  Q KTRLVGPNCPGVI PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGL
Sbjct:   159 LLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGL 218

Query:   206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE 263
             GQS CVGIGGDPFNGT+F DC+  F+ DP T               +AA  +K+  SG +
Sbjct:   219 GQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPK 278

Query:   264 -KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 322
              KP+V+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  M +
Sbjct:   279 AKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYK 338

Query:   323 VFKQR 327
              F++R
Sbjct:   339 EFEKR 343

GO:0005886 "plasma membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q58DR8 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 192/305 (62%), Positives = 224/305 (73%)

Query:    26 SFTTXXXXXXXVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL 85
             S+TT       ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGL
Sbjct:    42 SYTTSRKH---LYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGL 98

Query:    86 PVFNTVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAA 145
             PVFNTV EAK +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  
Sbjct:    99 PVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHK 158

Query:   146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
             L  Q KTRLVGPNCPGVI PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGL
Sbjct:   159 LLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGL 218

Query:   206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE 263
             GQS CVGIGGDPFNGT+F DC+  F+ DP T               +AA  +K+  SG +
Sbjct:   219 GQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPK 278

Query:   264 -KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 322
              KP+V+FIAGLTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  M +
Sbjct:   279 AKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYK 338

Query:   323 VFKQR 327
              F++R
Sbjct:   339 EFEKR 343

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

UNIPROTKB|E2R0Y5 SUCLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 189/296 (63%), Positives = 222/296 (75%)

Query:    37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
             ++VDKNT+VICQG TGK GTFH++QA++YGT++VGG TP KGG  HLGLPVFNTV EAK 
Sbjct:    50 LYVDKNTKVICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGKTHLGLPVFNTVKEAKE 109

Query:    97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             ET A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct:   110 ETGATASVIYVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMVRVKHKLLRQGKTRLIG 169

Query:   157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
             PNCPG+I PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct:   170 PNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 229

Query:   217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKE--SGTE-KPIVAFIAGL 273
             PFNGT+F+DC+  F+ DP T               +AA  +K+  SG + KP+V+FIAGL
Sbjct:   230 PFNGTDFIDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPVVSFIAGL 289

Query:   274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
             TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R L
Sbjct:   290 TAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEKRKL 345

GO:0005886 "plasma membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0003878 "ATP citrate synthase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P68209	SUCA1_ARATH	6, ., 2, ., 1, ., 5	0.8040	0.9969	0.9510	no	no
Q9WUM5	SUCA_MOUSE	6, ., 2, ., 1, ., 5	0.7060	0.8851	0.8468	yes	no
Q1RH56	SUCD_RICBR	6, ., 2, ., 1, ., 5	0.7068	0.8731	0.9931	yes	no
Q8CPH4	SUCD_STAES	6, ., 2, ., 1, ., 5	0.6156	0.8821	0.9668	yes	no
O08371	SUCD_RICPR	6, ., 2, ., 1, ., 5	0.6941	0.8761	0.9931	yes	no
P80865	SUCD_BACSU	6, ., 2, ., 1, ., 5	0.6530	0.8821	0.9733	yes	no
Q6ZL94	SUCA_ORYSJ	6, ., 2, ., 1, ., 5	0.9090	0.8972	0.8972	yes	no
Q8GTQ9	SUCA1_SOLLC	6, ., 2, ., 1, ., 5	0.8528	0.9879	0.9849	N/A	no
Q51567	SUCD_PSEAE	6, ., 2, ., 1, ., 5	0.6597	0.8640	0.9694	yes	no
Q8NX01	SUCD_STAAW	6, ., 2, ., 1, ., 5	0.6326	0.8821	0.9668	yes	no
Q5HPU4	SUCD_STAEQ	6, ., 2, ., 1, ., 5	0.6190	0.8821	0.9668	yes	no
Q9YGD2	SUCA_COLLI	6, ., 2, ., 1, ., 5	0.7060	0.8851	0.9575	N/A	no
Q6DQL1	SUCA2_SOLLC	6, ., 2, ., 1, ., 5	0.8491	0.9879	0.9703	N/A	no
P0AGE9	SUCD_ECOLI	6, ., 2, ., 1, ., 5	0.6620	0.8700	0.9965	N/A	no
O19069	SUCA_PIG	6, ., 2, ., 1, ., 5	0.7128	0.8851	0.8468	yes	no
P53400	SUCA2_TRIVA	6, ., 2, ., 1, ., 4	0.5892	0.8821	0.9449	N/A	no
P53401	SUCA3_TRIVA	6, ., 2, ., 1, ., 4	0.5858	0.8821	0.9449	N/A	no
P66866	SUCD_STAAM	6, ., 2, ., 1, ., 5	0.6326	0.8821	0.9668	yes	no
O13750	SUCA_SCHPO	6, ., 2, ., 1, ., 5	0.6472	0.8700	0.8700	yes	no
P53596	SUCA_CAEEL	6, ., 2, ., 1, ., 5	0.6955	0.8640	0.8881	yes	no
Q8LAD2	SUCA2_ARATH	6, ., 2, ., 1, ., 5	0.8964	0.9335	0.9061	yes	no
Q7U0Z0	SUCD_MYCBO	6, ., 2, ., 1, ., 5	0.4849	0.8640	0.9438	yes	no
P13086	SUCA_RAT	6, ., 2, ., 1, ., 5	0.7094	0.8851	0.8468	yes	no
P53597	SUCA_HUMAN	6, ., 2, ., 1, ., 5	0.7128	0.8851	0.8468	yes	no
P71558	SUCD_MYCTU	6, ., 2, ., 1, ., 5	0.4849	0.8640	0.9438	yes	no
Q5HGI6	SUCD_STAAC	6, ., 2, ., 1, ., 5	0.6326	0.8821	0.9668	yes	no
Q58DR8	SUCA_BOVIN	6, ., 2, ., 1, ., 5	0.6970	0.9093	0.8699	yes	no
Q92I22	SUCD_RICCN	6, ., 2, ., 1, ., 5	0.7010	0.8761	0.9931	yes	no
O26663	SUCD_METTH	6, ., 2, ., 1, ., 5	0.5535	0.8338	0.9419	yes	no
P45102	SUCD_HAEIN	6, ., 2, ., 1, ., 5	0.6344	0.8700	0.9829	yes	no
P53598	SUCA_YEAST	6, ., 2, ., 1, ., 5	0.5593	0.8700	0.8753	yes	no
O28098	SUCD2_ARCFU	6, ., 2, ., 1, ., 5	0.5432	0.8640	0.9965	yes	no
Q6GHI9	SUCD_STAAR	6, ., 2, ., 1, ., 5	0.6326	0.8821	0.9668	yes	no
P53591	SUCD_COXBU	6, ., 2, ., 1, ., 5	0.6445	0.8640	0.9727	yes	no
P09143	SUCD_THETH	6, ., 2, ., 1, ., 5	0.5428	0.8398	0.9652	yes	no
Q9P727	SUCA_NEUCR	6, ., 2, ., 1, ., 5	0.6346	0.9214	0.9159	N/A	no
P36967	SUCA_DICDI	6, ., 2, ., 1, ., 5	0.7128	0.9033	0.9492	yes	no
Q4ULQ8	SUCD_RICFE	6, ., 2, ., 1, ., 5	0.7113	0.8761	0.9931	yes	no
Q9AKE1	SUCD_RICTY	6, ., 2, ., 1, ., 5	0.6975	0.8761	0.9931	yes	no
P0AGF0	SUCD_ECOL6	6, ., 2, ., 1, ., 5	0.6620	0.8700	0.9965	yes	no
P0AGF1	SUCD_ECO57	6, ., 2, ., 1, ., 5	0.6620	0.8700	0.9965	N/A	no
O67547	SUCD_AQUAE	6, ., 2, ., 1, ., 5	0.5945	0.8731	0.9475	yes	no
Q6G9W7	SUCD_STAAS	6, ., 2, ., 1, ., 5	0.6326	0.8821	0.9668	yes	no
Q58643	SUCD_METJA	6, ., 2, ., 1, ., 5	0.5107	0.8368	0.9421	yes	no
P99070	SUCD_STAAN	6, ., 2, ., 1, ., 5	0.6326	0.8821	0.9668	yes	no
P53399	SUCA1_TRIVA	6, ., 2, ., 1, ., 4	0.5892	0.8821	0.9449	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.998
4th Layer	6.2.1.5	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
PLN00125	300	PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi	0.0
PTZ00187	317	PTZ00187, PTZ00187, succinyl-CoA synthetase alpha	0.0
PRK05678	291	PRK05678, PRK05678, succinyl-CoA synthetase subuni	0.0
COG0074	293	COG0074, SucD, Succinyl-CoA synthetase, alpha subu	1e-168
TIGR01019	286	TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a	1e-161
pfam00549	128	pfam00549, Ligase_CoA, CoA-ligase	2e-35
pfam02629	96	pfam02629, CoA_binding, CoA binding domain	3e-33
PLN02522	608	PLN02522, PLN02522, ATP citrate (pro-S)-lyase	2e-31
smart00881	100	smart00881, CoA_binding, CoA binding domain	4e-31
COG1042	598	COG1042, COG1042, Acyl-CoA synthetase (NDP forming	6e-10
pfam13607	138	pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like	1e-09
TIGR02717	447	TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synt	6e-09
PRK06091	555	PRK06091, PRK06091, membrane protein FdrA; Validat	7e-04
cd07022	214	cd07022, S49_Sppa_36K_type, Signal peptide peptida	0.002

>gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha

 Score =  548 bits (1414), Expect = 0.0
 Identities = 283/299 (94%), Positives = 289/299 (96%)

Query: 31  PPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 90
             P PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT
Sbjct: 1   ASPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 60

Query: 91  VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQS 150
           VAEAKAETKANAS IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALN QS
Sbjct: 61  VAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120

Query: 151 KTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 210
           KTRL+GPNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC
Sbjct: 121 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 180

Query: 211 VGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFI 270
           VGIGGDPFNGTNFVDC+ KF+ DPQTEGIILIGEIGGTAEEDAAA IKESGTEKP+VAFI
Sbjct: 181 VGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFI 240

Query: 271 AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           AGLTAPPGRRMGHAGAIVSGGKGTAQDKIK LREAGVTVVESPAKIG AMLEVFK+RGL
Sbjct: 241 AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL 299

Length = 300

>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional

 Score =  539 bits (1391), Expect = 0.0
 Identities = 232/309 (75%), Positives = 267/309 (86%), Gaps = 6/309 (1%)

Query: 22  GQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE 81
            ++RS T+AP     V+V+KNT+VICQGITGK GTFHTEQAIEYGTKMVGGV PKK GT 
Sbjct: 13  FRARSSTSAP----RVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTT 68

Query: 82  HL--GLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDM 139
           HL  GLPVF TV EAK  T A+AS IYVPPP AA+AI+EA+EAE+ LVVCITEGIPQHDM
Sbjct: 69  HLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDM 128

Query: 140 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQ 199
           V+VK AL +Q+KTRL+GPNCPG+IKPGECKIGIMPG+IHK G+IGIVSRSGTLTYEAV Q
Sbjct: 129 VKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIGIVSRSGTLTYEAVAQ 188

Query: 200 TTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE 259
           TTAVGLGQSTCVGIGGDPFNGTNF+DC+  F+ DP+TEGIILIGEIGGTAEE+AA  IK 
Sbjct: 189 TTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN 248

Query: 260 SGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAA 319
           +  +KP+V+FIAG+TAPPGRRMGHAGAI+SGGKGTA  KI+ L  AGV VV+SPA++G  
Sbjct: 249 NPIKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKT 308

Query: 320 MLEVFKQRG 328
           MLEV K++G
Sbjct: 309 MLEVMKKKG 317

Length = 317

>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated

 Score =  511 bits (1318), Expect = 0.0
 Identities = 197/292 (67%), Positives = 237/292 (81%), Gaps = 2/292 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           ++ ++K+T+VI QGITGK GTFHTEQ + YGT +VGGVTP KGGT  LGLPVFNTVAEA 
Sbjct: 2   SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAV 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
             T ANAS IYVPPPFAA AILEA++A +DL+VCITEGIP  DM+ VKA L  + KTRL+
Sbjct: 62  EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLE-RKKTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG+I PGECKIGIMPG+IHK GR+G+VSRSGTLTYEAV Q T +G GQSTCVGIGG
Sbjct: 121 GPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP NGTNF+D +  F  DP+TE I++IGEIGG+AEE+AA  IK + T KP+V +IAG+TA
Sbjct: 181 DPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVT-KPVVGYIAGVTA 239

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 327
           PPG+RMGHAGAI+SGGKGTA++K + L  AGV V  +P++IG  + EV K  
Sbjct: 240 PPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291

Length = 291

>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

 Score =  468 bits (1206), Expect = e-168
 Identities = 195/293 (66%), Positives = 230/293 (78%), Gaps = 1/293 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           ++ ++K+T+VI QGITGK GTFHTEQ + YGTK+VGGVTP KGG   LGLPVFNTV EA 
Sbjct: 2   SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAV 61

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
            ET ANAS I+VPPPFAA AILEA++A + LVV ITEGIP  DM+ +K     +  TRL+
Sbjct: 62  KETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAR-EKGTRLI 120

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG+I PGECKIGIMPG I+KPG IGIVSRSGTLTYEAV Q T  GLGQST +GIGG
Sbjct: 121 GPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGG 180

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP  GT+F+D +  F ADP+TE I++IGEIGG AEE+AA  IK + T KP+VA+IAG TA
Sbjct: 181 DPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRTA 240

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRG 328
           P G+RMGHAGAIVSGGKGTA+ KI  L  AGV V E+PA++G  +LEV K R 
Sbjct: 241 PEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGRQ 293

Length = 293

>gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit

 Score =  452 bits (1164), Expect = e-161
 Identities = 191/287 (66%), Positives = 233/287 (81%), Gaps = 2/287 (0%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DK+T+VI QGITG  G+FHTEQ + YGT +VGGVTP KGGT  LGLPVF++V EA  
Sbjct: 1   ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVE 60

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           ET ANAS I+VP PFAA AI EA++A ++L+VCITEGIP HDM++VK  +   S TRL+G
Sbjct: 61  ETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEE-SGTRLIG 119

Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPG+I PGECKIGIMPG+IHKPG +GIVSRSGTLTYEAV Q T  G GQSTCVGIGGD
Sbjct: 120 PNCPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGD 179

Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
           P NGT+F+D +  F  DP+TE I++IGEIGG+AEE+AA  IK++ + KP+V FIAG TAP
Sbjct: 180 PVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMS-KPVVGFIAGATAP 238

Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 323
           PG+RMGHAGAI+SGGKGTA+ KI+ L  AGVTVV+SP+ IG  + E+
Sbjct: 239 PGKRMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285

This model describes succinyl-CoA synthetase alpha subunits but does not discriminate between GTP-specific and ATP-specific reactions. The model is designated as subfamily rather than equivalog for that reason. ATP citrate lyases appear to form an outgroup [Energy metabolism, TCA cycle]. Length = 286

>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase

 Score =  124 bits (314), Expect = 2e-35
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 186 VSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI 245
           +   GTL  EA+      G G    + +GGD F  T  +D +    ADP+ + I+L   +
Sbjct: 1   LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60

Query: 246 G-GTAEEDAAALIKE----SGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK 300
           G G  E+ A  L+K        E P+VA + G  A P  R   A A+   G   A    +
Sbjct: 61  GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAKALAESGVLIASSNNQ 120

Query: 301 TLREAGV 307
            LR AG 
Sbjct: 121 ALRAAGA 127

This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. Length = 128

>gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain

 Score =  118 bits (297), Expect = 3e-33
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 40  DKNTRVICQGITGKN--GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE 97
           DK+T+V   G  G    G +H  Q + YG KMV GV P+KGGTE  G+PV+ +V E + +
Sbjct: 1   DKDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEED 60

Query: 98  TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133
           T  + + I VP PFA  AI E ++A +  +V IT G
Sbjct: 61  TGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITPG 96

This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 96

>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase

 Score =  123 bits (311), Expect = 2e-31
 Identities = 83/261 (31%), Positives = 132/261 (50%), Gaps = 14/261 (5%)

Query: 79  GTEHLGLPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQ 136
           G E + +PV  ++  A KA   A+    +     AAA+ +EA++   + +V  I EG+P+
Sbjct: 57  GQEEIAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPE 116

Query: 137 HDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYI--------HKPGRIGIVSR 188
            D  ++ A     +K  ++GP   G I+ G  KIG   G +        ++PG +G VS+
Sbjct: 117 SDTKQLIAYARANNKV-VIGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSK 175

Query: 189 SGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGT 248
           SG ++ E       V  G    + IGGD F G+   D V +F   PQ + I+++GE+GG 
Sbjct: 176 SGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGR 235

Query: 249 AEEDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGAIVSGGKGTAQDKIKTLREA 305
            E      +K+    KP+VA+++G  A       + GHAGA   G   +AQ K K L++A
Sbjct: 236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDA 295

Query: 306 GVTVVESPAKIGAAMLEVFKQ 326
           G  V  S   + AA+ E F++
Sbjct: 296 GAIVPTSFEALEAAIKETFEK 316

Length = 608

>gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain

 Score =  112 bits (283), Expect = 4e-31
 Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 3/100 (3%)

Query: 38  FVDKNTRVICQGITGKNGTFHTEQAI---EYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
            ++ NT V   G +G  G+F         EYGTK VGGV P K G +  G+PV+++VAEA
Sbjct: 1   LLNPNTSVAVVGASGNLGSFGLAVMRNLLEYGTKFVGGVYPGKVGPKVDGVPVYDSVAEA 60

Query: 95  KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI 134
             ET  + + I+VP   A  AI EA+EA +  +V ITEGI
Sbjct: 61  PEETGVDVAVIFVPAEAAPDAIDEAIEAGIKGIVVITEGI 100

This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 100

>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 29/263 (11%)

Query: 63  IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA 122
           +EYG   +  V PK    E LG+  + +VA+       + + I VP       + E  E 
Sbjct: 34  LEYGQGKIYPVNPKYD--EVLGVKAYTSVADLPDA--PDLAVIVVPAKVVPEIVHELGEK 89

Query: 123 ELDLVVCITEGIPQ-----HDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIM---- 173
            +   + I+ G  +      ++ +       +   R++GPNC G+I P    IG+     
Sbjct: 90  GVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINP---IIGLNATFD 146

Query: 174 PGYIH-KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA 232
           P +   + G    VS+SG +++  +      G+G S  V +G          D +     
Sbjct: 147 PVFGLGRGGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAADRD--ESDLLEYLAD 204

Query: 233 DPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRM-GHAGAIVSGG 291
           DP+T+ I L  E      +   A        KPI+A  AG +    +    H G++    
Sbjct: 205 DPRTKAIGLYIEGVKDGRKFLNAARAAERK-KPIIALKAGRSEAGAKAAASHTGSLAG-- 261

Query: 292 KGTAQDKIKT--LREAGVTVVES 312
                D+      ++AGV  VES
Sbjct: 262 ----SDEAYDAAFKQAGVIRVES 280

Length = 598

>gnl|CDD|205785 pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like flavodoxin domain

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)

Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG--TNFVDCVTKFIADPQTE 237
           PG + +VS+SG L    +      G+G S  V +G    N    +F D +     DP+T 
Sbjct: 1   PGGVALVSQSGALGAALLDWAARRGIGFSHFVSLG----NEADVDFADLLDYLADDPETR 56

Query: 238 GIIL-IGEIGGTAEEDAAALI---KESGTEKPIVAFIAGLTAPPGRRMG--HAGAIVSGG 291
            I+L +  I      D    +   + +  +KP+V   +G +   G R    H GA+   G
Sbjct: 57  VILLYLEGIR-----DGRRFLRAARRAARKKPVVVLKSGRS-EAGARAAASHTGALA--G 108

Query: 292 KGTAQDKIKTLREAGVTVVESP 313
                D     R+AGV  V+  
Sbjct: 109 SDAVYDAA--FRQAGVIRVDDL 128

This domain contains the catalytic domain from Succinyl-CoA ligase alpha subunit and other related enzymes. A conserved histidine is involved in phosphoryl transfer. Length = 138

>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP forming), alpha domain

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 20/258 (7%)

Query: 63  IEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121
           IE G K  +  V PK G  E LG+  + +V E       + + I VP  +    + E  E
Sbjct: 31  IEGGYKGKIYPVNPKAG--EILGVKAYPSVLEIPDPV--DLAVIVVPAKYVPQVVEECGE 86

Query: 122 AELDLVVCITEG-----IPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY 176
             +   V IT G         ++ +    +  +   RL+GPNC G+I             
Sbjct: 87  KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPT 146

Query: 177 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQT 236
           + K G I  +S+SG L    +      G+G S  V +G       +  D +     DP T
Sbjct: 147 MPKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDT 204

Query: 237 EGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGT 294
           + I+L  E G           +E   +KPIV   +G +   G +    H GA+   G   
Sbjct: 205 KVILLYLE-GIKDGRKFLKTAREISKKKPIVVLKSGTS-EAGAKAASSHTGALA--GSDE 260

Query: 295 AQDKIKTLREAGVTVVES 312
           A D     ++AGV   +S
Sbjct: 261 AYDAA--FKQAGVIRADS 276

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference , one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. Length = 447

>gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN 158
           AN + I V   +AA    +A++  L+ V+  ++ +   D +R+K     + K  LV GP+
Sbjct: 118 ANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTLEDEIRLKT--RAREKGLLVMGPD 174

Query: 159 CPGVIKPGECKIGIMP---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           C      G   I   P     +   G IG++  SGT   E   Q    G G +  +G+GG
Sbjct: 175 C------GTAMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGG 228

Query: 216 DPFN----GTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIKESGTEKPIVAFI 270
              +    G + +  +    AD ++E I  + +    A        +K +G  KP+VA  
Sbjct: 229 RDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINAMKATG--KPVVALF 286

Query: 271 AGLTAPPGRRMG 282
            G T P   R  
Sbjct: 287 LGYT-PAVARDE 297

Length = 555

>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 231 IADPQTEGIILI-----GEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           +ADP    I+L      GE+ G  E   A  I+ +   KPIVAF+ GL A
Sbjct: 38  LADPDVRAIVLDIDSPGGEVAGVFE--LADAIRAARAGKPIVAFVNGLAA 85

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	100.0
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	100.0
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	100.0
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	100.0
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	100.0
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	100.0
PLN02522	608	ATP citrate (pro-S)-lyase	100.0
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	100.0
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	100.0
PRK06091	555	membrane protein FdrA; Validated	100.0
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	100.0
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	99.89
COG1832	140	Predicted CoA-binding protein [General function pr	99.81
KOG1254	600	consensus ATP-citrate lyase [Energy production and	99.72
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	99.6
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	99.51
COG2344	211	AT-rich DNA-binding protein [General function pred	99.4
TIGR00036	266	dapB dihydrodipicolinate reductase.	99.4
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	99.33
PLN02775	286	Probable dihydrodipicolinate reductase	99.3
PRK00048	257	dihydrodipicolinate reductase; Provisional	99.24
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.16
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	99.14
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	98.93
PRK11579	346	putative oxidoreductase; Provisional	98.86
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.8
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.75
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.71
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.67
PRK10206	344	putative oxidoreductase; Provisional	98.65
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.64
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.54
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.36
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.35
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.17
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	98.07
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.04
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	98.04
PRK06349	426	homoserine dehydrogenase; Provisional	97.98
PRK06270	341	homoserine dehydrogenase; Provisional	97.97
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.94
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.93
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.93
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.91
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.89
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.88
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.86
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.86
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.77
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.73
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.73
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.73
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.71
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.68
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.64
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.63
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.61
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.59
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.59
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.58
PRK08374	336	homoserine dehydrogenase; Provisional	97.57
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.55
PLN02256	304	arogenate dehydrogenase	97.55
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.54
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.54
PRK06091	555	membrane protein FdrA; Validated	97.52
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.51
PRK07680	273	late competence protein ComER; Validated	97.49
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.47
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	97.44
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.43
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.39
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.38
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	97.37
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.37
PLN02688	266	pyrroline-5-carboxylate reductase	97.36
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.33
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.31
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.29
PLN02712	667	arogenate dehydrogenase	97.27
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.26
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.24
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.23
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.18
PRK08655	437	prephenate dehydrogenase; Provisional	97.12
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.08
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.08
PLN02712	667	arogenate dehydrogenase	97.07
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.07
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.07
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.05
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.04
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.98
PRK14046	392	malate--CoA ligase subunit beta; Provisional	96.92
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.91
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.9
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.89
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.89
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.87
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.86
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.85
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	96.84
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	96.84
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.82
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.8
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.76
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.76
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.75
PRK07417	279	arogenate dehydrogenase; Reviewed	96.73
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.73
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.73
PRK08818	370	prephenate dehydrogenase; Provisional	96.71
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.71
PLN02383	344	aspartate semialdehyde dehydrogenase	96.71
PRK06444	197	prephenate dehydrogenase; Provisional	96.67
PRK06545	359	prephenate dehydrogenase; Validated	96.67
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.66
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	96.65
PRK06436	303	glycerate dehydrogenase; Provisional	96.65
PRK08507	275	prephenate dehydrogenase; Validated	96.64
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.63
PRK06392	326	homoserine dehydrogenase; Provisional	96.61
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.6
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.59
PRK08605	332	D-lactate dehydrogenase; Validated	96.56
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.55
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.53
PLN02858	1378	fructose-bisphosphate aldolase	96.52
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.48
PRK05225	487	ketol-acid reductoisomerase; Validated	96.47
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.44
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.44
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.43
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	96.37
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.37
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.36
PRK07574	385	formate dehydrogenase; Provisional	96.35
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.35
PRK12480	330	D-lactate dehydrogenase; Provisional	96.32
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.3
PLN03139	386	formate dehydrogenase; Provisional	96.29
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.29
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	96.22
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.19
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.15
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	96.12
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.12
PLN02858	1378	fructose-bisphosphate aldolase	96.1
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.09
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.05
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.04
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	96.04
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.02
PRK13243	333	glyoxylate reductase; Reviewed	95.98
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.94
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	95.9
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.9
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.85
PRK06932	314	glycerate dehydrogenase; Provisional	95.81
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.8
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	95.8
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.78
CHL00194	317	ycf39 Ycf39; Provisional	95.78
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.76
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.7
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	95.67
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.66
COG2910	211	Putative NADH-flavin reductase [General function p	95.62
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.56
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.56
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.46
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.35
PLN02928	347	oxidoreductase family protein	95.31
PLN00016	378	RNA-binding protein; Provisional	95.31
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.3
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.28
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.25
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.23
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.2
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	95.12
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.06
PRK06487	317	glycerate dehydrogenase; Provisional	94.98
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	94.97
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.87
TIGR03013	442	EpsB_2 sugar transferase, PEP-CTERM system associa	94.86
PF13727	175	CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.	94.82
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.79
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.78
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.74
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.72
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.67
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.6
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	94.59
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.59
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.47
PRK06813	346	homoserine dehydrogenase; Validated	94.45
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	94.42
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.41
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	94.35
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.35
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.34
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	94.29
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.25
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	94.24
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	94.22
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	94.19
PRK05865	854	hypothetical protein; Provisional	94.16
PRK08223	287	hypothetical protein; Validated	94.15
COG1810	224	Uncharacterized protein conserved in archaea [Func	94.15
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.12
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.1
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.09
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	94.05
PLN02235	423	ATP citrate (pro-S)-lyase	94.04
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.03
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.96
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.86
COG0565	242	LasT rRNA methylase [Translation, ribosomal struct	93.85
PLN03209	576	translocon at the inner envelope of chloroplast su	93.84
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.82
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	93.78
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	93.65
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.51
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.5
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.5
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.48
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	93.45
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.42
PLN02214	342	cinnamoyl-CoA reductase	93.42
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	93.31
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	93.08
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.07
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.07
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	93.04
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	92.97
PRK09414	445	glutamate dehydrogenase; Provisional	92.9
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	92.89
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.87
PLN02240	352	UDP-glucose 4-epimerase	92.86
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	92.77
PRK10675	338	UDP-galactose-4-epimerase; Provisional	92.71
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.69
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	92.69
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.63
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	92.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.59
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.58
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	92.56
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.35
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	92.34
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.34
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.33
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	92.31
PRK08328	231	hypothetical protein; Provisional	92.24
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	92.2
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.17
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.1
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	91.99
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.95
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	91.91
PRK08618	325	ornithine cyclodeaminase; Validated	91.9
PLN02583	297	cinnamoyl-CoA reductase	91.88
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	91.86
PRK12320	699	hypothetical protein; Provisional	91.84
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	91.82
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	91.79
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	91.74
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	91.66
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.57
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	91.53
PRK06179	270	short chain dehydrogenase; Provisional	91.49
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	91.4
PTZ00117	319	malate dehydrogenase; Provisional	91.37
PRK14851	679	hypothetical protein; Provisional	91.36
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	91.34
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.26
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.23
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	91.22
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	91.16
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	91.08
PLN02306	386	hydroxypyruvate reductase	90.92
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.86
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	90.84
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	90.8
PRK14030	445	glutamate dehydrogenase; Provisional	90.77
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	90.73
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.71
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	90.62
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.62
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.46
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	90.3
PLN02896	353	cinnamyl-alcohol dehydrogenase	90.24
COG3804	350	Uncharacterized conserved protein related to dihyd	90.14
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	90.13
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	90.04
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	89.97
PLN02166	436	dTDP-glucose 4,6-dehydratase	89.96
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	89.95
PRK14852	989	hypothetical protein; Provisional	89.93
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	89.73
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	89.72
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	89.7
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	89.67
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	89.6
PRK06046	326	alanine dehydrogenase; Validated	89.58
PTZ00082	321	L-lactate dehydrogenase; Provisional	89.58
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.53
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	89.52
PRK14031	444	glutamate dehydrogenase; Provisional	89.51
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.5
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.47
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	89.42
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	89.32
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.28
PLN02700	377	homoserine dehydrogenase family protein	88.92
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	88.76
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	88.69
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	88.66
COG3268	382	Uncharacterized conserved protein [Function unknow	88.58
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	88.47
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	88.44
PLN02494	477	adenosylhomocysteinase	88.44
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.32
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	88.27
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	88.15
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	88.13
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	88.12
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	88.11
COG0300	265	DltE Short-chain dehydrogenases of various substra	88.07
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	88.06
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	87.89
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	87.86
PRK10669	558	putative cation:proton antiport protein; Provision	87.71
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	87.63
PLN02572	442	UDP-sulfoquinovose synthase	87.6
PRK10949	618	protease 4; Provisional	87.54
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	87.5
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.45
PTZ00325	321	malate dehydrogenase; Provisional	87.42
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	87.41
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	87.37
PLN02206	442	UDP-glucuronate decarboxylase	87.33
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	87.27
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	87.22
PLN02427	386	UDP-apiose/xylose synthase	87.15
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.04
PRK06223	307	malate dehydrogenase; Reviewed	86.95
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	86.89
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	86.88
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	86.75
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.7
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.7
PLN02650	351	dihydroflavonol-4-reductase	86.65
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.63
PRK05562	223	precorrin-2 dehydrogenase; Provisional	86.42
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	86.37
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	86.35
PRK10538	248	malonic semialdehyde reductase; Provisional	86.32
PLN02778	298	3,5-epimerase/4-reductase	86.29
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	86.26
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	86.13
PRK12483	521	threonine dehydratase; Reviewed	86.13
PRK04148	134	hypothetical protein; Provisional	86.12
PRK08177	225	short chain dehydrogenase; Provisional	86.11
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	85.98
PTZ00075	476	Adenosylhomocysteinase; Provisional	85.97
PRK09496	453	trkA potassium transporter peripheral membrane com	85.84
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	85.74
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	85.62
PLN02591	250	tryptophan synthase	85.6
PRK13940	414	glutamyl-tRNA reductase; Provisional	85.39
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	85.38
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	85.37
PLN02653	340	GDP-mannose 4,6-dehydratase	85.33
PRK05993	277	short chain dehydrogenase; Provisional	85.19
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	85.15
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.03
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	84.98
PLN00203	519	glutamyl-tRNA reductase	84.95
PRK05086	312	malate dehydrogenase; Provisional	84.91
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	84.9
PRK09291	257	short chain dehydrogenase; Provisional	84.65
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	84.61
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	84.42
PRK09496	453	trkA potassium transporter peripheral membrane com	84.36
PRK07411	390	hypothetical protein; Validated	84.27
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.1
PLN02550	591	threonine dehydratase	84.1
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	84.07
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	83.95
PRK12828	239	short chain dehydrogenase; Provisional	83.9
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	83.9
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	83.73
PRK07340	304	ornithine cyclodeaminase; Validated	83.7
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	83.64
PRK06182	273	short chain dehydrogenase; Validated	83.51
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	83.43
PRK10433	228	putative RNA methyltransferase; Provisional	83.43
PRK09186	256	flagellin modification protein A; Provisional	83.42
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	83.4
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	83.35
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	83.34
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	83.21
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	83.17
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	83.15
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	83.1
PRK08264	238	short chain dehydrogenase; Validated	83.08
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.07
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	82.78
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	82.76
PRK10949	618	protease 4; Provisional	82.65
PRK09224	504	threonine dehydratase; Reviewed	82.59
PRK06141	314	ornithine cyclodeaminase; Validated	82.57
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	82.46
PRK12827	249	short chain dehydrogenase; Provisional	82.4
KOG2733	423	consensus Uncharacterized membrane protein [Functi	82.38
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	82.36
TIGR01746	367	Thioester-redct thioester reductase domain. It has	82.32
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	82.23
PRK12829	264	short chain dehydrogenase; Provisional	82.22
PLN00106	323	malate dehydrogenase	82.21
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	82.04
PLN02477	410	glutamate dehydrogenase	82.02
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.79
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	81.74
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	81.72
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	81.65
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	81.61
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	81.54
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	81.52
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.51
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	81.5
PLN02260	668	probable rhamnose biosynthetic enzyme	81.47
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	81.46
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	81.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.23
PLN02260	668	probable rhamnose biosynthetic enzyme	81.14
PRK08291	330	ectoine utilization protein EutC; Validated	81.12
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	81.03
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	80.81
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	80.61
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	80.57
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	80.51
PRK06841	255	short chain dehydrogenase; Provisional	80.41
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.36
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	80.25
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	80.22
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	80.03
PRK07454	241	short chain dehydrogenase; Provisional	80.03

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=100.00  E-value=5.4e-70  Score=515.21  Aligned_cols=292  Identities=93%  Similarity=1.362  Sum_probs=266.8

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .+|.+++.+|+|.|.+|+.|..+.+.+.+||.+++++|||++.++++.|+|||++++|+|+.+++|++++++|++.++++
T Consensus         6 ~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~a   85 (300)
T PLN00125          6 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAA   85 (300)
T ss_pred             eEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHHH
Confidence            67888999999999999999999999999999999999999766899999999999999984348999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCCEEEEecChHHHH
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTY  194 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~  194 (331)
                      +++|.++|+|.++|+|+||+|.+.+++...+++++|+|++||||+|++||. +++..+.+ ..+++|+||+|||||+++.
T Consensus        86 l~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~  164 (300)
T PLN00125         86 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPG-YIHKPGRIGIVSRSGTLTY  164 (300)
T ss_pred             HHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccceeecCC-CCCCCCcEEEEeCCccHHH
Confidence            999999999999999999999875554444338999999999999999998 55555433 3467999999999999999


Q ss_pred             HHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCC
Q 020101          195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT  274 (331)
Q Consensus       195 ~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs  274 (331)
                      ++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|++|+|++|+.++++++|+++++++||||+||+|||
T Consensus       165 ~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~Grs  244 (300)
T PLN00125        165 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLT  244 (300)
T ss_pred             HHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEecCC
Confidence            99999999999999999999994449999999999999999999999999988888999999999988999999999999


Q ss_pred             C-CCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhcCC
Q 020101          275 A-PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL  329 (331)
Q Consensus       275 ~-~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~~~  329 (331)
                      + . |+++||||+++++++|++++++++|||+|+++++|++||+++++.+||.+||
T Consensus       245 ~~~-g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~~~~  299 (300)
T PLN00125        245 APP-GRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL  299 (300)
T ss_pred             CCC-CCCccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence            7 5 8889999999755568999999999999999999999999999999998886

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=100.00  E-value=7.2e-70  Score=513.49  Aligned_cols=288  Identities=66%  Similarity=1.073  Sum_probs=260.7

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|.+++.||+|.|.+++.|+.++++|.++||+.++||||+..++++.|+|||++++|+|+.++||++++++|++.+++++
T Consensus         3 ~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l   82 (291)
T PRK05678          3 ILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADAI   82 (291)
T ss_pred             eEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHH
Confidence            56688899999999999999999999999998778999992128999999999999999821299999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCCEEEEecChHHHHH
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYE  195 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~~  195 (331)
                      ++|.++|+|.++|+|+||++++.++|.+.+ +++|+|++||||+|++||. +++..| +...+++|+||+|||||+++.+
T Consensus        83 ~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a-~~~girvlGPNc~Gi~~~~~~~~~~~-~~~~~~~G~valiSQSGal~~~  160 (291)
T PRK05678         83 LEAIDAGIDLIVCITEGIPVLDMLEVKAYL-ERKKTRLIGPNCPGIITPGECKIGIM-PGHIHKKGRVGVVSRSGTLTYE  160 (291)
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCCcccccccceeeec-CCCCCCCCCEEEEeccHHHHHH
Confidence            999999999999999999987777888888 8999999999999999998 544444 3334679999999999999999


Q ss_pred             HHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCC
Q 020101          196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA  275 (331)
Q Consensus       196 ~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~  275 (331)
                      +++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++.+++++|+++. ++||||+||+||++
T Consensus       161 ~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~-~~KPVV~lk~Grs~  239 (291)
T PRK05678        161 AVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKAN-VTKPVVGYIAGVTA  239 (291)
T ss_pred             HHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHc-CCCCEEEEEecCCC
Confidence            99999999999999999999974579999999999999999999999999888777888888765 58999999999999


Q ss_pred             CCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101          276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  327 (331)
Q Consensus       276 ~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~  327 (331)
                      +.|+++|||||+++.++|++++++++|||+|+++++|++||+++++++|+.|
T Consensus       240 ~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~  291 (291)
T PRK05678        240 PPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL  291 (291)
T ss_pred             CCCCcccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence            3387899999998677799999999999999999999999999999999865

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=100.00  E-value=2.3e-69  Score=512.62  Aligned_cols=299  Identities=77%  Similarity=1.224  Sum_probs=278.8

Q ss_pred             CCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec--CcccccCHHHhhhcCCCCEE
Q 020101           26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        26 ~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~--G~p~y~sl~dl~~~~~iDla  103 (331)
                      -|++|   +..+|.+++.+|+|.|.+|+.|+.+.+.+++||.++|++|||++.|+++.  |+|||++++|+++++++|++
T Consensus        16 ~~~~~---~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~a   92 (317)
T PTZ00187         16 RSSTS---APRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADAS   92 (317)
T ss_pred             HHhcc---CccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEE
Confidence            36677   88999999999999999999999999999999999999999999888999  99999999999986669999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCE
Q 020101          104 AIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRI  183 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~v  183 (331)
                      ++++|+..++++++||+++|++.++++|+||++.+..++++++++++|++++||||+|+++|..+..++.|...+++|+|
T Consensus        93 vI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~V  172 (317)
T PTZ00187         93 VIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKI  172 (317)
T ss_pred             EEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccccCCcCCCCCCCE
Confidence            99999999999999999999999999999999998888777664578999999999999999854566677666789999


Q ss_pred             EEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCC
Q 020101          184 GIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTE  263 (331)
Q Consensus       184 alisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~  263 (331)
                      |+|||||+++.++++++.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|+||+|++|+.++++++|+++.+++
T Consensus       173 giVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~  252 (317)
T PTZ00187        173 GIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIK  252 (317)
T ss_pred             EEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999987899999999999999999999999999999999999999986689


Q ss_pred             CCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101          264 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  327 (331)
Q Consensus       264 KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~  327 (331)
                      ||||+||+|||++.|+++|||||+++...|+++.++++|+|+|+++++|++||.++++.+++.+
T Consensus       253 KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~  316 (317)
T PTZ00187        253 KPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK  316 (317)
T ss_pred             CcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence            9999999999984488899999999777899999999999999999999999999999988765

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=100.00  E-value=1.5e-68  Score=503.47  Aligned_cols=283  Identities=64%  Similarity=1.064  Sum_probs=258.0

Q ss_pred             cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      |.+++.+|+|.|.+|+.|+.+.+++..+|++++++|||+..++++.|+|||+|++|+|+..+||++++++|++.++++++
T Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~   81 (286)
T TIGR01019         2 LLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIF   81 (286)
T ss_pred             eecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHH
Confidence            44778899999999999999999999999999999999944489999999999999998323899999999999999999


Q ss_pred             HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCCEEEEecChHHHHHH
Q 020101          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEA  196 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~~~  196 (331)
                      +|.++|+|.++++|+||+|.++++|.+.+ +++|+|++||||+|++||. +++.+|.+ ..+++|+||+|||||+++.++
T Consensus        82 e~~~~Gvk~avIis~Gf~e~~~~~l~~~a-~~~girilGPNc~Giin~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~~~  159 (286)
T TIGR01019        82 EAIDAGIELIVCITEGIPVHDMLKVKRYM-EESGTRLIGPNCPGIITPGECKIGIMPG-HIHKPGNVGIVSRSGTLTYEA  159 (286)
T ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCceEEcccccceeeccc-cCCCCCcEEEEeccHHHHHHH
Confidence            99999999999999999998778898888 8999999999999999998 66666644 346799999999999999999


Q ss_pred             HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCC
Q 020101          197 VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP  276 (331)
Q Consensus       197 ~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~  276 (331)
                      ++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|++|++++++++|++++ ++||||++|+||+++
T Consensus       160 ~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~-~~KPVV~lk~Grs~~  238 (286)
T TIGR01019       160 VHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQN-MSKPVVGFIAGATAP  238 (286)
T ss_pred             HHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhc-CCCCEEEEEecCCCC
Confidence            9999999999999999999975579999999999999999999999999888888888888774 689999999999983


Q ss_pred             CCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHH
Q 020101          277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV  323 (331)
Q Consensus       277 ~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~  323 (331)
                      .|+++|||||+++.+.|++++++++|||+|+++++|++||+|+++.+
T Consensus       239 ~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~  285 (286)
T TIGR01019       239 PGKRMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI  285 (286)
T ss_pred             ccccccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence            27779999999866668999999999999999999999999999864

ATP citrate lyases appear to form an outgroup.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=100.00  E-value=4.9e-64  Score=501.28  Aligned_cols=272  Identities=26%  Similarity=0.361  Sum_probs=247.2

Q ss_pred             cccccCCCCeEEEEEcCCC---CCCcHHHHHHHHcCCe-EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVFVDKNTRVICQGITG---KNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasg---k~G~~~~~~l~~~g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |+.||.|++  |+|||+|.   ++|+.++++++++||+ -+++|||++  +++.|+|||++++|+|+  .+|++++++|+
T Consensus         1 l~~l~~p~s--iavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~   74 (447)
T TIGR02717         1 LEHLFNPKS--VAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPA   74 (447)
T ss_pred             CccccCCCE--EEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCH
Confidence            467898887  56699995   4577888999999984 445999998  79999999999999998  79999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhH------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGR  182 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~------~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~  182 (331)
                      +.+++++++|.++|++.+|++++||+|.+      .+++.+++ +++|++++||||+|++||. +++.+|.+. .+++|+
T Consensus        75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a-~~~girvlGPnc~G~~~~~~~l~~~~~~~-~~~~G~  152 (447)
T TIGR02717        75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIA-RKYGMRLLGPNCLGIINTHIKLNATFAPT-MPKKGG  152 (447)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHH-HHcCCEEEecCeeeEecCCCCeeeecCCC-CCCCCC
Confidence            99999999999999999999999998743      35777777 8999999999999999998 777777554 367999


Q ss_pred             EEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-
Q 020101          183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-  261 (331)
Q Consensus       183 valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-  261 (331)
                      ||+|||||+++.++++|+.++|+|||++||+||++  |+++.|+|+||.+||+|++|++|+|+    ++|+++|++++| 
T Consensus       153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E~----~~~~~~f~~aa~~  226 (447)
T TIGR02717       153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLEG----IKDGRKFLKTARE  226 (447)
T ss_pred             EEEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEecC----CCCHHHHHHHHHH
Confidence            99999999999999999999999999999999998  99999999999999999999999998    568999999886 


Q ss_pred             --CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101          262 --TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  324 (331)
Q Consensus       262 --~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~  324 (331)
                        ++||||+||+||++. |++  .||||+++    |++++|+++|||+|+++++|++||+++++.+-
T Consensus       227 a~~~KPVv~~k~Grs~~-g~~aa~sHtgala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~l~  288 (447)
T TIGR02717       227 ISKKKPIVVLKSGTSEA-GAKAASSHTGALA----GSDEAYDAAFKQAGVIRADSIEELFDLARLLS  288 (447)
T ss_pred             HcCCCCEEEEecCCChh-hhhhhhhcccccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHHHh
Confidence              689999999999998 765  79999999    89999999999999999999999999999643

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=2.4e-54  Score=397.22  Aligned_cols=290  Identities=67%  Similarity=1.076  Sum_probs=278.1

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .+|.+|+.+|+|.|.+|++|+.+.+.++++|+++|++|+|...|.++.|+|+|.+++|..++++.|+.++|+|+..+.+.
T Consensus         2 ~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aada   81 (293)
T COG0074           2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAADA   81 (293)
T ss_pred             ceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHH
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYE  195 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~  195 (331)
                      +.|++++|++.++++|+|++..|+.++.+++ ++.|++++||||.|++.|..+.+++.|.+.+++|+|++||.||++..+
T Consensus        82 i~EAida~i~liv~ITEgIP~~D~~~~~~~a-~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLTyE  160 (293)
T COG0074          82 ILEAIDAGIKLVVIITEGIPVLDMLELKRYA-REKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYE  160 (293)
T ss_pred             HHHHHhCCCcEEEEEeCCCCHHHHHHHHHHH-HhcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecCcchHHH
Confidence            9999999999999999999999999999998 889999999999999999988899999998999999999999999999


Q ss_pred             HHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 020101          196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLT  274 (331)
Q Consensus       196 ~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs  274 (331)
                      +.+...+.|+|.|+.|++|++.+++++|.|+|+.|++||+|++|+|..|.+|+.+..+++|+++ . .+||||+|-+|++
T Consensus       161 ~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~t  239 (293)
T COG0074         161 AVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRT  239 (293)
T ss_pred             HHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccC
Confidence            9999999999999999999999999999999999999999999999999999999999999998 5 4599999999999


Q ss_pred             CCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101          275 APPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  327 (331)
Q Consensus       275 ~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~  327 (331)
                      ++.|++++|+||+.+...|+++.+.++|+.+|+.+++++.++.+.++.+++.+
T Consensus       240 ap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~  292 (293)
T COG0074         240 APEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR  292 (293)
T ss_pred             CCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence            98888999999999888899999999999999999999999999999888765

>PLN02522 ATP citrate (pro-S)-lyase

Probab=100.00  E-value=5.1e-53  Score=429.36  Aligned_cols=284  Identities=28%  Similarity=0.448  Sum_probs=239.6

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCC-------eEEEEeCCCCC-------CceecCcccccCHHHhhhcC-CC
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPKKG-------GTEHLGLPVFNTVAEAKAET-KA  100 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~-------~iv~~VnP~~~-------g~~i~G~p~y~sl~dl~~~~-~i  100 (331)
                      .+|.+ .++.++.|-    ....++.|++++|       .+.+.|+|..+       |+++.|+|+|++++|..+++ ++
T Consensus         5 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~   79 (608)
T PLN02522          5 QLFSR-TTQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA   79 (608)
T ss_pred             eeecC-CceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence            45644 455567774    5667778887764       25566899652       34577999999999998775 79


Q ss_pred             CEEEEecChhhHHHHH-HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCC-----
Q 020101          101 NASAIYVPPPFAAAAI-LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMP-----  174 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v-~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~-----  174 (331)
                      |+.++|+|+..+.+.+ ++|.++|++.++|+|+||+|.+++++.+.+ +++|++++||||+|+++|..++++..+     
T Consensus        80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~A-r~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~  158 (608)
T PLN02522         80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYA-RANNKVVIGPATVGGIQAGAFKIGDTAGTLDN  158 (608)
T ss_pred             cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHH-HHcCCEEECCCCCeeEccCccccccccccccc
Confidence            9999999998877655 555567999999999999999999999998 899999999999999999854454433     


Q ss_pred             ---CCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 020101          175 ---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (331)
Q Consensus       175 ---~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (331)
                         ...+++|+||+|||||+++.++++++.++|+|||++||+||+.++|+++.|+|+||.+||+|++|++|+|..   .+
T Consensus       159 ~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiG---g~  235 (608)
T PLN02522        159 IIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELG---GR  235 (608)
T ss_pred             ccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecC---ch
Confidence               133579999999999999999999999999999999999999977899999999999999999999999943   46


Q ss_pred             HHHHHHHHhC---CCCCEEEEEeCCCCC---CCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101          252 DAAALIKESG---TEKPIVAFIAGLTAP---PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  325 (331)
Q Consensus       252 ~~~~f~~a~r---~~KPVvv~k~Grs~~---~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~  325 (331)
                      ++++|+++++   ++||||+||+||+++   .++++|||||+++++++++++++++|||+|+++++|++||.++++.+|+
T Consensus       236 ~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~  315 (608)
T PLN02522        236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFE  315 (608)
T ss_pred             hHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHH
Confidence            7788887765   789999999999994   2456999999997666677999999999999999999999999999998


Q ss_pred             hcC
Q 020101          326 QRG  328 (331)
Q Consensus       326 ~~~  328 (331)
                      +|-
T Consensus       316 ~~~  318 (608)
T PLN02522        316 KLV  318 (608)
T ss_pred             HHH
Confidence            763

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=2.1e-50  Score=361.57  Aligned_cols=311  Identities=73%  Similarity=1.174  Sum_probs=289.0

Q ss_pred             ccccccCCCCCCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhh
Q 020101           16 SSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK   95 (331)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~   95 (331)
                      +.-+|--.+..|+.|   +..++.+|..+|++.|.+||.|.++.+..++||.++|++|||+..|.+.+|.|+|.|++|..
T Consensus        15 ~~~~~~~~~s~y~~T---~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~   91 (329)
T KOG1255|consen   15 SLGILRVFKSLYNKT---ISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAK   91 (329)
T ss_pred             Ccchhhhhcchhhhh---hhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHH
Confidence            444444446678888   67789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCC
Q 020101           96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPG  175 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~  175 (331)
                      ++..+|.-+|++||..+...++|++++-|+.++++|+|+++.|+.++......+..-|++||||.||++|.++.++.+|.
T Consensus        92 ~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg  171 (329)
T KOG1255|consen   92 KETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPG  171 (329)
T ss_pred             HhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeeccccc
Confidence            98899999999999999999999999999999999999999999988876656777899999999999999999999999


Q ss_pred             CCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH
Q 020101          176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA  255 (331)
Q Consensus       176 ~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~  255 (331)
                      ...++|.|++||.||.+..+......+-|+|-|.+|.+|++.+++.+|-|.|+.|.+||+|+.|+|..|.+|+.+.++.+
T Consensus       172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~  251 (329)
T KOG1255|consen  172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAE  251 (329)
T ss_pred             ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHH
Confidence            98999999999999999999988888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhcCC
Q 020101          256 LIKESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL  329 (331)
Q Consensus       256 f~~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~~~  329 (331)
                      |+++..   ..||||-+.+|.+.+.|+|.+|+|++.++++|++..+.++|+.+||++++++..|-.++...|..+.|
T Consensus       252 flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~~kl  328 (329)
T KOG1255|consen  252 FLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLKLKL  328 (329)
T ss_pred             HHHHhccCCCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHHhccC
Confidence            999853   78999999999999889999999999999999999999999999999999999998888766665544

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=100.00  E-value=5.9e-51  Score=415.52  Aligned_cols=273  Identities=25%  Similarity=0.364  Sum_probs=247.2

Q ss_pred             CcccccCCCCeEEEEEcCCCCC---CcHHHHHHHHcCCe-EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC
Q 020101           33 PAPAVFVDKNTRVICQGITGKN---GTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        33 ~l~~ll~~k~~~VaIvGasgk~---G~~~~~~l~~~g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +|+.+|.|++++  |||||+++   |+.+.++|+++| + -++||||++  +++.|++||+++.++|.  .+|+++++||
T Consensus         3 ~l~~~~~p~sva--vigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~--~~v~G~~ay~s~~~lp~--~~dlav~~v~   75 (598)
T COG1042           3 DLERLFAPKSIA--VIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKY--DEVLGVKAYTSVADLPD--APDLAVIVVP   75 (598)
T ss_pred             chhhhhCCceEE--EeeccCCcchhHHHHHHHHHhcC-CCceEecCccc--cccccccccchHhhCCC--CCCeeEEEec
Confidence            488999999864  59999765   566778898887 3 344999999  79999999999999998  8999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhH------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCC-C
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHK-P  180 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~------~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~-~  180 (331)
                      +..+++++++|.++|++.+|+++.||.|..      ..++.+.| ++++++++||||+|++++. ++|..|.|..... +
T Consensus        76 ~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a-~~~~~rligPn~~G~~~~~~glna~f~p~~~~~~~  154 (598)
T COG1042          76 AKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAA-RKYGMRIIGPNCLGLINPIIGLNATFDPVFGLGRG  154 (598)
T ss_pred             hhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHH-HhcCceEeccccccccccccccccccCcccccccC
Confidence            999999999999999999999999998743      23455555 8999999999999999998 8899998875332 8


Q ss_pred             CCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh
Q 020101          181 GRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES  260 (331)
Q Consensus       181 G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~  260 (331)
                      |+++++||||+++..+++|+.+.++|+|+++|.||++  |+++.|+++||.+|+.|++|.||+|+    .+++++|++++
T Consensus       155 g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E~----~~~~r~fl~~a  228 (598)
T COG1042         155 GGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIEG----VKDGRKFLNAA  228 (598)
T ss_pred             CCeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEecc----chhHHHHHHHH
Confidence            9999999999999999999999999999999999998  99999999999999999999999998    56999999998


Q ss_pred             C---CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101          261 G---TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  324 (331)
Q Consensus       261 r---~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~  324 (331)
                      |   ++||+|++|+||+.. +++  .||||+++    |++.+|+++|+|+|++++++++||++.++++.
T Consensus       229 ~~~~~~kpii~lk~gr~~~-~akAa~shTgsla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l~  292 (598)
T COG1042         229 RAAERKKPIIALKAGRSEA-GAKAAASHTGSLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKALS  292 (598)
T ss_pred             HHHhcCCCEEEEeccCCHH-HHHHHhccccccc----ccchhhHHHHHhhCceeccChHHHHHHHHHhc
Confidence            7   889999999999999 665  69999999    89999999999999999999999999999854

>PRK06091 membrane protein FdrA; Validated

Probab=100.00  E-value=3.1e-39  Score=323.25  Aligned_cols=209  Identities=22%  Similarity=0.312  Sum_probs=176.8

Q ss_pred             cccccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101           85 LPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus        85 ~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      .|.|+++.++.++ +++|++++++|++.+++.+++|+++| +.+++||+||+.+.+++|.++| +++|++++|||| |+.
T Consensus       102 ~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~A-r~~GlrvmGPNC-G~~  178 (555)
T PRK06091        102 LTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRA-REKGLLVMGPDC-GTA  178 (555)
T ss_pred             CcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHH-HHcCCEEECCCC-hhh
Confidence            4455555444332 24699999999999999999999999 5578899999988888999998 899999999999 766


Q ss_pred             cCCCcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCC----CCCCHHHHHHHhhcCCCccEE
Q 020101          164 KPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF----NGTNFVDCVTKFIADPQTEGI  239 (331)
Q Consensus       164 ~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~----~~v~~~d~l~~l~~Dp~T~~I  239 (331)
                      +..+++++|.+.  +++|+||+|||||+++.++++|+.++|+|||++||+||+..    .|+++.|+|+||.+||+|++|
T Consensus       179 ~i~gl~lsF~~~--~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvI  256 (555)
T PRK06091        179 MIAGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVI  256 (555)
T ss_pred             hhcCCcccccCC--CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEE
Confidence            655777777543  46999999999999999999999999999999999999931    388999999999999999999


Q ss_pred             EEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q 020101          240 ILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGA  318 (331)
Q Consensus       240 ~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~  318 (331)
                      ++|+|.....++  ++|++++| .+||||++|+||++.                |.        +|+|+++++|++|+.+
T Consensus       257 vly~kppaE~v~--~~fl~aar~~~KPVVvlk~Grs~~----------------g~--------~q~GVi~a~tleEl~~  310 (555)
T PRK06091        257 AFVSKPPAEAVR--LKIINAMKATGKPVVALFLGYTPA----------------VA--------RDENVWFASTLDEAAR  310 (555)
T ss_pred             EEEEecCchHHH--HHHHHHHhhCCCCEEEEEecCCch----------------hh--------hcCCeEEeCCHHHHHH
Confidence            999933211144  49999987 899999999999887                22        9999999999999999


Q ss_pred             HHHHHH
Q 020101          319 AMLEVF  324 (331)
Q Consensus       319 ~~~a~~  324 (331)
                      .+.++.
T Consensus       311 ~A~~la  316 (555)
T PRK06091        311 LACLLS  316 (555)
T ss_pred             HHHHHh
Confidence            998754

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=100.00  E-value=9.5e-41  Score=283.55  Aligned_cols=132  Identities=29%  Similarity=0.439  Sum_probs=95.6

Q ss_pred             CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHH
Q 020101          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE  259 (331)
Q Consensus       180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a  259 (331)
                      ||+||+|||||+++.++++++.++|+|||++||+||++  |+++.|+|+||.+||+|++|++|+|+    ++|+++|+++
T Consensus         1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E~----~~d~~~f~~~   74 (138)
T PF13607_consen    1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLEG----IGDGRRFLEA   74 (138)
T ss_dssp             E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES------S-HHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEccC----CCCHHHHHHH
Confidence            69999999999999999999999999999999999998  99999999999999999999999999    5688999998


Q ss_pred             hC---CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q 020101          260 SG---TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE  322 (331)
Q Consensus       260 ~r---~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a  322 (331)
                      +|   +.||||+||+||++. |++  .||||+++    |++.+|+++|||+|+++++|++||++++++
T Consensus        75 ~~~a~~~KPVv~lk~Grt~~-g~~aa~sHTgsla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~~  137 (138)
T PF13607_consen   75 ARRAARRKPVVVLKAGRTEA-GARAAASHTGSLA----GDDAVYDAALRQAGVVRVDDLDELLDAAKA  137 (138)
T ss_dssp             HHHHCCCS-EEEEE--------------------------HHHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred             HHHHhcCCCEEEEeCCCchh-hhhhhhccCCccc----CcHHHHHHHHHHcCceEECCHHHHHHHHHh
Confidence            76   569999999999999 666  79999999    899999999999999999999999999874

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=99.89  E-value=2.8e-23  Score=171.61  Aligned_cols=112  Identities=24%  Similarity=0.386  Sum_probs=85.6

Q ss_pred             EEEEEcCCCC---CCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           44 RVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        44 ~VaIvGasgk---~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +|+|||+|.+   +|+.+++++++.|++++ +|||+.  ++++|.++|++++|+|+  ++|++++++|++.+.+++++|.
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~~   76 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEAA   76 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHHH
T ss_pred             EEEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHHH
Confidence            5788999965   45667788888999987 999999  89999999999999766  8999999999999999999999


Q ss_pred             HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101          121 EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p  165 (331)
                      ++|++.+|+ .+|   +..+++.+++ +++|++++||||+|+++|
T Consensus        77 ~~g~~~v~~-~~g---~~~~~~~~~a-~~~gi~vigp~C~gv~~~  116 (116)
T PF13380_consen   77 ALGVKAVWL-QPG---AESEELIEAA-REAGIRVIGPNCLGVVNP  116 (116)
T ss_dssp             HHT-SEEEE--TT---S--HHHHHHH-HHTT-EEEESS-HHHHHT
T ss_pred             HcCCCEEEE-Ecc---hHHHHHHHHH-HHcCCEEEeCCcceEEcC
Confidence            999999885 555   3334555666 789999999999999875

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=99.81  E-value=4.1e-20  Score=154.16  Aligned_cols=124  Identities=18%  Similarity=0.267  Sum_probs=106.9

Q ss_pred             cccccCCCCeEEEEEcCCCCC---CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           34 APAVFVDKNTRVICQGITGKN---GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~---G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      |..+| .+..+|+|||+|.++   ++.+++.|++.||+++ ||||+..|++++|.++|+||+|+|+  ++|++.+|.+++
T Consensus         9 i~~iL-~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~e   84 (140)
T COG1832           9 IAEIL-KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRSE   84 (140)
T ss_pred             HHHHH-HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecChh
Confidence            77777 446778899999865   5667889999999999 9999887789999999999999997  899999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      .++++++++++.|++.+| ++.|...++..+   .+ +++|+.++...|+.+-.+.
T Consensus        85 ~~~~i~~eal~~~~kv~W-~QlGi~n~ea~~---~~-~~aG~~vV~nrCi~~E~~~  135 (140)
T COG1832          85 AAPEVAREALEKGAKVVW-LQLGIRNEEAAE---KA-RDAGLDVVMDRCIMIEHPR  135 (140)
T ss_pred             hhHHHHHHHHhhCCCeEE-EecCcCCHHHHH---HH-HHhCcHHHHHhhHHHHHhh
Confidence            999999999999999977 899987666443   33 6788899999999876543

>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]

Probab=99.72  E-value=6.7e-17  Score=157.94  Aligned_cols=240  Identities=30%  Similarity=0.472  Sum_probs=196.6

Q ss_pred             CcccccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101           84 GLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus        84 G~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      =+|+|+++++...+ +..|+.+-+.....+.+--.++.+.+ ++.+-++.+|.+|.+..++...+ +..+..++||-+.|
T Consensus        54 ~IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a-~~k~~~iiGPaTvg  132 (600)
T KOG1254|consen   54 LIPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGA-EVKGVGIIGPATVG  132 (600)
T ss_pred             EeechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhcc-ccccceEEeeeeec
Confidence            36889876655443 45788888888888888888888877 88888899999999888777665 77888999999999


Q ss_pred             cccCCCcccc--------cCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcC
Q 020101          162 VIKPGECKIG--------IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIAD  233 (331)
Q Consensus       162 i~~p~~~~~~--------~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~D  233 (331)
                      .+-|.-+.+|        .......|+|.+++||.||++..++-+.-.+.=.|....+.+|++.+++.++.|.+..+.+|
T Consensus       133 gVePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~  212 (600)
T KOG1254|consen  133 GVEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHD  212 (600)
T ss_pred             cccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhcc
Confidence            9998722221        11223489999999999999999998777777788999999999999999999999999999


Q ss_pred             CCccEEEEEEccCCCcHHHHHHHHHHh---CCCCCEEEEEeCCCCCC---CCCCCCCcccccCCCCCHHHHHHHHHHcCC
Q 020101          234 PQTEGIILIGEIGGTAEEDAAALIKES---GTEKPIVAFIAGLTAPP---GRRMGHAGAIVSGGKGTAQDKIKTLREAGV  307 (331)
Q Consensus       234 p~T~~I~ly~E~~g~~~~~~~~f~~a~---r~~KPVvv~k~Grs~~~---g~~~sHtga~a~~~~g~~~~~~a~~~~aGv  307 (331)
                      |.++.|++..|..|+.+.   .|+++.   +-+||+|++..|.+...   ..++.|.|+-+........+.+++++.+|+
T Consensus       213 ~~vk~Iv~Lgevgg~~ey---~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~  289 (600)
T KOG1254|consen  213 PLVKFIVVLGEVGGDEEY---TFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGA  289 (600)
T ss_pred             ChhheEEeehhhccccee---ehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccc
Confidence            999999999998876544   466655   48999999999997651   556899999885444556678999999999


Q ss_pred             eEeCCHhHHHHHHHHHHHhc
Q 020101          308 TVVESPAKIGAAMLEVFKQR  327 (331)
Q Consensus       308 ~~v~~~~el~~~~~a~~~~~  327 (331)
                      .+.+++++|....+..|+.+
T Consensus       290 ~vpesf~~l~~~i~~~~e~l  309 (600)
T KOG1254|consen  290 TVPESFDALGADIQETYEFL  309 (600)
T ss_pred             cCccchhhhhhhhccchhcc
Confidence            99999999999998888754

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=99.60  E-value=8.4e-15  Score=116.86  Aligned_cols=93  Identities=30%  Similarity=0.327  Sum_probs=78.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHH-HHHcCCe--EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQ-AIEYGTK--MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~-l~~~g~~--iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|..+|+|+|+ |+.|+.++.. +...||+  .+..+||+..|+++.|+|+|.+++++.+..++|++++++|++.+++++
T Consensus         1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~   79 (96)
T PF02629_consen    1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA   79 (96)
T ss_dssp             CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred             CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence            46789999999 8899877643 4445765  444699998889999999999999999865699999999999999999


Q ss_pred             HHHHHcCCcEEEEecCC
Q 020101          117 LEAMEAELDLVVCITEG  133 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G  133 (331)
                      +++++.|||.+|+||+|
T Consensus        80 ~~~~~~gIk~i~nft~~   96 (96)
T PF02629_consen   80 DELVEAGIKGIVNFTPG   96 (96)
T ss_dssp             HHHHHTT-SEEEEESSS
T ss_pred             HHHHHcCCCEEEEeCCC
Confidence            99999999999999986

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=99.51  E-value=7.8e-14  Score=116.43  Aligned_cols=110  Identities=25%  Similarity=0.371  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCC---CCce--------ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~---~g~~--------i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +||+|+|++||||+.+.+.+.+ .++++++.++++.   .|+.        ..|++++.+++++.+  .+|++|+|+.|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCChH
Confidence            5899999999999999999988 5899998888775   2332        358899999999998  599999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+.++.|+++|++. |+.|+|+++++..+|.+++ ++  +. ++.||
T Consensus        79 ~~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~l~~~a-~~--~~vl~a~N  123 (124)
T PF01113_consen   79 AVYDNLEYALKHGVPL-VIGTTGFSDEQIDELEELA-KK--IPVLIAPN  123 (124)
T ss_dssp             HHHHHHHHHHHHT-EE-EEE-SSSHHHHHHHHHHHT-TT--SEEEE-SS
T ss_pred             HhHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHHh-cc--CCEEEeCC
Confidence            9999999999999997 6699999999988888876 44  44 66777

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=99.40  E-value=4.6e-13  Score=117.56  Aligned_cols=105  Identities=23%  Similarity=0.319  Sum_probs=90.0

Q ss_pred             CCCCCCCCccccc-----CCCCeEEEEEcCCCCCCcHHHH--HHHHcCCeEEEE--eCCCCCCceecCccccc--CHHHh
Q 020101           26 SFTTAPPPAPAVF-----VDKNTRVICQGITGKNGTFHTE--QAIEYGTKMVGG--VTPKKGGTEHLGLPVFN--TVAEA   94 (331)
Q Consensus        26 ~~~~~~~~l~~ll-----~~k~~~VaIvGasgk~G~~~~~--~l~~~g~~iv~~--VnP~~~g~~i~G~p~y~--sl~dl   94 (331)
                      +|+..+  |...|     .++.++|+|||+ |++|++++.  +..++++++++.  +||+..|.++.++|+|.  +++..
T Consensus        65 GYnV~~--L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~  141 (211)
T COG2344          65 GYNVKY--LRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKF  141 (211)
T ss_pred             CccHHH--HHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHH
Confidence            556655  55544     678999999999 999999875  466789998876  78888899999999997  57777


Q ss_pred             hhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 020101           95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus        95 ~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      .++.++|++|+++|.+.++++++.++++|||+||+||+.
T Consensus       142 v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv  180 (211)
T COG2344         142 VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV  180 (211)
T ss_pred             HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence            777789999999999999999999999999999999985

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=99.40  E-value=2.9e-12  Score=120.36  Aligned_cols=117  Identities=21%  Similarity=0.321  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeC-CCC--CCce---e-----cCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-PKK--GGTE---H-----LGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~Vn-P~~--~g~~---i-----~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ++|+|+|++|+||+.+++.+.+ .++++++.++ +..  .++.   .     .|+++|.+++++..  .+|++|+|+||+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~--~~DvVIdfT~p~   79 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET--DPDVLIDFTTPE   79 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC--CCCEEEECCChH
Confidence            6899999889999999999887 4899998888 322  1111   1     46889999999832  699999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC-CCcc
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVI  163 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc-~Gi~  163 (331)
                      .+.+.++.|+++|++. ++.|+|+++++.++|.++| +++|+. +++||. +|+.
T Consensus        80 ~~~~~~~~al~~g~~v-Vigttg~~~e~~~~l~~aA-~~~g~~v~~a~NfSlGv~  132 (266)
T TIGR00036        80 GVLNHLKFALEHGVRL-VVGTTGFSEEDKQELADLA-EKAGIAAVIAPNFSIGVN  132 (266)
T ss_pred             HHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHH-hcCCccEEEECcccHHHH
Confidence            9999999999999987 5688999999999999887 777776 667885 4443

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=99.33  E-value=9.8e-12  Score=115.06  Aligned_cols=116  Identities=22%  Similarity=0.324  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC-----------CceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-----------GTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~-----------g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      .+||+|+||+||||+.+.+.+.+. ++++++.++....           |....|+|+.+++.....  ++|++|+||.|
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P   79 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTP   79 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCc
Confidence            578999999999999999998875 6899988775542           113568899998666555  89999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC-CCc
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGV  162 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc-~Gi  162 (331)
                      +.+.+.++.|.++|++. |+.|+||++++.++|.+++ ++.+ -++.||. +|+
T Consensus        80 ~~~~~~l~~~~~~~~~l-VIGTTGf~~e~~~~l~~~a-~~v~-vv~a~NfSiGv  130 (266)
T COG0289          80 EATLENLEFALEHGKPL-VIGTTGFTEEQLEKLREAA-EKVP-VVIAPNFSLGV  130 (266)
T ss_pred             hhhHHHHHHHHHcCCCe-EEECCCCCHHHHHHHHHHH-hhCC-EEEeccchHHH
Confidence            99999999999999887 6699999999999998887 5532 3667774 443

>PLN02775 Probable dihydrodipicolinate reductase

Probab=99.30  E-value=2.2e-11  Score=114.74  Aligned_cols=118  Identities=17%  Similarity=0.190  Sum_probs=96.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec------Ccccc--cCHHHhhhcC---CCC-EEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL------GLPVF--NTVAEAKAET---KAN-ASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~------G~p~y--~sl~dl~~~~---~iD-laii~vp~  109 (331)
                      .++|+|.|++||||+.+.+.+.+.++++++.++++..|+...      ++++|  .+++++..+.   .+| ++|+|+.|
T Consensus        11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P   90 (286)
T PLN02775         11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP   90 (286)
T ss_pred             CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence            478999999999999999988888999998899887654322      68899  8899988543   689 89999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC-CCccc
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVIK  164 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc-~Gi~~  164 (331)
                      +.+.+.++.|+++|++. |+.|+|+++++..++   + ++.++. ++.||. +|+..
T Consensus        91 ~a~~~~~~~~~~~g~~~-VvGTTG~~~e~l~~~---~-~~~~i~vv~apNfSiGv~l  142 (286)
T PLN02775         91 DAVNDNAELYCKNGLPF-VMGTTGGDRDRLLKD---V-EESGVYAVIAPQMGKQVVA  142 (286)
T ss_pred             HHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHH---H-hcCCccEEEECcccHHHHH
Confidence            99999999999999997 669999998865544   3 344554 778886 45443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=99.24  E-value=7e-11  Score=110.44  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      ++|+|+|++|+||+.+++.+.+. ++++++.+++.....   ...|++.|.+++++.+  ++|++++|+||+.+.++++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~   79 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEF   79 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHH
Confidence            68999999999999999988874 789998887664211   2346778999999886  79999999999999999999


Q ss_pred             HHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      |+++|++.+ +.|+|+++++.++|.+.+ ++.+ .++.||+
T Consensus        80 al~~G~~vv-igttG~s~~~~~~l~~aa-~~~~-v~~s~n~  117 (257)
T PRK00048         80 ALEHGKPLV-IGTTGFTEEQLAELEEAA-KKIP-VVIAPNF  117 (257)
T ss_pred             HHHcCCCEE-EECCCCCHHHHHHHHHHh-cCCC-EEEECcc
Confidence            999999985 579999999988888844 4444 3555664

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.16  E-value=1.3e-10  Score=95.06  Aligned_cols=108  Identities=21%  Similarity=0.302  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ++|+|||+ |++|+.+.+.+.+.  ++++++.+||.....    +..|+++|++++++.+++++|++++++|+..+.+.+
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~   79 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA   79 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence            57899999 99999998887765  678998899875211    247999999999999877899999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      ++|+++|++. ++=-| ..+.++.++|.+.+ +++|..
T Consensus        80 ~~~l~~g~~v-~~EKP~~~~~~~~~~l~~~a-~~~~~~  115 (120)
T PF01408_consen   80 KKALEAGKHV-LVEKPLALTLEEAEELVEAA-KEKGVK  115 (120)
T ss_dssp             HHHHHTTSEE-EEESSSSSSHHHHHHHHHHH-HHHTSC
T ss_pred             HHHHHcCCEE-EEEcCCcCCHHHHHHHHHHH-HHhCCE
Confidence            9999999965 44333 45678888998888 666654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=99.14  E-value=2.9e-10  Score=106.67  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCCCCCCce---ec--Cccc------ccCHHHhhhcCCCC-EEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE---HL--GLPV------FNTVAEAKAETKAN-ASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP~~~g~~---i~--G~p~------y~sl~dl~~~~~iD-laii~vp~  109 (331)
                      ++|+|.||+||||+.+.+.+.+.++++++. ++++..++.   +.  ++|+      +.+++++.+. .+| ++|+||.|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P   79 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP   79 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh
Confidence            478999999999999999988889999976 888764432   22  6788      8899999862 489 99999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCc-EEEccCC-CCccc
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT-RLVGPNC-PGVIK  164 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi-~viGPnc-~Gi~~  164 (331)
                      +.+.+.++.|.++|++. |+.|+|+++++..++.+.    .++ .++.||. +|+..
T Consensus        80 ~~~~~n~~~~~~~gv~~-ViGTTG~~~~~~~~l~~~----~~i~~l~apNfSiGv~l  131 (275)
T TIGR02130        80 SAVNDNAAFYGKHGIPF-VMGTTGGDREALAKLVAD----AKHPAVIAPNMAKQIVA  131 (275)
T ss_pred             HHHHHHHHHHHHCCCCE-EEcCCCCCHHHHHHHHHh----cCCCEEEECcccHHHHH
Confidence            99999999999999997 669999999988877543    234 4778885 55543

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=98.93  E-value=7.6e-09  Score=89.45  Aligned_cols=122  Identities=34%  Similarity=0.453  Sum_probs=97.9

Q ss_pred             EecChHHHHHHHHHHHhC--------------CCCceEEEecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q 020101          186 VSRSGTLTYEAVFQTTAV--------------GLGQSTCVGIGGDPFN---------GTNFVDCVTKFIADPQTEGIILI  242 (331)
Q Consensus       186 isQSG~~~~~~~~~~~~~--------------g~g~s~~vs~Gn~~~~---------~v~~~d~l~~l~~Dp~T~~I~ly  242 (331)
                      ++.+|+|+.+.++...+.              +.+.+.++.+|...+.         .....|.|+.+.+||+|++|++-
T Consensus         1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd   80 (153)
T PF00549_consen    1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD   80 (153)
T ss_dssp             EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence            578999999999999999              9999999999999865         67899999999999999999999


Q ss_pred             EccC-CCcHHHHHHHHHHhC------CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhH
Q 020101          243 GEIG-GTAEEDAAALIKESG------TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAK  315 (331)
Q Consensus       243 ~E~~-g~~~~~~~~f~~a~r------~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~e  315 (331)
                      +|.+ |..+..+..++++.+      +.||||++..|+....+.+..|               ..+|+++|+..+.+-++
T Consensus        81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~---------------~~~L~~~G~~v~~s~~~  145 (153)
T PF00549_consen   81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQ---------------AGALEDAGVIVAESNAQ  145 (153)
T ss_dssp             EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHH---------------HHHHHCTTCSCHHHHHH
T ss_pred             eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHH---------------HHHHHhCCCcccccHHH
Confidence            9986 888888888888875      4789999999987763332333               34566677766666666


Q ss_pred             HHHHHHH
Q 020101          316 IGAAMLE  322 (331)
Q Consensus       316 l~~~~~a  322 (331)
                      -..++.+
T Consensus       146 A~~~A~a  152 (153)
T PF00549_consen  146 AARAAGA  152 (153)
T ss_dssp             HHHHHTH
T ss_pred             HHHHcCC
Confidence            5555443

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>PRK11579 putative oxidoreductase; Provisional

Probab=98.86  E-value=1.9e-08  Score=97.61  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             CCeEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           41 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +.++|+|||+ |.+|+ .+.+.+... ++++++.++++...  +...+.++|.+++++.++.++|+++|+||+..+.+.+
T Consensus         3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~   81 (346)
T PRK11579          3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA   81 (346)
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            3589999999 88987 466776664 78999888876521  1233677899999999866899999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+.++=-.-..+.++..+|.++| +++|+. .++.|
T Consensus        82 ~~al~aGkhVl~EKPla~t~~ea~~l~~~a-~~~g~~l~v~~~  123 (346)
T PRK11579         82 KAALEAGKHVVVDKPFTVTLSQARELDALA-KSAGRVLSVFHN  123 (346)
T ss_pred             HHHHHCCCeEEEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEee
Confidence            999999988643222245667788888888 677765 34433

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.80  E-value=2.4e-08  Score=95.78  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=88.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCC-c---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +.++|+|||+.+-.++.+...+.+.+  +++++.++++... +   +..|++ +|.+++++.++.++|+++|++|+..+.
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence            56899999993344566888888764  5888888887621 1   246775 999999999877799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +++.+|+++|++.++=-.-..+.++.++|.++| +++|+. .+|.|
T Consensus        82 e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a-~~~~~~l~v~~~  126 (342)
T COG0673          82 ELALAALEAGKHVLCEKPLALTLEEAEELVELA-RKAGVKLMVGFN  126 (342)
T ss_pred             HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH-HHcCCceeeehh
Confidence            999999999998633111135567788888888 666754 55655

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.75  E-value=4.7e-08  Score=91.86  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---ee--cCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EH--LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---~i--~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +||+|+|+ |++|+.+++.+.+. +.++++.+++....+   ..  .+.++|.+++++ . .++|++++|+|++.+.+.+
T Consensus         2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~   78 (265)
T PRK13303          2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHV   78 (265)
T ss_pred             cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHH
Confidence            58999999 99999999998875 677776654432111   11  267889999998 3 3799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCC-CChhH-HHHHHHHHhccCCcE-EEccCCCCcc
Q 020101          117 LEAMEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTR-LVGPNCPGVI  163 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G-~~e~~-~~~l~~~a~~~~gi~-viGPnc~Gi~  163 (331)
                      .+++++|++. ++.++| +++.+ ..+|.+.| +++|.+ ++-|.+.|.+
T Consensus        79 ~~aL~aGk~V-vi~s~~Al~d~~~~~~L~~~A-~~~g~~l~v~sga~gg~  126 (265)
T PRK13303         79 VPILKAGIDC-AVISVGALADEALRERLEQAA-EAGGARLHLLSGAIGGI  126 (265)
T ss_pred             HHHHHcCCCE-EEeChHHhcCHHHHHHHHHHH-HHCCCEEEEeChHhhCH
Confidence            9999999987 556777 55443 46677777 677766 4444444443

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.71  E-value=7.2e-08  Score=90.55  Aligned_cols=108  Identities=7%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ++|+|||+ |++|+.+++.+.+.  ++++++.+|++... +   +..|.+.|.+++++..  ++|++++++|++.+.+.+
T Consensus         2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~   78 (265)
T PRK13304          2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV   78 (265)
T ss_pred             CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence            57999999 99999999988875  57888888886521 1   1346788999999985  799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCC--ChhHHHHHHHHHhccCCcEEE
Q 020101          117 LEAMEAELDLVVCITEGI--PQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~--~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ++++++|.+. ++.+.|.  .++..++|.+.| +++|.++.
T Consensus        79 ~~al~~Gk~V-vv~s~gAl~d~~~~~~L~~aA-~~~g~~l~  117 (265)
T PRK13304         79 PKSLENGKDV-IIMSVGALADKELFLKLYKLA-KENNCKIY  117 (265)
T ss_pred             HHHHHcCCCE-EEEchHHhcCHHHHHHHHHHH-HHcCCEEE
Confidence            9999999886 5567663  344566788877 77887654

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.67  E-value=5.6e-08  Score=88.35  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=84.2

Q ss_pred             ccccCCCCCCCCCC--CCccccc-CCCCeEEEEEcCCCCCCcHHHHHH--HHcCCeEEEEeCC--CCCCceecCccccc-
Q 020101           18 EICCGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGVTP--KKGGTEHLGLPVFN-   89 (331)
Q Consensus        18 ~~~~~~~~~~~~~~--~~l~~ll-~~k~~~VaIvGasgk~G~~~~~~l--~~~g~~iv~~VnP--~~~g~~i~G~p~y~-   89 (331)
                      |.---+.-+|+..+  ..++.+| ....++|+|+|+ |++|+.+.+.+  .+.|+++++.+|+  ...+..+.|.|++. 
T Consensus        57 ~~~G~~~~gy~v~~l~~~~~~~l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~  135 (213)
T PRK05472         57 GEFGKRGVGYNVEELLEFIEKILGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHI  135 (213)
T ss_pred             HhcCCCCCCeeHHHHHHHHHHHhCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCH
Confidence            43334455564331  2255666 445678999999 99999888753  2458999987765  34445567777764 


Q ss_pred             -CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        90 -sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                       +++++..++++|.+++++|...+.++++.+.++|++.+|++++
T Consensus       136 ~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        136 DELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence             5677766567999999999999999999999999999999876

>PRK10206 putative oxidoreductase; Provisional

Probab=98.65  E-value=1.4e-07  Score=91.79  Aligned_cols=111  Identities=9%  Similarity=-0.001  Sum_probs=82.6

Q ss_pred             CeEEEEEcCCCCCC-cHHHHHHHH--cCCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNG-TFHTEQAIE--YGTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G-~~~~~~l~~--~g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ++||+|||+ |+++ +.++..+..  .++++++.+++.....    ...+.+.|.+++++.++.++|+++|++|+..+.+
T Consensus         1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~   79 (344)
T PRK10206          1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   79 (344)
T ss_pred             CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence            368999999 7754 456666544  3688988887754111    1234789999999998778999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEE
Q 020101          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~v  154 (331)
                      .+.+|+++|++.++=-.-..+.++.++|.+.+ +++|+.+
T Consensus        80 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l  118 (344)
T PRK10206         80 YAKRALEAGKNVLVEKPFTPTLAEAKELFALA-KSKGLTV  118 (344)
T ss_pred             HHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH-HHhCCEE
Confidence            99999999987633111134567788888888 7888664

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.64  E-value=1.6e-07  Score=88.63  Aligned_cols=113  Identities=13%  Similarity=0.102  Sum_probs=85.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHH--cCCeEEEEeCCCCCCc----eecC-cccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGGT----EHLG-LPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~--~g~~iv~~VnP~~~g~----~i~G-~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +.++|+|||+ |++|+.+++.+.+  .++++++..++.....    +..| .+.|.+++++..  ++|++++++|++.+.
T Consensus         5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~   81 (271)
T PRK13302          5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLR   81 (271)
T ss_pred             CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHH
Confidence            4588999999 9999999999886  3788887777764211    1234 367889999986  799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEE-EccCC
Q 020101          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNC  159 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~v-iGPnc  159 (331)
                      +.+..++++|.+. ++.+.|- ..+.++|.+.+ +++|.++ +++..
T Consensus        82 e~~~~aL~aGk~V-i~~s~ga-l~~~~~L~~~A-~~~g~~l~v~sGa  125 (271)
T PRK13302         82 AIVEPVLAAGKKA-IVLSVGA-LLRNEDLIDLA-RQNGGQIIVPTGA  125 (271)
T ss_pred             HHHHHHHHcCCcE-EEecchh-HHhHHHHHHHH-HHcCCEEEEcchH
Confidence            9999999999876 4455552 23456777777 7788775 54443

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.54  E-value=2.8e-07  Score=89.73  Aligned_cols=108  Identities=13%  Similarity=0.191  Sum_probs=83.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEec----Chh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYV----PPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~v----p~~  110 (331)
                      +.++|+|||+  .+|+.+++.+.+.  ++++++.+++.... +   +-+|++.|.+++|+++  ++|+++|++    |+.
T Consensus         2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~   77 (343)
T TIGR01761         2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGG   77 (343)
T ss_pred             CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCc
Confidence            4688999998  4899999888874  58999888887521 1   2468999999999997  577777766    457


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      .+.+++.+|+++|++. ++ ---+..++.+++.+.| +++|+.+.
T Consensus        78 ~H~e~a~~aL~aGkHV-L~-EKPla~~Ea~el~~~A-~~~g~~l~  119 (343)
T TIGR01761        78 QGSALARALLARGIHV-LQ-EHPLHPRDIQDLLRLA-ERQGRRYL  119 (343)
T ss_pred             cHHHHHHHHHhCCCeE-EE-cCCCCHHHHHHHHHHH-HHcCCEEE
Confidence            9999999999999886 43 2235567888898888 78887655

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.36  E-value=1.5e-06  Score=83.70  Aligned_cols=111  Identities=11%  Similarity=0.090  Sum_probs=80.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCccccc--CHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      .++|+|+|. |++|+.+.+.+.+. ++++++.++++..+..-.+.++|.  +.+++..  ++|++++|+|...+.+.+..
T Consensus         3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~   79 (324)
T TIGR01921         3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP   79 (324)
T ss_pred             CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence            589999999 99999999988775 899998878763111112344444  5555554  79999999999999999999


Q ss_pred             HHHcCCcEEEEecCCCC-hhHHHHHHHHHhcc-CCcEEEc
Q 020101          119 AMEAELDLVVCITEGIP-QHDMVRVKAALNNQ-SKTRLVG  156 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~-~gi~viG  156 (331)
                      ++++|++.|-.+.+... .+..+++.++| ++ .++.+++
T Consensus        80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AA-k~~g~vsvi~  118 (324)
T TIGR01921        80 YFAQFANTVDSFDNHRDIPRHRQVMDAAA-KAAGNVSVIS  118 (324)
T ss_pred             HHHcCCCEEECCCcccCCHHHHHHHHHHH-HHcCCEEEEE
Confidence            99999998554433322 23345566666 54 6788887

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.35  E-value=7.9e-05  Score=75.17  Aligned_cols=255  Identities=15%  Similarity=0.130  Sum_probs=151.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC----hhhHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP----PPFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp----~~~~~~~v  116 (331)
                      +.=+|++|.=||.++..++..+.+.|+.+-..|+-..  +.  .+..-+-++-+.++++.++++++.-    +....+.+
T Consensus       149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~--d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa  224 (447)
T TIGR02717       149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGN--KA--DIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTA  224 (447)
T ss_pred             CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCc--hh--hCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHH
Confidence            3345788998888888888877776554333444433  11  1111111233333456888888865    34555666


Q ss_pred             HHHHHcCCcEEEEecCCCChhHH-------------HHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCE
Q 020101          117 LEAMEAELDLVVCITEGIPQHDM-------------VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRI  183 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~-------------~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~v  183 (331)
                      +.+.+ +.+ |+++-.|-++...             .++.+.+-++.|+..+ .+.--+++..   ..+.....++-.+|
T Consensus       225 ~~a~~-~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~---~~l~~~~~~~g~rv  298 (447)
T TIGR02717       225 REISK-KKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLA---RLLSNQPLPKGNRV  298 (447)
T ss_pred             HHHcC-CCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHH---HHHhcCCCCCCCeE
Confidence            66643 544 5667777765432             1233333367775544 1211122210   11111122445579


Q ss_pred             EEEecChHHHHHHHHHHHhCCCCceE---------------EEecCCCCC-----CCCCHHHHHHHhhcCCCccEEEEEE
Q 020101          184 GIVSRSGTLTYEAVFQTTAVGLGQST---------------CVGIGGDPF-----NGTNFVDCVTKFIADPQTEGIILIG  243 (331)
Q Consensus       184 alisQSG~~~~~~~~~~~~~g~g~s~---------------~vs~Gn~~~-----~~v~~~d~l~~l~~Dp~T~~I~ly~  243 (331)
                      ++||-||+.+..+.|.+.+.|+.+-.               ..+.+|-.|     ..-.+.+.++.+.+||++.+|++.+
T Consensus       299 aivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~  378 (447)
T TIGR02717       299 AIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVL  378 (447)
T ss_pred             EEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEc
Confidence            99999999999999999999887662               345566431     1224678899999999999998664


Q ss_pred             ccCC--CcHHHHHHHHHHhC-C-CCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHH
Q 020101          244 EIGG--TAEEDAAALIKESG-T-EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAA  319 (331)
Q Consensus       244 E~~g--~~~~~~~~f~~a~r-~-~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~  319 (331)
                      -..+  ....-.+.+.++.+ . +|||++.-.|-                   ...+.....|+++|+...+++++-..+
T Consensus       379 ~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg-------------------~~~~~~~~~L~~~Gip~f~~p~~A~~a  439 (447)
T TIGR02717       379 TPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGG-------------------KSVDPAKRILEENGIPNYTFPERAVKA  439 (447)
T ss_pred             cCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCC-------------------ccHHHHHHHHHhCCCCccCCHHHHHHH
Confidence            3211  11223344444444 3 89997765331                   123445677899999999999998887


Q ss_pred             HHHHH
Q 020101          320 MLEVF  324 (331)
Q Consensus       320 ~~a~~  324 (331)
                      +..++
T Consensus       440 l~~~~  444 (447)
T TIGR02717       440 LSALY  444 (447)
T ss_pred             HHHHH
Confidence            77654

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.17  E-value=7.3e-06  Score=89.58  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=85.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCe------------EEEEeCCCCCC-ce----ecC---ccc-ccCHHHhhhc
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTK------------MVGGVTPKKGG-TE----HLG---LPV-FNTVAEAKAE   97 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~------------iv~~VnP~~~g-~~----i~G---~p~-y~sl~dl~~~   97 (331)
                      .+..+|+|+|| |++|+.+++.|.+. +++            ++...|+.... +.    ..+   ++. +.+.+++.+.
T Consensus       567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~  645 (1042)
T PLN02819        567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY  645 (1042)
T ss_pred             ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence            35678999999 99999999998764 444            45566665411 11    113   344 6677777642


Q ss_pred             -CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101           98 -TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus        98 -~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                       .++|+||+++|+..+.++++.|+++|++. +  ++.+..++..+|.+.| +++|+.++ |.|.  ++|.
T Consensus       646 v~~~DaVIsalP~~~H~~VAkaAieaGkHv-v--~eky~~~e~~~L~e~A-k~AGV~~m-~e~G--lDPG  708 (1042)
T PLN02819        646 VSQVDVVISLLPASCHAVVAKACIELKKHL-V--TASYVSEEMSALDSKA-KEAGITIL-CEMG--LDPG  708 (1042)
T ss_pred             hcCCCEEEECCCchhhHHHHHHHHHcCCCE-E--ECcCCHHHHHHHHHHH-HHcCCEEE-ECCc--cCHH
Confidence             26999999999999999999999999987 3  3446667777888887 78887765 4443  5554

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=98.07  E-value=1e-05  Score=74.50  Aligned_cols=95  Identities=11%  Similarity=0.119  Sum_probs=71.8

Q ss_pred             CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC--ChhHH
Q 020101           66 GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI--PQHDM  139 (331)
Q Consensus        66 g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~--~e~~~  139 (331)
                      ++++++..|+.... +   +..|.++|.+++++..+ ++|++++++|+..+.+...+++++|++.++ .++|.  ..++.
T Consensus         1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~-~vDaVviatp~~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~   78 (229)
T TIGR03855         1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLPE-DVDIVVEAASQEAVKEYAEKILKNGKDLLI-MSVGALADRELR   78 (229)
T ss_pred             CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhcC-CCCEEEECCChHHHHHHHHHHHHCCCCEEE-ECCcccCCHHHH
Confidence            35778788887521 1   23578899999999753 799999999999999999999999999755 77773  34667


Q ss_pred             HHHHHHHhccCCcE-EEccCCCCcc
Q 020101          140 VRVKAALNNQSKTR-LVGPNCPGVI  163 (331)
Q Consensus       140 ~~l~~~a~~~~gi~-viGPnc~Gi~  163 (331)
                      ++|.+.+ +++|.+ .++++.+|..
T Consensus        79 ~~l~~aA-~~~g~~l~i~sGai~g~  102 (229)
T TIGR03855        79 ERLREVA-RSSGRKVYIPSGAIGGL  102 (229)
T ss_pred             HHHHHHH-HhcCCEEEEChHHHHHH
Confidence            7888887 677766 5665554443

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.04  E-value=1.1e-05  Score=70.14  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~~  118 (331)
                      .+|.+||. |+||+.+.++|.+.|+++. ..|+.... ++  -.|....+|++|+.+  ..|++++++|... +.+++..
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~~   77 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLFG   77 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHHC
T ss_pred             CEEEEEch-HHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhhh
Confidence            57899999 9999999999999999976 56655310 11  257889999999988  6899999999854 5566665


Q ss_pred             --HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          119 --AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       119 --~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                        +.. ..-..+|+-.+-.+.+..+++.+.+ +++|++++-
T Consensus        78 ~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~-~~~g~~~vd  117 (163)
T PF03446_consen   78 ENILAGLRPGKIIIDMSTISPETSRELAERL-AAKGVRYVD  117 (163)
T ss_dssp             TTHGGGS-TTEEEEE-SS--HHHHHHHHHHH-HHTTEEEEE
T ss_pred             hHHhhccccceEEEecCCcchhhhhhhhhhh-hhccceeee
Confidence              444 2345555555555667777777776 677877663

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.04  E-value=3.2e-05  Score=74.48  Aligned_cols=124  Identities=10%  Similarity=0.068  Sum_probs=93.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCCC-ce---ec---CcccccCHHHhhhcCCCCEEEEecCh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG-TE---HL---GLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~g-~~---i~---G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      .+.+|+.|+|+ |++++...+.+.-   .+++|++..+|.... ++   -.   ..++|.|.+++.+.+.+|++.|.+|.
T Consensus         4 s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~   82 (351)
T KOG2741|consen    4 SATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN   82 (351)
T ss_pred             CceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence            35689999999 8888888776653   378899999996421 01   12   35799999999988889999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      ..+.+++..++++|.+.++=-....+.+|.++|.++| +++|+.++ -....-+.|.
T Consensus        83 ~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA-~~rgv~~m-eg~~~R~~P~  137 (351)
T KOG2741|consen   83 PQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAA-EARGVFFM-EGLWWRFFPR  137 (351)
T ss_pred             ccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHH-HHcCcEEE-eeeeeecCcH
Confidence            9999999999999988533233356778889999988 78886543 3333444443

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.98  E-value=2.7e-05  Score=78.01  Aligned_cols=112  Identities=16%  Similarity=0.082  Sum_probs=80.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHH--------c--CCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIE--------Y--GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~--------~--g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      +.++|+|+|+ |.+|+.+++.+.+        .  ++++++.++++....   ...+...|.+++++..+.++|++++++
T Consensus         2 ~~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~t   80 (426)
T PRK06349          2 KPLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELM   80 (426)
T ss_pred             CeEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECC
Confidence            4689999999 9999988766543        2  356887776554211   123456788999998766899999998


Q ss_pred             Ch-hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          108 PP-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       108 p~-~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ++ +.+.+.+++|+++|.+. +.-......++..+|.++| +++|+.+.
T Consensus        81 g~~~~~~~~~~~aL~~GkhV-VtaNK~~~a~~~~eL~~lA-~~~gv~l~  127 (426)
T PRK06349         81 GGIEPARELILKALEAGKHV-VTANKALLAVHGAELFAAA-EEKGVDLY  127 (426)
T ss_pred             CCchHHHHHHHHHHHCCCeE-EEcCHHHHHHHHHHHHHHH-HHcCCcEE
Confidence            65 67889999999999886 3222233334567788887 78887655

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.97  E-value=3e-05  Score=75.54  Aligned_cols=175  Identities=17%  Similarity=0.144  Sum_probs=101.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc----------CCeEEEEeCCCC-----CCce---------ecC-cccc------cC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKK-----GGTE---------HLG-LPVF------NT   90 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~----------g~~iv~~VnP~~-----~g~~---------i~G-~p~y------~s   90 (331)
                      .++|+|+|+ |++|+.+++.+.+.          ++++++.+|++.     .|-.         ..| ...|      .+
T Consensus         2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            478999999 99999988877643          467888777531     1100         011 2333      37


Q ss_pred             HHHhhhcCCCCEEEEecChhh-----HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101           91 VAEAKAETKANASAIYVPPPF-----AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (331)
Q Consensus        91 l~dl~~~~~iDlaii~vp~~~-----~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p  165 (331)
                      ++++..+.++|++++++|+..     +.+.+++|+++|++. +.-+.+.-.....+|.+.| +++|..+.=..+.|=..|
T Consensus        81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhV-VtaNK~pla~~~~eL~~~A-~~~g~~~~~ea~v~~glP  158 (341)
T PRK06270         81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHV-VTSNKGPLALAYKELKELA-KKNGVRFRYEATVGGAMP  158 (341)
T ss_pred             HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEE-EcCCcHHHHhhHHHHHHHH-HHcCCEEEEeeeeeechh
Confidence            888886668999999999754     478899999999886 4322233223445777777 788876652233332333


Q ss_pred             C--CcccccCCCCCCCCCCEEEEec--ChHHHHHHHHHHHhCCCCceEEE----ecCC-CC--CCCCCHHHH
Q 020101          166 G--ECKIGIMPGYIHKPGRIGIVSR--SGTLTYEAVFQTTAVGLGQSTCV----GIGG-DP--FNGTNFVDC  226 (331)
Q Consensus       166 ~--~~~~~~~~~~~~~~G~valisQ--SG~~~~~~~~~~~~~g~g~s~~v----s~Gn-~~--~~~v~~~d~  226 (331)
                      -  .+.-.      ...+.|.-|.-  ||+.. .+++...+.|..|+.++    ..|- +.  ..|++-.|.
T Consensus       159 ii~~l~~~------l~g~~I~~I~GIlnGT~n-yIl~~m~~~g~~f~~al~~Aq~~G~aE~DP~~D~~G~D~  223 (341)
T PRK06270        159 IINLAKET------LAGNDIKSIKGILNGTTN-YILTRMEEEGLSYEQALAEAQELGYAEADPTYDVEGIDA  223 (341)
T ss_pred             HHHHHHhh------cccCceEEEEEEEeCcHH-HHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCccHHH
Confidence            2  11101      22334444321  33332 24444445677776554    3442 22  236666665

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.94  E-value=3.6e-05  Score=74.17  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAIL  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v~  117 (331)
                      ..+|+|||+ |+||+.++++|.+.|++++...++.... +.  -.|+.+. +.+++.+  +.|++++++|++ ....+.+
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~   78 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEA   78 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHH
Confidence            456889999 9999999999999999866455554310 11  2466654 4777665  689999999999 5444444


Q ss_pred             HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCc
Q 020101          118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (331)
Q Consensus       118 ~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi  162 (331)
                      +.... .-+.++.++.||+-+..+.   ...+...+--+.||+.|.
T Consensus        79 ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~  121 (314)
T TIGR00465        79 EIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGT  121 (314)
T ss_pred             HHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcH
Confidence            44432 1234788999998655432   121233466678998885

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.93  E-value=8.2e-05  Score=68.34  Aligned_cols=113  Identities=13%  Similarity=0.155  Sum_probs=76.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCC-CC-Cce---ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPK-KG-GTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~-~~-g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +.++|+|||+ |++|+.+.+.+.+.+   .+.+..+++. .. .+.   ..++..+.+++++.+  +.|++++++|+..+
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~~   79 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSAH   79 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHHH
Confidence            4578999998 999999999887765   3323355542 21 011   246777888888876  79999999999999


Q ss_pred             HHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          113 AAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       113 ~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      .++++++... .-+.+|-.+.|++.+..++   .......+-.++||.
T Consensus        80 ~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~  124 (245)
T PRK07634         80 EELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNT  124 (245)
T ss_pred             HHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcH
Confidence            9999887642 2256666778997665443   221122344578873

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.93  E-value=3.6e-05  Score=73.12  Aligned_cols=88  Identities=18%  Similarity=0.070  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCC--C---ceecCccc-ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG--G---TEHLGLPV-FNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~--g---~~i~G~p~-y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      ++|+|||+ |++|+.++..+.+ .++++++.+++...  +   .+-.|++. |.+++++.++.++|+++++||+..+.+.
T Consensus         2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~   80 (285)
T TIGR03215         2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH   80 (285)
T ss_pred             cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            67999998 9999998776665 46888776654432  1   12368875 4589998876679999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC
Q 020101          116 ILEAMEAELDLVVCITE  132 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~  132 (331)
                      +.++.++|++. ++.++
T Consensus        81 a~~al~aGk~V-IdekP   96 (285)
T TIGR03215        81 ARLLAELGKIV-IDLTP   96 (285)
T ss_pred             HHHHHHcCCEE-EECCc
Confidence            99999999886 54554

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.91  E-value=4.6e-05  Score=74.25  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=68.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec---C-cc-----cccCHHHhhhcCCCCEEEEecChhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---G-LP-----VFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~---G-~p-----~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      .++|+|+||+|.+|+.+++.+.+. ++++++.++.+..++.+.   + ++     .|.++++.. ..++|++++++|...
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vD~Vf~alP~~~   80 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEI-LAGADVVFLALPHGV   80 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHH-hcCCCEEEECCCcHH
Confidence            368999999999999999998886 688887777543333221   1 21     344454432 236999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCh
Q 020101          112 AAAAILEAMEAELDLVVCITEGIPQ  136 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~G~~e  136 (331)
                      +.+.+.++.++|++. |-.+..|.-
T Consensus        81 ~~~~v~~a~~aG~~V-ID~S~~fR~  104 (343)
T PRK00436         81 SMDLAPQLLEAGVKV-IDLSADFRL  104 (343)
T ss_pred             HHHHHHHHHhCCCEE-EECCcccCC
Confidence            999999999999765 667777643

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.89  E-value=3.1e-05  Score=75.42  Aligned_cols=86  Identities=21%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC---------Cce-------------ecCcccccCHHHhhhcCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---------GTE-------------HLGLPVFNTVAEAKAETK   99 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~---------g~~-------------i~G~p~y~sl~dl~~~~~   99 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++.++++..         |-.             -.+++++.+++++.+  +
T Consensus         2 ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~--~   78 (341)
T PRK04207          2 IKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE--K   78 (341)
T ss_pred             eEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--c
Confidence            68999999 99999999988764 7899977764421         000             025667778888876  7


Q ss_pred             CCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 020101          100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       100 iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      +|++++|+|+..+.+.++.++++|.+. | ++.+
T Consensus        79 vDVVIdaT~~~~~~e~a~~~~~aGk~V-I-~~~~  110 (341)
T PRK04207         79 ADIVVDATPGGVGAKNKELYEKAGVKA-I-FQGG  110 (341)
T ss_pred             CCEEEECCCchhhHHHHHHHHHCCCEE-E-EcCC
Confidence            999999999999999999999999654 3 4555

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.88  E-value=5.4e-05  Score=72.38  Aligned_cols=90  Identities=14%  Similarity=0.053  Sum_probs=70.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC--CC---ceecCccc-ccCHHHhhhc---CCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GG---TEHLGLPV-FNTVAEAKAE---TKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~--~g---~~i~G~p~-y~sl~dl~~~---~~iDlaii~vp~~  110 (331)
                      +.++|+|||. |++|+.++..+.+. ++++++.+++..  .+   ..-.|++. |.+++++.+.   .++|+++++||++
T Consensus         3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~   81 (302)
T PRK08300          3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG   81 (302)
T ss_pred             CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence            4689999995 99999988777654 678887765543  22   12468886 5789999875   5799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .+.+....+.++|++. +..++
T Consensus        82 ~H~e~a~~a~eaGk~V-ID~sP  102 (302)
T PRK08300         82 AHVRHAAKLREAGIRA-IDLTP  102 (302)
T ss_pred             HHHHHHHHHHHcCCeE-EECCc
Confidence            9999999999999886 55555

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.86  E-value=3.8e-05  Score=64.48  Aligned_cols=95  Identities=18%  Similarity=0.112  Sum_probs=61.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-----eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +...+|.|||+ ||.|+.+.+.|.+.|+++.+..+++....     .+.+.+ +.+++|+.+  +.|++++++|.+...+
T Consensus         8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~-~~~~~~~~~--~aDlv~iavpDdaI~~   83 (127)
T PF10727_consen    8 AARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA-ILDLEEILR--DADLVFIAVPDDAIAE   83 (127)
T ss_dssp             ----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHHH
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc-ccccccccc--cCCEEEEEechHHHHH
Confidence            45688999999 99999999999999999886556553211     133333 445777776  7999999999999999


Q ss_pred             HHHHHHHc---CCcEEEEecCCCChhH
Q 020101          115 AILEAMEA---ELDLVVCITEGIPQHD  138 (331)
Q Consensus       115 ~v~~~~~~---Gi~~ivi~t~G~~e~~  138 (331)
                      +++++...   .-..+|+-++|--..+
T Consensus        84 va~~La~~~~~~~g~iVvHtSGa~~~~  110 (127)
T PF10727_consen   84 VAEQLAQYGAWRPGQIVVHTSGALGSD  110 (127)
T ss_dssp             HHHHHHCC--S-TT-EEEES-SS--GG
T ss_pred             HHHHHHHhccCCCCcEEEECCCCChHH
Confidence            99999887   2456788888864433

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.86  E-value=6.5e-05  Score=72.78  Aligned_cols=115  Identities=24%  Similarity=0.278  Sum_probs=77.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH-H
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI-L  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v-~  117 (331)
                      ..+|+|||. |++|+.++++|++.|++++....+.....   ...|+... +++++.+  ..|++++++|+....+++ +
T Consensus        17 gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~~V~~~   92 (330)
T PRK05479         17 GKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQAEVYEE   92 (330)
T ss_pred             CCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHHHHHHH
Confidence            456888999 99999999999999998764433322101   12466655 7888887  789999999999888887 4


Q ss_pred             HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101          118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus       118 ~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      +...+ .-..+++++.||+-......   ..+...+-.+.||+.|..
T Consensus        93 ~I~~~Lk~g~iL~~a~G~~i~~~~~~---p~~~~~Vi~vaPn~Pg~~  136 (330)
T PRK05479         93 EIEPNLKEGAALAFAHGFNIHFGQIV---PPADVDVIMVAPKGPGHL  136 (330)
T ss_pred             HHHhcCCCCCEEEECCCCChhhceec---cCCCCcEEEeCCCCCchh
Confidence            44432 22346689999975543211   112334555669977653

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.77  E-value=0.00019  Score=67.31  Aligned_cols=110  Identities=12%  Similarity=0.114  Sum_probs=81.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCC-ce-ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TE-HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g-~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ..||+|||+ |.+|+.+.+.+.+.   ++++++..++.... +. ....+++.+++++..+ ++|++|=|-+++.+.+..
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~   79 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHA   79 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHH
Confidence            367999999 99999999988753   47777554443210 11 2337889999997432 799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCC-CChhH-HHHHHHHHhccCCcEEE
Q 020101          117 LEAMEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTRLV  155 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G-~~e~~-~~~l~~~a~~~~gi~vi  155 (331)
                      ..++++|+..++ ++.| |.+++ .++|.+.| +++|-++.
T Consensus        80 ~~iL~~g~dlvv-~SvGALaD~~~~~~l~~~A-~~~g~~i~  118 (267)
T PRK13301         80 EGCLTAGLDMII-CSAGALADDALRARLIAAA-EAGGARIR  118 (267)
T ss_pred             HHHHhcCCCEEE-EChhHhcCHHHHHHHHHHH-HhCCCEEE
Confidence            999999999854 6776 55544 45677776 66665544

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.73  E-value=0.00025  Score=64.71  Aligned_cols=107  Identities=16%  Similarity=0.235  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      +|.|||+ |.+|+.+.+.+++.  ++++++..|..... +   .-.+.++..+++|+..  .+|+++=+..++++.+.+.
T Consensus         2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~   78 (255)
T COG1712           2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREYVP   78 (255)
T ss_pred             eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHHhH
Confidence            6889999 99999999988865  57877665554411 1   1235555688999986  7999999999999999999


Q ss_pred             HHHHcCCcEEEEecCC-CChhHHH-HHHHHHhccCCcEEE
Q 020101          118 EAMEAELDLVVCITEG-IPQHDMV-RVKAALNNQSKTRLV  155 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G-~~e~~~~-~l~~~a~~~~gi~vi  155 (331)
                      +++++|++.++ ++.| +++++.. ++.+.+ +..+-++-
T Consensus        79 ~~L~~g~d~iV-~SVGALad~~l~erl~~la-k~~~~rv~  116 (255)
T COG1712          79 KILKAGIDVIV-MSVGALADEGLRERLRELA-KCGGARVY  116 (255)
T ss_pred             HHHhcCCCEEE-EechhccChHHHHHHHHHH-hcCCcEEE
Confidence            99999999866 5666 6776654 555666 66665544

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.73  E-value=0.00012  Score=69.56  Aligned_cols=123  Identities=16%  Similarity=0.260  Sum_probs=87.2

Q ss_pred             CCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC---ceecCcccccCHHHhhhcCCCCEEEEecC
Q 020101           32 PPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        32 ~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g---~~i~G~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      ++++ +|..  .+|+|||. |..|+.+..||++.|.+++.++-+....   .+-.|+.+|+ ++|+..  ..|++++.+|
T Consensus        11 a~l~-~Lkg--K~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~-v~ea~k--~ADvim~L~P   83 (338)
T COG0059          11 ADLD-LLKG--KKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYT-VEEAAK--RADVVMILLP   83 (338)
T ss_pred             CChh-HhcC--CeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeec-HHHHhh--cCCEEEEeCc
Confidence            4566 6644  46788999 9999999999999999977677665420   1247888776 777776  7899999999


Q ss_pred             hhhHHHHHHHHHHcC--CcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          109 PPFAAAAILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       109 ~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      .+...++.++-++-.  -..++.|+.||+-.-..  .+- .+.-.+-++.|-|.|-..
T Consensus        84 De~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~--i~p-pkdvdV~MVAPKgPG~~V  138 (338)
T COG0059          84 DEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL--IVP-PKDVDVIMVAPKGPGHLV  138 (338)
T ss_pred             hhhHHHHHHHHhhhhhcCCceEEeccccceecce--ecC-CccCcEEEEcCCCCcHHH
Confidence            999999888666533  23457799999753211  111 134456678888887443

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.73  E-value=0.00019  Score=68.54  Aligned_cols=115  Identities=19%  Similarity=0.210  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCcccccCHHHhhhcC-CCCEEEEecChh-hHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~sl~dl~~~~-~iDlaii~vp~~-~~~~~v~~  118 (331)
                      +|++||. |+||+.+.++|.+.|++++ ..|+.... +  .-.|...+.+++|+.+.. ++|++++++|+. .+.++++.
T Consensus         2 ~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~   79 (301)
T PRK09599          2 QLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE   79 (301)
T ss_pred             EEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence            6889999 9999999999999999876 66765410 1  124777888999887631 379999999987 66666666


Q ss_pred             HHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCCCCc
Q 020101          119 AMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGV  162 (331)
Q Consensus       119 ~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc~Gi  162 (331)
                      +... .- +.++..+++. .+...++.+.+ ++.|++++ .|.+-|.
T Consensus        80 l~~~l~~g~ivid~st~~-~~~~~~~~~~~-~~~g~~~~dapvsG~~  124 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSY-YKDDIRRAELL-AEKGIHFVDVGTSGGV  124 (301)
T ss_pred             HHhhCCCCCEEEeCCCCC-hhHHHHHHHHH-HHcCCEEEeCCCCcCH
Confidence            5543 11 3344444444 34455566666 67888865 4555443

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.71  E-value=0.00016  Score=68.99  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcC-CCCEEEEecChh-hHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~-~iDlaii~vp~~-~~~~~v~~  118 (331)
                      +|.+||. |+||..+.+++.+.|++++ ..|++... +.  -.|...+.+.+++.++. +.|++++++|++ .+.++++.
T Consensus         2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~   79 (299)
T PRK12490          2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD   79 (299)
T ss_pred             EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence            5889999 9999999999999999876 56765411 11  24778888999987631 269999999998 66777766


Q ss_pred             HHHcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          119 AMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       119 ~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +...- -..+|+-.+..+.....++.+.+ +++|++++-
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~-~~~g~~~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEEL-AERGIHYVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHH-HHcCCeEEe
Confidence            55432 23345444444455555666655 567777653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.68  E-value=0.00029  Score=67.18  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhc-CCCCEEEEecChhhHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +|.|||. |+||..+.++|.+.|++++ ..|++... +.  -.|...+.+++++.+. ..+|++++++|+..+.++++++
T Consensus         2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l   79 (298)
T TIGR00872         2 QLGLIGL-GRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL   79 (298)
T ss_pred             EEEEEcc-hHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence            5889999 9999999999999999876 56665410 11  1355666777776542 2589999999999888888776


Q ss_pred             HHcC-C-cEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101          120 MEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (331)
Q Consensus       120 ~~~G-i-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~  160 (331)
                      ...- - +.++..+++.+ .+..++.+.+ ++.|++++.-.-.
T Consensus        80 ~~~l~~g~ivid~st~~~-~~t~~~~~~~-~~~g~~~vda~vs  120 (298)
T TIGR00872        80 APTLEKGDIVIDGGNSYY-KDSLRRYKLL-KEKGIHLLDCGTS  120 (298)
T ss_pred             HhhCCCCCEEEECCCCCc-ccHHHHHHHH-HhcCCeEEecCCC
Confidence            6431 2 33343444433 3444444444 5778887754333

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.64  E-value=0.00039  Score=65.87  Aligned_cols=109  Identities=16%  Similarity=0.164  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH---
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI---  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v---  116 (331)
                      .+|.|||+ |.||..+.+.+.+.|++++ ..|++... +.  -.|.....+++++.+  +.|++++++|.....+.+   
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~~   78 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVALG   78 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHcC
Confidence            36889999 9999999999999999876 67776410 11  246667778888877  789999999976654433   


Q ss_pred             -HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 -LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 -~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                       +.+... .-..+|+-.+..+....+++.+.+ ++.|+.++-
T Consensus        79 ~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~-~~~g~~~~d  119 (296)
T PRK11559         79 ENGIIEGAKPGTVVIDMSSIAPLASREIAAAL-KAKGIEMLD  119 (296)
T ss_pred             cchHhhcCCCCcEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence             222322 223344434444555566666666 456766553

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.63  E-value=0.00015  Score=59.93  Aligned_cols=88  Identities=17%  Similarity=0.191  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC-CCceec-Ccc---------ccc-CHHHhhhcCCCCEEEEecChh
Q 020101           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEHL-GLP---------VFN-TVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~-~g~~i~-G~p---------~y~-sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ||+|+||+|..|+.+++.|.++ .++++..+..+. .|+.+. ..|         +-+ +.+++ .  ++|+++.|+|..
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S--DVDVVFLALPHG   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T--TESEEEE-SCHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h--cCCEEEecCchh
Confidence            6899999999999999999986 578776666555 444321 111         111 23333 3  799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      .+.+.+..+++.|++. +=.++-|.
T Consensus        78 ~~~~~~~~~~~~g~~V-iD~s~~~R  101 (121)
T PF01118_consen   78 ASKELAPKLLKAGIKV-IDLSGDFR  101 (121)
T ss_dssp             HHHHHHHHHHHTTSEE-EESSSTTT
T ss_pred             HHHHHHHHHhhCCcEE-EeCCHHHh
Confidence            9999999999999964 55666663

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.61  E-value=0.00018  Score=62.65  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=74.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC---ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g---~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      +..+|+|+|. |+.|+.+..||++.|++++.+..+....   .+..|+.+++ ++|..+  ..|++++.+|.+...++.+
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~-~~eAv~--~aDvV~~L~PD~~q~~vy~   78 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMS-VAEAVK--KADVVMLLLPDEVQPEVYE   78 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCE-HHHHHH--C-SEEEE-S-HHHHHHHHH
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeecc-HHHHHh--hCCEEEEeCChHHHHHHHH
Confidence            3456788999 9999999999999999977566665411   1257888874 777776  6899999999999999886


Q ss_pred             HHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          118 EAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       118 ~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      +-++.  .....++|+.||+-.-. .+. - .+.-++-++.|...|-..
T Consensus        79 ~~I~p~l~~G~~L~fahGfni~~~-~i~-p-p~~vdV~mvAPKgpG~~v  124 (165)
T PF07991_consen   79 EEIAPNLKPGATLVFAHGFNIHYG-LIK-P-PKDVDVIMVAPKGPGHLV  124 (165)
T ss_dssp             HHHHHHS-TT-EEEESSSHHHHCT-TS-----TTSEEEEEEESSSCHHH
T ss_pred             HHHHhhCCCCCEEEeCCcchhhcC-ccc-C-CCCCeEEEEecCCCChHH
Confidence            66653  34567889999963211 111 1 123445677888776443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.59  E-value=0.0002  Score=56.16  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCCc----eecCccccc-CHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGT----EHLGLPVFN-TVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g~----~i~G~p~y~-sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      ||++||+ |+||+.+.+.+.+.|   .++....+++....    +..+..++. +..|+.+  +.|++++++||....++
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v   77 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEV   77 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHH
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHH
Confidence            5788999 999999999999988   67662335554111    134556666 7888887  68999999999999999


Q ss_pred             HHHH
Q 020101          116 ILEA  119 (331)
Q Consensus       116 v~~~  119 (331)
                      +++.
T Consensus        78 ~~~i   81 (96)
T PF03807_consen   78 LSEI   81 (96)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9988

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.59  E-value=0.00022  Score=68.70  Aligned_cols=111  Identities=22%  Similarity=0.189  Sum_probs=72.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee----------cC------cccccCHHHhhhcCCCCEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LG------LPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i----------~G------~p~y~sl~dl~~~~~iDlai  104 (331)
                      .++|+|+|+ |.||..+...|.+.|+++. .+++.... +.+          .|      +....++++..+  +.|+++
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi   79 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAV   79 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEE
Confidence            457999999 9999999999999999866 66664310 001          13      234457777665  789999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCChhH--HHHHHHHHhcc---CCcE-EEccCC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHD--MVRVKAALNNQ---SKTR-LVGPNC  159 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~--~~~l~~~a~~~---~gi~-viGPnc  159 (331)
                      +++|...+.++++.+. .+. .++.++.|+..++  .+++.+.. .+   .++. +.|||.
T Consensus        80 ~~v~~~~~~~v~~~l~-~~~-~vi~~~~Gi~~~~~~~~~l~~~l-~~~~~~~~~~~~gP~~  137 (328)
T PRK14618         80 VAVPSKALRETLAGLP-RAL-GYVSCAKGLAPDGGRLSELARVL-EFLTQARVAVLSGPNH  137 (328)
T ss_pred             EECchHHHHHHHHhcC-cCC-EEEEEeeccccCCCccchHHHHH-HHhcCCCeEEEECccH
Confidence            9999998877775543 333 4566788876433  33444443 22   4443 556663

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00045  Score=68.29  Aligned_cols=108  Identities=10%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce------------ecCcccccCHHHhhhcCCCCEEEEecC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE------------HLGLPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~------------i~G~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      .+|+|+|+ |+.|+.++..|.+.+ ++|. ..+.+... ..            ...+--.+.+.++..  +.|++|.+.|
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p   77 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP   77 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence            46889999 999999999988876 7765 54444210 01            112222335667777  5699999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      +.....+++.|++.|++.+= .+  +.++...++.+.+ +++|+.++ |+|
T Consensus        78 ~~~~~~i~ka~i~~gv~yvD-ts--~~~~~~~~~~~~a-~~Agit~v-~~~  123 (389)
T COG1748          78 PFVDLTILKACIKTGVDYVD-TS--YYEEPPWKLDEEA-KKAGITAV-LGC  123 (389)
T ss_pred             chhhHHHHHHHHHhCCCEEE-cc--cCCchhhhhhHHH-HHcCeEEE-ccc
Confidence            99999999999999999833 23  2222225555666 67787755 444

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.57  E-value=0.00045  Score=67.24  Aligned_cols=121  Identities=19%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHH--------cC--CeEEEEeCCCC-----CCcee---------cC-cccc-------c
Q 020101           42 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKK-----GGTEH---------LG-LPVF-------N   89 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~--------~g--~~iv~~VnP~~-----~g~~i---------~G-~p~y-------~   89 (331)
                      .++|+|+|+ |+.|+.+++.+.+        +|  +++++..|.+.     .|-.+         .| +.-|       +
T Consensus         2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            378999999 9999988776554        46  56776655321     01000         01 1111       1


Q ss_pred             -CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101           90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (331)
Q Consensus        90 -sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p  165 (331)
                       +++++..+.++|++|.+++++.+.+...++++.|++. |..+.|.--...+++.+.+ ++++..+.=..+.+.=-|
T Consensus        81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~V-VtanK~~la~~~~el~~la-~~~~~~~~~ea~v~~GiP  155 (336)
T PRK08374         81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSV-VTSNKPPIAFHYDELLDLA-NERNLPYLFEATVMAGTP  155 (336)
T ss_pred             CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcE-EECCHHHHHhCHHHHHHHH-HHcCCeEEEeccccccCC
Confidence             5677765457999999999999999999999999997 4345552112334566666 678877664444433333

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.55  E-value=0.00039  Score=64.79  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=69.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .+|+|||+ |++|+.+.+.+.+.|   .++. .++++... +   +..|+.+..+.+++..  +.|++++++|+..+.++
T Consensus         3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v~-v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v   78 (267)
T PRK11880          3 KKIGFIGG-GNMASAIIGGLLASGVPAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEV   78 (267)
T ss_pred             CEEEEEec-hHHHHHHHHHHHhCCCCcceEE-EEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHH
Confidence            46889999 999999999988877   4444 67776411 1   1136677778888766  68999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHH
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMV  140 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~  140 (331)
                      ++++....-+.++-++.|++.+..+
T Consensus        79 ~~~l~~~~~~~vvs~~~gi~~~~l~  103 (267)
T PRK11880         79 LSELKGQLDKLVVSIAAGVTLARLE  103 (267)
T ss_pred             HHHHHhhcCCEEEEecCCCCHHHHH
Confidence            9987664224566677888755443

>PLN02256 arogenate dehydrogenase

Probab=97.55  E-value=0.00052  Score=65.85  Aligned_cols=103  Identities=15%  Similarity=0.212  Sum_probs=73.4

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCccc-ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcc
Q 020101           10 VRSLYMSSEICCGQSRSFTTAPPPAPA-VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLP   86 (331)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p   86 (331)
                      -|||-.- -|-..|.-.|+..   |.. +=.++..+|+|||+ |.||..+.+.+.+.|++++ ++++.....  ...|+.
T Consensus         7 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~   80 (304)
T PLN02256          7 PRSLRVR-AIDAAQPFDYESR---LQEELEKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVS   80 (304)
T ss_pred             CCCcccc-cccccCCCChHhH---HhHhhccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCe
Confidence            3444332 3445566566554   333 33677889999998 9999999999998888877 677664111  124677


Q ss_pred             cccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        87 ~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      .+.+++++... ++|++++++|++...+++++.
T Consensus        81 ~~~~~~e~~~~-~aDvVilavp~~~~~~vl~~l  112 (304)
T PLN02256         81 FFRDPDDFCEE-HPDVVLLCTSILSTEAVLRSL  112 (304)
T ss_pred             eeCCHHHHhhC-CCCEEEEecCHHHHHHHHHhh
Confidence            77888887531 589999999999999999887

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.54  E-value=0.00056  Score=64.72  Aligned_cols=109  Identities=14%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHH-HH---
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AI---  116 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~-~v---  116 (331)
                      +|.|||. |+||..+.+.+.+.|++++ .+|++...-   .-.|.....+.+++.+  +.|++++++|.....+ ++   
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~~   76 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFGE   76 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence            3788999 9999999999999999876 677764100   1235666778888877  7899999999865443 33   


Q ss_pred             HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101          117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       117 ~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP  157 (331)
                      +.+... .-..+|+-.+..+....+++.+.+ ++.|+.++.+
T Consensus        77 ~~~~~~~~~g~iivd~st~~~~~~~~l~~~l-~~~g~~~~~~  117 (291)
T TIGR01505        77 NGIIEGAKPGKTLVDMSSISPIESKRFAKAV-KEKGIDYLDA  117 (291)
T ss_pred             chHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEec
Confidence            223322 222334434445555566677666 5667777763

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.54  E-value=0.00082  Score=63.38  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCC--ce---ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g--~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ..+|.+||+ |+||..+++.+.+.|    .+++ ..|+....  +.   ..|+....+..++.+  +.|++++++|++..
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~   78 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDV   78 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHH
Confidence            457999998 999999999998876    4555 66764310  11   236777778888776  68999999999999


Q ss_pred             HHHHHHHHHc-CC-cEEEEecCCCChhHHHH
Q 020101          113 AAAILEAMEA-EL-DLVVCITEGIPQHDMVR  141 (331)
Q Consensus       113 ~~~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~  141 (331)
                      .++++..... .- +.++-+..|++.+..++
T Consensus        79 ~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~  109 (279)
T PRK07679         79 AEALIPFKEYIHNNQLIISLLAGVSTHSIRN  109 (279)
T ss_pred             HHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence            9999887643 12 34444568997666554

>PRK06091 membrane protein FdrA; Validated

Probab=97.52  E-value=0.039  Score=56.84  Aligned_cols=250  Identities=17%  Similarity=0.145  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--CceecCcccccCHHHhhhcCCCCEEEEec--ChhhHHH-HHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYV--PPPFAAA-AIL  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~~i~G~p~y~sl~dl~~~~~iDlaii~v--p~~~~~~-~v~  117 (331)
                      =+|+||+.||.+++.++..+.+.|.-+-..|.-...  .+++.|+..-.-++-+.++++.++++++.  |.+...+ .++
T Consensus       194 G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~fl~  273 (555)
T PRK06091        194 GNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIIN  273 (555)
T ss_pred             CCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHHHH
Confidence            347889999999988888887765443333443320  01233554444456655556788999888  3344444 334


Q ss_pred             HHHHcCCcEEEEecCCCChh-----------HHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEE
Q 020101          118 EAMEAELDLVVCITEGIPQH-----------DMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIV  186 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~-----------~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~vali  186 (331)
                      .+-+.+.+. |++-.|-++.           +.+++.+.+..-.+......+              .  ..+..+.|==+
T Consensus       274 aar~~~KPV-Vvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~--------------~--~~~~~~~irGl  336 (555)
T PRK06091        274 AMKATGKPV-VALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTAQRNA--------------I--LPVSQGFICGL  336 (555)
T ss_pred             HHhhCCCCE-EEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc--------------c--ccccCCeeEEE
Confidence            344456555 5566665542           233444433111111111100              1  01233344344


Q ss_pred             ecChHHHHHHHHHHHhCCCCce----------------EEEecCCCCC------CCCCH---HHHHHHhhcCCCccEEEE
Q 020101          187 SRSGTLTYEAVFQTTAVGLGQS----------------TCVGIGGDPF------NGTNF---VDCVTKFIADPQTEGIIL  241 (331)
Q Consensus       187 sQSG~~~~~~~~~~~~~g~g~s----------------~~vs~Gn~~~------~~v~~---~d~l~~l~~Dp~T~~I~l  241 (331)
                      .--|+++.+.+ .+.+...++.                .+|-+|-+.|      +-++.   .+.|.-..+||+|.+|+|
T Consensus       337 y~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~Vill  415 (555)
T PRK06091        337 YTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLL  415 (555)
T ss_pred             ecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEE
Confidence            45688998877 5544444432                3555555432      22333   355666788999999999


Q ss_pred             EEc-cCCCcHHHHHHHHHHh------C---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeC
Q 020101          242 IGE-IGGTAEEDAAALIKES------G---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVE  311 (331)
Q Consensus       242 y~E-~~g~~~~~~~~f~~a~------r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~  311 (331)
                      -+. +.|.++.-+..++.++      +   +.-+||+...|+-.. -.              +.+.-.+.|+++|+++++
T Consensus       416 D~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D-pQ--------------~~~~q~~~L~~aGv~v~~  480 (555)
T PRK06091        416 DVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD-PQ--------------CRSQQIATLEDAGIAVVD  480 (555)
T ss_pred             EeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC-Cc--------------CHHHHHHHHHhCCeEEEc
Confidence            866 3465544444555543      2   445677777786443 11              234446889999999999


Q ss_pred             CHhHHHHHHHHHHH
Q 020101          312 SPAKIGAAMLEVFK  325 (331)
Q Consensus       312 ~~~el~~~~~a~~~  325 (331)
                      |-.+-..++..+..
T Consensus       481 sn~~a~~~a~~~~~  494 (555)
T PRK06091        481 SLPEATLLAAALIR  494 (555)
T ss_pred             CcHHHHHHHHHHhh
Confidence            99999988887663

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.52  E-value=5.8e-05  Score=61.76  Aligned_cols=104  Identities=15%  Similarity=0.141  Sum_probs=71.8

Q ss_pred             cCCCCCCcHHHHHHHHc----CCeEEEEeCCC--CCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           49 GITGKNGTFHTEQAIEY----GTKMVGGVTPK--KGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        49 Gasgk~G~~~~~~l~~~----g~~iv~~VnP~--~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      |+ |++|+.+++.+.+.    ++++++..|.+  ....   ...+...+.+++++.+..++|++|.+++++.+.+.++++
T Consensus         1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~   79 (117)
T PF03447_consen    1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA   79 (117)
T ss_dssp             ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence            55 88999999988764    67888777776  1001   123456777899998756799999999999999999999


Q ss_pred             HHcCCcEEEEecCC-CC-hhHHHHHHHHHhccCCcEEE
Q 020101          120 MEAELDLVVCITEG-IP-QHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G-~~-e~~~~~l~~~a~~~~gi~vi  155 (331)
                      +++|++.+. .+-+ ++ .....+|.++| +++|.++.
T Consensus        80 L~~G~~VVt-~nk~ala~~~~~~~L~~~A-~~~g~~~~  115 (117)
T PF03447_consen   80 LERGKHVVT-ANKGALADEALYEELREAA-RKNGVRIY  115 (117)
T ss_dssp             HHTTCEEEE-S-HHHHHSHHHHHHHHHHH-HHHT-EEE
T ss_pred             HHCCCeEEE-ECHHHhhhHHHHHHHHHHH-HHcCCEEE
Confidence            999999733 3333 32 23456777777 78777653

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.51  E-value=0.00064  Score=58.73  Aligned_cols=110  Identities=16%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC----------------C-ceecCcccccCHHHhhhcCCCCEEEEe
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------------G-TEHLGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~----------------g-~~i~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      ||+|+|+ |++|.++...+.+.|.++. ...++..                + +-...+.+.++++++.+  +.|+++++
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiia   76 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIA   76 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEec
Confidence            5889999 9999999999999987754 4333210                0 00123456678988887  78999999


Q ss_pred             cChhhHHHHHHHHHHc--CCcEEEEecCCCChhH---H-HHHHHHHhccCCcE-EEccC
Q 020101          107 VPPPFAAAAILEAMEA--ELDLVVCITEGIPQHD---M-VRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~--Gi~~ivi~t~G~~e~~---~-~~l~~~a~~~~gi~-viGPn  158 (331)
                      +|...+.++++++...  .-+.+++.+-||....   . +.+.+.. ....+. +.||+
T Consensus        77 vPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~-~~~~~~~lsGP~  134 (157)
T PF01210_consen   77 VPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL-PIPRIAVLSGPS  134 (157)
T ss_dssp             S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH-SSCGEEEEESS-
T ss_pred             ccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh-hhcceEEeeCcc
Confidence            9999999999988762  2344566777983221   2 2233333 333344 55777

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07680 late competence protein ComER; Validated

Probab=97.49  E-value=0.00054  Score=64.34  Aligned_cols=107  Identities=19%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCc-----eecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~-----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +|.|||+ |+||..+.+.|.+.|+   ..+...|++....     ...|+..+.+..++..  +.|++++++|+..+.++
T Consensus         2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v   78 (273)
T PRK07680          2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL   78 (273)
T ss_pred             EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence            5789998 9999999999988774   2233677754110     1126777778888766  68999999999999999


Q ss_pred             HHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101          116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       116 v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      ++++...  .-+.++-++.|.+-+.   |.+.. ..+.++++ ||
T Consensus        79 l~~l~~~l~~~~~iis~~ag~~~~~---L~~~~-~~~~~r~~-p~  118 (273)
T PRK07680         79 LQKLAPHLTDEHCLVSITSPISVEQ---LETLV-PCQVARII-PS  118 (273)
T ss_pred             HHHHHhhcCCCCEEEEECCCCCHHH---HHHHc-CCCEEEEC-CC
Confidence            9886542  1245566777775333   33333 33345555 55

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.47  E-value=0.00041  Score=66.20  Aligned_cols=92  Identities=20%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee----------------cCcccccCHHHhhhcCCCCEEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i----------------~G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      .+|+|+|+ |.||..+...|.+.|+++. .+++.... +.+                .+.....+++++.+  +.|++++
T Consensus         2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi~   77 (325)
T PRK00094          2 MKIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLILV   77 (325)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEEE
Confidence            36899999 9999999999999898854 55543210 000                13444567777766  7899999


Q ss_pred             ecChhhHHHHHHHHHHc-CC-cEEEEecCCCChhH
Q 020101          106 YVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHD  138 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~~  138 (331)
                      ++|+....++++++... .- +.+|.++.|+..+.
T Consensus        78 ~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~  112 (325)
T PRK00094         78 AVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGT  112 (325)
T ss_pred             eCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCC
Confidence            99999888888776653 21 34455666886543

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=97.44  E-value=0.002  Score=63.74  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=87.5

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI  257 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~  257 (331)
                      ..|+|++|+..|+++...++.+...|.-..-++-+|+.+ ..-.+.+.++-+.+||++++|++++-+. .+...-++.+.
T Consensus       255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~  333 (386)
T TIGR01016       255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLV  333 (386)
T ss_pred             cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence            579999999999999999999999988887888877654 2556788999999999999999875531 11112233333


Q ss_pred             HHhC-C--CCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q 020101          258 KESG-T--EKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAML  321 (331)
Q Consensus       258 ~a~r-~--~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~~~~  321 (331)
                      ++.+ .  +|||++.-.|.                    ..+.....|+++|  +...+++++-...+-
T Consensus       334 ~a~~~~~~~kPvvv~~~g~--------------------~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~  382 (386)
T TIGR01016       334 EALKEVGVNVPVVVRLEGT--------------------NVEEGKKILAESGLNIIFATSMEEAAEKAV  382 (386)
T ss_pred             HHHHhcCCCCcEEEEeCCc--------------------cHHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence            4433 3  39997765441                    2244567799999  888888887555544

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.43  E-value=0.0012  Score=61.72  Aligned_cols=95  Identities=20%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      ..+|+|||+ |+||..+.+.+.+.+.   +-+...+|+.  +. .+.....+..++.+  +.|++++++||....+++++
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~   76 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLE   76 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHH
Confidence            357999999 9999999999887652   2233778765  22 24444556666665  68999999999999999998


Q ss_pred             HHHc-CCcEEEEecCCCChhHHHHH
Q 020101          119 AMEA-ELDLVVCITEGIPQHDMVRV  142 (331)
Q Consensus       119 ~~~~-Gi~~ivi~t~G~~e~~~~~l  142 (331)
                      +... +-+.+|....|++.+..+++
T Consensus        77 i~~~l~~~~iIS~~aGi~~~~l~~~  101 (260)
T PTZ00431         77 IKPYLGSKLLISICGGLNLKTLEEM  101 (260)
T ss_pred             HHhhccCCEEEEEeCCccHHHHHHH
Confidence            7642 23566778889986665543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.39  E-value=0.0014  Score=61.89  Aligned_cols=93  Identities=18%  Similarity=0.265  Sum_probs=67.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCCc--e----ecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGT--E----HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g~--~----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +|.|||+ |+||+.+.+.+.+.|    .+++ .++++....  .    ..+..+..+..++.+  +.|++++++|++.+.
T Consensus         3 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~~   78 (277)
T PRK06928          3 KIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAVL   78 (277)
T ss_pred             EEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHHH
Confidence            5889998 999999999998876    4565 566543101  1    113444567777766  789999999999999


Q ss_pred             HHHHHHHH---cCCcEEEEecCCCChhHHHH
Q 020101          114 AAILEAME---AELDLVVCITEGIPQHDMVR  141 (331)
Q Consensus       114 ~~v~~~~~---~Gi~~ivi~t~G~~e~~~~~  141 (331)
                      ++++++..   .+ +.++.++.|++.+++++
T Consensus        79 ~vl~~l~~~l~~~-~~ivS~~aGi~~~~l~~  108 (277)
T PRK06928         79 PLLKDCAPVLTPD-RHVVSIAAGVSLDDLLE  108 (277)
T ss_pred             HHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence            99988754   23 34566888998776554

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.38  E-value=0.00094  Score=63.25  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=74.0

Q ss_pred             EEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH---HHH
Q 020101           47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI---LEA  119 (331)
Q Consensus        47 IvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v---~~~  119 (331)
                      +||. |+||..+.++|.+.|++++ ..|+.... +.  ..|.....+.+++.+  +.|++++++|+.. +.+++   +..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l   76 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGI   76 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchH
Confidence            4788 9999999999999999866 66766411 11  246667778888887  7899999999844 45555   344


Q ss_pred             HHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       120 ~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ... .-..+|+-.++++.+..+++.+.+ +++|++++.
T Consensus        77 ~~~~~~g~~vid~st~~p~~~~~~~~~~-~~~g~~~vd  113 (288)
T TIGR01692        77 LPKVAKGSLLIDCSTIDPDSARKLAELA-AAHGAVFMD  113 (288)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence            432 223455556677777777887777 677888764

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=97.37  E-value=0.0032  Score=62.31  Aligned_cols=122  Identities=17%  Similarity=0.248  Sum_probs=86.3

Q ss_pred             CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-CCCcHHHHHHHHH
Q 020101          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI-GGTAEEDAAALIK  258 (331)
Q Consensus       180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~-~g~~~~~~~~f~~  258 (331)
                      .|+|++|+.+|+++...++.+...|....-.+-+|..+ ..-.+.+.|+.+.+||++.+|++.+=+ ......-++.+.+
T Consensus       256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~  334 (388)
T PRK00696        256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA  334 (388)
T ss_pred             CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            58999999999999999999998988666677765543 355678899999999999999876432 1111122333333


Q ss_pred             HhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHHH
Q 020101          259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLE  322 (331)
Q Consensus       259 a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~~~~a  322 (331)
                      +.+   ..|||++.-.| .                   ..+.....|+++|  +...+++++-..++..
T Consensus       335 ~~~~~~~~kPvv~~~~g-~-------------------~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~  383 (388)
T PRK00696        335 AVKEVGVTVPLVVRLEG-T-------------------NVELGKKILAESGLNIIAADTLDDAAQKAVE  383 (388)
T ss_pred             HHHhcCCCCcEEEEeCC-C-------------------CHHHHHHHHHHCCCCceecCCHHHHHHHHHH
Confidence            333   47999766544 1                   1244567799999  8899999987666653

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.37  E-value=0.00056  Score=66.04  Aligned_cols=116  Identities=22%  Similarity=0.310  Sum_probs=78.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE-  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~-  118 (331)
                      ..+|+|||. |++|+.++++|+..|++++...+|....+  ...|..++ +++|+..  ..|++++.+|.+....++.+ 
T Consensus        16 gKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         16 GKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHHHHHHHH
Confidence            455788999 99999999999999999874444432101  13466544 8999988  78999999998777777643 


Q ss_pred             HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          119 AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       119 ~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      ... ..-..+++|+.||+-.-. .+. - -+.-++-++.|-+.|-..
T Consensus        92 il~~MK~GaiL~f~hgfni~~~-~i~-p-p~~vdv~mvaPKgpG~~v  135 (335)
T PRK13403         92 VEENLREGQMLLFSHGFNIHFG-QIN-P-PSYVDVAMVAPKSPGHLV  135 (335)
T ss_pred             HHhcCCCCCEEEECCCcceecC-cee-C-CCCCeEEEECCCCCChHH
Confidence            332 344567889999974321 111 0 134445677888777443

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.36  E-value=0.001  Score=61.93  Aligned_cols=93  Identities=18%  Similarity=0.255  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC----eEEEEe-CCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT----KMVGGV-TPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~----~iv~~V-nP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +|.+||+ |+||..+.+.|.+.|+    +++ .. |++....+   -.|+....+..++.+  +.|++++++|++.+.++
T Consensus         2 kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~v   77 (266)
T PLN02688          2 RVGFIGA-GKMAEAIARGLVASGVVPPSRIS-TADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDV   77 (266)
T ss_pred             eEEEECC-cHHHHHHHHHHHHCCCCCcceEE-EEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHH
Confidence            5889998 9999999999998887    665 55 76542111   247777788888776  68999999999999999


Q ss_pred             HHHHHHc-CC-cEEEEecCCCChhHHH
Q 020101          116 ILEAMEA-EL-DLVVCITEGIPQHDMV  140 (331)
Q Consensus       116 v~~~~~~-Gi-~~ivi~t~G~~e~~~~  140 (331)
                      ++++... .- +.+|-.+.|.+.++.+
T Consensus        78 l~~l~~~~~~~~~iIs~~~g~~~~~l~  104 (266)
T PLN02688         78 LTELRPLLSKDKLLVSVAAGITLADLQ  104 (266)
T ss_pred             HHHHHhhcCCCCEEEEecCCCcHHHHH
Confidence            8877542 22 3344456787655544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.33  E-value=0.0013  Score=62.14  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC----eEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~----~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      .+|.+||+ |+||..+.+.|.+.|+    +++ ..|++... +.   -.|+..+.+..++..  +.|++++++||+...+
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~   78 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSS   78 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHH
Confidence            46889999 9999999999998774    344 77876521 11   246667778888776  6899999999999999


Q ss_pred             HHHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          115 AILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       115 ~v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      ++++....  +=+.++=+..|++-++++++..   ....+-=+-||.
T Consensus        79 vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~---~~~~vvR~MPN~  122 (272)
T PRK12491         79 VINQIKDQIKNDVIVVTIAAGKSIKSTENEFD---RKLKVIRVMPNT  122 (272)
T ss_pred             HHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC---CCCcEEEECCCh
Confidence            99887642  2234454778998776654321   122343345884

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.31  E-value=0.0015  Score=62.25  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHH--
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL--  117 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~--  117 (331)
                      +|.|||. |+||....+++.+.|+++. .+|++...- .  -.|.....+..++.+  +.|++++++|++. +..++.  
T Consensus         3 ~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~~~   78 (296)
T PRK15461          3 AIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLFGE   78 (296)
T ss_pred             eEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence            6888999 9999999999999999876 777765211 1  236667778888877  7899999999986 444432  


Q ss_pred             -HHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccC
Q 020101          118 -EAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN  158 (331)
Q Consensus       118 -~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPn  158 (331)
                       .+... .. +.++..+++ +.+..+++.+.+ ++.|++++ .|-
T Consensus        79 ~~i~~~l~~g~lvid~sT~-~p~~~~~l~~~l-~~~g~~~ldapV  121 (296)
T PRK15461         79 NGVCEGLSRDALVIDMSTI-HPLQTDKLIADM-QAKGFSMMDVPV  121 (296)
T ss_pred             ccHhhcCCCCCEEEECCCC-CHHHHHHHHHHH-HHcCCcEEEccC
Confidence             12221 11 233444444 455556666665 57787765 444

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.29  E-value=0.002  Score=62.23  Aligned_cols=113  Identities=19%  Similarity=0.189  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEe-------------CCCCCCc--eecCcccccCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTK-MVGGV-------------TPKKGGT--EHLGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~V-------------nP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      .+|+|+|+ |.+|+.+.+.+.+.|.+ ..+.-             ||++-..  --.++...++++++.+  +.|++++.
T Consensus         2 ~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv~a   78 (329)
T COG0240           2 MKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIVIA   78 (329)
T ss_pred             ceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEEEE
Confidence            46888999 99999999999998876 33443             3333210  0134566778999987  79999999


Q ss_pred             cChhhHHHHHHHHH---HcCCcEEEEecCCCChhHHHHHHHHHhccCC---cE-EEccCC
Q 020101          107 VPPPFAAAAILEAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSK---TR-LVGPNC  159 (331)
Q Consensus       107 vp~~~~~~~v~~~~---~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g---i~-viGPnc  159 (331)
                      +|.....++++...   ..+.+. ++.+-|+..+..+.+-+.+.+..+   +- +.|||-
T Consensus        79 vPs~~~r~v~~~l~~~l~~~~~i-v~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~  137 (329)
T COG0240          79 VPSQALREVLRQLKPLLLKDAII-VSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF  137 (329)
T ss_pred             CChHHHHHHHHHHhhhccCCCeE-EEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence            99999999998864   455555 557889966543333333322222   33 668885

>PLN02712 arogenate dehydrogenase

Probab=97.27  E-value=0.0019  Score=68.36  Aligned_cols=80  Identities=11%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ..+..+|+|||+ |+||+.+.+.+.+.|++++ ++|+....+  ...|+..+.+++++..+ ..|++++++|+....+++
T Consensus       366 ~~~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi  442 (667)
T PLN02712        366 DGSKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVL  442 (667)
T ss_pred             CCCCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHH
Confidence            446788999998 9999999999999898877 667653101  12466677888887642 489999999999999999


Q ss_pred             HHHHH
Q 020101          117 LEAME  121 (331)
Q Consensus       117 ~~~~~  121 (331)
                      ++...
T Consensus       443 ~~l~~  447 (667)
T PLN02712        443 KSLPF  447 (667)
T ss_pred             HHHHH
Confidence            88764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.26  E-value=0.00092  Score=65.28  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC-CCcee---c----Cc--cccc--CHHHhhhcCCCCEEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEH---L----GL--PVFN--TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~-~g~~i---~----G~--p~y~--sl~dl~~~~~iDlaii~vp~  109 (331)
                      ++|+|+||||..|+.+++.|.++ ++++++.+..+. .|+.+   .    +.  ..+.  +.+++.+  ++|++++++|.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence            47899999999999999999987 678876655443 23322   1    11  1133  3445543  69999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      ..+.+.+.++.++|.+. |-.++.|.
T Consensus        79 ~~s~~~~~~~~~~G~~V-IDlS~~fR  103 (346)
T TIGR01850        79 GVSAELAPELLAAGVKV-IDLSADFR  103 (346)
T ss_pred             hHHHHHHHHHHhCCCEE-EeCChhhh
Confidence            99999999999999665 55677664

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.24  E-value=0.0016  Score=60.58  Aligned_cols=109  Identities=7%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeE--EEEeCCCCCC-ce----ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKM--VGGVTPKKGG-TE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~i--v~~VnP~~~g-~~----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|.|||+ |+||+.+.+.+.+.|+++  +...|++... +.    ..+...+.+.+++.+  +.|++++++|++...+++
T Consensus         2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl   78 (258)
T PRK06476          2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVL   78 (258)
T ss_pred             eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHH
Confidence            5889998 999999999998877542  3355664311 11    225677788888876  689999999999999888


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      +++.-..=+.++-...|.+.+..+++..   ....+-..-||
T Consensus        79 ~~l~~~~~~~vis~~ag~~~~~l~~~~~---~~~~~~r~~P~  117 (258)
T PRK06476         79 RALRFRPGQTVISVIAATDRAALLEWIG---HDVKLVRAIPL  117 (258)
T ss_pred             HHhccCCCCEEEEECCCCCHHHHHHHhC---CCCCEEEECCC
Confidence            7752112234444566776555554321   11233345577

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.23  E-value=0.0015  Score=62.25  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEE-EEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChhhH-HHHHHH-
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAILE-  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv-~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~~v~~-  118 (331)
                      +|.+||. |+||....++|.+.|+++. +-.+|+.  +.  -.|.....+..++.+  +.|++++++|.+.. .+++.. 
T Consensus         2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~   76 (292)
T PRK15059          2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGE   76 (292)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCC
Confidence            5889999 9999999999999999864 2344432  22  246777788888876  78999999998743 443321 


Q ss_pred             --HHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       119 --~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                        +... .-..+|+-.+..+.+..+++.+.+ +++|+.++.
T Consensus        77 ~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~-~~~G~~~vd  116 (292)
T PRK15059         77 NGCTKASLKGKTIVDMSSISPIETKRFARQV-NELGGDYLD  116 (292)
T ss_pred             cchhccCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEE
Confidence              1221 122345555566667777777776 677877554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.18  E-value=0.0036  Score=59.52  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=82.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH-
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE-  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~-  118 (331)
                      +|++||. |.||....++|.+.|+++. ..|.+... .+   ..|...+.+..|..+  ..|++|.++|...+.+.+-. 
T Consensus         2 kIafIGL-G~MG~pmA~~L~~aG~~v~-v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g   77 (286)
T COG2084           2 KIAFIGL-GIMGSPMAANLLKAGHEVT-VYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFG   77 (286)
T ss_pred             eEEEEcC-chhhHHHHHHHHHCCCEEE-EEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhC
Confidence            6889999 9999999999999999865 55544321 11   358899999988887  79999999998777665542 


Q ss_pred             ---HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 020101          119 ---AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP  165 (331)
Q Consensus       119 ---~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc~Gi~~p  165 (331)
                         ..+ .....+||-.+-++.+..+++.+.+ ++.|+.++ .|=+-|....
T Consensus        78 ~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~-~~~G~~~lDAPVsGg~~~A  128 (286)
T COG2084          78 ENGLLEGLKPGAIVIDMSTISPETARELAAAL-AAKGLEFLDAPVSGGVPGA  128 (286)
T ss_pred             ccchhhcCCCCCEEEECCCCCHHHHHHHHHHH-HhcCCcEEecCccCCchhh
Confidence               222 2234455544556677777888777 78887755 6665555443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.12  E-value=0.0037  Score=63.00  Aligned_cols=109  Identities=15%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +|+|||++|.||..+.+.+.+.|++++ .++++... .   ...|+....+..+...  +.|++++++|++...++++++
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l   78 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVI-VTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEV   78 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEE-EEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHH
Confidence            688999779999999999999998865 55544310 0   1246665667777666  689999999999999988887


Q ss_pred             HHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101          120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       120 ~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP  157 (331)
                      ... .-..+++-.........+.+.+..  ..+.++++-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~--~~~~~~V~~  115 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYA--PEGVEILPT  115 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhc--CCCCEEEEc
Confidence            653 223333322223333344444433  335666654

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.08  E-value=0.0026  Score=62.58  Aligned_cols=96  Identities=16%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcC-------Ce-EEEEeCCCCCC-------------ce-e------cCcccccC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYG-------TK-MVGGVTPKKGG-------------TE-H------LGLPVFNT   90 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g-------~~-iv~~VnP~~~g-------------~~-i------~G~p~y~s   90 (331)
                      ..+..+|+|+|+ |.+|+++...+.+.+       .+ ..+.-|+...+             .. .      ..+....+
T Consensus         8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd   86 (365)
T PTZ00345          8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD   86 (365)
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence            345678999999 999999999888765       44 33455543100             00 1      12333456


Q ss_pred             HHHhhhcCCCCEEEEecChhhHHHHHHHHHH--cC--CcEEEEecCCCChh
Q 020101           91 VAEAKAETKANASAIYVPPPFAAAAILEAME--AE--LDLVVCITEGIPQH  137 (331)
Q Consensus        91 l~dl~~~~~iDlaii~vp~~~~~~~v~~~~~--~G--i~~ivi~t~G~~e~  137 (331)
                      ++++.+  +.|++++++|+....++++++..  .-  -..+|.++-|+..+
T Consensus        87 l~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         87 LKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence            777766  78999999999999999999875  21  12456688898643

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.08  E-value=0.0035  Score=60.00  Aligned_cols=82  Identities=15%  Similarity=0.114  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      .+|.|+|+ |+||+.+.+.|.+.|+++. ..|+..  .        .+++++.+  +.|++++++|.+.+.++++.+...
T Consensus         5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~--~--------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~~   70 (308)
T PRK14619          5 KTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRS--G--------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQAL   70 (308)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCC--C--------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHHh
Confidence            56899999 9999999999999999876 777654  1        46777776  789999999999888888776542


Q ss_pred             C--C-cEEEEecCCCChhH
Q 020101          123 E--L-DLVVCITEGIPQHD  138 (331)
Q Consensus       123 G--i-~~ivi~t~G~~e~~  138 (331)
                      .  - ..++..+.|+..+.
T Consensus        71 ~~~~~~ivi~~s~gi~~~~   89 (308)
T PRK14619         71 NLPPETIIVTATKGLDPET   89 (308)
T ss_pred             cCCCCcEEEEeCCcccCCC
Confidence            2  1 23444555776543

>PLN02712 arogenate dehydrogenase

Probab=97.07  E-value=0.0034  Score=66.46  Aligned_cols=77  Identities=12%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      +..+|+|||+ |+||+.+.+.+.+.|++++ ++++.....  ...|+..+.+++++..+ +.|++++++|++...+++++
T Consensus        51 ~~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~~  127 (667)
T PLN02712         51 TQLKIAIIGF-GNYGQFLAKTLISQGHTVL-AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLKS  127 (667)
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHHh
Confidence            3467999998 9999999999999999876 566653111  13577777888886532 58999999999999999888


Q ss_pred             HH
Q 020101          119 AM  120 (331)
Q Consensus       119 ~~  120 (331)
                      ..
T Consensus       128 l~  129 (667)
T PLN02712        128 LP  129 (667)
T ss_pred             hh
Confidence            64

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.07  E-value=0.0053  Score=60.60  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      .|...+|+|||+.|.||..+.+.+.+.|+++. ++|+..          +.+.+++..  +.|++++++|.+...+++++
T Consensus        95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~  161 (374)
T PRK11199         95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIAR  161 (374)
T ss_pred             CcccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHH
Confidence            35667899999669999999999999999866 777642          135566665  78999999999999999988


Q ss_pred             HHHcCCcEEEEecCC
Q 020101          119 AMEAELDLVVCITEG  133 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G  133 (331)
                      .....-.. +++..|
T Consensus       162 l~~l~~~~-iv~Dv~  175 (374)
T PRK11199        162 LPPLPEDC-ILVDLT  175 (374)
T ss_pred             HhCCCCCc-EEEECC
Confidence            76643344 434443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.07  E-value=0.0013  Score=57.08  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc-------cCHHHhhhcCCCCEEEEecC-----hhhH
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NTVAEAKAETKANASAIYVP-----PPFA  112 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y-------~sl~dl~~~~~iDlaii~vp-----~~~~  112 (331)
                      |+|+|+||..|+.+++.|.+.|+++++.+-....-++..++.+.       .++.+...  ++|.++.+.+     .+.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~   78 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA   78 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence            67899999999999999999999988655322100111222222       23555555  7999999987     4556


Q ss_pred             HHHHHHHHHcCCcEEEEecC
Q 020101          113 AAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ..+++.|.+.|++.+|++++
T Consensus        79 ~~~~~a~~~~~~~~~v~~s~   98 (183)
T PF13460_consen   79 KNIIEAAKKAGVKRVVYLSS   98 (183)
T ss_dssp             HHHHHHHHHTTSSEEEEEEE
T ss_pred             ccccccccccccccceeeec
Confidence            77778888899988887664

...

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.05  E-value=0.0033  Score=64.23  Aligned_cols=115  Identities=13%  Similarity=0.025  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--e-----cCcc---cccCHHHhhhc-CCCCEEEEecChhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--H-----LGLP---VFNTVAEAKAE-TKANASAIYVPPPF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i-----~G~p---~y~sl~dl~~~-~~iDlaii~vp~~~  111 (331)
                      .+|.+||. |.||+...++|.+.||++. +.|.....-+  .     .|..   .+.+++|+.+. ..+|++++++|...
T Consensus         7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~   84 (493)
T PLN02350          7 SRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA   84 (493)
T ss_pred             CCEEEEee-HHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence            35889999 9999999999999999976 6677642111  1     1433   67789998862 23999999999877


Q ss_pred             HHHHH-HHHHHc-CCcEEEE-ecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          112 AAAAI-LEAMEA-ELDLVVC-ITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       112 ~~~~v-~~~~~~-Gi~~ivi-~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      +.+.+ +.+... ....+|| +++. ..++.+++.+.+ ++.|+++++-.-.|
T Consensus        85 aV~~Vi~gl~~~l~~G~iiID~sT~-~~~~t~~~~~~l-~~~Gi~fldapVSG  135 (493)
T PLN02350         85 PVDQTIKALSEYMEPGDCIIDGGNE-WYENTERRIKEA-AEKGLLYLGMGVSG  135 (493)
T ss_pred             HHHHHHHHHHhhcCCCCEEEECCCC-CHHHHHHHHHHH-HHcCCeEEeCCCcC
Confidence            65544 444433 1223343 3332 345555666666 67899988755444

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.04  E-value=0.004  Score=59.47  Aligned_cols=111  Identities=21%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCce---ecCc--ccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~---i~G~--p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ..+|+|||+ |.+|..+.+.+.+.|+  +++ .+|++....+   -.|.  ....+.++..+  +.|++|+++|+....+
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~-~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~   81 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIV-GADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGA   81 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEE-EEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHH
Confidence            356899998 9999999999988875  554 7776541001   1232  23456666665  7899999999998888


Q ss_pred             HHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101          115 AILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       115 ~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      ++++.... .-+.+++-..+...+-.+++.+..  ..++++++-.
T Consensus        82 v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~--~~~~~~v~~h  124 (307)
T PRK07502         82 VAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL--PEGVHFIPGH  124 (307)
T ss_pred             HHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC--CCCCeEEeCC
Confidence            87776542 233344333344333333333322  3456777643

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.029  Score=57.71  Aligned_cols=209  Identities=13%  Similarity=0.136  Sum_probs=127.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC--CCceecCcccccC--HHHhhhcCCCCEEEEecCh---hh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GGTEHLGLPVFNT--VAEAKAETKANASAIYVPP---PF  111 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~--~g~~i~G~p~y~s--l~dl~~~~~iDlaii~vp~---~~  111 (331)
                      +...++.|+|| |..|..+++.++.. .|..++.+|+..  .|.++.|+|+|.+  +.++.++..+|.++++.|.   +.
T Consensus       114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~  192 (588)
T COG1086         114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEE  192 (588)
T ss_pred             cCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHH
Confidence            45577889999 88999999988875 588998888654  4678999999986  5555666789999998886   45


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccCCCCCCCCCCEEEEe-cC
Q 020101          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVS-RS  189 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valis-QS  189 (331)
                      ..++++.|.+.|++.-.+  +.+.+  ..+..... |+-.+. ++|=.      |-..+....  ...-.|..=+|+ --
T Consensus       193 ~~~i~~~l~~~~~~v~~l--P~~~~--l~~~~~~l-reI~ieDLLgR~------pV~~d~~~i--~~~~~gK~vLVTGag  259 (588)
T COG1086         193 RRRILLRLARTGIAVRIL--PQLTD--LKDLNGQL-REIEIEDLLGRP------PVALDTELI--GAMLTGKTVLVTGGG  259 (588)
T ss_pred             HHHHHHHHHhcCCcEEec--CcHHH--HHHhcccc-ccCCHHHHhCCC------CCCCCHHHH--HhHcCCCEEEEeCCC
Confidence            667889999999776443  33321  11000000 111111 22211      000111100  012345555555 45


Q ss_pred             hHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEE
Q 020101          190 GTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAF  269 (331)
Q Consensus       190 G~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~  269 (331)
                      |++++++.....+.  +..+.+=.+..   ....-++-..|.+.-...-+..|+=.    .+|.++..++.+..||=+++
T Consensus       260 GSiGsel~~qil~~--~p~~i~l~~~~---E~~~~~i~~el~~~~~~~~~~~~igd----VrD~~~~~~~~~~~kvd~Vf  330 (588)
T COG1086         260 GSIGSELCRQILKF--NPKEIILFSRD---EYKLYLIDMELREKFPELKLRFYIGD----VRDRDRVERAMEGHKVDIVF  330 (588)
T ss_pred             CcHHHHHHHHHHhc--CCCEEEEecCc---hHHHHHHHHHHHhhCCCcceEEEecc----cccHHHHHHHHhcCCCceEE
Confidence            67889998877656  66776666654   22333444455553123334455554    67878888888877888888


Q ss_pred             Ee
Q 020101          270 IA  271 (331)
Q Consensus       270 k~  271 (331)
                      .+
T Consensus       331 HA  332 (588)
T COG1086         331 HA  332 (588)
T ss_pred             Eh
Confidence            63

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=96.92  E-value=0.017  Score=57.46  Aligned_cols=124  Identities=16%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI  257 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~  257 (331)
                      ..|+|++|+-.++++...++.....|....-++-+|..+ ..-.+.+.++-+.+||++++|++.+-+. .....-++.+.
T Consensus       255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii  333 (392)
T PRK14046        255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV  333 (392)
T ss_pred             cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence            569999999999999999999999988877788887654 3566788999999999999999865421 11112233333


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  324 (331)
Q Consensus       258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~  324 (331)
                      ++.+   .+|||++.-.|.                    ..+.....|+++|+. +...++|.++++...
T Consensus       334 ~a~~~~~~~kPvvv~l~G~--------------------~~e~~~~iL~~~Gip-vf~~~~~~~a~~~~v  382 (392)
T PRK14046        334 QAAREVGIDVPLVVRLAGT--------------------NVEEGRKILAESGLP-IITADTLAEAAEKAV  382 (392)
T ss_pred             HHHHhcCCCCcEEEEcCCC--------------------CHHHHHHHHHHcCCC-eeecCCHHHHHHHHH
Confidence            4333   478996654441                    234557778999963 244445555555433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.91  E-value=0.0054  Score=62.31  Aligned_cols=113  Identities=13%  Similarity=0.084  Sum_probs=72.6

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--c-----CcccccCHHHhhhc-CCCCEEEEecCh-hhHHH
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAAA  114 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~-----G~p~y~sl~dl~~~-~~iDlaii~vp~-~~~~~  114 (331)
                      |.+||. |+||..++++|.+.|++++ ..|++... +..  .     ++..+.+++++.+. .++|++++++|+ +.+.+
T Consensus         2 IG~IGL-G~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         2 IGVIGL-AVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             EEEEee-HHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            678999 9999999999999999876 66665421 111  1     25567788887643 258999999998 56666


Q ss_pred             HHHHHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          115 AILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       115 ~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      +++.+... .- +.++-.++....+.. +..+.+ ++.|+.+++-.-.|
T Consensus        80 Vi~~l~~~L~~g~iIID~gns~~~~t~-~~~~~l-~~~gi~fvdapVsG  126 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGNSHYPDTE-RRYKEL-KAKGILFVGSGVSG  126 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCCcCHHHHH-HHHHHH-HhcCCEEEcCCCCC
Confidence            76666543 12 333334443433333 334444 57788888655444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.90  E-value=0.0031  Score=61.42  Aligned_cols=92  Identities=11%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCCceec--Cc-cccc--CHHHhhhcCCCCEEEEecChhh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEHL--GL-PVFN--TVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g~~i~--G~-p~y~--sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++.++|+|+||||..|+.+++.|.+.+   .++++..+.+..|+.+.  |. -.+.  +..++ +  ++|++++++|+..
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~   78 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAV   78 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHH
Confidence            455889999999999999999999643   34555566655554331  21 0111  12232 3  7999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCC
Q 020101          112 AAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      ..+.+.++.++|++. |-.++.|.
T Consensus        79 s~~~v~~~~~~G~~V-IDlS~~fR  101 (336)
T PRK05671         79 SRSFAEKARAAGCSV-IDLSGALP  101 (336)
T ss_pred             HHHHHHHHHHCCCeE-EECchhhc
Confidence            999999999999875 66676664

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.89  E-value=0.0078  Score=58.83  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCe---EEEEeCCCCCCcee--cC--ccccc-CHHHhhhcCCCCEEEEecChh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH--LG--LPVFN-TVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~---iv~~VnP~~~g~~i--~G--~p~y~-sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +++++|+|+||||-.|+.+++.|.+ ..|+   +...-..+..|+.+  .|  +.+.+ +.+++ .  ++|+++.++|.+
T Consensus         3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~   79 (347)
T PRK06728          3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGE   79 (347)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChH
Confidence            4568999999999999999999986 4665   55445555555543  12  22222 23333 3  699999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChh----------HHHHHHHHHhccCCcEEEccCCCC
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQH----------DMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~----------~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ...+.+.++.++|.+. |-.++-|..+          ..+.+.    ...+ .|-.|||.-
T Consensus        80 ~s~~~~~~~~~~G~~V-ID~Ss~fR~~~~vplvvPEvN~e~i~----~~~~-iIanPnC~t  134 (347)
T PRK06728         80 VSRQFVNQAVSSGAIV-IDNTSEYRMAHDVPLVVPEVNAHTLK----EHKG-IIAVPNCSA  134 (347)
T ss_pred             HHHHHHHHHHHCCCEE-EECchhhcCCCCCCeEeCCcCHHHHh----ccCC-EEECCCCHH
Confidence            9999999999999764 5456555322          122232    2234 588899954

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.89  E-value=0.0056  Score=59.76  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC--------CeEE-EEeCC-------------CCCCce-ecC------cccccCHHHh
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG--------TKMV-GGVTP-------------KKGGTE-HLG------LPVFNTVAEA   94 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g--------~~iv-~~VnP-------------~~~g~~-i~G------~p~y~sl~dl   94 (331)
                      +|+|+|+ |++|+.+...+.+.+        .++. +..++             .+.... ..|      +....+++++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            4788999 999999999888766        5532 23311             000000 112      3345678887


Q ss_pred             hhcCCCCEEEEecChhhHHHHHHHHHHcC--CcEEEEecCCCChh
Q 020101           95 KAETKANASAIYVPPPFAAAAILEAMEAE--LDLVVCITEGIPQH  137 (331)
Q Consensus        95 ~~~~~iDlaii~vp~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~  137 (331)
                      .+  +.|++++++|.+...++++++...-  -+.+|..+-|+..+
T Consensus        80 l~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        80 AK--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             Hh--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            76  7899999999999999988876431  23466688899655

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.87  E-value=0.0073  Score=58.75  Aligned_cols=94  Identities=19%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------C---ceec-C------cccccCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------G---TEHL-G------LPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g---~~i~-G------~p~y~sl~dl~~~~~iDlai  104 (331)
                      +..+|+|+|+ |.+|..+...|.+.|...++..||...      +   +... +      +....++++..+  +.|+++
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDlVi   82 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADVVV   82 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCEEE
Confidence            4567999999 999999999888887433334333211      0   0001 1      233456766655  689999


Q ss_pred             EecChhhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 020101          105 IYVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQH  137 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~  137 (331)
                      +++|+....+++++.... +- ..++.++-|+...
T Consensus        83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~  117 (341)
T PRK12439         83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG  117 (341)
T ss_pred             EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence            999999999998888653 22 2466788899653

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.86  E-value=0.0086  Score=57.98  Aligned_cols=116  Identities=16%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEE-eCCCCCCce---ecC--cccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGG-VTPKKGGTE---HLG--LPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~-VnP~~~g~~---i~G--~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      .+|+|+||+|..|+..++.|.+..|  ..+.. -.++..|++   ..|  +++-.+..+.....++|+++.+.+.+...+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~   81 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE   81 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence            5789999999999999999998543  42322 333333443   111  233333334333347999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChh-H---------HHHHHHHHhccCCcEEEccCCCC
Q 020101          115 AILEAMEAELDLVVCITEGIPQH-D---------MVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~~e~-~---------~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ...++.++|.-. +=-++-|.-+ |         ...|.+.  +++|..|.+|||.-
T Consensus        82 ~~p~~~~~G~~V-IdnsSa~Rm~~DVPLVVPeVN~~~l~~~--~~rg~IianpNCst  135 (334)
T COG0136          82 VEPKAAEAGCVV-IDNSSAFRMDPDVPLVVPEVNPEHLIDY--QKRGFIIANPNCST  135 (334)
T ss_pred             HHHHHHHcCCEE-EeCCcccccCCCCCEecCCcCHHHHHhh--hhCCCEEECCChHH
Confidence            999999999432 2223333211 1         2335544  33455688999954

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.85  E-value=0.0076  Score=61.31  Aligned_cols=114  Identities=11%  Similarity=0.043  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-e-----cC--cccccCHHHhhhc-CCCCEEEEecCh-hhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H-----LG--LPVFNTVAEAKAE-TKANASAIYVPP-PFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i-----~G--~p~y~sl~dl~~~-~~iDlaii~vp~-~~~  112 (331)
                      +|.|||. |+||....++|.+.|+++. ..|.+... ++ .     .|  +..+.+++|+.+. .++|++++++|+ +.+
T Consensus         3 ~IgvIGL-G~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          3 DIGLIGL-AVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             EEEEEeE-hHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            5889999 9999999999999999866 66665421 01 1     14  3357789888753 248988888655 556


Q ss_pred             HHHHHHHHHcC-C-cEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          113 AAAILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       113 ~~~v~~~~~~G-i-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      .++++++...- . +.++..+++.. ++..++.+.+ +++|+++++-.-.|
T Consensus        81 ~~vi~~l~~~L~~g~iIID~gn~~~-~dt~~r~~~l-~~~Gi~fldapVSG  129 (470)
T PTZ00142         81 DETIDNLLPLLEKGDIIIDGGNEWY-LNTERRIKRC-EEKGILYLGMGVSG  129 (470)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHH-HHcCCeEEcCCCCC
Confidence            66666655421 1 33344444443 3434444445 57899988755544

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=96.84  E-value=0.0027  Score=61.70  Aligned_cols=85  Identities=18%  Similarity=0.112  Sum_probs=64.5

Q ss_pred             EEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC----------ce------------ecCcccccCHHHhhhcCCCC
Q 020101           45 VICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----------TE------------HLGLPVFNTVAEAKAETKAN  101 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g----------~~------------i~G~p~y~sl~dl~~~~~iD  101 (331)
                      |+|+|+ |++|+.+++.+.+. +.++++..|+....          +.            -.|++++.+++++++  ++|
T Consensus         1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vD   77 (333)
T TIGR01546         1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVD   77 (333)
T ss_pred             CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCC
Confidence            478999 99999999987654 68888665543310          00            124556778999986  799


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       102 laii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +++.++|...+....+...+.|.+.+++-.+
T Consensus        78 iVve~Tp~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        78 IVVDATPGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             EEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence            9999999999999999999999999665333

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=96.84  E-value=0.0076  Score=52.89  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CCceecCcccccCHHHhhhc-CCCCEEEEecC-hhhHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEHLGLPVFNTVAEAKAE-TKANASAIYVP-PPFAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g~~i~G~p~y~sl~dl~~~-~~iDlaii~vp-~~~~~~~v~~~  119 (331)
                      +++|+|+ |..|+.+++.|++.|+++++.+|.+.  .++.+.|+|++.+.+++.+. .+.+.++++++ +....++++.+
T Consensus         1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l   79 (201)
T TIGR03570         1 KLVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL   79 (201)
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence            3678999 99999999999888999998876543  34678999999887776542 23578888884 45556677777


Q ss_pred             HHcCCcEE
Q 020101          120 MEAELDLV  127 (331)
Q Consensus       120 ~~~Gi~~i  127 (331)
                      .+.+++..
T Consensus        80 ~~~g~~~~   87 (201)
T TIGR03570        80 KAKGYRFA   87 (201)
T ss_pred             HhCCCcce
Confidence            77776553

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.82  E-value=0.0065  Score=60.19  Aligned_cols=91  Identities=16%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------C--cccccCHHHh-hhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G--LPVFNTVAEA-KAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G--~p~y~sl~dl-~~~~~iDlaii~vp  108 (331)
                      ++.++|+|+||||..|+.+++.|.++ .+++.........|+.+.       +  .+.+.+++.. .+  ++|+++.++|
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp  113 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLP  113 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCC
Confidence            45678999999999999999999987 678775554433333321       1  1112222221 12  6999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .+...+.+..+ +.|.+. |-.++-|
T Consensus       114 ~~~s~~i~~~~-~~g~~V-IDlSs~f  137 (381)
T PLN02968        114 HGTTQEIIKAL-PKDLKI-VDLSADF  137 (381)
T ss_pred             HHHHHHHHHHH-hCCCEE-EEcCchh
Confidence            99999999986 778664 5566655

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0073  Score=56.92  Aligned_cols=112  Identities=17%  Similarity=0.275  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCCce----ecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGTE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g~~----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      .+|.+||+ |+||+.++..+.+.|    .+|+ ..||+.....    .+|+....+..++.+  +.|++++++.|....+
T Consensus         2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~   77 (266)
T COG0345           2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEII-VTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEE   77 (266)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEE-EeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHH
Confidence            46889999 999999999999887    3455 8888863111    345555566667666  6899999999999999


Q ss_pred             HHHHHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCC-cEEEccCCCCcc
Q 020101          115 AILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVGPNCPGVI  163 (331)
Q Consensus       115 ~v~~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g-i~viGPnc~Gi~  163 (331)
                      ++.++.. ..=+.+|=+..|.+-+..+++.    -... +|++ ||..-.+
T Consensus        78 vl~~l~~~~~~~lvISiaAGv~~~~l~~~l----~~~~vvR~M-PNt~a~v  123 (266)
T COG0345          78 VLSKLKPLTKDKLVISIAAGVSIETLERLL----GGLRVVRVM-PNTPALV  123 (266)
T ss_pred             HHHHhhcccCCCEEEEEeCCCCHHHHHHHc----CCCceEEeC-CChHHHH
Confidence            9999874 2234556688999877665432    2233 3444 8864433

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.76  E-value=0.0051  Score=55.95  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=60.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e-------e---cCcc--c-ccCHHHhhhcCCCCEEEEecCh
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-------H---LGLP--V-FNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-------i---~G~p--~-y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +|.|||++|+||+.+.+.|.+.|++++ .++++...- .       .   .|+.  + ..+..+..+  +.|++++++|+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp~   78 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVPW   78 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECCH
Confidence            688998559999999999999898865 445443100 0       0   1211  1 124555555  68999999999


Q ss_pred             hhHHHHHHHHHHc-CCcEEEEecCCCCh
Q 020101          110 PFAAAAILEAMEA-ELDLVVCITEGIPQ  136 (331)
Q Consensus       110 ~~~~~~v~~~~~~-Gi~~ivi~t~G~~e  136 (331)
                      ....++++++... .-+.++-.+.|++.
T Consensus        79 ~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        79 DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            9999998876532 22555656777754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.76  E-value=0.0072  Score=59.52  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCCCcHHHHH-HHHcCCe---EEEEeCCCCCCcee---cC--ccccc--CHHHhhhcCCCCEEEEecChhh
Q 020101           43 TRVICQGITGKNGTFHTEQ-AIEYGTK---MVGGVTPKKGGTEH---LG--LPVFN--TVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~-l~~~g~~---iv~~VnP~~~g~~i---~G--~p~y~--sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++|+|+||||-.|+.+++. +.+..+.   ++. +.-...|+..   .|  ..++.  +.+++ .  ++|+++.++|.+.
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~   77 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDY   77 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHH
Confidence            5789999999999999984 4445665   664 4333322322   22  12332  12333 3  6999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEE-ecCCCC----------hhHHHHHHHHHhccCCc-EEEccCCCC
Q 020101          112 AAAAILEAMEAELDLVVC-ITEGIP----------QHDMVRVKAALNNQSKT-RLVGPNCPG  161 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi-~t~G~~----------e~~~~~l~~~a~~~~gi-~viGPnc~G  161 (331)
                      +.+...++.++|++.+|+ .++-|.          |-..+.+.. . .+.|+ .|..|||.-
T Consensus        78 s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~-~~~g~~iIanPnC~t  137 (369)
T PRK06598         78 TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-A-LANGVKTFVGGNCTV  137 (369)
T ss_pred             HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-h-hhcCCCEEEcCChHH
Confidence            999999999999874333 444332          211233433 1 24665 577999964

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.75  E-value=0.0067  Score=58.50  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=60.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      .++|+|+||||-.|..+++.|.++. +++++...-..  ...      ...++...  ++|+++.++|.....+.+.++.
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~   71 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID   71 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence            3679999999999999999998874 57774433222  221      22233333  6899999999999999999999


Q ss_pred             HcCCcEEEEecCCC
Q 020101          121 EAELDLVVCITEGI  134 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~  134 (331)
                      +.|++. |-.+.-|
T Consensus        72 ~~g~~V-IDlSadf   84 (313)
T PRK11863         72 NPATRV-IDASTAH   84 (313)
T ss_pred             hCCCEE-EECChhh
Confidence            999874 6567655

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.73  E-value=0.0058  Score=57.64  Aligned_cols=91  Identities=12%  Similarity=0.102  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecC-cccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLG-LPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G-~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +|+|||. |.||..+...|.+.|++++ .+|++... +.  -.| +....+..+...  +.|++++++|++...+++++.
T Consensus         2 ~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~~l   77 (279)
T PRK07417          2 KIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSEQL   77 (279)
T ss_pred             eEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHHHH
Confidence            5889998 9999999999999898866 77765410 01  122 222322223344  689999999999999998887


Q ss_pred             HHc-CCcEEEEecCCCChhH
Q 020101          120 MEA-ELDLVVCITEGIPQHD  138 (331)
Q Consensus       120 ~~~-Gi~~ivi~t~G~~e~~  138 (331)
                      ... .-+.+|.-+.+...+.
T Consensus        78 ~~~l~~~~ii~d~~Svk~~~   97 (279)
T PRK07417         78 IPALPPEAIVTDVGSVKAPI   97 (279)
T ss_pred             HHhCCCCcEEEeCcchHHHH
Confidence            764 3334443333444333

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.73  E-value=0.0061  Score=59.55  Aligned_cols=89  Identities=11%  Similarity=0.024  Sum_probs=62.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEE-eCCCCCCceec---Cccc------------c--cCHHHhhhcCCCCE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG-VTPKKGGTEHL---GLPV------------F--NTVAEAKAETKANA  102 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~-VnP~~~g~~i~---G~p~------------y--~sl~dl~~~~~iDl  102 (331)
                      .++|+|+|+||.+|+.+++.|.++ .+++++. .++...|+.+.   +...            +  .+.+++ .  ++|+
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv   79 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI   79 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence            478999999999999999998876 4577755 45544443322   1111            1  123333 2  6899


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       103 aii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      ++.++|.....+.++++.++|++. |..+.-|
T Consensus        80 Vf~a~p~~~s~~~~~~~~~~G~~v-IDls~~f  110 (349)
T PRK08664         80 VFSALPSDVAGEVEEEFAKAGKPV-FSNASAH  110 (349)
T ss_pred             EEEeCChhHHHHHHHHHHHCCCEE-EECCchh
Confidence            999999999999999999999986 4456544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.73  E-value=0.0097  Score=57.20  Aligned_cols=90  Identities=12%  Similarity=0.102  Sum_probs=62.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC----------Cce-ec------CcccccCHHHhhhcCCCCEEEEe
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------GTE-HL------GLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~----------g~~-i~------G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      +|+|+|+ |.+|..+...|.+.|.++. .++++..          +.. ..      +++.+.++++...+ +.|+++++
T Consensus         2 kI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliiia   78 (326)
T PRK14620          2 KISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIILA   78 (326)
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEEE
Confidence            5889999 9999999999998888765 5554320          001 11      23344566665421 68999999


Q ss_pred             cChhhHHHHHHHHHH-c-C-CcEEEEecCCCCh
Q 020101          107 VPPPFAAAAILEAME-A-E-LDLVVCITEGIPQ  136 (331)
Q Consensus       107 vp~~~~~~~v~~~~~-~-G-i~~ivi~t~G~~e  136 (331)
                      +|+....++++++.. . + -..+++++.|+..
T Consensus        79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999999999998875 3 2 2346778889855

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.71  E-value=0.016  Score=57.16  Aligned_cols=70  Identities=19%  Similarity=0.119  Sum_probs=56.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +.+|.|||.+|.||....+.|++. +++++ ++|+..   +     ...++++...  +.|++++|+|.+...+++++..
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d---~-----~~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~   72 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD---P-----GSLDPATLLQ--RADVLIFSAPIRHTAALIEEYV   72 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc---c-----ccCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHh
Confidence            457899999999999999999874 78876 788753   1     1234566665  7999999999999999999988


Q ss_pred             Hc
Q 020101          121 EA  122 (331)
Q Consensus       121 ~~  122 (331)
                      ..
T Consensus        73 ~~   74 (370)
T PRK08818         73 AL   74 (370)
T ss_pred             hh
Confidence            74

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.71  E-value=0.0036  Score=56.78  Aligned_cols=84  Identities=19%  Similarity=0.202  Sum_probs=60.3

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----ecCccc----ccC---HHHhhhcCCCCEEEEecC----
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPV----FNT---VAEAKAETKANASAIYVP----  108 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i~G~p~----y~s---l~dl~~~~~iDlaii~vp----  108 (331)
                      |+|+|++|+.|+.+++.|.+.++++.+.+.+... +.     -.|..+    |.+   |.+...  ++|.++++++    
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~-~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~~   77 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS-DRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSHP   77 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH-HHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSCC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch-hhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcchh
Confidence            5789999999999999999989998877775420 11     123321    333   444444  8999999999    


Q ss_pred             --hhhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 --PPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 --~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        .+....+++.|.+.||+.++ +++
T Consensus        78 ~~~~~~~~li~Aa~~agVk~~v-~ss  102 (233)
T PF05368_consen   78 SELEQQKNLIDAAKAAGVKHFV-PSS  102 (233)
T ss_dssp             CHHHHHHHHHHHHHHHT-SEEE-ESE
T ss_pred             hhhhhhhhHHHhhhccccceEE-EEE
Confidence              45678899999999999976 443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.71  E-value=0.017  Score=56.40  Aligned_cols=92  Identities=10%  Similarity=0.051  Sum_probs=63.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCcee--cCc-ccccCHH-HhhhcCCCCEEEEecChhhH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGL-PVFNTVA-EAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i--~G~-p~y~sl~-dl~~~~~iDlaii~vp~~~~  112 (331)
                      .+..+|+|+||||..|+.+++.|.+.++   ++......+..|+.+  .|. ..+..++ +...  ++|+++.++|....
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~--~~D~vf~a~p~~~s   82 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFD--GVDIALFSAGGSIS   82 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHc--CCCEEEECCCcHHH
Confidence            4567899999999999999999988544   454343443334432  221 1222222 2223  69999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCC
Q 020101          113 AAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .+.+.++.+.|++. |-.++-|
T Consensus        83 ~~~~~~~~~~g~~V-IDlS~~f  103 (344)
T PLN02383         83 KKFGPIAVDKGAVV-VDNSSAF  103 (344)
T ss_pred             HHHHHHHHhCCCEE-EECCchh
Confidence            99999999999874 5566544

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.67  E-value=0.0042  Score=56.05  Aligned_cols=51  Identities=22%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +|+|||++|+||+...+.+.+.|+.+.                       + .  +.|++++++|.....+++++..
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-----------------------~-~--~~DlVilavPv~~~~~~i~~~~   52 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY-----------------------I-K--KADHAFLSVPIDAALNYIESYD   52 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE-----------------------E-C--CCCEEEEeCCHHHHHHHHHHhC
Confidence            688999999999999999999998754                       1 2  6899999999999999998864

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.67  E-value=0.011  Score=57.79  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeE-EEEeCCCCCCce---ecCccc----ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTE---HLGLPV----FNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~i-v~~VnP~~~g~~---i~G~p~----y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +|.|||. |.||..+.+.+.+.|+++ ++..||+.  ..   -.+..+    ..+++++..  +.|++++++|++...++
T Consensus         2 ~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~v   76 (359)
T PRK06545          2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSA--AQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAAL   76 (359)
T ss_pred             eEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCH--HHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHH
Confidence            4788999 999999999999988763 33566654  21   112222    245666665  79999999999999999


Q ss_pred             HHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101          116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       116 v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP  157 (331)
                      +++....  .-..++.-..+...+..+++.+.  ...+.+++|-
T Consensus        77 l~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~--~~~~~~~ig~  118 (359)
T PRK06545         77 LAELADLELKPGVIVTDVGSVKGAILAEAEAL--LGDLIRFVGG  118 (359)
T ss_pred             HHHHhhcCCCCCcEEEeCccccHHHHHHHHHh--cCCCCeEEee
Confidence            9888752  33343433345544444444332  1345677763

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.66  E-value=0.0026  Score=62.51  Aligned_cols=104  Identities=14%  Similarity=0.219  Sum_probs=64.8

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcC-C-eEE-EEeCCCCC--------Ccee----cCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           45 VICQGITGKNGTFHTEQAIEYG-T-KMV-GGVTPKKG--------GTEH----LGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g-~-~iv-~~VnP~~~--------g~~i----~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |+|+|+ |.+|+.+++.|.+.+ + +++ +.-|+...        +..+    ..+.-..+++++..  +.|++|.++|+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence            578999 999999999998864 5 543 33333320        0001    11111224666666  68999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      .....+++.|++.|++. +-  +.+-.+...++.+.+ +++|+.++
T Consensus        78 ~~~~~v~~~~i~~g~~y-vD--~~~~~~~~~~l~~~a-~~~g~~~l  119 (386)
T PF03435_consen   78 FFGEPVARACIEAGVHY-VD--TSYVTEEMLALDEEA-KEAGVTAL  119 (386)
T ss_dssp             GGHHHHHHHHHHHT-EE-EE--SS-HHHHHHHCHHHH-HHTTSEEE
T ss_pred             chhHHHHHHHHHhCCCe-ec--cchhHHHHHHHHHHH-HhhCCEEE
Confidence            99999999999999997 43  443234445555666 67777755

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=96.65  E-value=0.0083  Score=51.70  Aligned_cols=86  Identities=14%  Similarity=0.069  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC--------ceecCc-------------------ccc--cCHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG--------TEHLGL-------------------PVF--NTVA   92 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g--------~~i~G~-------------------p~y--~sl~   92 (331)
                      ++|+|+|+ |+||+.+++.+.+ .++++++..++....        +...|.                   +++  .+.+
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~   79 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA   79 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence            47899999 9999999998775 478888776652100        111221                   111  2344


Q ss_pred             Hhh-hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           93 EAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        93 dl~-~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++ .+.++|+++.+|..-...+.++.-++.|+|.+++
T Consensus        80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii  117 (149)
T smart00846       80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII  117 (149)
T ss_pred             HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence            443 2246788888876656666666777788888665

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.65  E-value=0.018  Score=55.28  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCc-ccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ...+|.|+|. |++|+.+.+.+..+|++++ .+||..  .. .|. ..|.+++++..  +.|++++++|...
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~--~~-~~~~~~~~~l~ell~--~aDiv~~~lp~t~  185 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGMNIY-AYTRSY--VN-DGISSIYMEPEDIMK--KSDFVLISLPLTD  185 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCC--cc-cCcccccCCHHHHHh--hCCEEEECCCCCc
Confidence            4566889999 9999999999888999987 788764  22 233 34789999987  7899999999643

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.64  E-value=0.0094  Score=56.01  Aligned_cols=89  Identities=18%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCc---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGT---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      +|+|||. |+||..+.+.|.+.|+  +++ ++|++....   ...|.. .+.+.+++.   +.|++|+++|++...++++
T Consensus         2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aD~Vilavp~~~~~~~~~   76 (275)
T PRK08507          2 KIGIIGL-GLMGGSLGLALKEKGLISKVY-GYDHNELHLKKALELGLVDEIVSFEELK---KCDVIFLAIPVDAIIEILP   76 (275)
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCCEEE-EEcCCHHHHHHHHHCCCCcccCCHHHHh---cCCEEEEeCcHHHHHHHHH
Confidence            5889998 9999999999998886  444 677754110   123432 344677754   4899999999999999998


Q ss_pred             HHHHcCCcEEEEecCCCChhH
Q 020101          118 EAMEAELDLVVCITEGIPQHD  138 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~  138 (331)
                      +.....-..+| +..|.....
T Consensus        77 ~l~~l~~~~iv-~d~gs~k~~   96 (275)
T PRK08507         77 KLLDIKENTTI-IDLGSTKAK   96 (275)
T ss_pred             HHhccCCCCEE-EECccchHH
Confidence            87652223333 455554433

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.63  E-value=0.0041  Score=59.02  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------------------ecC-cccccCHHHh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG-LPVFNTVAEA   94 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------------------i~G-~p~y~sl~dl   94 (331)
                      ..+|+|||+ |.||..++..+...|++++ .+|++...-+                          ..+ +.+..+.++ 
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-   80 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE-   80 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH-
Confidence            456899999 9999999999999999876 7776541100                          001 122234544 


Q ss_pred             hhcCCCCEEEEecC--hhhHHHHHHHHHHc-CCcEEEE-ecCCCChhHHH
Q 020101           95 KAETKANASAIYVP--PPFAAAAILEAMEA-ELDLVVC-ITEGIPQHDMV  140 (331)
Q Consensus        95 ~~~~~iDlaii~vp--~~~~~~~v~~~~~~-Gi~~ivi-~t~G~~e~~~~  140 (331)
                      .+  +.|+++.++|  ++.-..++.++.+. .-+.+++ -+++++.++..
T Consensus        81 ~~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~  128 (295)
T PLN02545         81 LR--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLA  128 (295)
T ss_pred             hC--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence            34  6899999999  66666666665543 2233443 46677655543

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.61  E-value=0.0097  Score=57.75  Aligned_cols=109  Identities=15%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH--------cCCeEEEEeCCCCC-----Ccee---------cCcccc--c--CHHHhhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKKG-----GTEH---------LGLPVF--N--TVAEAKA   96 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~--------~g~~iv~~VnP~~~-----g~~i---------~G~p~y--~--sl~dl~~   96 (331)
                      ++|+|+|+ |+.|+.+++.+.+        .++++++..|.+..     |-.+         ..+..|  +  +++++.+
T Consensus         1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            37899999 9999999988766        24677765443320     0000         011122  2  5677654


Q ss_pred             cCCCCEEEEecChh----hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101           97 ETKANASAIYVPPP----FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        97 ~~~iDlaii~vp~~----~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                       .++|++|.++|..    .....+++++++|++.+. .+-|.--....+|.+.| +++|.++.
T Consensus        80 -~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT-aNKgalA~~~~eL~~lA-~~~g~~~~  139 (326)
T PRK06392         80 -IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT-ANKSGLANHWHDIMDSA-SKNRRIIR  139 (326)
T ss_pred             -CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc-CCHHHHHhhHHHHHHHH-HHcCCeEE
Confidence             3799999999742    256778999999999732 22121113345677777 77876655

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.60  E-value=0.0081  Score=58.34  Aligned_cols=89  Identities=15%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCcee--cCcc-cccCHHHh-hhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGLP-VFNTVAEA-KAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i--~G~p-~y~sl~dl-~~~~~iDlaii~vp~~~~~~~  115 (331)
                      ++|+|+||||..|+.+++.|.+.++   ++.+....+..|+.+  .|.. .+.++++. ..  ++|+++.++|.....+.
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~--~vDvVf~A~g~g~s~~~   79 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFS--GVDIALFSAGGSVSKKY   79 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHc--CCCEEEECCChHHHHHH
Confidence            5799999999999999999998543   566555554444443  2211 22222221 13  79999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCC
Q 020101          116 ILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +..+.++|++ +|-.++.|
T Consensus        80 ~~~~~~~G~~-VIDlS~~~   97 (334)
T PRK14874         80 APKAAAAGAV-VIDNSSAF   97 (334)
T ss_pred             HHHHHhCCCE-EEECCchh
Confidence            9999999983 34345544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.59  E-value=0.015  Score=62.20  Aligned_cols=110  Identities=19%  Similarity=0.178  Sum_probs=71.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCce---ecCcc--cccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE---HLGLP--VFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~---i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +..+|+|||+ |+||..+.+.+.+.|+  +++ .+|++....+   ..|..  ...++++..+  +.|++++++|++...
T Consensus         2 ~~~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~   77 (735)
T PRK14806          2 LFGRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAME   77 (735)
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHH
Confidence            3456889998 9999999999998884  554 6777652111   13432  3345666666  789999999999999


Q ss_pred             HHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          114 AAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       114 ~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ++++++... .-+.+++-..+....-.+++.+.. ....+|++
T Consensus        78 ~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~-~~~~~r~~  119 (735)
T PRK14806         78 KVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF-GELPAGFV  119 (735)
T ss_pred             HHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc-cccCCeEE
Confidence            988887653 223344444555544444454443 23356766

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.56  E-value=0.011  Score=57.46  Aligned_cols=105  Identities=18%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHH-HHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH--H
Q 020101           41 KNTRVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--L  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l-~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v--~  117 (331)
                      +..+|.|||+ |++|+.+.+.+ ..+|.+++ ..||........++....+++++..  +.|++++++|.......+  +
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~  220 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNA  220 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCH
Confidence            3457899999 99999999998 55688877 7787652111123344458999887  789999999976544443  1


Q ss_pred             H---HHHcCCcEEEEecCCCChhHHHHHHHHHhccCCc
Q 020101          118 E---AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT  152 (331)
Q Consensus       118 ~---~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi  152 (331)
                      +   ..+.|. .+|+.+.|... +..+|.+.. ++..+
T Consensus       221 ~~l~~mk~ga-ilIN~sRG~~v-d~~aL~~aL-~~g~i  255 (332)
T PRK08605        221 DLFKHFKKGA-VFVNCARGSLV-DTKALLDAL-DNGLI  255 (332)
T ss_pred             HHHhcCCCCc-EEEECCCCccc-CHHHHHHHH-HhCCe
Confidence            1   223332 44556666533 334455544 44444

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.55  E-value=0.0081  Score=57.21  Aligned_cols=116  Identities=16%  Similarity=0.318  Sum_probs=69.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e--ecCccc--ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~--i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +..+|+|+|+ |++|+.+++.+...|.+++ .+|++.... .  ..|...  +.++++...  +.|+++.++|.......
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~~  225 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTAD  225 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCHH
Confidence            3467899999 9999999999999999866 777654100 0  123332  234566655  78999999987643322


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCCCCcccCC
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPG  166 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc~Gi~~p~  166 (331)
                      ..+..+.+ ..++.+++.-...+.    +.+ ++.|++ +.-|+-.|.+.|.
T Consensus       226 ~l~~~k~~-aliIDlas~Pg~tdf----~~A-k~~G~~a~~~~glPg~~ap~  271 (287)
T TIGR02853       226 VLSKLPKH-AVIIDLASKPGGTDF----EYA-KKRGIKALLAPGLPGIVAPK  271 (287)
T ss_pred             HHhcCCCC-eEEEEeCcCCCCCCH----HHH-HHCCCEEEEeCCCCcccCch
Confidence            22222222 223334432222233    334 788887 4467777777664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.53  E-value=0.0096  Score=58.01  Aligned_cols=93  Identities=18%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH--c-CCeEEEEeCCCCCCceec--C--cccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE--Y-GTKMVGGVTPKKGGTEHL--G--LPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~--~-g~~iv~~VnP~~~g~~i~--G--~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      .+.++|+|+||||-.|+.+++.|.+  + .+++...-..+..|+.+.  |  +++. ++++..- .++|+++.++|...+
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~-~~~Dvvf~a~p~~~s   79 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDW-SQAQLAFFVAGREAS   79 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhc-cCCCEEEECCCHHHH
Confidence            4568899999999999999999998  4 346664444444454431  2  2222 4444320 268999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCC
Q 020101          113 AAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      .+.+.++.++|++. |-.++-|.
T Consensus        80 ~~~~~~~~~~g~~V-IDlS~~fR  101 (336)
T PRK08040         80 AAYAEEATNAGCLV-IDSSGLFA  101 (336)
T ss_pred             HHHHHHHHHCCCEE-EECChHhc
Confidence            99999999999874 65675553

>PLN02858 fructose-bisphosphate aldolase

Probab=96.52  E-value=0.013  Score=66.86  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecC-hhhHHHHHH-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAIL-  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp-~~~~~~~v~-  117 (331)
                      .+|.+||. |+||..+.++|.+.|++++ +.|+.... +.  -.|.....+.+++.+  +.|++++++| ++.+.+++. 
T Consensus       325 ~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl~g  400 (1378)
T PLN02858        325 KRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVLFG  400 (1378)
T ss_pred             CeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHHhc
Confidence            67899999 9999999999999999876 66765410 11  135556778888887  7999999999 555566652 


Q ss_pred             --HHHHc-CCcEEEEecCCCChhHHHHHHHHHhcc--CCcEEE-ccCCCC
Q 020101          118 --EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQ--SKTRLV-GPNCPG  161 (331)
Q Consensus       118 --~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~--~gi~vi-GPnc~G  161 (331)
                        .++.. ....+|+-.+-.+.+..+++.+.+ ++  +|++++ .|=+-|
T Consensus       401 ~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l-~~~g~g~~~lDAPVsGg  449 (1378)
T PLN02858        401 DLGAVSALPAGASIVLSSTVSPGFVIQLERRL-ENEGRDIKLVDAPVSGG  449 (1378)
T ss_pred             hhhHHhcCCCCCEEEECCCCCHHHHHHHHHHH-HhhCCCcEEEEccCCCC
Confidence              23332 122344434444455666676665 45  777755 554433

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.48  E-value=0.013  Score=58.00  Aligned_cols=63  Identities=16%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|.|||. |++|+.+.+.+..+|++++ ..||..  ....+..-|.+++++.+  +.|++++.+|-
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~--~~~~~~~~~~~l~ell~--~aDiV~lh~Pl  177 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPR--QEAEGDGDFVSLERILE--ECDVISLHTPL  177 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccCccccCHHHHHh--hCCEEEEeCcC
Confidence            4566899999 9999999999999999987 778854  22223334678999987  79999999995

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=96.47  E-value=0.0045  Score=62.27  Aligned_cols=116  Identities=16%  Similarity=0.259  Sum_probs=76.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC-----CCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----KGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~-----~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +..+|+|||. |..|+....+|+..|.+++.++-+.     ..+.+   -.|+++ .+++|+..  ..|++++.+|....
T Consensus        35 kgKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLlPDt~q  110 (487)
T PRK05225         35 KGKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLTPDKQH  110 (487)
T ss_pred             CCCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcCChHHH
Confidence            3466888999 9999999999999999877555443     21111   257765 56888876  78999999999864


Q ss_pred             HHHHHHHHH--cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          113 AAAILEAME--AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       113 ~~~v~~~~~--~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      ..+- +-+.  ..-...+.|+.||.-.... + . ..+.-.+-++.|-|+|-..
T Consensus       111 ~~v~-~~i~p~LK~Ga~L~fsHGFni~~~~-i-~-~~~dvdVimvAPKgpG~~v  160 (487)
T PRK05225        111 SDVV-RAVQPLMKQGAALGYSHGFNIVEVG-E-Q-IRKDITVVMVAPKCPGTEV  160 (487)
T ss_pred             HHHH-HHHHhhCCCCCEEEecCCceeeeCc-e-e-CCCCCcEEEECCCCCCchH
Confidence            4433 3333  3345667799999743211 0 1 1134456688899888443

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.44  E-value=0.015  Score=57.91  Aligned_cols=95  Identities=19%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-e--------------------cC-cccccCHHHhhhcCCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H--------------------LG-LPVFNTVAEAKAETKA  100 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i--------------------~G-~p~y~sl~dl~~~~~i  100 (331)
                      +|+|||. |.+|......|.+.|++++ ++|++... +. .                    .| +....+++++.+  +.
T Consensus         2 kI~vIGl-G~~G~~lA~~La~~G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~--~a   77 (411)
T TIGR03026         2 KIAVIGL-GYVGLPLAALLADLGHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR--DA   77 (411)
T ss_pred             EEEEECC-CchhHHHHHHHHhcCCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--hC
Confidence            6889999 9999999999999999876 55654310 00 0                    13 344456777665  68


Q ss_pred             CEEEEecChhh----------HHHHHHHHHHc-CCcEEEEecCCCChhHHHHH
Q 020101          101 NASAIYVPPPF----------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRV  142 (331)
Q Consensus       101 Dlaii~vp~~~----------~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l  142 (331)
                      |++++++|...          +..+++...+. .-..+|+..+.++....+++
T Consensus        78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l  130 (411)
T TIGR03026        78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEV  130 (411)
T ss_pred             CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHH
Confidence            99999999653          55555554432 22334555666654444444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.44  E-value=0.026  Score=54.39  Aligned_cols=65  Identities=9%  Similarity=0.080  Sum_probs=49.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc---cccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP---VFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p---~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|.|+|. |++|+.+.+.+..+|++++ .+|+..  +...+..   .+.+++++..  +.|++++++|...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~--~~~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~  202 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSR--KSWPGVQSFAGREELSAFLS--QTRVLINLLPNTP  202 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCC--CCCCCceeecccccHHHHHh--cCCEEEECCCCCH
Confidence            4567899999 9999999999999999987 678754  2222222   2457888887  7899999999543

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.43  E-value=0.015  Score=56.42  Aligned_cols=92  Identities=15%  Similarity=0.154  Sum_probs=62.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------C---cccc-cCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G---LPVF-NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G---~p~y-~sl~dl~~~~~iDlaii~vp~  109 (331)
                      .+||+|+|+||-.|-.+.+.|.++ ..++.....-+..|+.+.       |   ++.- .+.+++ +..++|++++++|.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalPh   80 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALPH   80 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecCc
Confidence            578999999999999999999887 567442333322333211       1   1100 122333 22258999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      ....+.+.+..+.|++ ||-.+..|.
T Consensus        81 g~s~~~v~~l~~~g~~-VIDLSadfR  105 (349)
T COG0002          81 GVSAELVPELLEAGCK-VIDLSADFR  105 (349)
T ss_pred             hhHHHHHHHHHhCCCe-EEECCcccc
Confidence            9999999999999999 566777654

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=96.37  E-value=0.014  Score=58.56  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCC-CceecCcccccCHHHhh---hcCCCCEEEEecChhh---H
Q 020101           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG-GTEHLGLPVFNTVAEAK---AETKANASAIYVPPPF---A  112 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~-g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~~---~  112 (331)
                      .+++|+|+ |..+..+.+.+.+   .||++++.+|++.. +..+.|+|++.++++++   +++++|-++++.|...   .
T Consensus       126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~  204 (445)
T TIGR03025       126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI  204 (445)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHHH
Confidence            56889999 8888888888765   37899988876542 13578999998766654   4568999999988644   4


Q ss_pred             HHHHHHHHHcCCcEEEE
Q 020101          113 AAAILEAMEAELDLVVC  129 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi  129 (331)
                      .+.++.|.+.|++..++
T Consensus       205 ~~ll~~~~~~gv~V~~v  221 (445)
T TIGR03025       205 LELLLQLRDLGVDVRLV  221 (445)
T ss_pred             HHHHHHHHhcCCEEEEe
Confidence            56889999999987554

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.37  E-value=0.016  Score=54.01  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCC-ceecCcc-cccC---HHHhhhc----CC-CCEEEEecCh---
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-TEHLGLP-VFNT---VAEAKAE----TK-ANASAIYVPP---  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g-~~i~G~p-~y~s---l~dl~~~----~~-iDlaii~vp~---  109 (331)
                      +|+|.|+||..|+.+++.|.+.|+++.+.+ ||.... ..+..++ -|.+   +.+....    .. +|.++.+.|.   
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~   80 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD   80 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence            378899999999999999999999877554 443210 1111111 2233   3333310    14 8888877763   


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        +....+++.|.+.|++.+|..++
T Consensus        81 ~~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        81 LAPPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             hhHHHHHHHHHHHHcCCCEEEEeec
Confidence              34567888899999999776654

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.36  E-value=0.012  Score=57.34  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeC-CCCCCceec---Ccccc-------c-----CHH-HhhhcCCCCEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVT-PKKGGTEHL---GLPVF-------N-----TVA-EAKAETKANASA  104 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~Vn-P~~~g~~i~---G~p~y-------~-----sl~-dl~~~~~iDlai  104 (331)
                      ++|+|+|++|.+|+.+++.+.+.+ +++++.+. ....|+.+.   ....|       .     +++ +..  .++|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvVf   78 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIVF   78 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEEE
Confidence            478999999999999999888865 68886643 322233321   11111       1     111 111  3799999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +++|...+.+..+++.++|++. +..+.-|
T Consensus        79 ~a~p~~~s~~~~~~~~~~G~~V-IDlsg~f  107 (341)
T TIGR00978        79 SALPSEVAEEVEPKLAEAGKPV-FSNASNH  107 (341)
T ss_pred             EeCCHHHHHHHHHHHHHCCCEE-EECChhh
Confidence            9999999999999999999986 4455544

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK07574 formate dehydrogenase; Provisional

Probab=96.35  E-value=0.031  Score=55.51  Aligned_cols=107  Identities=15%  Similarity=0.115  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v  116 (331)
                      +..+|.|||. |++|+.+++.+..+|+++. .+||.....   ...|+..+.+++++..  ..|++++++|-.. ...++
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li  266 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPLHPETEHLF  266 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCCCHHHHHHh
Confidence            4566899999 9999999999999999987 778754111   1346666789999987  7899999999533 33333


Q ss_pred             H-HHHH-cCCc-EEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 L-EAME-AELD-LVVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~-~~~~-~Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      . +.++ .+-. .+|+.+-|- --+...|.++. ++..+.
T Consensus       267 ~~~~l~~mk~ga~lIN~aRG~-iVDe~AL~~AL-~sG~i~  304 (385)
T PRK07574        267 DADVLSRMKRGSYLVNTARGK-IVDRDAVVRAL-ESGHLA  304 (385)
T ss_pred             CHHHHhcCCCCcEEEECCCCc-hhhHHHHHHHH-HhCCcc
Confidence            2 2222 2222 334444453 22344555555 444443

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.35  E-value=0.011  Score=57.33  Aligned_cols=86  Identities=16%  Similarity=0.028  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCCCCC-----------------------Cce--ecC--cccc--cC
Q 020101           44 RVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKG-----------------------GTE--HLG--LPVF--NT   90 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP~~~-----------------------g~~--i~G--~p~y--~s   90 (331)
                      +|+|+|+ |++|+.+++.+.+.    ++++++..+....                       |+.  +.|  ++++  ++
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            4789999 99999999998875    3788854332210                       000  113  2333  25


Q ss_pred             HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEe
Q 020101           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCI  130 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~  130 (331)
                      +++++= +.++|+++.+++.....+.+..++++|.+.+++-
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~S  120 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFS  120 (325)
T ss_pred             hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEec
Confidence            666653 3589999999999999999999999999986653

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.32  E-value=0.027  Score=54.74  Aligned_cols=66  Identities=21%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|+|||. |++|+.+++.+..+|++++ ..|+... ..........+++++.+  +.|++++++|...
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDiVil~lP~t~  210 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPN-KDLDFLTYKDSVKEAIK--DADIISLHVPANK  210 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChh-HhhhhhhccCCHHHHHh--cCCEEEEeCCCcH
Confidence            3457899999 9999999999999999987 6776642 11111233347999887  7899999999654

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.30  E-value=0.017  Score=56.83  Aligned_cols=116  Identities=14%  Similarity=0.078  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHH-HcCCe---EEEEeCC-CCCCce--ecCcc-cccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAI-EYGTK---MVGGVTP-KKGGTE--HLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~-~~g~~---iv~~VnP-~~~g~~--i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +|+|+||+|-.|+..++.|. +..|.   ++ .+.. +..|+.  ..|.. ...++++.....++|+++.+.+.+.+.+.
T Consensus         2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~-~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~   80 (366)
T TIGR01745         2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI   80 (366)
T ss_pred             eEEEEcCcCHHHHHHHHHHHhCCCCccccEE-EEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence            68999999999999999888 44554   33 3433 222222  11222 11122221011279999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChh-H---------HHHHHHHHhccCCcE-EEccCCCCc
Q 020101          116 ILEAMEAELDLVVCITE-GIPQH-D---------MVRVKAALNNQSKTR-LVGPNCPGV  162 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~-G~~e~-~---------~~~l~~~a~~~~gi~-viGPnc~Gi  162 (331)
                      ..++.++|...+|+=.+ -|.-+ +         .+.+...  .+.|+. +..|||.-+
T Consensus        81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~--~~~gi~~ianPNCst~  137 (366)
T TIGR01745        81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG--LNNGIRTFVGGNCTVS  137 (366)
T ss_pred             HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhH--HhCCcCeEECcCHHHH
Confidence            99999999875554233 23211 1         1223221  246765 889999543

>PLN03139 formate dehydrogenase; Provisional

Probab=96.29  E-value=0.035  Score=55.12  Aligned_cols=107  Identities=12%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v  116 (331)
                      ...+|.|||. |++|+.+++.+..+|.+++ .+||.....   ...|+..+.+++++..  +.|++++++|- +....++
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li  273 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLL-YHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMF  273 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCCEEE-EECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHh
Confidence            3556889999 9999999999999999987 577753111   2346666779999987  79999999994 3333443


Q ss_pred             -HHHHH-cCCcEEEEecCCCC-hhHHHHHHHHHhccCCcE
Q 020101          117 -LEAME-AELDLVVCITEGIP-QHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 -~~~~~-~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~  153 (331)
                       ++.++ .+-.. +++..+-. --+.+.|.++. ++..+.
T Consensus       274 ~~~~l~~mk~ga-~lIN~aRG~iVDe~AL~~AL-~sG~l~  311 (386)
T PLN03139        274 NKERIAKMKKGV-LIVNNARGAIMDTQAVADAC-SSGHIG  311 (386)
T ss_pred             CHHHHhhCCCCe-EEEECCCCchhhHHHHHHHH-HcCCce
Confidence             22222 23333 33333321 23444555555 455444

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.29  E-value=0.02  Score=56.67  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=49.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|.|||. |++|+.+.+.+..+|.+++ ..||..  .+......|.+++++..  +.|++++.+|-
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~--~~~~~~~~~~~L~ell~--~sDiI~lh~PL  177 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPR--ADRGDEGDFRSLDELVQ--EADILTFHTPL  177 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccccccCCHHHHHh--hCCEEEEeCCC
Confidence            4567899999 9999999999999999987 778864  22111124678999987  78999999984

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=96.22  E-value=0.022  Score=57.27  Aligned_cols=85  Identities=19%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCC--CCceecCcccccCHHHhh---hcCCCCEEEEecChh---h
Q 020101           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---F  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~--~g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~---~  111 (331)
                      .+|+|+|+ |..|..+.+.+.+   .||++++.+|.+.  .+.. .|+|++.++++++   +++++|-++++.|..   .
T Consensus       129 ~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~  206 (451)
T TIGR03023       129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAEDR  206 (451)
T ss_pred             CcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHHH
Confidence            56899999 7788888888765   3789998776443  2233 7899998766654   356899999999874   3


Q ss_pred             HHHHHHHHHHcCCcEEEE
Q 020101          112 AAAAILEAMEAELDLVVC  129 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi  129 (331)
                      ..++++.|.+.|++..++
T Consensus       207 ~~~ll~~~~~~gv~V~vv  224 (451)
T TIGR03023       207 ILELLDALEDLTVDVRLV  224 (451)
T ss_pred             HHHHHHHHHhcCCEEEEe
Confidence            567888999999987554

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.19  E-value=0.024  Score=54.55  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~  121 (331)
                      .+|+|+|+||-.|..+++.|.++ .+++++...-+.       ... .+.+++.+  ++|++++++|.+.+.+.+.++.+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~~~-~~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~   71 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------KDA-AERAKLLN--AADVAILCLPDDAAREAVSLVDN   71 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------cCc-CCHhHhhc--CCCEEEECCCHHHHHHHHHHHHh
Confidence            36899999999999999999987 567774432211       001 13455545  69999999999999999999989


Q ss_pred             cCCcEEEEecCCC
Q 020101          122 AELDLVVCITEGI  134 (331)
Q Consensus       122 ~Gi~~ivi~t~G~  134 (331)
                      .|++. |-.+.-|
T Consensus        72 ~g~~V-IDlSadf   83 (310)
T TIGR01851        72 PNTCI-IDASTAY   83 (310)
T ss_pred             CCCEE-EECChHH
Confidence            88874 6567544

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.15  E-value=0.042  Score=52.23  Aligned_cols=84  Identities=21%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeE-EEEeCCCCCCc---eecCc-ccc-cCH-HHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGT---EHLGL-PVF-NTV-AEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~i-v~~VnP~~~g~---~i~G~-p~y-~sl-~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ..+|+|+|. |.||+.+.+.+++.|+.+ +.+.++.....   ...|+ ..+ .+. .+...  ..|++|++||.....+
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~   79 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE   79 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence            467889998 999999999999999864 55788765211   11333 222 222 22222  5799999999999999


Q ss_pred             HHHHHHH-cCCcEEE
Q 020101          115 AILEAME-AELDLVV  128 (331)
Q Consensus       115 ~v~~~~~-~Gi~~iv  128 (331)
                      ++++... .....+|
T Consensus        80 ~l~~l~~~l~~g~iv   94 (279)
T COG0287          80 VLKELAPHLKKGAIV   94 (279)
T ss_pred             HHHHhcccCCCCCEE
Confidence            9999985 4444444

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=96.12  E-value=0.083  Score=53.06  Aligned_cols=125  Identities=16%  Similarity=0.268  Sum_probs=87.4

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI  257 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~  257 (331)
                      ..|+|+.+.--++++.+.++.....|--..-|.-+|+.+ ..-.+.+.++-+..||++|+|++=+=++ =+-..-+..++
T Consensus       290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii  368 (422)
T PLN00124        290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV  368 (422)
T ss_pred             CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence            569999999999999999999999999999999999976 3566778888899999999998832231 00112223344


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  325 (331)
Q Consensus       258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~  325 (331)
                      ++++   .++|||+=..|...                    +.=...|+.+|+ .+...++|.++++...+
T Consensus       369 ~a~~~~~~~~pivvRl~Gtn~--------------------~~g~~~l~~~~~-~~~~~~~l~~A~~~~v~  418 (422)
T PLN00124        369 NAAKQVGLKVPLVVRLEGTNV--------------------DQGKRILKESGM-TLITAEDLDDAAEKAVK  418 (422)
T ss_pred             HHHHhcCCCCcEEEEcCCCCH--------------------HHHHHHHHhCCC-CeEEcCCHHHHHHHHHH
Confidence            4544   68899986666433                    333678889994 23344444455554443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.12  E-value=0.021  Score=54.42  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-------ecC--------------cccccCHHHhhhcC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------HLG--------------LPVFNTVAEAKAET   98 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-------i~G--------------~p~y~sl~dl~~~~   98 (331)
                      +..+|+|||+ |.||..+...+.+.|++++ .+|++... +.       ..|              +....++++..+  
T Consensus         3 ~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--   78 (311)
T PRK06130          3 PIQNLAIIGA-GTMGSGIAALFARKGLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS--   78 (311)
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--
Confidence            3457899999 9999999999998899876 66654310 00       011              123345666555  


Q ss_pred             CCCEEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCChh
Q 020101           99 KANASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIPQH  137 (331)
Q Consensus        99 ~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~iv-i~t~G~~e~  137 (331)
                      +.|++++++|++.  ..+++.++... .-+.++ ..+.|.+.+
T Consensus        79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~  121 (311)
T PRK06130         79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT  121 (311)
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence            6899999999875  45566555442 223333 355677533

>PLN02858 fructose-bisphosphate aldolase

Probab=96.10  E-value=0.031  Score=63.79  Aligned_cols=110  Identities=19%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      .+.+|.+||. |+||....++|.+.|+++. ..|.+....+   -.|....+|..|+.+  +.|++++++|...+.+.+-
T Consensus         3 ~~~~IGfIGL-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~   78 (1378)
T PLN02858          3 SAGVVGFVGL-DSLSFELASSLLRSGFKVQ-AFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVF   78 (1378)
T ss_pred             CCCeEEEEch-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHH
Confidence            3567899999 9999999999999999866 5565541111   247788899999987  7999999999876655442


Q ss_pred             ----HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCC--cEEE
Q 020101          118 ----EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLV  155 (331)
Q Consensus       118 ----~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~vi  155 (331)
                          .+++. ....+|+-.+-.+.+..+++.+.+ ++.|  +.++
T Consensus        79 ~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l-~~~g~~~~~l  122 (1378)
T PLN02858         79 FGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKL-TERKEQIFLV  122 (1378)
T ss_pred             hchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHH-HhcCCceEEE
Confidence                23332 122345444444556666676665 5566  6654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.09  E-value=0.0086  Score=56.65  Aligned_cols=92  Identities=16%  Similarity=0.080  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---------c-----------------CcccccCHHHhhh
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---------L-----------------GLPVFNTVAEAKA   96 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---------~-----------------G~p~y~sl~dl~~   96 (331)
                      +|+|||+ |.||..++..+.+.|++++ .+|++... +..         .                 .+....++++..+
T Consensus         3 ~V~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          3 KLVVVGA-GVMGRGIAYVFAVSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             EEEEECc-cHHHHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            5889999 9999999999999999866 55654310 000         0                 1233456766665


Q ss_pred             cCCCCEEEEecChhhHH--HHHHHHHHcCC-cE-EEEecCCCChhHH
Q 020101           97 ETKANASAIYVPPPFAA--AAILEAMEAEL-DL-VVCITEGIPQHDM  139 (331)
Q Consensus        97 ~~~iDlaii~vp~~~~~--~~v~~~~~~Gi-~~-ivi~t~G~~e~~~  139 (331)
                        +.|+++.++|.+...  .++.++.+.-- .. +++-++.++.++.
T Consensus        81 --~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l  125 (288)
T PRK09260         81 --DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI  125 (288)
T ss_pred             --CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence              799999999987642  34444333222 22 2233555665543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.05  E-value=0.029  Score=52.84  Aligned_cols=89  Identities=16%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcc-----------cccCHHHhhhcCCCCEEEEecCh
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLP-----------VFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p-----------~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +|+|+|+ |.+|..+...|.+.|+++. .+++.... +.  ..|..           ...+.+++ +  ++|++++++|+
T Consensus         2 ~I~IiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGA-GAIGGLFGAALAQAGHDVT-LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAVKA   76 (304)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEeccc
Confidence            6889999 9999999999988888866 55542210 11  12332           23345554 3  79999999999


Q ss_pred             hhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 020101          110 PFAAAAILEAMEA-EL-DLVVCITEGIPQH  137 (331)
Q Consensus       110 ~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~  137 (331)
                      ..+.++++.+... +- ..++.++.|+...
T Consensus        77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~  106 (304)
T PRK06522         77 YQLPAALPSLAPLLGPDTPVLFLQNGVGHL  106 (304)
T ss_pred             ccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence            9998888887653 22 2566678898633

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.04  E-value=0.033  Score=53.63  Aligned_cols=105  Identities=16%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH--H
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI--L  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v--~  117 (331)
                      ...+|.|+|. |++|+.+++.+..+|.+++ .+||... ....+++ |.+++++..  ..|++++.+|-.. ....+  +
T Consensus       144 ~gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~-~~~~~~~-~~~l~ell~--~sDvv~lh~Plt~~T~~li~~~  217 (311)
T PRK08410        144 KGKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGK-NKNEEYE-RVSLEELLK--TSDIISIHAPLNEKTKNLIAYK  217 (311)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCcc-ccccCce-eecHHHHhh--cCCEEEEeCCCCchhhcccCHH
Confidence            4567889999 9999999999999999988 7888542 2223443 568999998  7899999999432 22222  2


Q ss_pred             HHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcE
Q 020101          118 EAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTR  153 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~  153 (331)
                      .....+-.. +++..+-.+ -+...|.++. ++..+.
T Consensus       218 ~~~~Mk~~a-~lIN~aRG~vVDe~AL~~AL-~~g~i~  252 (311)
T PRK08410        218 ELKLLKDGA-ILINVGRGGIVNEKDLAKAL-DEKDIY  252 (311)
T ss_pred             HHHhCCCCe-EEEECCCccccCHHHHHHHH-HcCCeE
Confidence            333334333 333333211 2333455554 455454

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=96.04  E-value=0.036  Score=56.53  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCceecCcccccCHHHhh---hcCCCCEEEEecChh---hHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---FAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~---~~~  113 (331)
                      .+++|+|+ |..|+.+++.+.+.   |+++++.+|.+..+..+.|+|++.+.+++.   .+..+|+ +++.|..   ...
T Consensus       147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~  224 (476)
T PRK15204        147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTH  224 (476)
T ss_pred             CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHH
Confidence            45889999 88888888888764   899998898665435688999998866542   2235675 7788743   445


Q ss_pred             HHHHHHHHcCCcEEEEe
Q 020101          114 AAILEAMEAELDLVVCI  130 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~  130 (331)
                      +.+++|.+.|++.+.+.
T Consensus       225 ~il~~l~~~gv~~V~vI  241 (476)
T PRK15204        225 FWLRELSKHHCRSVTVV  241 (476)
T ss_pred             HHHHHHhhcCCeEEEEe
Confidence            78889988898754433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.02  E-value=0.0079  Score=50.96  Aligned_cols=107  Identities=15%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce---ecCc----ccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE---HLGL----PVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~---i~G~----p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|+|+|+ |.+|+.+.+.+.+.| .+++ .+|++... ++   ..+.    ..+.+.+++.+  ++|++|.++|+..
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~-v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~   93 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELGAAKIV-IVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGM   93 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEE-EEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCC
Confidence            4567889999 999999999998886 4444 77765411 11   1122    13456666554  7999999999987


Q ss_pred             H----HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          112 A----AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       112 ~----~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +    ....+.+++.|. .++-.+.- ++..  ++.+.+ ++.|++++.
T Consensus        94 ~~~~~~~~~~~~~~~~~-~v~D~~~~-~~~~--~l~~~~-~~~g~~~v~  137 (155)
T cd01065          94 KPGDELPLPPSLLKPGG-VVYDVVYN-PLET--PLLKEA-RALGAKTID  137 (155)
T ss_pred             CCCCCCCCCHHHcCCCC-EEEEcCcC-CCCC--HHHHHH-HHCCCceeC
Confidence            5    112233444443 22333322 2222  555556 677877664

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.98  E-value=0.049  Score=52.95  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v-  116 (331)
                      +..+|.|||. |++|+.+.+.+..+|++++ .+||.....  ...|.+ +.+++++..  +.|++++++|... ...++ 
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t~~T~~~i~  223 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLTKETYHMIN  223 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCChHHhhccC
Confidence            4567889999 9999999999999999977 778754211  123443 468999887  7899999999643 33333 


Q ss_pred             HHHHHc-CCc-EEEEecCCCChhHHHHHHHHHhccCCc
Q 020101          117 LEAMEA-ELD-LVVCITEGIPQHDMVRVKAALNNQSKT  152 (331)
Q Consensus       117 ~~~~~~-Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi  152 (331)
                      ++..++ +-. .+++.+.|-- -+...|.+.. ++..+
T Consensus       224 ~~~~~~mk~ga~lIN~aRg~~-vd~~aL~~aL-~~g~i  259 (333)
T PRK13243        224 EERLKLMKPTAILVNTARGKV-VDTKALVKAL-KEGWI  259 (333)
T ss_pred             HHHHhcCCCCeEEEECcCchh-cCHHHHHHHH-HcCCe
Confidence            233332 222 2344444532 2334455544 44433

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.94  E-value=0.0076  Score=53.08  Aligned_cols=64  Identities=19%  Similarity=0.348  Sum_probs=48.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ...+|.|+|. |++|+.+++.++.+|.+++ .+||......   ..+. .|.+++|+..  ..|++++..|.
T Consensus        35 ~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~pl  101 (178)
T PF02826_consen   35 RGKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPL  101 (178)
T ss_dssp             TTSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSS
T ss_pred             CCCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhcc
Confidence            4567899999 9999999999999999987 8888762111   2234 4669999988  79999999994

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=95.90  E-value=0.039  Score=55.59  Aligned_cols=82  Identities=18%  Similarity=0.192  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCC--CCceecCcccccCHHHh---hhcCCCCEEEEecCh---hh
Q 020101           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNTVAEA---KAETKANASAIYVPP---PF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~--~g~~i~G~p~y~sl~dl---~~~~~iDlaii~vp~---~~  111 (331)
                      .+++|+|+ |..|..+.+.+.+   .|+++++.+++..  .+..+.|+|++.+ +++   ..++++|.++++.|.   +.
T Consensus       126 rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~~  203 (456)
T TIGR03022       126 RPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAED  203 (456)
T ss_pred             ceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHHH
Confidence            45889999 7788888888764   3799998887542  2356789999876 554   344679999999983   45


Q ss_pred             HHHHHHHHHHcCCcE
Q 020101          112 AAAAILEAMEAELDL  126 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~  126 (331)
                      ..+.++.|.+.|+..
T Consensus       204 ~~~ll~~l~~~~v~~  218 (456)
T TIGR03022       204 MARLVRKLGALHFRN  218 (456)
T ss_pred             HHHHHHHHHhCCCeE
Confidence            667788888888833

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.90  E-value=0.018  Score=56.07  Aligned_cols=85  Identities=15%  Similarity=0.052  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCe---EEEEeCCCCCCcee--cCcc-cccC--HHHhhhcCCCCEEEEecChhhHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LGLP-VFNT--VAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~---iv~~VnP~~~g~~i--~G~p-~y~s--l~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +|+|+||||..|+.+++.|.+.++.   ++.....+..|+.+  .|.. .+.+  .+++ .  ++|++++++|.....+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~   77 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEF   77 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHH
Confidence            4789999999999999999886654   33222333333332  2221 2222  2233 3  79999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC
Q 020101          116 ILEAMEAELDLVVCITE  132 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~  132 (331)
                      +.++.++|++ +|=.++
T Consensus        78 a~~~~~~G~~-VID~ss   93 (339)
T TIGR01296        78 APKAAKCGAI-VIDNTS   93 (339)
T ss_pred             HHHHHHCCCE-EEECCH
Confidence            9999999985 343444

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.85  E-value=0.026  Score=53.17  Aligned_cols=91  Identities=10%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------ec-------------CcccccCHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------HL-------------GLPVFNTVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------i~-------------G~p~y~sl~dl~   95 (331)
                      .+|+|||+ |.||..++..+...|++++ .+|++...-+              -.             ++....+++++ 
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-   80 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL-   80 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence            46889999 9999999999999899866 5665431000              01             22334456553 


Q ss_pred             hcCCCCEEEEecChhhH--HHHHHHHHHc-CCcEEE-EecCCCChhH
Q 020101           96 AETKANASAIYVPPPFA--AAAILEAMEA-ELDLVV-CITEGIPQHD  138 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~~--~~~v~~~~~~-Gi~~iv-i~t~G~~e~~  138 (331)
                      +  +.|++++++|++..  .+++.++.+. .-..++ --++|++.++
T Consensus        81 ~--~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~  125 (282)
T PRK05808         81 K--DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE  125 (282)
T ss_pred             c--cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            3  68999999997555  5666665543 223333 2345665444

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.81  E-value=0.044  Score=52.81  Aligned_cols=62  Identities=18%  Similarity=0.128  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|.|+|. |++|+.+.+.+..+|.+++ .+++..  ...... -|.+++++..  ..|++++.+|-
T Consensus       146 ~gktvgIiG~-G~IG~~va~~l~~fg~~V~-~~~~~~--~~~~~~-~~~~l~ell~--~sDiv~l~~Pl  207 (314)
T PRK06932        146 RGSTLGVFGK-GCLGTEVGRLAQALGMKVL-YAEHKG--ASVCRE-GYTPFEEVLK--QADIVTLHCPL  207 (314)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCc--cccccc-ccCCHHHHHH--hCCEEEEcCCC
Confidence            4567899999 9999999999999999987 577653  211111 2678999988  78999999994

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.80  E-value=0.042  Score=55.77  Aligned_cols=84  Identities=12%  Similarity=0.022  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCceecCcccccCHHHhh---hcCCCCEEEEecChh---hHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---FAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~---~~~~iDlaii~vp~~---~~~  113 (331)
                      .+|+|+|+ |..|..+.+.+++.   |+++++.+|.+..  .-.++|++.++++++   +++++|-++++.|..   ...
T Consensus       144 rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~--~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~  220 (463)
T PRK10124        144 RMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP--GGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK  220 (463)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc--ccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence            45889999 88888888888753   7899988875431  112345587766654   457899999999854   456


Q ss_pred             HHHHHHHHcCCcEEEE
Q 020101          114 AAILEAMEAELDLVVC  129 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi  129 (331)
                      ++++.|.+.+++..++
T Consensus       221 ell~~~~~~~v~V~iv  236 (463)
T PRK10124        221 KLVRQLADTTCSVLLI  236 (463)
T ss_pred             HHHHHHHHcCCeEEEe
Confidence            6788899999987554

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.80  E-value=0.054  Score=50.30  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCCc-eecCcccccCHHHhhhc-CCCCEEEEecChh-hHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGGT-EHLGLPVFNTVAEAKAE-TKANASAIYVPPP-FAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g~-~i~G~p~y~sl~dl~~~-~~iDlaii~vp~~-~~~~~v~~~  119 (331)
                      ++.+||. ||||..+.+++.+.|.++|+ -+||....+ .-.|...-.|++++..+ ..|.++-+-+|+- .+..+++++
T Consensus         2 ~iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l   80 (300)
T COG1023           2 QIGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL   80 (300)
T ss_pred             cceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence            4677999 99999999999999999663 477765311 13566667788888765 4578888999987 677777776


Q ss_pred             HHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          120 MEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      ..+==+.=+++-.|-+. .|..+..+.. +++|+.++--.+.|=+.
T Consensus        81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l-~~kgi~flD~GTSGG~~  125 (300)
T COG1023          81 APLLSAGDIVIDGGNSNYKDSLRRAKLL-AEKGIHFLDVGTSGGVW  125 (300)
T ss_pred             HhhcCCCCEEEECCccchHHHHHHHHHH-HhcCCeEEeccCCCCch
Confidence            65432222445666543 3433333333 58899988776655443

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.78  E-value=0.037  Score=57.07  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v-  116 (331)
                      ...+|.|+|. |++|+.+++.++.+|++++ .+||....+  ...|++.+++++++..  +.|++++++|.. ....++ 
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt~~T~~li~  212 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLTPETRGLIG  212 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCChhhccCcC
Confidence            3466889999 9999999999999999987 788753111  2346655668999987  799999999954 333333 


Q ss_pred             -HHHHHcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 -LEAMEAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 -~~~~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                       +.....+-.. +|+.+.|-- -+...|.++. ++..+.
T Consensus       213 ~~~l~~mk~ga~lIN~aRG~~-vde~aL~~aL-~~g~i~  249 (525)
T TIGR01327       213 AEELAKMKKGVIIVNCARGGI-IDEAALYEAL-EEGHVR  249 (525)
T ss_pred             HHHHhcCCCCeEEEEcCCCce-eCHHHHHHHH-HcCCee
Confidence             2222233333 344444421 2333444544 454444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.78  E-value=0.027  Score=53.73  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCc-eecCcccc-------cCHHHhhhcCCCCEEEEecChh----
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT-EHLGLPVF-------NTVAEAKAETKANASAIYVPPP----  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~-~i~G~p~y-------~sl~dl~~~~~iDlaii~vp~~----  110 (331)
                      +|+|.|+||..|+.+++.|.+.|+++.+.+. +..... ...|+.++       .++.++.+  ++|+++-+++..    
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~~   79 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSDL   79 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCCc
Confidence            6889999999999999999999999875553 221100 11233322       23455555  789988765421    


Q ss_pred             ---------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ---------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ---------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                               ....+++.|.+.|++.++.+++
T Consensus        80 ~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss  110 (317)
T CHL00194         80 YNAKQIDWDGKLALIEAAKAAKIKRFIFFSI  110 (317)
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence                     2356778888899998776655

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.76  E-value=0.068  Score=53.49  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCccccc-CHHHhhh-------------cCCCCEEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFN-TVAEAKA-------------ETKANASAI  105 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~-sl~dl~~-------------~~~iDlaii  105 (331)
                      .+|+|||. |.+|......|.+.|++++ ++|++... +.  ....|.+. .++++..             ..+.|++++
T Consensus         4 ~kI~VIGl-G~~G~~~A~~La~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii   81 (415)
T PRK11064          4 ETISVIGL-GYIGLPTAAAFASRQKQVI-GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI   81 (415)
T ss_pred             cEEEEECc-chhhHHHHHHHHhCCCEEE-EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence            56899999 9999999999999999977 66654410 11  12344443 4554421             015899999


Q ss_pred             ecCh----------hhHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHH
Q 020101          106 YVPP----------PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKA  144 (331)
Q Consensus       106 ~vp~----------~~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~  144 (331)
                      ++|.          ..+..+++..... .-..+|+..+..+....+++.+
T Consensus        82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~  131 (415)
T PRK11064         82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE  131 (415)
T ss_pred             EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence            9998          4666666665553 2234555555554444444443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.70  E-value=0.019  Score=55.62  Aligned_cols=70  Identities=23%  Similarity=0.333  Sum_probs=54.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI  116 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v  116 (331)
                      ..+|.|||. |++|+.+.+.++.+|++++ +.||... ++   ..+..-..+++++..  ..|++++.+|- +....++
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~-~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i  215 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSP-RERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLI  215 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCc-hhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhccc
Confidence            556889999 9999999999999999988 8888321 22   344555678999998  78999999985 3344444

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.67  E-value=0.038  Score=50.01  Aligned_cols=91  Identities=16%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcC--C--eEEEEeCCCCCCc---eecCcccccC----HHHhhhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYG--T--KMVGGVTPKKGGT---EHLGLPVFNT----VAEAKAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g--~--~iv~~VnP~~~g~---~i~G~p~y~s----l~dl~~~~~iDlaii~vp  108 (331)
                      ++..||+|||- |++|.-++-.+++.|  .  ....++||..+|-   .-.|++.-..    +-.+|+..++|++...|.
T Consensus         2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats   80 (310)
T COG4569           2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS   80 (310)
T ss_pred             CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence            45678999996 999988775555553  2  2333799987652   2456664432    444566667889999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +-.+.+......+.||+. +-+|+
T Consensus        81 a~~h~~~a~~~ae~gi~~-idltp  103 (310)
T COG4569          81 AGAHVKNAAALAEAGIRL-IDLTP  103 (310)
T ss_pred             cchhhcchHhHHhcCCce-eecch
Confidence            999999999999999998 44565

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.66  E-value=0.096  Score=48.05  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      +++.+|+|+|+||.+|+.+++.|.+.|+++++.+
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~   48 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGV   48 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence            4567889999999999999999999999977543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.62  E-value=0.056  Score=48.34  Aligned_cols=64  Identities=20%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCceecCc-----cccc--CHHHhhhcCCCCEEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGL-----PVFN--TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~i~G~-----p~y~--sl~dl~~~~~iDlaii~vp~  109 (331)
                      +||+||||||+.|+.+++...+.|.++++.| ||... ....++     .+|.  ++.+...  ..|++|.+..+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-AARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-cccccceeecccccChhhhHhhhc--CCceEEEeccC
Confidence            4789999999999999999999999988765 55542 111333     3443  2334444  68999977644

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.56  E-value=0.081  Score=49.96  Aligned_cols=89  Identities=21%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC-------CCceec---C-----cccccCHHHhhhcCCCCEEEEecC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-------GGTEHL---G-----LPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~-------~g~~i~---G-----~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +|+|+|+ |.+|......|.+.|.++. .+++..       .|-.+.   +     .+...+.++..+  ++|++++++|
T Consensus         2 kI~IiG~-G~iG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilavk   77 (305)
T PRK12921          2 RIAVVGA-GAVGGTFGGRLLEAGRDVT-FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAVK   77 (305)
T ss_pred             eEEEECC-CHHHHHHHHHHHHCCCceE-EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEec
Confidence            6889999 9999999999988888765 444411       010110   1     112334555444  6899999999


Q ss_pred             hhhHHHHHHHHHHc-CC-cEEEEecCCCCh
Q 020101          109 PPFAAAAILEAMEA-EL-DLVVCITEGIPQ  136 (331)
Q Consensus       109 ~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e  136 (331)
                      +..+.++++++... +- ..++.++.|+..
T Consensus        78 ~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~  107 (305)
T PRK12921         78 AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ  107 (305)
T ss_pred             ccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence            99999988877653 22 344556779853

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.56  E-value=0.094  Score=52.45  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=50.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|+|. |++|+.+++.+..+|.+++ ..||... ....+...+.+++++..  ..|++++.+|-.
T Consensus       150 ~gktvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~sDiVslh~Plt  214 (409)
T PRK11790        150 RGKTLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDK-LPLGNARQVGSLEELLA--QSDVVSLHVPET  214 (409)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCcc-cccCCceecCCHHHHHh--hCCEEEEcCCCC
Confidence            4566889999 9999999999999999987 7887641 12223433458999998  789999999953

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.46  E-value=0.063  Score=54.94  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-e---------------------cC-cccccCHHHhhhcCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H---------------------LG-LPVFNTVAEAKAETK   99 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i---------------------~G-~p~y~sl~dl~~~~~   99 (331)
                      .+|+|||+ |.||...+..+.+.|++++ ..|+.....+ .                     .| +...++++++.+  +
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--~   80 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--G   80 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--C
Confidence            36889999 9999999999999999866 6666542110 0                     12 445567877766  7


Q ss_pred             CCEEEEecChhhH-HH-HHHHHHHc-CCc-EEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          100 ANASAIYVPPPFA-AA-AILEAMEA-ELD-LVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       100 iDlaii~vp~~~~-~~-~v~~~~~~-Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      .|+++.++|.+.. .. +..++.+. .-+ .++.-|+|++.++.   .+.+.+...+-+.-|+.
T Consensus        81 aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l---~~~~~~~~r~~~~hP~n  141 (495)
T PRK07531         81 ADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL---QEGMTHPERLFVAHPYN  141 (495)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH---HhhcCCcceEEEEecCC
Confidence            9999999998862 22 33333221 112 23334457765443   33331222344556653

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.35  E-value=0.2  Score=47.94  Aligned_cols=185  Identities=18%  Similarity=0.201  Sum_probs=111.3

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEE-EEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv-~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .|...+|.-||. |.||.....+|.+.||+++ +-+++..- ++  ..|..++.+..|+.+  ..|+++.++|.......
T Consensus        32 ~~s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~-~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~  107 (327)
T KOG0409|consen   32 TPSKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKC-KEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKD  107 (327)
T ss_pred             CcccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHH-HHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHH
Confidence            356778899999 9999999999999999954 34554321 12  368999999999998  89999999987655443


Q ss_pred             -HHHHHHcCC-------cEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccC-CCCC--------
Q 020101          116 -ILEAMEAEL-------DLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIM-PGYI--------  177 (331)
Q Consensus       116 -v~~~~~~Gi-------~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc~Gi~~p~~~~~~~~-~~~~--------  177 (331)
                       +..  +.|+       +...+-.+-..+.-..+|.+.+ +..+.+ +=.|=+-|.--...-.+.|+ .+..        
T Consensus       108 v~~g--~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i-~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~  184 (327)
T KOG0409|consen  108 VLLG--KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAI-SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP  184 (327)
T ss_pred             HhcC--CCcceeeccCCCceEEeccccCHHHHHHHHHHH-HhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence             222  2222       1111222233344456777776 455556 55787777665441122222 1110        


Q ss_pred             --CCCC-CEEEEecChHHHHH-HH-HHHH-hCCCCceEEEecCCCCCCCCCHHHHHHHhhc
Q 020101          178 --HKPG-RIGIVSRSGTLTYE-AV-FQTT-AVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA  232 (331)
Q Consensus       178 --~~~G-~valisQSG~~~~~-~~-~~~~-~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~  232 (331)
                        ---| ++=+..++|+-... +. +++. -.=+|++-.+.+|-+.  +++...+++-+..
T Consensus       185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~--GLd~~~l~eiln~  243 (327)
T KOG0409|consen  185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL--GLDAKKLLEILNT  243 (327)
T ss_pred             HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhc
Confidence              0124 57777777765433 11 1111 1234556666666665  7777777777665

>PLN02928 oxidoreductase family protein

Probab=95.31  E-value=0.08  Score=51.77  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=48.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec---------------CcccccCHHHhhhcCCCCEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL---------------GLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~---------------G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      +..+|.|+|. |++|+.+++.+..+|.+++ .+||........               +. -+.+++++..  +.|++++
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl  232 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVL  232 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEE
Confidence            4567899999 9999999999999999987 778753111110               11 3568999987  7899999


Q ss_pred             ecCh
Q 020101          106 YVPP  109 (331)
Q Consensus       106 ~vp~  109 (331)
                      ++|-
T Consensus       233 ~lPl  236 (347)
T PLN02928        233 CCTL  236 (347)
T ss_pred             CCCC
Confidence            9984

>PLN00016 RNA-binding protein; Provisional

Probab=95.31  E-value=0.085  Score=51.65  Aligned_cols=92  Identities=11%  Similarity=0.022  Sum_probs=60.4

Q ss_pred             CCeEEEEE----cCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-------------ecCcccc-cCHHH---hhhcCC
Q 020101           41 KNTRVICQ----GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------------HLGLPVF-NTVAE---AKAETK   99 (331)
Q Consensus        41 k~~~VaIv----Gasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-------------i~G~p~y-~sl~d---l~~~~~   99 (331)
                      .+.+|+|+    |++|.+|+.+++.|.+.|+++++.+........             ..|+..+ .++.+   +....+
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~  130 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG  130 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence            34679999    999999999999999999998754332210000             1133322 35544   332236


Q ss_pred             CCEEEEecC--hhhHHHHHHHHHHcCCcEEEEecC
Q 020101          100 ANASAIYVP--PPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       100 iDlaii~vp--~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +|+++.+..  .+.+..+++.|.+.|++.+|.+++
T Consensus       131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            899887753  234667788888899988776554

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.30  E-value=0.07  Score=48.04  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~  115 (331)
                      +..+|+|+|. |++|+.+.+.|.+.|.+++ ..|.+... .   +..|....++ +++... ++|+++-+.... ...+.
T Consensus        27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~~-~~Dv~vp~A~~~~I~~~~  102 (200)
T cd01075          27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYSV-DADVFAPCALGGVINDDT  102 (200)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhccc-cCCEEEecccccccCHHH
Confidence            4567899999 8999999999999999988 76765410 1   1124444433 455432 689988554432 22223


Q ss_pred             HHHHHHcCCcEEEEecCC-CChhHHHHHHHHHhccCCcEEE---ccCCCCcccC
Q 020101          116 ILEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLV---GPNCPGVIKP  165 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~vi---GPnc~Gi~~p  165 (331)
                         +.+.+.+.++-.+.+ +++.+..   +.. ++.|+.++   +-|+-|++..
T Consensus       103 ---~~~l~~~~v~~~AN~~~~~~~~~---~~L-~~~Gi~~~Pd~~~NaGGv~~~  149 (200)
T cd01075         103 ---IPQLKAKAIAGAANNQLADPRHG---QML-HERGILYAPDYVVNAGGLINV  149 (200)
T ss_pred             ---HHHcCCCEEEECCcCccCCHhHH---HHH-HHCCCEEeCceeeeCcCceee
Confidence               334467775543333 2212222   223 67888875   2355666653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.28  E-value=0.054  Score=51.77  Aligned_cols=75  Identities=17%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-------------ecC-------------cccccCHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------------HLG-------------LPVFNTVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-------------i~G-------------~p~y~sl~dl~   95 (331)
                      .+|+|||+ |.||..+...+.+.|++++ .+|+.... +.             -.|             +....++++..
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            36889998 9999999999999999876 67765410 00             012             23456787776


Q ss_pred             hcCCCCEEEEecChhh--HHHHHHHHHH
Q 020101           96 AETKANASAIYVPPPF--AAAAILEAME  121 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~--~~~~v~~~~~  121 (331)
                      +  +.|+++.++|.+.  -..++.++.+
T Consensus        81 ~--~ad~Vi~avpe~~~~k~~~~~~l~~  106 (308)
T PRK06129         81 A--DADYVQESAPENLELKRALFAELDA  106 (308)
T ss_pred             C--CCCEEEECCcCCHHHHHHHHHHHHH
Confidence            6  7999999999763  3444444433

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.25  E-value=0.091  Score=52.01  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC-CC-----c----eecCcccc-------cCHHHhhhcC--CC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-GG-----T----EHLGLPVF-------NTVAEAKAET--KA  100 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~-~g-----~----~i~G~p~y-------~sl~dl~~~~--~i  100 (331)
                      ++..+|+|+|++|.+|+.+++.|.+.|+++++.+.+.. ..     .    ...++..+       .+++++.+..  ++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            34568999999999999999999999999875543221 00     0    00122211       2344444422  48


Q ss_pred             CEEEEecCh-------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          101 NASAIYVPP-------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       101 Dlaii~vp~-------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      |+++.+..+             .....+++.|.+.|++.+|.+++
T Consensus       138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS  182 (390)
T PLN02657        138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA  182 (390)
T ss_pred             cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence            999876532             12456778888899998776665

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.23  E-value=0.087  Score=49.79  Aligned_cols=75  Identities=17%  Similarity=0.077  Sum_probs=51.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---------------------------ecCcccccCHHHh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---------------------------HLGLPVFNTVAEA   94 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---------------------------i~G~p~y~sl~dl   94 (331)
                      .+|+|+|+ |.||..++..+.+.|++++ .+|+.... +.                           ...+....++++.
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAFHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46889999 9999999999988898865 65554310 00                           0122345677776


Q ss_pred             hhcCCCCEEEEecChh--hHHHHHHHHHH
Q 020101           95 KAETKANASAIYVPPP--FAAAAILEAME  121 (331)
Q Consensus        95 ~~~~~iDlaii~vp~~--~~~~~v~~~~~  121 (331)
                      .+  +.|++|.++|.+  ...++++++.+
T Consensus        82 ~~--~aDlVieavpe~~~~k~~~~~~l~~  108 (287)
T PRK08293         82 VK--DADLVIEAVPEDPEIKGDFYEELAK  108 (287)
T ss_pred             hc--CCCEEEEeccCCHHHHHHHHHHHHh
Confidence            65  789999999955  45566666544

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.20  E-value=0.047  Score=52.98  Aligned_cols=118  Identities=11%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      ....+|+|||. |+||+...+.+.+.|..+++---+.+.. .+-.|..-|..+.|+.++ .+|+++.||.......++..
T Consensus        50 k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsiekilat  127 (480)
T KOG2380|consen   50 KATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEKILAT  127 (480)
T ss_pred             ccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHHHHHh
Confidence            35677899999 9999999999999999877332333310 124688889999998876 69999999999988888776


Q ss_pred             HHH--cCCcEEEEecCCCChhHHHHHHHHHhccCCcE----EEccCC
Q 020101          119 AME--AELDLVVCITEGIPQHDMVRVKAALNNQSKTR----LVGPNC  159 (331)
Q Consensus       119 ~~~--~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~----viGPnc  159 (331)
                      ..=  ..+..+++-..-..+-+.+.+.++.-++-+|.    +-||.+
T Consensus       128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks  174 (480)
T KOG2380|consen  128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS  174 (480)
T ss_pred             cCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc
Confidence            432  33445454333333333334444432344432    457763

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=95.12  E-value=0.7  Score=45.57  Aligned_cols=122  Identities=18%  Similarity=0.285  Sum_probs=92.0

Q ss_pred             CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHHH
Q 020101          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIK  258 (331)
Q Consensus       180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~~  258 (331)
                      .|+|+.+.-.++++++.++.....|--...|.-+|+-+. .=.+.+.++.+..||++|+|.+-+=++-.. ..-++-..+
T Consensus       255 dG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~-~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~  333 (387)
T COG0045         255 DGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGAT-AERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIA  333 (387)
T ss_pred             cCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHH
Confidence            499999999999999999999988999999999998763 444888899999999999998876542111 112233334


Q ss_pred             HhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHHH
Q 020101          259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLE  322 (331)
Q Consensus       259 a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~~~~a  322 (331)
                      +++   .++|+|+=..|...                    +.=...++++|  +..+++++|....+.+
T Consensus       334 Al~e~~~~vPlVVRL~GtN~--------------------e~Gk~iL~esg~~i~~~~~l~~aa~k~v~  382 (387)
T COG0045         334 ALKEVGVNVPLVVRLEGTNV--------------------EEGKRILAESGLNIIAADDLDEAAEKAVE  382 (387)
T ss_pred             HHHhcCCCCCEEEEcCCCCH--------------------HHHHHHHHHcCCceEecccHHHHHHHHHH
Confidence            554   67999997777544                    34468889999  7888888877665544

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.06  E-value=0.068  Score=51.09  Aligned_cols=107  Identities=16%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCccc--ccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ..+|.|+|+ |.+|+.+++.+...|.++. .+|++....   +..|...  +.++.+...  +.|++|.++|+....+-.
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~~~  227 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTKEV  227 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhHHH
Confidence            467899999 9999999999999998765 666653101   1234432  234555555  789999999975443322


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      -+....|- .++.++..-...+   + +.+ +++|+++++++
T Consensus       228 l~~~~~g~-vIIDla~~pggtd---~-~~a-~~~Gv~~~~~~  263 (296)
T PRK08306        228 LSKMPPEA-LIIDLASKPGGTD---F-EYA-EKRGIKALLAP  263 (296)
T ss_pred             HHcCCCCc-EEEEEccCCCCcC---e-eeh-hhCCeEEEEEC
Confidence            22233332 2232333111112   2 234 68899988733

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.98  E-value=0.13  Score=49.65  Aligned_cols=61  Identities=13%  Similarity=0.052  Sum_probs=48.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ...+|.|+|. |++|+.+++.+..+|.+++ .+||..  .. ... -+.+++++..  ..|++++.+|-
T Consensus       147 ~gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~--~~-~~~-~~~~l~ell~--~sDiv~l~lPl  207 (317)
T PRK06487        147 EGKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPG--RP-ARP-DRLPLDELLP--QVDALTLHCPL  207 (317)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCC--Cc-ccc-cccCHHHHHH--hCCEEEECCCC
Confidence            4567899999 9999999999999999987 677653  21 111 2458999988  78999999995

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=94.97  E-value=0.036  Score=52.42  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----------Ch---
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----------PP---  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v----------p~---  109 (331)
                      +||.|+|+||-+|+.+.+.+.+.|++++ ..+...     ..+.-...++++.++.+||++|.+.          .+   
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~-~~~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a   74 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVI-ATSRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA   74 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEE-EESTTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEE-EeCchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence            5789999999999999999999888877 445432     1222334566666655799999885          22   


Q ss_pred             -----hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 -----PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 -----~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                           .....+++.|.+.|++.+. +++
T Consensus        75 ~~iN~~~~~~la~~~~~~~~~li~-~ST  101 (286)
T PF04321_consen   75 YAINVDATKNLAEACKERGARLIH-IST  101 (286)
T ss_dssp             HHHHTHHHHHHHHHHHHCT-EEEE-EEE
T ss_pred             HHHhhHHHHHHHHHHHHcCCcEEE-eec
Confidence                 2233467788889998866 454

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.87  E-value=0.054  Score=51.23  Aligned_cols=91  Identities=11%  Similarity=0.039  Sum_probs=55.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--e------------cC-------------cccccCHHHh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--H------------LG-------------LPVFNTVAEA   94 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i------------~G-------------~p~y~sl~dl   94 (331)
                      ..+|+|||+ |.||..+...+...|++++ .+|++...-+  .            .|             +....+++++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   81 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL   81 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence            456889999 9999999999999999866 5555431000  0            12             2233456553


Q ss_pred             hhcCCCCEEEEecChhhH--HHHHHHHHHc-CCcEEEE-ecCCCChh
Q 020101           95 KAETKANASAIYVPPPFA--AAAILEAMEA-ELDLVVC-ITEGIPQH  137 (331)
Q Consensus        95 ~~~~~iDlaii~vp~~~~--~~~v~~~~~~-Gi~~ivi-~t~G~~e~  137 (331)
                       +  +.|+++.++|.+..  ..++.++.+. .-..+++ -|++++..
T Consensus        82 -~--~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s  125 (292)
T PRK07530         82 -A--DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT  125 (292)
T ss_pred             -c--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence             3  68999999987532  3444444332 1223343 45677644

>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated

Probab=94.86  E-value=0.095  Score=52.77  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCCCceecCcccccCHHHh---hhcCCCCEEEEecChhhHH---
Q 020101           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNTVAEA---KAETKANASAIYVPPPFAA---  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl---~~~~~iDlaii~vp~~~~~---  113 (331)
                      .+++|+|+ |..|..+.+.+.+   .|+++++.++...+...+.|+|++.+++++   .+++++|-++++.|.....   
T Consensus       125 rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~~  203 (442)
T TIGR03013       125 RRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPV  203 (442)
T ss_pred             CcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchHH
Confidence            45889999 7777766444433   379999888432211357889999876665   4457899999999865432   


Q ss_pred             HHHHHHHHcCCcEEE
Q 020101          114 AAILEAMEAELDLVV  128 (331)
Q Consensus       114 ~~v~~~~~~Gi~~iv  128 (331)
                      +.++.|.+.|++..+
T Consensus       204 ~~l~~~~~~gv~V~i  218 (442)
T TIGR03013       204 DELLECKLSGIEVVD  218 (442)
T ss_pred             HHHHHHHhCCCEEEE
Confidence            357788888988644

Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre

>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B

Probab=94.82  E-value=0.067  Score=45.64  Aligned_cols=85  Identities=24%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH---cCCeEEEEeCCCCC--CceecCcccccCHHHhhh---cCCCCEEEEecChh---h
Q 020101           43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKA---ETKANASAIYVPPP---F  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~---~g~~iv~~VnP~~~--g~~i~G~p~y~sl~dl~~---~~~iDlaii~vp~~---~  111 (331)
                      .+..++|. +..+..+.+.+.+   .|+++++.++++..  ++.+.|.|+..+++++++   ++++|-++++.|.+   .
T Consensus        78 ~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~  156 (175)
T PF13727_consen   78 RNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQ  156 (175)
T ss_dssp             EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHH
T ss_pred             cceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHH
Confidence            33356775 5556667777765   48999988876652  345689999987666654   46899999998764   4


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 020101          112 AAAAILEAMEAELDLVV  128 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~iv  128 (331)
                      ..+++++|-+.|++.-+
T Consensus       157 i~~ii~~~~~~~v~v~~  173 (175)
T PF13727_consen  157 IKRIIEELENHGVRVRV  173 (175)
T ss_dssp             HHHHHHHHHTTT-EEEE
T ss_pred             HHHHHHHHHhCCCEEEE
Confidence            56788889899987643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.79  E-value=0.097  Score=49.54  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=54.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------Cc---------------------ccccC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GL---------------------PVFNT   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~---------------------p~y~s   90 (331)
                      .+|+|||+ |.||..+...+...|++++ .+|++.  +.+.           ++                     ....+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~-l~d~~~--~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~   79 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGYDVT-IVDVSE--EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS   79 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCCeEE-EEeCCH--HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence            46889999 9999999999999999866 666543  1110           11                     12223


Q ss_pred             HHHhhhcCCCCEEEEecChhh--HHHHHHHHHHc-CCcEEEE-ecCCCChhHH
Q 020101           91 VAEAKAETKANASAIYVPPPF--AAAAILEAMEA-ELDLVVC-ITEGIPQHDM  139 (331)
Q Consensus        91 l~dl~~~~~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~ivi-~t~G~~e~~~  139 (331)
                      ++. .+  +.|+++.++|.+.  -.++++++.+. .-+.+++ -++|++.++.
T Consensus        80 ~~~-~~--~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~l  129 (291)
T PRK06035         80 YES-LS--DADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEI  129 (291)
T ss_pred             HHH-hC--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHH
Confidence            433 33  6899999999876  35555554432 2223332 3446654443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.78  E-value=0.3  Score=47.39  Aligned_cols=107  Identities=15%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC-C-ceecCcccccCHHHhhhcCCCCEEEEecChhhH-HHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAI  116 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~-g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~~v  116 (331)
                      .+..++.|+|. |++|+.+++.++.+|.+++ .-||... . ++..+. .|-+++++.+  +.|++++.+|...- ..++
T Consensus       144 l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~~-~y~~l~ell~--~sDii~l~~Plt~~T~hLi  218 (324)
T COG1052         144 LRGKTLGIIGL-GRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELGA-RYVDLDELLA--ESDIISLHCPLTPETRHLI  218 (324)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcCc-eeccHHHHHH--hCCEEEEeCCCChHHhhhc
Confidence            45677899999 9999999999998888877 5555431 0 122334 4555999998  79999999986433 3333


Q ss_pred             --HHHHHcCCcEEEEecCCCC-hhHHHHHHHHHhccCCcE
Q 020101          117 --LEAMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 --~~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~  153 (331)
                        +.....+-.+++ +.++-. --+...|.++. ++..+.
T Consensus       219 n~~~l~~mk~ga~l-VNtaRG~~VDe~ALi~AL-~~g~i~  256 (324)
T COG1052         219 NAEELAKMKPGAIL-VNTARGGLVDEQALIDAL-KSGKIA  256 (324)
T ss_pred             CHHHHHhCCCCeEE-EECCCccccCHHHHHHHH-HhCCcc
Confidence              334444444433 344321 12333445544 444433

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.74  E-value=0.16  Score=49.04  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      -|..+..+|+|.|++|-+|+.+++.|.+.|+++++.
T Consensus        10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~   45 (348)
T PRK15181         10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGL   45 (348)
T ss_pred             cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence            344566789999999999999999999999998744

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.72  E-value=0.11  Score=53.61  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=50.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ...+|.|+|. |++|+.+.+.+..+|++++ .+||....+  ...|+... +++++..  ..|++++++|..
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t  205 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLT  205 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCC
Confidence            3466889999 9999999999999999987 788753111  13455544 8999987  789999999974

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.67  E-value=0.062  Score=46.58  Aligned_cols=37  Identities=22%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .-+..+|+|||+ |+.|...++.|.+.|.+++ .|+|..
T Consensus        10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~   46 (157)
T PRK06719         10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEI   46 (157)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCcc
Confidence            456788999999 9999989999999999877 788875

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.60  E-value=0.2  Score=49.00  Aligned_cols=92  Identities=7%  Similarity=0.007  Sum_probs=58.0

Q ss_pred             cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee---cCcccc-------cCHHHhhhcCCCCEEEEec
Q 020101           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGLPVF-------NTVAEAKAETKANASAIYV  107 (331)
Q Consensus        38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i---~G~p~y-------~sl~dl~~~~~iDlaii~v  107 (331)
                      +..+.++|+|.|++|-+|+.+++.|.+.|+++++...... ....   .+...+       .++..+..  ++|+++-+.
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~A   93 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKN-EHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLA   93 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccc-cccccccccceEEECCCCCHHHHHHHHh--CCCEEEEcc
Confidence            3456788999999999999999999999999884432211 0000   011111       12333344  689988765


Q ss_pred             Ch-------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          108 PP-------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       108 p~-------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ..                   .....+++.|.+.+++.++.+++
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS  137 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS  137 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence            21                   02345677788889988776665

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=94.59  E-value=0.12  Score=50.37  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC---------ce-----------------ecCc--ccc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLGL--PVF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g---------~~-----------------i~G~--p~y--~sl   91 (331)
                      ++|+|.|+ ||||+.+.+.+.+. +++++++.+|...-         +.                 +.|.  +++  +++
T Consensus         3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~   81 (334)
T PRK08955          3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI   81 (334)
T ss_pred             eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence            78999999 99999999987765 68888776653210         11                 1122  222  146


Q ss_pred             HHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++++=. ++|+++.++......+.+...++.|.+.|++-++
T Consensus        82 ~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap  121 (334)
T PRK08955         82 ADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP  121 (334)
T ss_pred             hhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence            666544 8999999999999999999999999998665333

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.59  E-value=0.095  Score=42.87  Aligned_cols=74  Identities=16%  Similarity=0.107  Sum_probs=47.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeC-CCCCCcee---cC-cc--cccCH--HHhhhcCCCCEEEEecChhhHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH---LG-LP--VFNTV--AEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~Vn-P~~~g~~i---~G-~p--~y~sl--~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +++|+|++|.+|+.+++.+.+. ++++++.+. +...++..   .+ +.  .+..+  +++. ..+.|++++++|++.+.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE-ELAVDIVFLALPHGVSK   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh-hcCCCEEEEcCCcHHHH
Confidence            4788999899999999988885 888776533 32212221   11 11  11111  2222 12689999999999999


Q ss_pred             HHHHH
Q 020101          114 AAILE  118 (331)
Q Consensus       114 ~~v~~  118 (331)
                      +.+..
T Consensus        80 ~~~~~   84 (122)
T smart00859       80 EIAPL   84 (122)
T ss_pred             HHHHH
Confidence            97653

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.47  E-value=0.2  Score=45.80  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=65.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC------CC--------ceecCccccc-----CHHHhhhcCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GG--------TEHLGLPVFN-----TVAEAKAETKA  100 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~------~g--------~~i~G~p~y~-----sl~dl~~~~~i  100 (331)
                      .+..+|+|+|. |+.|+..++.|.+.|.++++..|.+.      .-        .+..++..|+     +-+++.. .++
T Consensus        21 l~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~   98 (217)
T cd05211          21 LEGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDV   98 (217)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-ccc
Confidence            35678999999 99999999999999999887765543      00        0112233332     1133333 378


Q ss_pred             CEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          101 NASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      |+++-|.+....  .-+.+.+.+++.|+-.+.+-...+..++   . +++|+.++ |..
T Consensus        99 DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~---L-~~~Gi~v~-Pd~  150 (217)
T cd05211          99 DIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRI---L-HERGIVVA-PDI  150 (217)
T ss_pred             cEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHH---H-HHCCcEEE-ChH
Confidence            999988876532  2344556678875533333212233322   2 46675554 653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06813 homoserine dehydrogenase; Validated

Probab=94.45  E-value=0.25  Score=48.34  Aligned_cols=109  Identities=16%  Similarity=0.208  Sum_probs=64.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHH--------cCC--eEEEEeCCCCCCceecCccc---------------c-c-CHHHh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIE--------YGT--KMVGGVTPKKGGTEHLGLPV---------------F-N-TVAEA   94 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~--------~g~--~iv~~VnP~~~g~~i~G~p~---------------y-~-sl~dl   94 (331)
                      .++|+|+|. |+.|+.+++.+.+        +|.  ++++..|.+..-....|++.               | . ..+++
T Consensus         2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            478999999 9999988765432        343  46655554321000112211               1 1 11222


Q ss_pred             hhc-CCCCEEEEecCh-----hhHHHHHHHHHHcCCcEEEEecCC--CChhHHHHHHHHHhccCCcEEE
Q 020101           95 KAE-TKANASAIYVPP-----PFAAAAILEAMEAELDLVVCITEG--IPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        95 ~~~-~~iDlaii~vp~-----~~~~~~v~~~~~~Gi~~ivi~t~G--~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ... .++|++|.+||.     +.+...+++++++|++.   .|+.  .--....+|.+.| +++|..+.
T Consensus        81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hV---VTANK~~la~~~~eL~~lA-~~~g~~~~  145 (346)
T PRK06813         81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDI---VAISKGALVTNWREINEAA-KIANVRIR  145 (346)
T ss_pred             hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeE---EcCCcHHHhccHHHHHHHH-HHcCCeEE
Confidence            211 258999999986     46778889999999986   2432  1112335677776 78887765

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.42  E-value=0.1  Score=49.47  Aligned_cols=103  Identities=15%  Similarity=0.241  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChh----hHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPP----FAA  113 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~----~~~  113 (331)
                      +|+|+|  .+.|+..+..+...  +|++.+...-.-...    .-.|+|.|.+.+++|+  .||++-+.+...    .-.
T Consensus         6 sVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~Gs   81 (361)
T COG4693           6 SVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQGS   81 (361)
T ss_pred             eEEEec--chHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeeecCCcH
Confidence            678888  57898877766653  788774443322101    1479999999999999  899998877543    446


Q ss_pred             HHHHHHHHcCCcEEEEecCC-CChhHHHHHHHHHhccCCcEE
Q 020101          114 AAILEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRL  154 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~v  154 (331)
                      +..+..+++||+.   +++. .-.+|..++.+.| ++.|-+.
T Consensus        82 ~larall~RGi~V---lqEHPl~p~di~~l~rlA-~rqG~~y  119 (361)
T COG4693          82 ALARALLARGIHV---LQEHPLHPRDIQDLLRLA-ERQGRRY  119 (361)
T ss_pred             HHHHHHHHcccHH---HHhCCCCHHHHHHHHHHH-HHhCcEE
Confidence            7888899999987   3443 4456777777776 6666553

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.41  E-value=0.25  Score=47.26  Aligned_cols=93  Identities=12%  Similarity=0.108  Sum_probs=57.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------Ccee---cC------cccccCHHHhhhcCCCCEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTEH---LG------LPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g~~i---~G------~p~y~sl~dl~~~~~iDlaii  105 (331)
                      ...+|+|+|+ |.+|......|.+.|.++. .+.....      |-.+   .|      .+++.+.++. .  .+|++++
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~~V~-~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vil   78 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGFDVH-FLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDM-P--PCDWVLV   78 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhc-C--CCCEEEE
Confidence            3467999999 9999999999988888755 3222110      1011   12      1223333332 2  6899999


Q ss_pred             ecChhhHHHHHHHHHHcC--CcEEEEecCCCChhH
Q 020101          106 YVPPPFAAAAILEAMEAE--LDLVVCITEGIPQHD  138 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~  138 (331)
                      +|+.....++++.+...-  -..++.++.|+..++
T Consensus        79 avK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e  113 (313)
T PRK06249         79 GLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEE  113 (313)
T ss_pred             EecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            999988887766654421  123566788986443

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.35  E-value=0.12  Score=50.50  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---------eecCc---------------------cccc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EHLGL---------------------PVFN   89 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---------~i~G~---------------------p~y~   89 (331)
                      +.+||+|+|+ |++|+.+++.+.+. +.++++..||...-+         ...|.                     +++.
T Consensus         4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~   82 (338)
T PLN02358          4 KKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG   82 (338)
T ss_pred             CceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence            4589999999 99999999987764 788887777643211         11111                     1111


Q ss_pred             --CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        90 --sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                        +.++++= +.++|+++.++......+.+...+++|.+.+++
T Consensus        83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii  125 (338)
T PLN02358         83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI  125 (338)
T ss_pred             cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe
Confidence              1223331 137999999999999999999999999988664

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.35  E-value=0.15  Score=49.01  Aligned_cols=90  Identities=20%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcc-----------------cccCHHHhhhcCCCCEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLP-----------------VFNTVAEAKAETKANAS  103 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p-----------------~y~sl~dl~~~~~iDla  103 (331)
                      .+|+|||+ |.+|......|.+.|+++. .++....-+.  ..|+.                 +..+.++ ..  +.|++
T Consensus         3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~v   77 (341)
T PRK08229          3 ARICVLGA-GSIGCYLGGRLAAAGADVT-LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA-LA--TADLV   77 (341)
T ss_pred             ceEEEECC-CHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhh-cc--CCCEE
Confidence            46889999 9999999999999898866 5554321011  11221                 1223432 23  68999


Q ss_pred             EEecChhhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 020101          104 AIYVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQH  137 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~  137 (331)
                      +++++.....++++++... .- ..++.++.|+...
T Consensus        78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            9999999988888776553 22 2344567788643

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.34  E-value=0.2  Score=49.69  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-ec-----------------CcccccC--HHHhhhcCCCCE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-HL-----------------GLPVFNT--VAEAKAETKANA  102 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i~-----------------G~p~y~s--l~dl~~~~~iDl  102 (331)
                      +|+|||. |.||......+. .|++++ ++|.+... +. ..                 +.....+  .++...  +.|+
T Consensus         2 kI~VIGl-GyvGl~~A~~lA-~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad~   76 (388)
T PRK15057          2 KITISGT-GYVGLSNGLLIA-QNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DADY   76 (388)
T ss_pred             EEEEECC-CHHHHHHHHHHH-hCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCCE
Confidence            6889999 999988886555 488877 66554310 00 11                 1112122  445444  7899


Q ss_pred             EEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCc
Q 020101          103 SAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT  152 (331)
Q Consensus       103 aii~vp~~-----------~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi  152 (331)
                      +++++|..           .+.++++...+..-..+++..+-++....+++.+.. .+.++
T Consensus        77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~-~~~~v  136 (388)
T PRK15057         77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKY-RTENI  136 (388)
T ss_pred             EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHh-hcCcE
Confidence            99999965           344455554443323344444444444444454444 34443

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=94.29  E-value=0.27  Score=50.02  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=67.4

Q ss_pred             CCcHHHHHHHHcCCeEEEEeCCCCCCc-e-e------cCcccccCHHHhhhc-CCCCEEEEecChhhH-HHHHHHHHHcC
Q 020101           54 NGTFHTEQAIEYGTKMVGGVTPKKGGT-E-H------LGLPVFNTVAEAKAE-TKANASAIYVPPPFA-AAAILEAMEAE  123 (331)
Q Consensus        54 ~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-i------~G~p~y~sl~dl~~~-~~iDlaii~vp~~~~-~~~v~~~~~~G  123 (331)
                      ||+...++|.+.||+++ +.|.+.... + .      .|+..+.|++|+.+. ..+|++++++|...+ .++++.++..-
T Consensus         1 MG~~mA~nL~~~G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence            78889999999999976 667654211 1 1      147788899998763 248999999998755 44555555432


Q ss_pred             -CcEEEEecCC-CChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          124 -LDLVVCITEG-IPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       124 -i~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                       ...+|| -.| ...++..++.+.+ ++.|+++++-.-.|
T Consensus        80 ~~GdiiI-D~gn~~~~~t~~~~~~l-~~~Gi~fvdapVSG  117 (459)
T PRK09287         80 EKGDIII-DGGNSNYKDTIRREKEL-AEKGIHFIGMGVSG  117 (459)
T ss_pred             CCCCEEE-ECCCCCHHHHHHHHHHH-HhcCCeEEecCCCC
Confidence             223333 333 2334444555555 68899988755544

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.25  E-value=0.11  Score=50.34  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCC----------C-------Cc--------ee--cCcccccC--H
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK----------G-------GT--------EH--LGLPVFNT--V   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~----------~-------g~--------~i--~G~p~y~s--l   91 (331)
                      +||+|-|. |++|+.+++.+.+.  ..++++..++..          +       ++        .+  .+++++.+  .
T Consensus         2 ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p   80 (335)
T COG0057           2 IKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP   80 (335)
T ss_pred             cEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCCh
Confidence            68999999 99999999988876  378885544211          0       00        01  24666664  3


Q ss_pred             HHhhhc-CCCCEEEEecChhhHHHHHHHHHHc-CCcEEEEecCC
Q 020101           92 AEAKAE-TKANASAIYVPPPFAAAAILEAMEA-ELDLVVCITEG  133 (331)
Q Consensus        92 ~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~-Gi~~ivi~t~G  133 (331)
                      +++|-. ..+|+++.|||.-...+..+.-+++ |+|.+++-.++
T Consensus        81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~  124 (335)
T COG0057          81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG  124 (335)
T ss_pred             HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence            455542 4689999999999988888888888 59997765554

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=94.24  E-value=0.32  Score=47.09  Aligned_cols=65  Identities=11%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHH-HcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~-~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ...+|.|||. |++|+.+.+.+. .+|.+++ ..||....+  ...|.. |.+++++.+  ..|++++.+|-.
T Consensus       144 ~gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~--~sDvv~lh~plt  211 (323)
T PRK15409        144 HHKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQ--ESDFVCIILPLT  211 (323)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHH--hCCEEEEeCCCC
Confidence            4567889999 999999999997 7898877 566653111  123443 568999998  799999999953

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=94.22  E-value=0.26  Score=48.92  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEe-CCCCCC-c-----------eec---------------Cccccc---
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG-T-----------EHL---------------GLPVFN---   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~V-nP~~~g-~-----------~i~---------------G~p~y~---   89 (331)
                      .+|+|+|++|.+|+.+++.+.++  .|++++.. +.+... .           -+.               +..++.   
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            46889999999999999888765  68887654 332210 0           011               111222   


Q ss_pred             CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEE
Q 020101           90 TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        90 sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~vi  155 (331)
                      .+.++.+..++|+++.+++......-+.+|+++|.+.+.  +..-+. .....+.+.+ +++|.+++
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL--ANKEslV~aG~~i~~~a-~~~g~~i~  145 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL--ANKESLVCAGELVMDAA-KKSGAQIL  145 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE--eCHHHHHhhHHHHHHHH-HHcCCeEE
Confidence            355555545699999999998888889999999977533  332111 1123445555 56665554

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.19  E-value=0.61  Score=45.66  Aligned_cols=124  Identities=19%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC--ce--ec----------------------Cc-ccccCH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG--TE--HL----------------------GL-PVFNTV   91 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g--~~--i~----------------------G~-p~y~sl   91 (331)
                      .+.+||.+||+ |.||+-++...... |+++++.-|.+..+  +.  ..                      |. -+-.+.
T Consensus        15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~   93 (438)
T COG4091          15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA   93 (438)
T ss_pred             CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence            57899999999 99999988887774 89988663333211  10  01                      11 112235


Q ss_pred             HHhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEec----------------------CCCChh--HHHHHHHHH
Q 020101           92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCIT----------------------EGIPQH--DMVRVKAAL  146 (331)
Q Consensus        92 ~dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t----------------------~G~~e~--~~~~l~~~a  146 (331)
                      +.+.....+|++|.+| -|+.-.++..+++++|.+.+.+--                      .+..++  -..+|.+++
T Consensus        94 ~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa  173 (438)
T COG4091          94 ELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFA  173 (438)
T ss_pred             hhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHH
Confidence            5555444699999998 467778899999999988754311                      111122  245888888


Q ss_pred             hccCCcEEEccCCCCcccCC
Q 020101          147 NNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       147 ~~~~gi~viGPnc~Gi~~p~  166 (331)
                       +..|..++--. =|..||.
T Consensus       174 -~a~G~evv~aG-KGkNnpl  191 (438)
T COG4091         174 -SALGFEVVSAG-KGKNNPL  191 (438)
T ss_pred             -HhcCCeEEecc-CCcCCCC
Confidence             78888766433 4555654

>PRK05865 hypothetical protein; Provisional

Probab=94.16  E-value=1  Score=49.28  Aligned_cols=88  Identities=18%  Similarity=0.123  Sum_probs=58.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc-------cccCHHHhhhcCCCCEEEEecCh-------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-------VFNTVAEAKAETKANASAIYVPP-------  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p-------~y~sl~dl~~~~~iDlaii~vp~-------  109 (331)
                      +|+|.|++|.+|+.+++.|.+.|+++++....... ....++.       -..+++++.+  ++|+++.+...       
T Consensus         2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~-~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~~v   78 (854)
T PRK05865          2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD-SWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRNDHI   78 (854)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh-hcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchHHH
Confidence            68899999999999999999999998754432110 0001122       1223455555  68999987643       


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          110 --PFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       110 --~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                        .....+++.|.+.|++.++.+++..
T Consensus        79 Nv~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         79 NIDGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence              2245567788888998877766653

>PRK08223 hypothetical protein; Validated

Probab=94.15  E-value=0.23  Score=47.41  Aligned_cols=118  Identities=15%  Similarity=0.051  Sum_probs=66.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|||+ |-.|..++++|...|..-+..+|......+......+-+           ..+-..+.++++=|...+.
T Consensus        26 ~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~  104 (287)
T PRK08223         26 RNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE  104 (287)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            4566889999 889999999999998764447777654222222222211           2222223355555555554


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ....+.+++.++ +...|+-.+..|+-+....+-+.| +++++.++-..+.|
T Consensus       105 ~l~~~n~~~ll~-~~DlVvD~~D~~~~~~r~~ln~~c-~~~~iP~V~~~~~g  154 (287)
T PRK08223        105 GIGKENADAFLD-GVDVYVDGLDFFEFDARRLVFAAC-QQRGIPALTAAPLG  154 (287)
T ss_pred             ccCccCHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHcCCCEEEEeccC
Confidence            444555555553 566654333333223333444555 67788766655544

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.15  E-value=1.1  Score=40.89  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceecCcccc-cCHHHhhhc-CCCCEEEEe-cChhhHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLPVF-NTVAEAKAE-TKANASAIY-VPPPFAAAAIL  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~G~p~y-~sl~dl~~~-~~iDlaii~-vp~~~~~~~v~  117 (331)
                      ++|+|+.- |+.|....+++...+|  ++++...+..   +   ++-| ..-++++.. ++.|++|-+ ..|+....+.+
T Consensus         2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~---~~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L~e   74 (224)
T COG1810           2 MKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---E---LPDFIEEPEDLLPKLPEADIVVAYGLHPDLLLALPE   74 (224)
T ss_pred             cEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---c---ccchhhCHHHhcCCCCCCCEEEEeccCccHHHHHHH
Confidence            57888887 8999999999887665  3665544411   1   1222 123333322 468999966 78999999999


Q ss_pred             HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      .+.+.|++.+|+ ..+-++--..+|.+.+ .+.|+.+.-|.-+--+.|.
T Consensus        75 ~~~~~~~~alIv-p~~~~~g~rkqL~~~~-~~~g~e~~~p~p~C~Le~~  121 (224)
T COG1810          75 KAAEGGVKALIV-PAEPPEGLRKQLKEFC-EELGVEFEAPEPFCSLEPN  121 (224)
T ss_pred             HHHhCCccEEEE-ecCCChhHHHHHHHHh-hhcceeeecCCccccCCCC
Confidence            999999999775 3333333345677776 7888888877765544443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.12  E-value=0.12  Score=43.52  Aligned_cols=91  Identities=12%  Similarity=0.146  Sum_probs=57.8

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCc-------------ccccCHHHhhhcCCCCEEEEecCh
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGL-------------PVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~-------------p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |+|+|+ |.+|....-.|.+.|.++.....++.. +.  ..|+             +.+..-.. ....++|++++++..
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPRL-EAIKEQGLTITGPDGDETVQPPIVISAPS-ADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHHH-HHHHHHCEEEEETTEEEEEEEEEEESSHG-HHHSTESEEEE-SSG
T ss_pred             CEEECc-CHHHHHHHHHHHHCCCceEEEEccccH-HhhhheeEEEEecccceecccccccCcch-hccCCCcEEEEEecc
Confidence            578999 999999998888888886633333310 11  0111             11111111 112379999999999


Q ss_pred             hhHHHHHHHHHHcCCc--EEEEecCCCChhH
Q 020101          110 PFAAAAILEAMEAELD--LVVCITEGIPQHD  138 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~--~ivi~t~G~~e~~  138 (331)
                      ....++++.+...--+  .++.++.|+..++
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~  108 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNEE  108 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred             cchHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence            9999999886654433  5788999986543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.10  E-value=0.06  Score=46.52  Aligned_cols=88  Identities=15%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce--------------------------ecCcc--cc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE--------------------------HLGLP--VF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~--------------------------i~G~p--~y--~sl   91 (331)
                      +||+|-|. |++|+.+++.+.. ..+++++.-||...-+.                          +.|.+  ++  .+.
T Consensus         1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp   79 (151)
T PF00044_consen    1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP   79 (151)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred             CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence            58999999 9999999998875 47899976666621010                          22322  11  234


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      +++|= +.++|+++.||+.-...+..+.-+++|+|.+++-+
T Consensus        80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisa  120 (151)
T PF00044_consen   80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISA  120 (151)
T ss_dssp             GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESS
T ss_pred             cccccccccccEEEeccccceecccccccccccccceeecc
Confidence            45542 24789999999999888888999999999977533

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.09  E-value=0.34  Score=44.07  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-----eecCcccc-cCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVF-NTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-----~i~G~p~y-~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ++++|+|+ |++|..+.+.+...|++++-+ +.+....     +..+..+- .+.+|..+  ..|++++++|-+..++++
T Consensus         2 ~~~~i~Gt-GniG~alA~~~a~ag~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~   77 (211)
T COG2085           2 MIIAIIGT-GNIGSALALRLAKAGHEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVL   77 (211)
T ss_pred             cEEEEecc-ChHHHHHHHHHHhCCCeEEEe-cCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHH
Confidence            34667777 999999999999999997633 2222101     12222222 24666665  689999999999999999


Q ss_pred             HHHHH-cCCcE
Q 020101          117 LEAME-AELDL  126 (331)
Q Consensus       117 ~~~~~-~Gi~~  126 (331)
                      .+..+ .+=|.
T Consensus        78 ~~l~~~~~~KI   88 (211)
T COG2085          78 AELRDALGGKI   88 (211)
T ss_pred             HHHHHHhCCeE
Confidence            99886 44243

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=94.05  E-value=0.16  Score=49.44  Aligned_cols=89  Identities=12%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCC---------------C---------CCCce--ecCc--cccc-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTP---------------K---------KGGTE--HLGL--PVFN-   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP---------------~---------~~g~~--i~G~--p~y~-   89 (331)
                      ++|+|+|+ |++|+.+++.+.+.    .++++ .||.               .         ..|+.  +.|.  +++. 
T Consensus         2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~   79 (336)
T PRK13535          2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE   79 (336)
T ss_pred             eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence            57999999 99999999998874    35566 4442               0         01111  2343  3332 


Q ss_pred             -CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101           90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus        90 -sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                       ++++++= +.++|+++.++......+.+...+++|.+.+++ +.-+
T Consensus        80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i-Sap~  125 (336)
T PRK13535         80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF-SHPG  125 (336)
T ss_pred             CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe-cCCc
Confidence             5666653 248999999999999999999999999998664 5434

>PLN02235 ATP citrate (pro-S)-lyase

Probab=94.04  E-value=0.43  Score=47.84  Aligned_cols=127  Identities=18%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCC--CCceEEEecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEccCCCcHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVG--LGQSTCVGIGGDPFNGTNFVDCVTKFI----ADPQTEGIILIGEIGGTAEED  252 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~~~~~v~~~d~l~~l~----~Dp~T~~I~ly~E~~g~~~~~  252 (331)
                      ..|+|+.+.--++++.+.++.....|  --...|.-+|+.+ +.-...+.++-+.    .||++++|++-+=++=.+-.+
T Consensus       268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~  346 (423)
T PLN02235        268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD  346 (423)
T ss_pred             CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence            45999999999999999999998888  4578899999875 2455556666555    799999997776432111112


Q ss_pred             -H---HHHHHHhC--------CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHH
Q 020101          253 -A---AALIKESG--------TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGA  318 (331)
Q Consensus       253 -~---~~f~~a~r--------~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--v~~v~~~~el~~  318 (331)
                       +   +-.+++++        .++||||=..|.....|.                ..++.++++.|  +...+.-..|.+
T Consensus       347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~----------------~il~e~~~~~gl~i~~~~~~~~m~~  410 (423)
T PLN02235        347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGL----------------AKMRALGEEIGVPIEVYGPEATMTG  410 (423)
T ss_pred             hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHH----------------HHHHHhHHhcCCcEEEeCCCCCHHH
Confidence             2   23445554        367998877776554122                45566677999  566662224555


Q ss_pred             HHHH
Q 020101          319 AMLE  322 (331)
Q Consensus       319 ~~~a  322 (331)
                      +++.
T Consensus       411 a~~~  414 (423)
T PLN02235        411 ICKQ  414 (423)
T ss_pred             HHHH
Confidence            5543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.03  E-value=0.12  Score=43.12  Aligned_cols=113  Identities=14%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCc-cccc----------CHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFN----------TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~-p~y~----------sl~dl~~~~~iDlaii~vp~  109 (331)
                      |..+|+|+|+ |..|..++++|...|..-+..+|+.....+..+. +.|.          .+.+...+.+|++=+...+.
T Consensus         1 r~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    1 RNKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             HT-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            3568999999 8899999999999888533377776542222221 1221          13333333356666666666


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      ....+..++.. .+...++..+.-  .+....+.+.+ +++++.+|--+
T Consensus        80 ~~~~~~~~~~~-~~~d~vi~~~d~--~~~~~~l~~~~-~~~~~p~i~~~  124 (135)
T PF00899_consen   80 KIDEENIEELL-KDYDIVIDCVDS--LAARLLLNEIC-REYGIPFIDAG  124 (135)
T ss_dssp             HCSHHHHHHHH-HTSSEEEEESSS--HHHHHHHHHHH-HHTT-EEEEEE
T ss_pred             ccccccccccc-cCCCEEEEecCC--HHHHHHHHHHH-HHcCCCEEEEE
Confidence            66556666666 467765543322  23334556666 78888876444

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.96  E-value=0.2  Score=50.03  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH-HH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-IL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~-v~  117 (331)
                      ...+|+|+|+ |+.|+.+++.++..|.+++. -+||...- ..-.|..+. +++++..  ..|++|.++......+. ..
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~  269 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHF  269 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHH
Confidence            4567899999 99999999999999998652 24664310 012455443 4677665  78999998876555442 33


Q ss_pred             HHHHcCCcEEEEecCCCC-hhHHHHHHHHH
Q 020101          118 EAMEAELDLVVCITEGIP-QHDMVRVKAAL  146 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a  146 (331)
                      .+.+.|.  +++....+. |-+...|.+.+
T Consensus       270 ~~mK~Ga--iliN~G~~~~eId~~aL~~~~  297 (406)
T TIGR00936       270 ENMKDGA--IVANIGHFDVEIDVKALEELA  297 (406)
T ss_pred             hcCCCCc--EEEEECCCCceeCHHHHHHHH
Confidence            3334443  333333333 33445555443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.86  E-value=1.3  Score=41.07  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT   74 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g--~~iv~~Vn   74 (331)
                      +|+|.|++|.+|+.+++.|.+.|  ++++ .++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~-~~~   32 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLD   32 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEE-Eec
Confidence            47889999999999999988765  6776 444

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.85  E-value=0.55  Score=43.63  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCC--CCCCcHHHHHHHHcCCeEEEEeCCCCC-Cc-----------eecCcccccCHHHhhhcCCCCEEEEe
Q 020101           41 KNTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKG-GT-----------EHLGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        41 k~~~VaIvGas--gk~G~~~~~~l~~~g~~iv~~VnP~~~-g~-----------~i~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      .+++|++|.-+  ||+| .+++.++++|++-...|||+.. .+           -+.+.++|+|+++...  ++|+++-+
T Consensus         3 ~~i~iVLVep~~~gNIG-~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~v~aT   79 (242)
T COG0565           3 ENIRIVLVEPSHPGNIG-SVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDLVVAT   79 (242)
T ss_pred             CccEEEEEcCCCCccHH-HHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCEEEEe
Confidence            35788888763  5666 4789999999974459999873 11           1568899999999998  78888866


Q ss_pred             c
Q 020101          107 V  107 (331)
Q Consensus       107 v  107 (331)
                      +
T Consensus        80 t   80 (242)
T COG0565          80 T   80 (242)
T ss_pred             c
Confidence            5

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.84  E-value=0.23  Score=51.76  Aligned_cols=88  Identities=17%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCcee-----------cC------cccc-------cCHHHhhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH-----------LG------LPVF-------NTVAEAKA   96 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~i-----------~G------~p~y-------~sl~dl~~   96 (331)
                      ...|+|.|++|.+|+.+++.|.+.|+++++.+ |+... ...           .|      +.++       .++++...
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg  158 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG  158 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence            34578899999999999999999999977443 22110 000           01      1111       12333333


Q ss_pred             cCCCCEEEEecChh----------------hHHHHHHHHHHcCCcEEEEecC
Q 020101           97 ETKANASAIYVPPP----------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        97 ~~~iDlaii~vp~~----------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        ++|++|.+....                ....+++.|.+.|++.+|++++
T Consensus       159 --giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS  208 (576)
T PLN03209        159 --NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS  208 (576)
T ss_pred             --CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence              689888765321                2445667777788888777776

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.82  E-value=0.35  Score=48.66  Aligned_cols=68  Identities=24%  Similarity=0.281  Sum_probs=43.1

Q ss_pred             cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-ecCcc----------------cccCHHHhhhcCC
Q 020101           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-HLGLP----------------VFNTVAEAKAETK   99 (331)
Q Consensus        38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i~G~p----------------~y~sl~dl~~~~~   99 (331)
                      |.-+.++|+|||. |.||.....++.+ +++++ ++|.+... +. ..|..                .+.+-.+..+  +
T Consensus         2 ~~~~~mkI~vIGl-GyvGlpmA~~la~-~~~V~-g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~   76 (425)
T PRK15182          2 FGIDEVKIAIIGL-GYVGLPLAVEFGK-SRQVV-GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--E   76 (425)
T ss_pred             CCCCCCeEEEECc-CcchHHHHHHHhc-CCEEE-EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--C
Confidence            4344578999999 9999888888766 68877 55554310 11 12221                2333223344  6


Q ss_pred             CCEEEEecChh
Q 020101          100 ANASAIYVPPP  110 (331)
Q Consensus       100 iDlaii~vp~~  110 (331)
                      .|++++++|..
T Consensus        77 advvii~Vptp   87 (425)
T PRK15182         77 CNFYIITVPTP   87 (425)
T ss_pred             CCEEEEEcCCC
Confidence            89999999965

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=93.78  E-value=0.25  Score=45.08  Aligned_cols=87  Identities=18%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCCCCCCC-C--------CCCcccc
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTAPPGRR-M--------GHAGAIV  288 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvv~k~Grs~~~g~~-~--------sHtga~a  288 (331)
                      ++.+.|+.+.+||++++|++.+++.|-...+..++.+++   | .+||||++-.|-+.. +.- +        ..++.+.
T Consensus        33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~sg-gy~lasaad~I~a~p~~~vg  111 (222)
T cd07018          33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQG-QYYLASAADEIYLNPSGSVE  111 (222)
T ss_pred             HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCch-hhhhhhhCCEEEECCCceEE
Confidence            355666678889999999999998765566666665555   3 689999997763332 221 1        2223322


Q ss_pred             cCC-CCCHHHHHHHHHHcCCeE
Q 020101          289 SGG-KGTAQDKIKTLREAGVTV  309 (331)
Q Consensus       289 ~~~-~g~~~~~~a~~~~aGv~~  309 (331)
                      +.+ .....-+..++++.||-.
T Consensus       112 ~iGv~~~~~~~~~ll~klGv~~  133 (222)
T cd07018         112 LTGLSAETLFFKGLLDKLGVEV  133 (222)
T ss_pred             eeccchhhhhHHHHHHHcCCcE
Confidence            110 012334678899999864

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=93.65  E-value=0.57  Score=45.61  Aligned_cols=109  Identities=18%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc--------C--CeEEEEeCCCCCCc-eecCcc---cccCH-----HHhhhcCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY--------G--TKMVGGVTPKKGGT-EHLGLP---VFNTV-----AEAKAETKAN  101 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~--------g--~~iv~~VnP~~~g~-~i~G~p---~y~sl-----~dl~~~~~iD  101 (331)
                      +.++|+|+|. |..|+.+++.+.+.        |  +++++..+.+..-. ...+.+   ...+.     .++.....+|
T Consensus         2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (333)
T COG0460           2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID   80 (333)
T ss_pred             ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence            5789999999 99999988766542        3  45666666543111 122222   11234     4444445788


Q ss_pred             EEEEecCh--hhH--HHHHHHHHHcCCcEEEEecCC---CChhHHHHHHHHHhccCCcEEE
Q 020101          102 ASAIYVPP--PFA--AAAILEAMEAELDLVVCITEG---IPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       102 laii~vp~--~~~--~~~v~~~~~~Gi~~ivi~t~G---~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      +++-.++.  +..  .+.+.+++++|.+.   .|+.   ++. .-.+|.+.| +++|..+.
T Consensus        81 vvve~~~~d~~~~~~~~~~~~al~~GkhV---VTaNK~~lA~-~~~el~~~A-~~~g~~l~  136 (333)
T COG0460          81 VVVELVGGDVEPAEPADLYLKALENGKHV---VTANKALLAL-HYHELREAA-EKNGVKLL  136 (333)
T ss_pred             EEEecCcccCCchhhHHHHHHHHHcCCeE---ECCCchHhHh-hHHHHHHHH-HHhCCeEE
Confidence            88876665  333  48899999999886   3542   222 244677776 67775544

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.58  E-value=0.29  Score=46.66  Aligned_cols=115  Identities=15%  Similarity=0.241  Sum_probs=72.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHh-----------hhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA-----------KAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl-----------~~~~~iDlaii~vp~  109 (331)
                      ++.+|.|+|+ |-.|..++++|...|..-+..+|+.....+..+...|-+-+|+           ..+.++++-|.....
T Consensus        18 ~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~   96 (286)
T cd01491          18 QKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG   96 (286)
T ss_pred             hcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence            4567899999 7899999999999998755588887643333343333222222           223456666655443


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      ....+.+     .+... |+.+.. +.+....+.++| +++++.++--++.|++-
T Consensus        97 ~~~~~~l-----~~fdv-VV~~~~-~~~~~~~in~~c-~~~~ipfI~a~~~G~~G  143 (286)
T cd01491          97 PLTTDEL-----LKFQV-VVLTDA-SLEDQLKINEFC-HSPGIKFISADTRGLFG  143 (286)
T ss_pred             cCCHHHH-----hcCCE-EEEecC-CHHHHHHHHHHH-HHcCCEEEEEeccccEE
Confidence            3222222     23455 444443 555556777887 78999999888888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.51  E-value=0.23  Score=45.51  Aligned_cols=85  Identities=19%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----ecCcccc---cC----HHHhhhcCCCCEEEEecChh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGLPVF---NT----VAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----i~G~p~y---~s----l~dl~~~~~iDlaii~vp~~  110 (331)
                      ++++|+|+ |+.|+.+++.|.+.|++++ .|+..... .+    ..+..++   .+    |+++.- .+.|+++.+|..+
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv-~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi-~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVV-LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI-DDADAVVAATGND   77 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceE-EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC-CcCCEEEEeeCCC
Confidence            36889999 9999999999999999977 55443310 11    1222222   22    445422 3789999999986


Q ss_pred             hHHHHHHHHH-H-cCCcEEEEe
Q 020101          111 FAAAAILEAM-E-AELDLVVCI  130 (331)
Q Consensus       111 ~~~~~v~~~~-~-~Gi~~ivi~  130 (331)
                      ..--++-.+. + .|++.+|.-
T Consensus        78 ~~N~i~~~la~~~~gv~~viar   99 (225)
T COG0569          78 EVNSVLALLALKEFGVPRVIAR   99 (225)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEE
Confidence            6555444433 3 689997753

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.50  E-value=0.47  Score=42.62  Aligned_cols=117  Identities=14%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +.+|.|+|+ |..|..++++|...|..-+..+|+.....+..+...+-           .+.+-..+.+||+-+-+.+..
T Consensus        21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~   99 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD   99 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence            456888999 66999999999999987445888876422222222111           122223334677766554432


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      .. +...+.. .+...++ .+.. +.+....+.+.| +++++.++-..+.|+.-
T Consensus       100 ~~-~~~~~~~-~~~dvVi-~~~~-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~G  148 (197)
T cd01492         100 IS-EKPEEFF-SQFDVVV-ATEL-SRAELVKINELC-RKLGVKFYATGVHGLFG  148 (197)
T ss_pred             cc-ccHHHHH-hCCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEEecCCEE
Confidence            22 2222222 4566644 3433 344455666777 78898888777766543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.50  E-value=0.24  Score=44.65  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .-+..+|+|||+ |++|...++.|.+.|.+++ .|+|..
T Consensus         7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~   43 (202)
T PRK06718          7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPEL   43 (202)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence            446678999999 9999999999999998877 888864

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.48  E-value=0.3  Score=45.87  Aligned_cols=84  Identities=18%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCce---ecCcccc------cCHHHhhhcCCCCEEEEecChhh--
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTE---HLGLPVF------NTVAEAKAETKANASAIYVPPPF--  111 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~---i~G~p~y------~sl~dl~~~~~iDlaii~vp~~~--  111 (331)
                      +|.|.|+|+- |+.+.+.|.+.|+++++-+ .+.. .+.   ..+.+++      .++.++..++++|++|+++.|-+  
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~-~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~   79 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEG-KHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQ   79 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCc-cccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHH
Confidence            6889999775 9999999998899876543 3322 111   1123333      24656666668999999998844  


Q ss_pred             -HHHHHHHHHHcCCcEEEE
Q 020101          112 -AAAAILEAMEAELDLVVC  129 (331)
Q Consensus       112 -~~~~v~~~~~~Gi~~ivi  129 (331)
                       ...+.+.|.+.|++.+=.
T Consensus        80 is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        80 ITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             HHHHHHHHHHHhCCcEEEE
Confidence             466778888999988543

This enzyme was found to be a monomer by gel filtration.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=93.45  E-value=0.14  Score=49.15  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=52.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCccc--ccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +..+|+|+|+ |.+|+.+++.+...|...+..+|+.... .+   ..|...  +.++.+...  +.|+++.+||.....+
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~~~  253 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHYAK  253 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCchHH
Confidence            4677999999 9999999999988776544478876521 11   123322  223444444  6899999999877755


Q ss_pred             HHHHHHHc
Q 020101          115 AILEAMEA  122 (331)
Q Consensus       115 ~v~~~~~~  122 (331)
                      .+..+.+.
T Consensus       254 ~~~~~~~~  261 (311)
T cd05213         254 IVERAMKK  261 (311)
T ss_pred             HHHHHHhh
Confidence            55655543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.42  E-value=0.18  Score=48.79  Aligned_cols=66  Identities=21%  Similarity=0.209  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----------------------ecCcccccCHHHhhhcCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----------------------HLGLPVFNTVAEAKAETK   99 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----------------------i~G~p~y~sl~dl~~~~~   99 (331)
                      .+|+|||+ |.||..++..+...|++++ .+|+.....+                       ...+....++++...  +
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~--~   83 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA--D   83 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc--C
Confidence            56889999 9999999999999999976 6666431000                       011233457777766  7


Q ss_pred             CCEEEEecChhhH
Q 020101          100 ANASAIYVPPPFA  112 (331)
Q Consensus       100 iDlaii~vp~~~~  112 (331)
                      .|+++-++|.+..
T Consensus        84 aDlViEavpE~l~   96 (321)
T PRK07066         84 ADFIQESAPEREA   96 (321)
T ss_pred             CCEEEECCcCCHH
Confidence            9999999996653

>PLN02214 cinnamoyl-CoA reductase

Probab=93.42  E-value=0.53  Score=45.45  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=56.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCC-----------cee----cCcccccCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-----------TEH----LGLPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g-----------~~i----~G~p~y~sl~dl~~~~~iDlai  104 (331)
                      +..+|+|.|++|-+|+.+++.|.+.|+++++.+. +....           ..+    ..+.-..+++++..  .+|+++
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi   86 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF   86 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence            4567899999999999999999999999775432 21100           000    01111223455555  689888


Q ss_pred             EecCh-----h--------hHHHHHHHHHHcCCcEEEEecC
Q 020101          105 IYVPP-----P--------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       105 i~vp~-----~--------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      -+..+     +        ....+++.|.+.|++.+|..++
T Consensus        87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS  127 (342)
T PLN02214         87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS  127 (342)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            66532     1        2445677888889987776554

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=93.31  E-value=7.2  Score=38.25  Aligned_cols=210  Identities=18%  Similarity=0.190  Sum_probs=121.8

Q ss_pred             cccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCcc
Q 020101           87 VFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVI  163 (331)
Q Consensus        87 ~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~  163 (331)
                      .|..+..+.++ ....-+|-++...+++.+.-.|-..|++..|++..+.+..-...+     |.+|  +.+.|.|.-==.
T Consensus        60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~-----r~~GaeVil~g~~~dda~  134 (347)
T COG1171          60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDAT-----RGYGAEVILHGDNFDDAY  134 (347)
T ss_pred             HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHH-----HhcCCEEEEECCCHHHHH
Confidence            45556666532 245667777778888999999999999999998887764332222     3344  445555431000


Q ss_pred             cCC-----CcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhc-CCCcc
Q 020101          164 KPG-----ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA-DPQTE  237 (331)
Q Consensus       164 ~p~-----~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~-Dp~T~  237 (331)
                      ...     .-...|.|.    --+--+|.--|+++.++++...+.  -=.-++.+|+--   + ++-+..|+.. .|+||
T Consensus       135 ~~a~~~a~~~G~~~i~p----fD~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGG---L-isGia~~~k~~~p~~~  204 (347)
T COG1171         135 AAAEELAEEEGLTFVPP----FDDPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGG---L-ISGIATALKALSPEIK  204 (347)
T ss_pred             HHHHHHHHHcCCEEeCC----CCCcceeecccHHHHHHHHhcccc--CCEEEEecCccH---H-HHHHHHHHHHhCCCCe
Confidence            000     000112221    123457777899999998776533  123477888752   1 2233334433 57799


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEE-eCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHH
Q 020101          238 GIILIGEIGGTAEEDAAALIKESGTEKPIVAFI-AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI  316 (331)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k-~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el  316 (331)
                      +|.+--|.       +..+.++++.+++++.+. .++-.. |.+..+-|.+         .|+-+-+-..=++.=|-+|+
T Consensus       205 vIGVEp~~-------a~~~~~Sl~~G~~~~~~~~~~tiaD-G~av~~~g~~---------tf~i~~~~vd~~v~V~e~ei  267 (347)
T COG1171         205 VIGVEPEG-------APSMYASLKAGKIVVVLPDVGTIAD-GLAVKRPGDL---------TFEILRELVDDIVLVDEDEI  267 (347)
T ss_pred             EEEEeeCC-------ChHHHHHHHcCCceeecCCCCcccc-ccccCCCCHH---------HHHHHHHcCCcEEEECHHHH
Confidence            99887775       345677777787777776 665555 5543343333         34333333333444455788


Q ss_pred             HHHHHHHHHhcC
Q 020101          317 GAAMLEVFKQRG  328 (331)
Q Consensus       317 ~~~~~a~~~~~~  328 (331)
                      ..+.+.+++..+
T Consensus       268 ~~am~~l~~~~~  279 (347)
T COG1171         268 CAAMRDLFERTK  279 (347)
T ss_pred             HHHHHHHHhcCC
Confidence            888888777543

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=93.08  E-value=0.15  Score=49.45  Aligned_cols=186  Identities=15%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc--CC---e-EE--EE---------------eCC-----CCC-C-ceecCccccc
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY--GT---K-MV--GG---------------VTP-----KKG-G-TEHLGLPVFN   89 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~--g~---~-iv--~~---------------VnP-----~~~-g-~~i~G~p~y~   89 (331)
                      .++++|+|||. |++|+.+.+.+.+.  .+   + .|  +.               +|-     ++- | +--..+.+.+
T Consensus        19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            34588999998 99999988765542  12   1 11  01               111     110 0 0012344556


Q ss_pred             CHHHhhhcCCCCEEEEecChhhHHHHHHHHHH---cCCcEEEEecCCCCh--hH--HHHHHHHHhccCCcE---EEccCC
Q 020101           90 TVAEAKAETKANASAIYVPPPFAAAAILEAME---AELDLVVCITEGIPQ--HD--MVRVKAALNNQSKTR---LVGPNC  159 (331)
Q Consensus        90 sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~---~Gi~~ivi~t~G~~e--~~--~~~l~~~a~~~~gi~---viGPnc  159 (331)
                      ++.+...  +.|++|..+|.+....+++++..   .++.. |-++-||.-  +.  ..-+-+...++.|+.   +.|||-
T Consensus        98 dl~ea~~--dADilvf~vPhQf~~~ic~~l~g~vk~~~~a-ISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNi  174 (372)
T KOG2711|consen   98 DLVEAAK--DADILVFVVPHQFIPRICEQLKGYVKPGATA-ISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANI  174 (372)
T ss_pred             hHHHHhc--cCCEEEEeCChhhHHHHHHHHhcccCCCCeE-EEeecceeccCCCCceeehHHHHHHHhCCCceeecCCch
Confidence            7777766  78999999999999999888764   46666 335668752  22  222223333556654   678884


Q ss_pred             CC-cccCC--CcccccCCCC--------CCCCCCEEEEecChHHHHHHHHHHH---hCCCCceEEEecCCCC---CCCCC
Q 020101          160 PG-VIKPG--ECKIGIMPGY--------IHKPGRIGIVSRSGTLTYEAVFQTT---AVGLGQSTCVGIGGDP---FNGTN  222 (331)
Q Consensus       160 ~G-i~~p~--~~~~~~~~~~--------~~~~G~valisQSG~~~~~~~~~~~---~~g~g~s~~vs~Gn~~---~~~v~  222 (331)
                      -. +.+-.  ...++..+..        .++.=+.-+.-++-.-+.++...++   .-+.||.--...||..   ..-.+
T Consensus       175 A~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~G  254 (372)
T KOG2711|consen  175 ASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLG  254 (372)
T ss_pred             HHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhh
Confidence            32 11111  1112222110        0222234455555555545543332   3467888888888752   22445


Q ss_pred             HHHHHHH
Q 020101          223 FVDCVTK  229 (331)
Q Consensus       223 ~~d~l~~  229 (331)
                      +.|++.|
T Consensus       255 l~Em~~F  261 (372)
T KOG2711|consen  255 LLEMIKF  261 (372)
T ss_pred             HHHHHHH
Confidence            5565554

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.07  E-value=0.37  Score=44.65  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh-------------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-------------  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-------------  110 (331)
                      +|+|+|++|-+|+.+++.|.+.|++++ .++...     ..+.-..++.++.+..++|+++.+....             
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~-~~~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~   74 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVV-ALTSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF   74 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEE-EeCCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence            478899999999999999999999977 444321     1122233455555544579998766321             


Q ss_pred             -----hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 -----FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 -----~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                           ....+++.|.+.+.+. +.+++
T Consensus        75 ~~n~~~~~~l~~~~~~~~~~~-v~~Ss  100 (287)
T TIGR01214        75 AVNALAPQNLARAAARHGARL-VHIST  100 (287)
T ss_pred             HHHHHHHHHHHHHHHHcCCeE-EEEee
Confidence                 1344555666677654 44454

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.07  E-value=0.51  Score=46.06  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-------------HHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-------------VAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-------------l~dl~~~~~iDlaii~v  107 (331)
                      +..+|+|||+ |..|..++++|...|..-+..||+.....+..+...+-+             ..+-..+.++++-|...
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            3456899999 889999999999999854448888763222222221111             11222223456655555


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      +.+...+.++++++ +...++..+..+  +....+.+.| +++++.+|--.+.|
T Consensus       102 ~~~~~~~~~~~~~~-~~DlVid~~D~~--~~r~~in~~~-~~~~ip~i~~~~~g  151 (338)
T PRK12475        102 VTDVTVEELEELVK-EVDLIIDATDNF--DTRLLINDLS-QKYNIPWIYGGCVG  151 (338)
T ss_pred             eccCCHHHHHHHhc-CCCEEEEcCCCH--HHHHHHHHHH-HHcCCCEEEEEecc
Confidence            54444455555543 567666544333  2222344555 67787766544544

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=93.04  E-value=0.68  Score=42.42  Aligned_cols=109  Identities=17%  Similarity=0.064  Sum_probs=69.3

Q ss_pred             CCCCCcHHHHHHHHc-CCe-EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEE-ecChhhHHHHHHHHHHcCCcEE
Q 020101           51 TGKNGTFHTEQAIEY-GTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI-YVPPPFAAAAILEAMEAELDLV  127 (331)
Q Consensus        51 sgk~G~~~~~~l~~~-g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii-~vp~~~~~~~v~~~~~~Gi~~i  127 (331)
                      +|+.|...++++.++ ++. .+..++....-++....| ..-+.+++   +.|++|. ...|+...++++.|.+.|++.+
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~~l~efId~p-ee~Lp~i~---~~Dl~I~y~lHPDl~~~l~~~~~e~g~kav   80 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPEDLPEFIDDP-EEYLPKIP---EADLLIAYGLHPDLTYELPEIAKEAGVKAV   80 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCccccccccCh-HHHccCCC---CCCEEEEeccCchhHHHHHHHHHHcCCCEE
Confidence            377899999999886 555 333444322111211111 11122333   5899996 6699999999999999999997


Q ss_pred             EEecCCCCh-hHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101          128 VCITEGIPQ-HDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (331)
Q Consensus       128 vi~t~G~~e-~~~~~l~~~a~~~~gi~viGPnc~Gi~~p  165 (331)
                      |+ ....+. .-..++.+.+ ++.|+.+.-|.-+--+.+
T Consensus        81 Iv-p~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~CsL~~  117 (217)
T PF02593_consen   81 IV-PSESPKPGLRRQLKKQL-EEFGIEVEFPKPFCSLEE  117 (217)
T ss_pred             EE-ecCCCccchHHHHHHHH-HhcCceeecCccccccCC
Confidence            65 333333 2234566666 789999999986654444

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=92.97  E-value=0.66  Score=50.47  Aligned_cols=119  Identities=14%  Similarity=0.097  Sum_probs=70.7

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH--------cCC--eEEEEeCCCCCCceecCcc------------cccCHHHh--
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE--------YGT--KMVGGVTPKKGGTEHLGLP------------VFNTVAEA--   94 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~--------~g~--~iv~~VnP~~~g~~i~G~p------------~y~sl~dl--   94 (331)
                      ..+.++|+|+|. |+.|+.+++.+.+        +|.  ++++..|-+..--...|+.            ...+++.+  
T Consensus       455 ~~~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e  533 (810)
T PRK09466        455 AEKRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFL  533 (810)
T ss_pred             cCceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHH
Confidence            557899999999 9999988765432        354  4666555332100011111            11122222  


Q ss_pred             -hhcC--CCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC----ChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101           95 -KAET--KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI----PQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus        95 -~~~~--~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~----~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                       ....  ..+++|.+++.+.......+++++|++. | -+..-    +.+...+|.+.+ +++|..+.=--+.|
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~V-V-taNK~~~a~~~~~~~~l~~~a-~~~~~~~~yEasV~  604 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHV-I-SANKLAGSSPSNFYRQIKDAF-AKTGRHWLYNATVG  604 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEE-E-cCCcccccccHHHHHHHHHHH-HHcCCeEEEeceee
Confidence             2111  2369999999988888888999999986 2 22221    224556777777 78887766333333

>PRK09414 glutamate dehydrogenase; Provisional

Probab=92.90  E-value=0.62  Score=47.17  Aligned_cols=112  Identities=11%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-------CCCCC-ceec--------Cccccc--------CHHHhh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-------PKKGG-TEHL--------GLPVFN--------TVAEAK   95 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-------P~~~g-~~i~--------G~p~y~--------sl~dl~   95 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.-|       |+..- +++.        .+.-|+        +-+++.
T Consensus       230 l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~  308 (445)
T PRK09414        230 FEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW  308 (445)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence            46788999999 99999999999999999986534       43210 0000        111121        222222


Q ss_pred             hcCCCCEEEEecChh-hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101           96 AETKANASAIYVPPP-FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus        96 ~~~~iDlaii~vp~~-~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                       +.++|+++=|.... ...+.+....+.+.|.|+=.+-|....+..++   . +++||.++ |+
T Consensus       309 -~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~---L-~~rGI~~v-PD  366 (445)
T PRK09414        309 -SVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEV---F-LEAGVLFA-PG  366 (445)
T ss_pred             -ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHH---H-HHCCcEEE-Cc
Confidence             24689998776543 34556666666688875533334332223222   2 56787776 65

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=92.89  E-value=0.26  Score=42.28  Aligned_cols=53  Identities=19%  Similarity=0.329  Sum_probs=42.1

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~  275 (331)
                      +.+.|+.+.+|++++.|++++.+.|.....+.++.++++ .+|||+++--|...
T Consensus        16 l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~   69 (161)
T cd00394          16 LAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAA   69 (161)
T ss_pred             HHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhH
Confidence            566777888999999999999987655667777777775 56999999887644

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.87  E-value=0.33  Score=40.81  Aligned_cols=114  Identities=16%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +|+|+|+ |.+|..++++|...|..-+..+|+.....+..           |.+--..+.+...+.++++-+-..+....
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            4789999 99999999999999986344888875422211           22211122222223344444443333322


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCc
Q 020101          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi  162 (331)
                      .....+.. .+...++ .+.. +.+....+.+.+ +++++.++...+.|+
T Consensus        80 ~~~~~~~~-~~~diVi-~~~d-~~~~~~~l~~~~-~~~~i~~i~~~~~g~  125 (143)
T cd01483          80 EDNLDDFL-DGVDLVI-DAID-NIAVRRALNRAC-KELGIPVIDAGGLGL  125 (143)
T ss_pred             hhhHHHHh-cCCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEcCCCc
Confidence            22222222 3556544 3333 234445566777 788888887776653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02240 UDP-glucose 4-epimerase

Probab=92.86  E-value=0.68  Score=44.25  Aligned_cols=91  Identities=14%  Similarity=0.058  Sum_probs=54.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-------e-----ecCcccc-------cCHHHhhhcCCCCE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-------E-----HLGLPVF-------NTVAEAKAETKANA  102 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-------~-----i~G~p~y-------~sl~dl~~~~~iDl  102 (331)
                      +.+|+|.|++|-+|+.+++.|.+.|+++++..+......       .     ..++..+       .+++++.++.++|.
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~   84 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA   84 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence            356889999999999999999999998774322111000       0     0011111       23444443336899


Q ss_pred             EEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          103 SAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       103 aii~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++.+...                  .....+++.|.+.+++.++.+++
T Consensus        85 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  132 (352)
T PLN02240         85 VIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS  132 (352)
T ss_pred             EEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            8876531                  12335667777788887676554

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=92.77  E-value=0.36  Score=45.26  Aligned_cols=112  Identities=13%  Similarity=0.101  Sum_probs=63.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-------CCCCCC-ce--------------ecCcc-ccc-----CH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-------TPKKGG-TE--------------HLGLP-VFN-----TV   91 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-------nP~~~g-~~--------------i~G~p-~y~-----sl   91 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.-       ||..-- ++              +.+.+ -|+     +-
T Consensus        36 l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~  114 (254)
T cd05313          36 LKGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEG  114 (254)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCC
Confidence            35678999999 9999999999999999998653       443210 00              01110 011     22


Q ss_pred             HHhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101           92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus        92 ~dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      +++.. .++|+.+-|- ......+.+....+.+.+.|+=.+-|....+..+   .. +++|+.++ |+
T Consensus       115 ~~~~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~---~L-~~rGI~vv-PD  176 (254)
T cd05313         115 KKPWE-VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIE---VF-RQAGVLFA-PG  176 (254)
T ss_pred             cchhc-CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHH---HH-HHCCcEEE-Cc
Confidence            23332 3678877443 2333455666666668887553333322223222   22 56787776 65

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=92.71  E-value=0.73  Score=43.81  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      +|+|.|++|-.|+.+++.|.+.|++++..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~   30 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVIL   30 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence            68899999999999999999999997743

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.69  E-value=0.76  Score=43.12  Aligned_cols=86  Identities=20%  Similarity=0.175  Sum_probs=54.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee--cCccc-------ccCHHHhhhcCCCCEEEEecCh----
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPV-------FNTVAEAKAETKANASAIYVPP----  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i--~G~p~-------y~sl~dl~~~~~iDlaii~vp~----  109 (331)
                      +|.|.|++|-+|+.+++.|.+.|+++++... +... ...  .++..       ..+++++.+  .+|+++.+...    
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~~~   78 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR-RNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYRLW   78 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc-cccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecccC
Confidence            5789999999999999999999998774432 2210 111  12221       123455554  68988866531    


Q ss_pred             ------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                  .....+++.|.+.+++.++..++
T Consensus        79 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  113 (328)
T TIGR03466        79 APDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS  113 (328)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence                        11244567777888888776665

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=92.69  E-value=0.51  Score=43.99  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             EEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC-----------hh-----
Q 020101           47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP-----------PP-----  110 (331)
Q Consensus        47 IvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp-----------~~-----  110 (331)
                      |.|++|-+|+.+++.|.+.|++++...+. .    ...+.-+.+++++.+..++|++|-+..           +.     
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~~v~~~~~~-~----~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~   76 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGFTNLVLRTH-K----ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRE   76 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCCcEEEeecc-c----cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHH
Confidence            68999999999999999999886633322 2    123344556777766556899886641           11     


Q ss_pred             ---hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ---FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ---~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                         ....+++.|.+.+++.+|.+++
T Consensus        77 n~~~~~~ll~~~~~~~~~~~i~~SS  101 (306)
T PLN02725         77 NLQIQTNVIDAAYRHGVKKLLFLGS  101 (306)
T ss_pred             HhHHHHHHHHHHHHcCCCeEEEeCc
Confidence               1445788888899987776665

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.63  E-value=0.7  Score=41.48  Aligned_cols=119  Identities=19%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc-ccc------------CHHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-VFN------------TVAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p-~y~------------sl~dl~~~~~iDlaii~v  107 (331)
                      ++.+|.|+|+ |..|..++++|...|..-+..+|......+..+.. .|.            .+.+-..+.+||+-+...
T Consensus        18 ~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~   96 (198)
T cd01485          18 RSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV   96 (198)
T ss_pred             hhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            3466889999 55999999999999986444777765322222211 111            112223333566655444


Q ss_pred             Chhh--HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          108 PPPF--AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       108 p~~~--~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      ....  ..+...+..+ ....++ .+.. +.+....+.+.| +++++.++-..|.|+.-
T Consensus        97 ~~~~~~~~~~~~~~~~-~~dvVi-~~~d-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~G  151 (198)
T cd01485          97 EEDSLSNDSNIEEYLQ-KFTLVI-ATEE-NYERTAKVNDVC-RKHHIPFISCATYGLIG  151 (198)
T ss_pred             ecccccchhhHHHHHh-CCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEEeecCEE
Confidence            3222  1233333332 456544 3433 344445566777 78899988777776654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=92.62  E-value=0.49  Score=43.62  Aligned_cols=85  Identities=21%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee--cCcccc--cCHHHhhhcCCCCEEEEecChh---------
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--LGLPVF--NTVAEAKAETKANASAIYVPPP---------  110 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i--~G~p~y--~sl~dl~~~~~iDlaii~vp~~---------  110 (331)
                      |.|.|++|-.|+.+++.|.+.|+++++... +... +..  .++..+  ....+...  ++|.++-+....         
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~   77 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAG-ANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEE   77 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCC-CcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHH
Confidence            468999999999999999999999874432 2211 111  111111  12223333  689988766321         


Q ss_pred             -----------hHHHHHHHHHHcCCc-EEEEecC
Q 020101          111 -----------FAAAAILEAMEAELD-LVVCITE  132 (331)
Q Consensus       111 -----------~~~~~v~~~~~~Gi~-~ivi~t~  132 (331)
                                 .+..+++.|.+.|++ .+++.++
T Consensus        78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S  111 (292)
T TIGR01777        78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS  111 (292)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence                       145666777788874 4454443

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.59  E-value=0.36  Score=43.70  Aligned_cols=35  Identities=11%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|||+ |+.|..-++.|.+.|.+++ .|+|+.
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEEL   42 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence            4568899999 8888888889999998877 888865

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.58  E-value=0.48  Score=42.60  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=60.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccc-c----------cCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-F----------NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~-y----------~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |.+|..++++|...|..-+..+|+.....+..+... |          ..+.+-..+.++++-+...+.
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            4566889999 889999999999999853338888753222122111 1          112222222345555544443


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ....+.+++.. .+...++. +..- .+....+.+.+ +++++.++-..+.|
T Consensus        99 ~i~~~~~~~~~-~~~D~Vi~-~~d~-~~~r~~l~~~~-~~~~ip~i~~~~~g  146 (202)
T TIGR02356        99 RVTAENLELLI-NNVDLVLD-CTDN-FATRYLINDAC-VALGTPLISAAVVG  146 (202)
T ss_pred             cCCHHHHHHHH-hCCCEEEE-CCCC-HHHHHHHHHHH-HHcCCCEEEEEecc
Confidence            33333344443 35565443 3321 22223344555 66777665544433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=92.56  E-value=0.93  Score=44.20  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=62.1

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCCCCCCceecCccc---ccCHHHhhhcCCCCEEEEecChhh-HH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPV---FNTVAEAKAETKANASAIYVPPPF-AA  113 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP~~~g~~i~G~p~---y~sl~dl~~~~~iDlaii~vp~~~-~~  113 (331)
                      .++..+|.|+|. |++|+.+++.|..+|..+.|- -++..  .++ -...   +-+++++..  +-|+++++.|-.. ..
T Consensus       159 ~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~--~~~-~~~~~~~~~d~~~~~~--~sD~ivv~~pLt~~T~  232 (336)
T KOG0069|consen  159 DLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLP--PEE-AYEYYAEFVDIEELLA--NSDVIVVNCPLTKETR  232 (336)
T ss_pred             cccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCc--hhh-HHHhcccccCHHHHHh--hCCEEEEecCCCHHHH
Confidence            556788999999 999999999999988445432 22221  111 1123   448889887  7899999998643 33


Q ss_pred             HHH--HHHHHcCCcEEEE-ecCCCChhHHHHHHHHHhccCC
Q 020101          114 AAI--LEAMEAELDLVVC-ITEGIPQHDMVRVKAALNNQSK  151 (331)
Q Consensus       114 ~~v--~~~~~~Gi~~ivi-~t~G~~e~~~~~l~~~a~~~~g  151 (331)
                      .++  +.+...+...+++ .+-|- --+.+.+.+.. ++..
T Consensus       233 ~liNk~~~~~mk~g~vlVN~aRG~-iide~~l~eaL-~sG~  271 (336)
T KOG0069|consen  233 HLINKKFIEKMKDGAVLVNTARGA-IIDEEALVEAL-KSGK  271 (336)
T ss_pred             HHhhHHHHHhcCCCeEEEeccccc-cccHHHHHHHH-hcCC
Confidence            333  3344455554333 22232 12333455555 4444

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.35  E-value=0.11  Score=43.73  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ec-C----cccccCHHHhhhcCCCCEEEEecChh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HL-G----LPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~-G----~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      -+..+|+|+|+ |.+++.++..|.+.|++-+..+|.+... ++   .. +    .--|.++.+...  +.|++|-+||..
T Consensus        10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~   86 (135)
T PF01488_consen   10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSG   86 (135)
T ss_dssp             GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTT
T ss_pred             cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCC
Confidence            35678899999 9999999999999999845589987521 11   11 1    113344555555  789999999876


Q ss_pred             hHHHHHHHHHHcCC
Q 020101          111 FAAAAILEAMEAEL  124 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi  124 (331)
                      .. .+-++.++...
T Consensus        87 ~~-~i~~~~~~~~~   99 (135)
T PF01488_consen   87 MP-IITEEMLKKAS   99 (135)
T ss_dssp             ST-SSTHHHHTTTC
T ss_pred             Cc-ccCHHHHHHHH
Confidence            54 33344455443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=92.34  E-value=0.83  Score=42.63  Aligned_cols=88  Identities=13%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCC-Cc---eec---Ccccc-------cCHHHhhhcCCCCEEEEecC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-GT---EHL---GLPVF-------NTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~-g~---~i~---G~p~y-------~sl~dl~~~~~iDlaii~vp  108 (331)
                      +|+|.|++|.+|+.+++.|.+.|++++ .++ +... ..   ...   ++..+       .+++++....++|.++.+..
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVV-VLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEE-EEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence            478899999999999999999999876 443 1110 00   010   11111       12444443336899886653


Q ss_pred             h------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 P------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .                  .....+++.|.+.+++.++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss  121 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS  121 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence            2                  12345566777788877776554

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.34  E-value=0.27  Score=50.58  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=48.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e-------------ecC-------------cccccCHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-------------HLG-------------LPVFNTVAE   93 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-------------i~G-------------~p~y~sl~d   93 (331)
                      +-.+|+|||+ |.||..+..++...|++++ ..|++...- .             -.|             +..-.++++
T Consensus         6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            3456899999 9999999999999999876 666554100 0             012             344456766


Q ss_pred             hhhcCCCCEEEEecChhhHHH
Q 020101           94 AKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        94 l~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.   +.|++|-++|.+...+
T Consensus        84 ~~---~aDlViEav~E~~~vK  101 (507)
T PRK08268         84 LA---DCDLVVEAIVERLDVK  101 (507)
T ss_pred             hC---CCCEEEEcCcccHHHH
Confidence            53   6899999999876544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.33  E-value=0.83  Score=42.33  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...|-+           ..+...+.++++-|...+.
T Consensus        23 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        23 KASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            3467899999 889999999999998764448888764332223222221           1222222345555555543


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~  160 (331)
                      ....+.+.+.++ +...++..+..  .+....+.+.| +++++.++-....
T Consensus       102 ~i~~~~~~~~~~-~~DlVvd~~D~--~~~r~~ln~~~-~~~~ip~v~~~~~  148 (240)
T TIGR02355       102 KLDDAELAALIA-EHDIVVDCTDN--VEVRNQLNRQC-FAAKVPLVSGAAI  148 (240)
T ss_pred             cCCHHHHHHHhh-cCCEEEEcCCC--HHHHHHHHHHH-HHcCCCEEEEEec
Confidence            333333444332 45654432222  22233445555 6777776654433

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=92.31  E-value=0.32  Score=39.70  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh------hhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~------~~~~~~v  116 (331)
                      .||.|+|- |-....+++.+++.|++.+ .||.+.  +..     -.   +..   ..|-++.--|.      -....++
T Consensus         3 kkvLIanr-Geia~r~~ra~r~~Gi~tv-~v~s~~--d~~-----s~---~~~---~ad~~~~~~~~~~~~~yl~~e~I~   67 (110)
T PF00289_consen    3 KKVLIANR-GEIAVRIIRALRELGIETV-AVNSNP--DTV-----ST---HVD---MADEAYFEPPGPSPESYLNIEAII   67 (110)
T ss_dssp             SEEEESS--HHHHHHHHHHHHHTTSEEE-EEEEGG--GTT-----GH---HHH---HSSEEEEEESSSGGGTTTSHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhCCcce-eccCch--hcc-----cc---ccc---ccccceecCcchhhhhhccHHHHh
Confidence            46777776 6666777888999999977 555443  111     01   111   13444322111      3456667


Q ss_pred             HHHHHcCCcEEEEecCCCC-hhHHHHHHHHHhccCCcEEEccC
Q 020101          117 LEAMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      +-+.+.|+..++   +|+. -.+..++.+.+ +++|+.++||+
T Consensus        68 ~ia~~~g~~~i~---pGyg~lse~~~fa~~~-~~~gi~fiGp~  106 (110)
T PF00289_consen   68 DIARKEGADAIH---PGYGFLSENAEFAEAC-EDAGIIFIGPS  106 (110)
T ss_dssp             HHHHHTTESEEE---STSSTTTTHHHHHHHH-HHTT-EESSS-
T ss_pred             hHhhhhcCcccc---cccchhHHHHHHHHHH-HHCCCEEECcC
Confidence            777777888755   4432 12333566666 68999999997

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK08328 hypothetical protein; Provisional

Probab=92.24  E-value=0.74  Score=42.36  Aligned_cols=118  Identities=12%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHH------------hhhcCCCCEEEEecC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAE------------AKAETKANASAIYVP  108 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~d------------l~~~~~iDlaii~vp  108 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...+.+-++            -..+.++|+-|...+
T Consensus        26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            3456889999 889999999999999864448887764222222222211111            112235677666544


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      .....+.+++.. .+...|+..+..+  +....+.+.| +++++.++.-.+.|+.
T Consensus       105 ~~~~~~~~~~~l-~~~D~Vid~~d~~--~~r~~l~~~~-~~~~ip~i~g~~~g~~  155 (231)
T PRK08328        105 GRLSEENIDEVL-KGVDVIVDCLDNF--ETRYLLDDYA-HKKGIPLVHGAVEGTY  155 (231)
T ss_pred             ccCCHHHHHHHH-hcCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEeeccCE
Confidence            433334444444 3567655433332  2223344556 7888888866665543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=92.20  E-value=0.14  Score=40.92  Aligned_cols=81  Identities=19%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CCce-ecCcccccCHHHhhhcCCCCEEEEecChhhH-HH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTE-HLGLPVFNTVAEAKAETKANASAIYVPPPFA-AA  114 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~  114 (331)
                      .-+..+|+|||. |+.+..-++.|.+.|.++. .+.|..  ..+. .+-...|+  ++ .+  +.|+++.+++.... ..
T Consensus         4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~~~~~~~i~~~~~~~~--~~-l~--~~~lV~~at~d~~~n~~   76 (103)
T PF13241_consen    4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEIEFSEGLIQLIRREFE--ED-LD--GADLVFAATDDPELNEA   76 (103)
T ss_dssp             --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSEHHHHTSCEEEESS-G--GG-CT--TESEEEE-SS-HHHHHH
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCchhhhhhHHHHHhhhHH--HH-Hh--hheEEEecCCCHHHHHH
Confidence            456788999999 8888877888888898876 777762  0011 11112231  23 33  57999999966554 44


Q ss_pred             HHHHHHHcCCcE
Q 020101          115 AILEAMEAELDL  126 (331)
Q Consensus       115 ~v~~~~~~Gi~~  126 (331)
                      +.++|-++|+..
T Consensus        77 i~~~a~~~~i~v   88 (103)
T PF13241_consen   77 IYADARARGILV   88 (103)
T ss_dssp             HHHHHHHTTSEE
T ss_pred             HHHHHhhCCEEE
Confidence            556666677654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.17  E-value=0.27  Score=49.25  Aligned_cols=78  Identities=15%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe--CCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH-HH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-IL  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V--nP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~-v~  117 (331)
                      ..+|+|+|+ |.+|..+++.++..|.+++ .+  ||.... ..-.|..+. ++++...  ..|+++.++....+... .-
T Consensus       202 GktVvViG~-G~IG~~va~~ak~~Ga~Vi-V~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l  276 (413)
T cd00401         202 GKVAVVAGY-GDVGKGCAQSLRGQGARVI-VTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHF  276 (413)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHH
Confidence            556889999 9999999999999999865 45  443310 013465433 3556555  68999999876554442 24


Q ss_pred             HHHHcCC
Q 020101          118 EAMEAEL  124 (331)
Q Consensus       118 ~~~~~Gi  124 (331)
                      ++.+.|.
T Consensus       277 ~~mk~Gg  283 (413)
T cd00401         277 EQMKDGA  283 (413)
T ss_pred             hcCCCCc
Confidence            4445544

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.10  E-value=0.51  Score=41.97  Aligned_cols=87  Identities=23%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-------------------------cCcccccCHHHhhhc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE   97 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-------------------------~G~p~y~sl~dl~~~   97 (331)
                      ++|+|+|. |..|-..+-.|.+.|++++ ++|.+.  +.+                         ..+....+.++... 
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~-g~D~~~--~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-   75 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGHQVI-GVDIDE--EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEE-EE-S-H--HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH-
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCCEEE-EEeCCh--HHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh-
Confidence            47899999 8888888888889999988 655543  111                         11233345666555 


Q ss_pred             CCCCEEEEecChhh----------HHHHHHHHHHcC-CcEEEEecCCCC
Q 020101           98 TKANASAIYVPPPF----------AAAAILEAMEAE-LDLVVCITEGIP  135 (331)
Q Consensus        98 ~~iDlaii~vp~~~----------~~~~v~~~~~~G-i~~ivi~t~G~~  135 (331)
                       +.|++++|+|...          +..+++...+.- -..++++-+-++
T Consensus        76 -~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp  123 (185)
T PF03721_consen   76 -DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP  123 (185)
T ss_dssp             -H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred             -ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence             6899999998542          445555544422 234555555443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=91.99  E-value=0.49  Score=47.12  Aligned_cols=88  Identities=13%  Similarity=0.001  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCC-----------CCC--------------Cce--ecCc--cccc-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-----------KKG--------------GTE--HLGL--PVFN-   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP-----------~~~--------------g~~--i~G~--p~y~-   89 (331)
                      ++|+|.|+ |++|+.+++.+.+.   ..+++ .||.           +++              |+.  +.|.  +++. 
T Consensus        61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-aINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~  138 (395)
T PLN03096         61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-AINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSD  138 (395)
T ss_pred             cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-EEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEc
Confidence            68999999 99999999988765   34676 4443           111              111  2232  3332 


Q ss_pred             -CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        90 -sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                       ++++++= +.++|+++.++......+.+...+++|.+.|++-++
T Consensus       139 ~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap  183 (395)
T PLN03096        139 RNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP  183 (395)
T ss_pred             CCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence             3666653 248999999999999999999999999998665333

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.95  E-value=0.35  Score=49.75  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------ecC-------------cccccCHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------HLG-------------LPVFNTVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------i~G-------------~p~y~sl~dl~   95 (331)
                      .+|+|||+ |.||+.++.++...|++++ .+|.+...-+              -.|             +....+++++.
T Consensus         6 ~kV~VIGa-G~MG~gIA~~la~aG~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         6 VTVAVIGA-GAMGAGIAQVAASAGHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             cEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            45889999 9999999999999999866 5555431000              012             22345676653


Q ss_pred             hcCCCCEEEEecChhhH
Q 020101           96 AETKANASAIYVPPPFA  112 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~~  112 (331)
                         +.|++|-++|.+..
T Consensus        84 ---~aDlVIEav~E~~~   97 (503)
T TIGR02279        84 ---DAGLVIEAIVENLE   97 (503)
T ss_pred             ---CCCEEEEcCcCcHH
Confidence               68999999997544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=91.91  E-value=0.74  Score=42.51  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=86.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|+|+|+ |-.|..++++|...|..-+..||+.....+......+..           +.+-..+.+|++-|...+..
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~   89 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF   89 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence            456889999 889999999999998753337787653222222222221           22223334667777666655


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC-cccCCCcccccCCCCCCCCCCEEEEecC
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG-VIKPGECKIGIMPGYIHKPGRIGIVSRS  189 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G-i~~p~~~~~~~~~~~~~~~G~valisQS  189 (331)
                      ...+...+....+...++. +..- .+....|.++| +++++.+|---..| -.+|.++.             |+=|+++
T Consensus        90 i~~~~~~~l~~~~~D~Vvd-aiD~-~~~k~~L~~~c-~~~~ip~I~s~g~g~~~dp~~i~-------------i~di~~t  153 (231)
T cd00755          90 LTPDNSEDLLGGDPDFVVD-AIDS-IRAKVALIAYC-RKRKIPVISSMGAGGKLDPTRIR-------------VADISKT  153 (231)
T ss_pred             cCHhHHHHHhcCCCCEEEE-cCCC-HHHHHHHHHHH-HHhCCCEEEEeCCcCCCCCCeEE-------------EccEecc
Confidence            5555666666666776553 3332 22334566777 77888877532222 23333221             3333333


Q ss_pred             h--HHHHHHHHHHHhCCC--CceEEEec
Q 020101          190 G--TLTYEAVFQTTAVGL--GQSTCVGI  213 (331)
Q Consensus       190 G--~~~~~~~~~~~~~g~--g~s~~vs~  213 (331)
                      -  -++..+-..++++|+  |+..+-|+
T Consensus       154 ~~~pla~~~R~~Lrk~~~~~~~~~v~S~  181 (231)
T cd00755         154 SGDPLARKVRKRLRKRGIFFGVPVVYST  181 (231)
T ss_pred             ccCcHHHHHHHHHHHcCCCCCeEEEeCC
Confidence            3  455666677777776  34444454

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=91.90  E-value=0.22  Score=48.14  Aligned_cols=88  Identities=11%  Similarity=0.059  Sum_probs=62.4

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-ce-------ecCc--ccccCHHHhhhcCCCCEEEEec
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE-------HLGL--PVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~~-------i~G~--p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+...+++|+|+ |.+++.++..+.. .+.+.+..+|+.... ++       ..++  ..|.+++++..  +.|+++.+|
T Consensus       124 ~~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT  200 (325)
T PRK08618        124 REDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVT  200 (325)
T ss_pred             CCCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEcc
Confidence            345677999999 9999988877654 577766688876521 11       1243  35778888876  799999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEec
Q 020101          108 PPPFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      |.. ++-+- ++++.|.+..-+.+
T Consensus       201 ~s~-~p~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        201 NAK-TPVFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             CCC-CcchH-HhcCCCcEEEecCC
Confidence            976 45455 88899988755533

>PLN02583 cinnamoyl-CoA reductase

Probab=91.88  E-value=1.2  Score=41.90  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|+++++.+
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~   37 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAV   37 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence            44688999999999999999999999987544

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=91.86  E-value=0.54  Score=44.43  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-cCcccccCHHHhhhcCCCCEEEEecC----------hh--
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVP----------PP--  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-~G~p~y~sl~dl~~~~~iDlaii~vp----------~~--  110 (331)
                      +|.|.|++|-+|+.+.+.|.+.| +++ .++...  ..+ ..+.-...++++.++.++|++|-+.-          ++  
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~-~~~~~~--~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~   77 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLI-ALDVHS--TDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFA   77 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEE-Eecccc--ccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHH
Confidence            68899999999999999998888 665 444322  111 22333334555555446898885431          11  


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                            ....+++.|.+.|++. +.+++
T Consensus        78 ~~~N~~~~~~l~~aa~~~g~~~-v~~Ss  104 (299)
T PRK09987         78 QLLNATSVEAIAKAANEVGAWV-VHYST  104 (299)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeE-EEEcc
Confidence                  1334667788888864 54555

>PRK12320 hypothetical protein; Provisional

Probab=91.84  E-value=0.72  Score=49.27  Aligned_cols=86  Identities=17%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc------cCHHHhhhcCCCCEEEEecChh-------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF------NTVAEAKAETKANASAIYVPPP-------  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y------~sl~dl~~~~~iDlaii~vp~~-------  110 (331)
                      +|+|.|++|-+|+.+++.|.+.|+++++..+.... ....++..+      +.+.++..  ++|.++-+.+..       
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~-~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~v   78 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD-ALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGGV   78 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh-cccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhhH
Confidence            68899999999999999999999998855442110 000111111      12444444  689999887632       


Q ss_pred             ---hHHHHHHHHHHcCCcEEEEecCC
Q 020101          111 ---FAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       111 ---~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                         .+..+++.|.+.|++ ++.+++.
T Consensus        79 Nv~Gt~nLleAA~~~GvR-iV~~SS~  103 (699)
T PRK12320         79 GITGLAHVANAAARAGAR-LLFVSQA  103 (699)
T ss_pred             HHHHHHHHHHHHHHcCCe-EEEEECC
Confidence               144567888889987 4545543

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=91.82  E-value=0.91  Score=41.50  Aligned_cols=114  Identities=19%  Similarity=0.136  Sum_probs=59.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~  109 (331)
                      ++.+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...+-           .+.+-..+.++++-+...+.
T Consensus        20 ~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            3567889999 88999999999999986444787765322222221111           12222223345555555444


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      ....+.+.+..+ +...++. +..- .+....+.+.| +++++.++--.+
T Consensus        99 ~i~~~~~~~~~~-~~DvVi~-~~d~-~~~r~~l~~~~-~~~~ip~i~~g~  144 (228)
T cd00757          99 RLDAENAEELIA-GYDLVLD-CTDN-FATRYLINDAC-VKLGKPLVSGAV  144 (228)
T ss_pred             eeCHHHHHHHHh-CCCEEEE-cCCC-HHHHHHHHHHH-HHcCCCEEEEEe
Confidence            333333444332 4565443 3332 22333445555 567766554343

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=91.79  E-value=0.41  Score=40.32  Aligned_cols=28  Identities=21%  Similarity=0.135  Sum_probs=23.5

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcC--CeEEEE
Q 020101           45 VICQGITGKNGTFHTEQAIEYG--TKMVGG   72 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g--~~iv~~   72 (331)
                      |+|.|+||.+|+..++.++++.  |++++.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~L   30 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVAL   30 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEE
Confidence            5689999999999999998874  888754

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=91.74  E-value=0.44  Score=43.16  Aligned_cols=55  Identities=29%  Similarity=0.422  Sum_probs=42.0

Q ss_pred             CCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCC
Q 020101          221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTA  275 (331)
Q Consensus       221 v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~  275 (331)
                      -.+.+.|+.+.+||++++|++.+++.|.......++.++++   .+||||++--|...
T Consensus        28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~   85 (214)
T cd07022          28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAA   85 (214)
T ss_pred             HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchh
Confidence            35677778889999999999999987654555566666664   36999999988644

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=91.66  E-value=1.1  Score=43.69  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             CcHHHHHHHHcCCeEEEEeCCCCCC--------ceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHHHHHHcC-C
Q 020101           55 GTFHTEQAIEYGTKMVGGVTPKKGG--------TEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILEAMEAE-L  124 (331)
Q Consensus        55 G~~~~~~l~~~g~~iv~~VnP~~~g--------~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~~~~~~G-i  124 (331)
                      |.....+|.+.|++++ .+|++...        -...|+.+..+..++..  +.|++++++|... +.++++.+...- -
T Consensus        32 G~~MA~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~~  108 (342)
T PRK12557         32 GSRMAIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLPE  108 (342)
T ss_pred             HHHHHHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCCC
Confidence            3455677888899866 77775410        01246777778877766  7899999999988 677777665432 2


Q ss_pred             cEEEEecCCCChhHH-HHHHHH
Q 020101          125 DLVVCITEGIPQHDM-VRVKAA  145 (331)
Q Consensus       125 ~~ivi~t~G~~e~~~-~~l~~~  145 (331)
                      ..+|+-++..+.... +.+.+.
T Consensus       109 g~IVId~ST~~~~~~s~~l~~~  130 (342)
T PRK12557        109 NAVICNTCTVSPVVLYYSLEGE  130 (342)
T ss_pred             CCEEEEecCCCHHHHHHHHHHH
Confidence            233443333344433 344333

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.57  E-value=1.2  Score=42.11  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+........+...+..           +.+-..+.++++-|...+.
T Consensus        29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~  107 (268)
T PRK15116         29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD  107 (268)
T ss_pred             cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence            4566889999 889999999999998643337777653222233333221           2222333467776666554


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ....+..++....+...|| -+.+- ......|.+.| +++++.++
T Consensus       108 ~i~~e~~~~ll~~~~D~VI-daiD~-~~~k~~L~~~c-~~~~ip~I  150 (268)
T PRK15116        108 FITPDNVAEYMSAGFSYVI-DAIDS-VRPKAALIAYC-RRNKIPLV  150 (268)
T ss_pred             ccChhhHHHHhcCCCCEEE-EcCCC-HHHHHHHHHHH-HHcCCCEE
Confidence            4445566666666677654 34442 22334566777 78888876

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=91.53  E-value=1.3  Score=42.51  Aligned_cols=31  Identities=26%  Similarity=0.521  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      ++.+|+|.|++|-+|+.+.+.|.+.|+++++
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~   33 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYG   33 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEE
Confidence            4567899999999999999999999999774

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK06179 short chain dehydrogenase; Provisional

Probab=91.49  E-value=2.5  Score=38.69  Aligned_cols=30  Identities=17%  Similarity=0.303  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      ...|+|.|++|.+|+.+.+.|.+.|++++.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~   33 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFG   33 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEE
Confidence            345788999999999999999999999763

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=91.40  E-value=0.6  Score=42.02  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=40.1

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCC
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTA  275 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvv~k~Grs~  275 (331)
                      .+.+.|+.+.+||++++|++++.+.|-......++.+++   + .+||||++--|.+.
T Consensus        21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~   78 (208)
T cd07023          21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAA   78 (208)
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcch
Confidence            356777788899999999999998665455444444443   3 58999999988654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PTZ00117 malate dehydrogenase; Provisional

Probab=91.37  E-value=1.8  Score=41.70  Aligned_cols=87  Identities=14%  Similarity=0.123  Sum_probs=55.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCC---Cce--------ecC----cccccCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG---GTE--------HLG----LPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~---g~~--------i~G----~p~y~sl~dl~~~~~iDlai  104 (331)
                      |..||+|||+ |.+|+.+...+...| .+++ .+|.+..   |..        ..+    +..+.+.+++ .  +.|++|
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~-L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~--~ADiVV   78 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-K--DSDVVV   78 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEE-EEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-C--CCCEEE
Confidence            5668999999 999999888777767 4643 6665431   111        111    1223456655 3  689999


Q ss_pred             Eec--Ch--------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          105 IYV--PP--------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       105 i~v--p~--------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++.  |.              +...+++++..+...+.++++.+
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs  122 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT  122 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            988  32              33567777777787777454443

>PRK14851 hypothetical protein; Provisional

Probab=91.36  E-value=0.94  Score=48.29  Aligned_cols=112  Identities=12%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+........           |.+-..-+++...+.++++-|...+.
T Consensus        42 ~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~  120 (679)
T PRK14851         42 AEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA  120 (679)
T ss_pred             hcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence            4567899999 88999999999988864233666544311111           21111112222222345555555544


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ....+.+++.++ ++..|+..+..++-+.-..+.+.| +++++.+|
T Consensus       121 ~i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c-~~~~iP~i  164 (679)
T PRK14851        121 GINADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMA-REKGIPVI  164 (679)
T ss_pred             CCChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHCCCCEE
Confidence            444455555544 566544333333222222344445 56666655

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=91.34  E-value=1.1  Score=43.62  Aligned_cols=89  Identities=16%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCc--------------e--ecCcccccCHHHhhhcCCCCEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--------------E--HLGLPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~--------------~--i~G~p~y~sl~dl~~~~~iDla  103 (331)
                      ....|.|.||||=+|+.+++.|++.||++.+-|- |.....              .  ...+.-|.++++..+  ++|.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence            4567899999999999999999999999887553 432100              0  124455667777776  78888


Q ss_pred             E-EecChh----------------hHHHHHHHHHHcC-CcEEEEecC
Q 020101          104 A-IYVPPP----------------FAAAAILEAMEAE-LDLVVCITE  132 (331)
Q Consensus       104 i-i~vp~~----------------~~~~~v~~~~~~G-i~~ivi~t~  132 (331)
                      + ++.|.+                -+..+++.|.+.. |+.+| +|+
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV-~TS  128 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVV-YTS  128 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEE-Eec
Confidence            7 444422                2455788888888 99966 554

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.26  E-value=0.83  Score=44.58  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-------------HHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-------------VAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-------------l~dl~~~~~iDlaii~v  107 (331)
                      +..+|+|+|+ |..|..++++|...|..-+..||+.....+......+-+             ..+-..+.++++-+...
T Consensus        23 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         23 REKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            4566899999 999999999999999853348888653222122222211             11222223455545444


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~  160 (331)
                      ..+...+.+.+.++ +...++..+..+  +....+.+.| .++++.++-..+.
T Consensus       102 ~~~~~~~~~~~~~~-~~DlVid~~Dn~--~~r~~ln~~~-~~~~iP~i~~~~~  150 (339)
T PRK07688        102 VQDVTAEELEELVT-GVDLIIDATDNF--ETRFIVNDAA-QKYGIPWIYGACV  150 (339)
T ss_pred             eccCCHHHHHHHHc-CCCEEEEcCCCH--HHHHHHHHHH-HHhCCCEEEEeee
Confidence            44444444555543 456655433332  2222344555 5677765543433

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.23  E-value=0.46  Score=47.32  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCc-----ccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-----PVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~-----p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      .+|.|+|. |..|..+++.|.+.|++++ +.|++.  ....-.     ......+.++.  +.|++|.+.+....-+.++
T Consensus         4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~--~~~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l~   77 (418)
T PRK00683          4 QRVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSL--EALQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWVQ   77 (418)
T ss_pred             CeEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCc--cccchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHHH
Confidence            46889999 9999988999999999866 777654  211101     11223333444  5799888876655667788


Q ss_pred             HHHHcCCcE
Q 020101          118 EAMEAELDL  126 (331)
Q Consensus       118 ~~~~~Gi~~  126 (331)
                      +|.++|++.
T Consensus        78 ~A~~~g~~v   86 (418)
T PRK00683         78 AAIASHIPV   86 (418)
T ss_pred             HHHHCCCcE
Confidence            888888763

>cd07014 S49_SppA Signal peptide peptidase A

Probab=91.22  E-value=0.65  Score=40.68  Aligned_cols=55  Identities=20%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH---HHHHhC-CCCCEEEEEeCCCCC
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA---LIKESG-TEKPIVAFIAGLTAP  276 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~---f~~a~r-~~KPVvv~k~Grs~~  276 (331)
                      .+.+.++.+.+||++++|++.+.+.|.......+   ++++.+ .+||||++--|....
T Consensus        26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g   84 (177)
T cd07014          26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAAS   84 (177)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhH
Confidence            3455566677899999999999886654444433   333444 789999999876554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=91.16  E-value=0.54  Score=42.53  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHH---HHHhC-CCCCEEEEEeCCCC
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAAL---IKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f---~~a~r-~~KPVvv~k~Grs~  275 (331)
                      ++.+.|+.+.+||++++|+|.+.+.|-......++   ++.++ .+||||++-.|...
T Consensus        25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~   82 (211)
T cd07019          25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA   82 (211)
T ss_pred             HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence            46677788899999999999988776555444443   33444 68999999988764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=91.08  E-value=0.75  Score=44.92  Aligned_cols=88  Identities=15%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC--------------Cc---e---------ecC--ccccc--CH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG--------------GT---E---------HLG--LPVFN--TV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~--------------g~---~---------i~G--~p~y~--sl   91 (331)
                      +||+|-|. |++|+.++|.+.+. ++++++.-||...              |.   +         +.|  ++++.  +.
T Consensus         3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp   81 (337)
T PTZ00023          3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP   81 (337)
T ss_pred             eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence            68999999 99999999987654 6888855444311              00   0         123  23443  57


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +++|= +.++|+++.++......+.+...+++|.+.|++ +.
T Consensus        82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa  122 (337)
T PTZ00023         82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA  122 (337)
T ss_pred             hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence            77773 357999999999999999999999999998664 44

>PLN02306 hydroxypyruvate reductase

Probab=90.92  E-value=0.45  Score=47.29  Aligned_cols=65  Identities=14%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHH-HcCCeEEEEeCCCCCCc-e----ecC------------cccccCHHHhhhcCCCCE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT-E----HLG------------LPVFNTVAEAKAETKANA  102 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~-~~g~~iv~~VnP~~~g~-~----i~G------------~p~y~sl~dl~~~~~iDl  102 (331)
                      ...+|.|+|. |++|+.+++.+. .+|.+++ .+||....+ .    ..|            ...+.+++++..  ..|+
T Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDi  239 (386)
T PLN02306        164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADV  239 (386)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCE
Confidence            4567889999 999999999985 7899987 777754100 0    111            122358999988  7899


Q ss_pred             EEEecCh
Q 020101          103 SAIYVPP  109 (331)
Q Consensus       103 aii~vp~  109 (331)
                      +++.+|-
T Consensus       240 V~lh~Pl  246 (386)
T PLN02306        240 ISLHPVL  246 (386)
T ss_pred             EEEeCCC
Confidence            9999884

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.86  E-value=0.58  Score=44.39  Aligned_cols=67  Identities=18%  Similarity=0.091  Sum_probs=45.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------ecC-------------cccccCHHHh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------HLG-------------LPVFNTVAEA   94 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------i~G-------------~p~y~sl~dl   94 (331)
                      ..+|+|||+ |.||.-++..+...|++++ .+|+....-+              -.|             +....+++++
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   82 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF   82 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence            347899999 9999999999999999865 5444331000              011             2245567554


Q ss_pred             hhcCCCCEEEEecChhhHH
Q 020101           95 KAETKANASAIYVPPPFAA  113 (331)
Q Consensus        95 ~~~~~iDlaii~vp~~~~~  113 (331)
                       +  +.|+++-++|.+...
T Consensus        83 -~--~~d~ViEav~E~~~~   98 (286)
T PRK07819         83 -A--DRQLVIEAVVEDEAV   98 (286)
T ss_pred             -C--CCCEEEEecccCHHH
Confidence             3  689999999986653

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=90.84  E-value=0.81  Score=46.09  Aligned_cols=118  Identities=16%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP-  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~-  109 (331)
                      +.+|.|+|+ |-.|..++++|.-.|..-+..||+.....+..|.-.+-+           +.+...+.++|+-+.+... 
T Consensus        20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~   98 (425)
T cd01493          20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES   98 (425)
T ss_pred             hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            456889999 669999999999989864448888764333233222221           2222334467776655432 


Q ss_pred             -hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          110 -PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       110 -~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                       +...+...+.. .+...|+  .+..++....++.+.| +++++.+|-.++.|++-
T Consensus        99 ~~~ll~~~~~f~-~~fdiVI--~t~~~~~~~~~L~~~c-~~~~iPlI~~~s~G~~G  150 (425)
T cd01493          99 PEALLDNDPSFF-SQFTVVI--ATNLPESTLLRLADVL-WSANIPLLYVRSYGLYG  150 (425)
T ss_pred             cchhhhhHHHHh-cCCCEEE--ECCCCHHHHHHHHHHH-HHcCCCEEEEecccCEE
Confidence             21122112222 2445433  3444555556677777 78888888888888775

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=90.80  E-value=0.74  Score=43.81  Aligned_cols=78  Identities=18%  Similarity=0.128  Sum_probs=52.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----------------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----------------  107 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v----------------  107 (331)
                      +|+|.|++|.+|+.+.+.+. .+++++ +.+.+.     ..+.-..++.++..+.+||++|-+-                
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~-a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~   74 (281)
T COG1091           2 KILITGANGQLGTELRRALP-GEFEVI-ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAF   74 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC-CCceEE-eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHH
Confidence            47899999999998888887 567777 554432     2344455677777766789988652                


Q ss_pred             --ChhhHHHHHHHHHHcCCcEEE
Q 020101          108 --PPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus       108 --p~~~~~~~v~~~~~~Gi~~iv  128 (331)
                        ....+..+++.|.+.|.+.|-
T Consensus        75 ~vNa~~~~~lA~aa~~~ga~lVh   97 (281)
T COG1091          75 AVNATGAENLARAAAEVGARLVH   97 (281)
T ss_pred             HhHHHHHHHHHHHHHHhCCeEEE
Confidence              222344456667777777644

>PRK14030 glutamate dehydrogenase; Provisional

Probab=90.77  E-value=1.2  Score=45.20  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCC-cee-------------c-----Ccc--cccCH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEH-------------L-----GLP--VFNTV   91 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g-~~i-------------~-----G~p--~y~sl   91 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.       .||+..- +.+             .     ++|  -|-+-
T Consensus       226 l~g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~  304 (445)
T PRK14030        226 IKGKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAG  304 (445)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCC
Confidence            46788999998 999999999999999998854       5655321 010             0     111  00012


Q ss_pred             HHhhhcCCCCEEEEe-cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101           92 AEAKAETKANASAIY-VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus        92 ~dl~~~~~iDlaii~-vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      +++.. .++|+++=| +......+.++...+.+.+.|+=.+-|....+..++   . +++||.++ |.
T Consensus       305 ~~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i---L-~~rGI~~v-PD  366 (445)
T PRK14030        305 KKPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK---F-IAAKQLFA-PG  366 (445)
T ss_pred             cccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH---H-HHCCCEEe-Cc
Confidence            23222 467887743 344556677777777789986644445332333332   2 56777665 54

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=90.73  E-value=1.2  Score=41.25  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+.....+..+...+-           ...+-..+.++++-|...+.
T Consensus        31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            4567899999 88999999999999875333777765422222222221           11222222345555554444


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~  160 (331)
                      ....+.+++..+ +...++..+..+  +....+.+++ +++++.++--.+.
T Consensus       110 ~i~~~~~~~~~~-~~DiVi~~~D~~--~~r~~ln~~~-~~~~ip~v~~~~~  156 (245)
T PRK05690        110 RLDDDELAALIA-GHDLVLDCTDNV--ATRNQLNRAC-FAAKKPLVSGAAI  156 (245)
T ss_pred             cCCHHHHHHHHh-cCCEEEecCCCH--HHHHHHHHHH-HHhCCEEEEeeec
Confidence            333333444332 456544333222  2223344555 6777776654443

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.71  E-value=1.2  Score=48.50  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=71.1

Q ss_pred             ccccc--CCCCeEEEEEcCCCCCCcHHHHHHHH-------cCC--eEEEEeCCCCCCceecCccc--c----------cC
Q 020101           34 APAVF--VDKNTRVICQGITGKNGTFHTEQAIE-------YGT--KMVGGVTPKKGGTEHLGLPV--F----------NT   90 (331)
Q Consensus        34 l~~ll--~~k~~~VaIvGasgk~G~~~~~~l~~-------~g~--~iv~~VnP~~~g~~i~G~p~--y----------~s   90 (331)
                      |++-|  ..+.++|+|+|. |+.|+.+++.+.+       .|+  ++++..|.+..--...|+..  +          .+
T Consensus       455 LH~~f~~~~~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~  533 (819)
T PRK09436        455 CHQSFFLSDQVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFD  533 (819)
T ss_pred             HHHHHhcccccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCC
Confidence            44444  447899999999 9999988876543       233  46655543220000112110  0          11


Q ss_pred             HHH---hhhc--CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC-C--CCh--hHHHHHHHHHhccCCcEEE
Q 020101           91 VAE---AKAE--TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE-G--IPQ--HDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        91 l~d---l~~~--~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~-G--~~e--~~~~~l~~~a~~~~gi~vi  155 (331)
                      +++   +...  .+.|++|.+++.+.......+++++|++. |  |+ .  .+.  +...+|.+.+ +++|..+.
T Consensus       534 ~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~V-V--taNK~~~a~~~~~~~el~~~a-~~~~~~~~  604 (819)
T PRK09436        534 LDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHV-V--TPNKKANTSSYAYYHQLREAA-RKSRRKFL  604 (819)
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEE-E--cCCchhccCCHHHHHHHHHHH-HHcCCeEE
Confidence            222   2221  13589999999988888889999999997 2  33 2  221  3556777777 78887655

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.62  E-value=0.52  Score=41.38  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             CCeEEEEEcCCCCC-CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKN-GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~-G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|+|+|+ |.+ |..++++|.+.|.+++ .+|.+.           +++.+...  +.|++|.+|+...
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~-v~~r~~-----------~~l~~~l~--~aDiVIsat~~~~   99 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNATVT-VCHSKT-----------KNLKEHTK--QADIVIVAVGKPG   99 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCCEEE-EEECCc-----------hhHHHHHh--hCCEEEEcCCCCc
Confidence            5677899999 776 8889999999998755 777542           34556555  6899999998865

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.62  E-value=1.1  Score=45.03  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhhHHH-HHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~-~v~  117 (331)
                      ...+|+|+|+ |.+|+.+++.++..|.+++. -+||...- ....|..+ .+++++.+  ..|++|.++......+ ...
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~--~aDVVI~aTG~~~vI~~~~~  286 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAE--LGDIFVTATGNKDVITAEHM  286 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHh--CCCEEEECCCCHHHHHHHHH
Confidence            3557889999 99999999999999998652 24554310 01236554 35777776  7999999986554433 222


Q ss_pred             HHHHcCCcEEEEecCCCC-hhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          118 EAMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~-e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      +..+.|  .+++....+. |-+...|.+.+   ...+-+.||.-.+.-|+
T Consensus       287 ~~mK~G--ailiNvG~~d~Eid~~~L~~~~---~~~~~v~~~v~~y~~~~  331 (425)
T PRK05476        287 EAMKDG--AILANIGHFDNEIDVAALEELA---VKWREIKPQVDEYTLPD  331 (425)
T ss_pred             hcCCCC--CEEEEcCCCCCccChHHHhhcC---cceeecCCCceEEEeCC
Confidence            333333  3333333332 33444444332   11234567754444443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.46  E-value=0.53  Score=47.07  Aligned_cols=81  Identities=17%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc------e--ecCccccc-C-HHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------E--HLGLPVFN-T-VAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~------~--i~G~p~y~-s-l~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|+|+|+ |+.|...++.|.+.|++++ .++++....      +  -.|+..+. + .++...  ++|++|.++...
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~   79 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVP   79 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCC
Confidence            3466889999 6699999999999999977 777753100      0  01443321 2 223333  689999877544


Q ss_pred             hHHHHHHHHHHcCCc
Q 020101          111 FAAAAILEAMEAELD  125 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~  125 (331)
                      ..-+.+.+|.++|++
T Consensus        80 ~~~~~~~~a~~~~i~   94 (450)
T PRK14106         80 LDSPPVVQAHKKGIE   94 (450)
T ss_pred             CCCHHHHHHHHCCCc
Confidence            444466666666654

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=90.30  E-value=12  Score=32.67  Aligned_cols=88  Identities=14%  Similarity=0.061  Sum_probs=49.5

Q ss_pred             CCCEEEEecCh-HHH----HHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHH
Q 020101          180 PGRIGIVSRSG-TLT----YEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAA  254 (331)
Q Consensus       180 ~G~valisQSG-~~~----~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~  254 (331)
                      ..+|+++.... ...    ..+.+...+.++-+..........  +-++..+...+...|+..+|++...      ..+.
T Consensus       124 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~~~------~~a~  195 (269)
T cd01391         124 WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT--EKGFQALLQLLKAAPKPDAIFACND------EMAA  195 (269)
T ss_pred             CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc--cccHHHHHHHHhcCCCCCEEEEcCc------hHHH
Confidence            45667665544 222    223344455554333333333221  3578888899998888888877644      3566


Q ss_pred             HHHHHhC-CC---CCEEEEEeCCCC
Q 020101          255 ALIKESG-TE---KPIVAFIAGLTA  275 (331)
Q Consensus       255 ~f~~a~r-~~---KPVvv~k~Grs~  275 (331)
                      .++++++ .+   +.+.++-...++
T Consensus       196 ~~~~~~~~~g~~~~~~~ii~~~~~~  220 (269)
T cd01391         196 GALKAAREAGLTPGDISIIGFDGSP  220 (269)
T ss_pred             HHHHHHHHcCCCCCCCEEEeccccc
Confidence            7777665 22   455555444444

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=90.24  E-value=1.6  Score=42.12  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      |...+|+|.|++|-+|+.+++.|.+.|++++...
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~   41 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATL   41 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            5677899999999999999999999999987443

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=90.14  E-value=2  Score=40.90  Aligned_cols=108  Identities=21%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCC--CCCce---e-----cCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTE---H-----LGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~--~~g~~---i-----~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +++|++.|. |..|...++.+.+. ++++++.+|.+  ..|++   +     .|+..-.++++...- .+|.++...-.+
T Consensus         2 ~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt-l~~~~~y~~~~~   79 (350)
T COG3804           2 SLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT-LADAVIYAPLLP   79 (350)
T ss_pred             CceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec-cccceeeecccc
Confidence            456778887 99998888877775 99999876644  33433   2     355555566665542 334444333222


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCC--------CChhHHHHHHHHHhccCCc-EEEc
Q 020101          111 FAAAAILEAMEAELDLVVCITEG--------IPQHDMVRVKAALNNQSKT-RLVG  156 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G--------~~e~~~~~l~~~a~~~~gi-~viG  156 (331)
                      . .+..++|+.+|++. |  ++|        ...+..++..+.| .++|. .+.|
T Consensus        80 ~-~~~y~rlL~aGiNV-v--~~g~~l~yPw~~~PelaeKpl~lA-araGn~Tl~g  129 (350)
T COG3804          80 S-VDEYARLLRAGINV-V--TPGPVLQYPWFYPPELAEKPLELA-ARAGNATLHG  129 (350)
T ss_pred             h-HHHHHHHHHcCCce-e--ccCccccCCCcCChHHhhchHHHH-HhcCCceEEe
Confidence            3 77789999999997 3  342        2345555666666 45554 5655

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=90.13  E-value=0.84  Score=41.15  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=56.3

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCC---------CCCCcccccC
Q 020101          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRR---------MGHAGAIVSG  290 (331)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~---------~sHtga~a~~  290 (331)
                      +.+.|+-+.+||++++|++++.+.|.......++.++++   .+|||+++--|.....|.-         ++.++.+.+-
T Consensus        18 l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~i   97 (207)
T TIGR00706        18 FDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSI   97 (207)
T ss_pred             HHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEee
Confidence            456677788899999999999987666677777777765   3599999998876531111         2222211100


Q ss_pred             C-CCCHHHHHHHHHHcCCe
Q 020101          291 G-KGTAQDKIKTLREAGVT  308 (331)
Q Consensus       291 ~-~g~~~~~~a~~~~aGv~  308 (331)
                      + .....-+..++++.|+-
T Consensus        98 Gv~~~~~~~~~~l~k~Gv~  116 (207)
T TIGR00706        98 GVILQGANVEKLYEKLGIE  116 (207)
T ss_pred             eEEEecCCHHHHHHhCCce
Confidence            0 01223467889999996

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=90.04  E-value=3.6  Score=41.74  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE---------------eCCCCCC--ce---------ec----Cccccc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGG---------------VTPKKGG--TE---------HL----GLPVFN   89 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~---------------VnP~~~g--~~---------i~----G~p~y~   89 (331)
                      .++|+|.|+||.+|+..++.++++  .|++++.               .+|+...  ++         ..    +..++.
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~  136 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP  136 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence            367899999999999999888775  5777753               1222210  00         00    112333


Q ss_pred             ---CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEE
Q 020101           90 ---TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        90 ---sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~vi  155 (331)
                         .+.++....++|+++.++-.-.-..-..+|+++|.+. . ++..-+- .....+.+.+ +++|.+++
T Consensus       137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~V-A-LANKESLV~aG~lI~~~a-k~~~~~Il  203 (454)
T PLN02696        137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDI-A-LANKETLIAGGPFVLPLA-KKHGVKIL  203 (454)
T ss_pred             CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcE-E-EecHHHHHhhHHHHHHHH-HHcCCeEe
Confidence               3555555557899999988876666668889999664 3 3432110 0122344555 56676655

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=89.97  E-value=2.2  Score=40.08  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      ..+|.|.|++|-+|+.+++.|.+.|+++++.+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~   35 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATV   35 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence            45688999999999999999999999977443

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=89.96  E-value=1.1  Score=45.12  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      +.-=|.++.++|+|.|++|-+|+.+++.|.+.|+++++..+
T Consensus       112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr  152 (436)
T PLN02166        112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN  152 (436)
T ss_pred             CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            44446778899999999999999999999999999885433

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.95  E-value=1.4  Score=43.24  Aligned_cols=116  Identities=12%  Similarity=0.063  Sum_probs=62.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|+.-+..||+........+...+-           ...+-..+.++++-|...+.
T Consensus        27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            4567899999 88999999999999986444777765322222222221           11222222355665555444


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ....+.+.+.+ .+...|+..+..+  +....+.+.| +++++.+|--.+.|
T Consensus       106 ~i~~~~~~~~~-~~~DvVvd~~d~~--~~r~~~n~~c-~~~~ip~v~~~~~g  153 (355)
T PRK05597        106 RLTWSNALDEL-RDADVILDGSDNF--DTRHLASWAA-ARLGIPHVWASILG  153 (355)
T ss_pred             ecCHHHHHHHH-hCCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEEEec
Confidence            33333333433 3566655433333  1112233445 67777766544433

>PRK14852 hypothetical protein; Provisional

Probab=89.93  E-value=1.3  Score=48.77  Aligned_cols=118  Identities=16%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..+|.........           |.+--....+...+.++++=|.+.+.
T Consensus       331 ~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~  409 (989)
T PRK14852        331 LRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE  409 (989)
T ss_pred             hcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence            4566889999 77999999999988864333666544311111           22111112222223345555555444


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ....+.+++.+ .++..||.....++.+....+.+.| +++++.+|--.+.|
T Consensus       410 ~I~~en~~~fl-~~~DiVVDa~D~~~~~~rr~l~~~c-~~~~IP~I~ag~~G  459 (989)
T PRK14852        410 GVAAETIDAFL-KDVDLLVDGIDFFALDIRRRLFNRA-LELGIPVITAGPLG  459 (989)
T ss_pred             CCCHHHHHHHh-hCCCEEEECCCCccHHHHHHHHHHH-HHcCCCEEEeeccc
Confidence            44445555544 3566655444444333323444444 56666666444433

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=89.73  E-value=1.2  Score=42.10  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             EEcCCCCCCcHHHHHHHHcC--CeEE
Q 020101           47 CQGITGKNGTFHTEQAIEYG--TKMV   70 (331)
Q Consensus        47 IvGasgk~G~~~~~~l~~~g--~~iv   70 (331)
                      |.|++|-+|+.+++.|++.|  +++.
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr   27 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVR   27 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEE
Confidence            68999999999999999998  5554

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=89.72  E-value=3.8  Score=39.86  Aligned_cols=81  Identities=17%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             CcHHHHHHHHcCCeEEEEeCCCCC--Cc------eecCcccccCHHHhhhcCCCCEEEEecChhhHH-HHHHHHHHcC-C
Q 020101           55 GTFHTEQAIEYGTKMVGGVTPKKG--GT------EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA-AAILEAMEAE-L  124 (331)
Q Consensus        55 G~~~~~~l~~~g~~iv~~VnP~~~--g~------~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~-~~v~~~~~~G-i  124 (331)
                      |+..+++|.+.||++. ..|++..  .+      .-.|....++..++.+  +.|++++++|...+. ++++.++..- -
T Consensus        32 GspMArnLlkAGheV~-V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~~  108 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVV-LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVPE  108 (341)
T ss_pred             HHHHHHHHHHCCCEEE-EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCCC
Confidence            4566789999999976 5555431  01      1247888889999887  789999999988754 5555544432 2


Q ss_pred             cEEEEecCCCChhH
Q 020101          125 DLVVCITEGIPQHD  138 (331)
Q Consensus       125 ~~ivi~t~G~~e~~  138 (331)
                      ..+||-++-.+.+.
T Consensus       109 GaIVID~STIsP~t  122 (341)
T TIGR01724       109 NAVICNTCTVSPVV  122 (341)
T ss_pred             CCEEEECCCCCHHH
Confidence            33444344344443

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=89.70  E-value=0.95  Score=41.62  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      .+.++|+|+|. |+.|+..++.|.+.|.++++..|
T Consensus        29 l~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D   62 (227)
T cd01076          29 LAGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSD   62 (227)
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence            35688999998 99999999999999999886544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.67  E-value=5.8  Score=31.16  Aligned_cols=84  Identities=11%  Similarity=0.052  Sum_probs=49.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc-cCHHHhhhcCCCCEEEEec---ChhhHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-NTVAEAKAETKANASAIYV---PPPFAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y-~sl~dl~~~~~iDlaii~v---p~~~~~~~v~~~  119 (331)
                      +|+|||.-.++-...-+.+.++|++.+.- .++.      |..-. ..+.+...  ++|++|++|   .......+-+.|
T Consensus         1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~------~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~a   71 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDG------GDEKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAA   71 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC------CCccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHH
Confidence            37889964455555666778889986533 2221      11111 12444444  679999877   445566677778


Q ss_pred             HHcCCcEEEEecCCCChhH
Q 020101          120 MEAELDLVVCITEGIPQHD  138 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G~~e~~  138 (331)
                      -+.+++.+.  +.+.+-..
T Consensus        72 kk~~ip~~~--~~~~~~~~   88 (97)
T PF10087_consen   72 KKYGIPIIY--SRSRGVSS   88 (97)
T ss_pred             HHcCCcEEE--ECCCCHHH
Confidence            888888643  44444333

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=89.60  E-value=2.3  Score=38.15  Aligned_cols=99  Identities=13%  Similarity=0.021  Sum_probs=66.5

Q ss_pred             CcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcC-Ce-EEE-----EeCCCCCCcee-cCcccccCHHHhhhc-CCCCEE
Q 020101           33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYG-TK-MVG-----GVTPKKGGTEH-LGLPVFNTVAEAKAE-TKANAS  103 (331)
Q Consensus        33 ~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g-~~-iv~-----~VnP~~~g~~i-~G~p~y~sl~dl~~~-~~iDla  103 (331)
                      |+..=|.-++..+.|+||||-.|+..++.+++.+ |. +++     +++|... +.+ .-..=|..+++.... .++|++
T Consensus         9 klrEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~-k~v~q~~vDf~Kl~~~a~~~qg~dV~   87 (238)
T KOG4039|consen    9 KLREDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD-KVVAQVEVDFSKLSQLATNEQGPDVL   87 (238)
T ss_pred             HHHHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc-ceeeeEEechHHHHHHHhhhcCCceE
Confidence            3444466667778899999999999999998874 54 443     2555442 111 112223446665443 468988


Q ss_pred             EEec---------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 020101          104 AIYV---------------PPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       104 ii~v---------------p~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .-+.               -.+.+....+.|-++|++.+++.++
T Consensus        88 FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS  131 (238)
T KOG4039|consen   88 FCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS  131 (238)
T ss_pred             EEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence            7653               3466788888899999999888776

>PRK06046 alanine dehydrogenase; Validated

Probab=89.58  E-value=0.41  Score=46.32  Aligned_cols=86  Identities=14%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-c----ee---cC--cccccCHHHhhhcCCCCEEEEec
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-T----EH---LG--LPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~----~i---~G--~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+...+|+|+|+ |.+++.+++.+.. .+++.++.+|+.... +    +.   .|  +..|.+++++.+   .|+++.+|
T Consensus       126 ~~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aT  201 (326)
T PRK06046        126 RKDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTT  201 (326)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEec
Confidence            456678999999 9999999988875 477877788887521 1    11   24  345788888874   79999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEE
Q 020101          108 PPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      |... +=.-.+.++.|.+..-+
T Consensus       202 ps~~-P~~~~~~l~~g~hV~~i  222 (326)
T PRK06046        202 PSRK-PVVKAEWIKEGTHINAI  222 (326)
T ss_pred             CCCC-cEecHHHcCCCCEEEec
Confidence            9754 22224445777775444

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=89.58  E-value=2.8  Score=40.51  Aligned_cols=87  Identities=11%  Similarity=0.051  Sum_probs=52.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCC---Cce--------ecC----cccccCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTE--------HLG----LPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~---g~~--------i~G----~p~y~sl~dl~~~~~iDlai  104 (331)
                      |..||+|||+ |.+|..+...+...|+ +++ .+|.+..   ++.        ..+    +....+.+++.   +.|++|
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~-LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~---~aDiVI   79 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA---GSDVVI   79 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEE-EEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC---CCCEEE
Confidence            3468999998 9999988877776775 643 6665442   100        112    22234666653   689999


Q ss_pred             Eec---------------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 020101          105 IYV---------------------PPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       105 i~v---------------------p~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++.                     ..+...++++++.+.+.+.+++..+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s  128 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT  128 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            865                     1122556667777777775444333

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.53  E-value=1.8  Score=41.27  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC---------CCcee--cCc-cccc---CHHHhhhcCCCCEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK---------GGTEH--LGL-PVFN---TVAEAKAETKANASAIY  106 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~---------~g~~i--~G~-p~y~---sl~dl~~~~~iDlaii~  106 (331)
                      +++|+|+|+ |.+|....-.|.+.|.++. .|....         .|-.+  .|- ..++   ...+..  ..+|+++++
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~~V~-lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~--~~~D~viv~   77 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGLPVR-LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA--EPIHRLLLA   77 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCCeE-EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc--cccCEEEEE
Confidence            357899999 9999998888888887755 444421         01011  011 1111   111111  268999999


Q ss_pred             cChhhHHHHHHHHHHc-CC-cEEEEecCCCChhH
Q 020101          107 VPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHD  138 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~~  138 (331)
                      |-.....++++.+... +- ..++.++-|+..++
T Consensus        78 vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e  111 (305)
T PRK05708         78 CKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQD  111 (305)
T ss_pred             CCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence            9998888877766442 22 34566888996544

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=89.52  E-value=1.2  Score=43.60  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCC-------------Cc---e---------ecC--ccccc--C
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG-------------GT---E---------HLG--LPVFN--T   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~-------------g~---~---------i~G--~p~y~--s   90 (331)
                      +||+|-|. |++|+.++|.+.+.   ++++++.-|+...             |+   +         +.|  ++++.  +
T Consensus         2 ~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d   80 (337)
T PRK07403          2 IRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN   80 (337)
T ss_pred             eEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence            68999999 99999999986643   5788844333210             00   0         123  23333  2


Q ss_pred             HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      .++++= +.++|+++.++......+.+...+++|.+.+++
T Consensus        81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i  120 (337)
T PRK07403         81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI  120 (337)
T ss_pred             cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe
Confidence            355542 247999999999999999999999999998665

>PRK14031 glutamate dehydrogenase; Provisional

Probab=89.51  E-value=2.5  Score=42.88  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++
T Consensus       226 l~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVa  256 (444)
T PRK14031        226 LKGKVCLVSGS-GNVAQYTAEKVLELGGKVVT  256 (444)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEE
Confidence            46788999999 99999999999999999884

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.50  E-value=1.2  Score=42.93  Aligned_cols=60  Identities=12%  Similarity=0.062  Sum_probs=48.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +..+|+|||.|+.+|+....+|.+.|+++. ..|.+.  +         +++++..  +.|++|.+++.....+
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t--~---------~l~e~~~--~ADIVIsavg~~~~v~  217 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRS--T---------DAKALCR--QADIVVAAVGRPRLID  217 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhccc
Confidence            456788999988999999999999999877 677553  1         6888776  7899999998765433

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.47  E-value=1.8  Score=41.64  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC------CCce---ecCccccc----CHHHhhhcCCCCEEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTE---HLGLPVFN----TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~------~g~~---i~G~p~y~----sl~dl~~~~~iDlaii~vp~  109 (331)
                      +||.|+|+ |-+|....-.|.+.|..+...+.++.      .|=.   ..+.+.+.    .-.+...  +.|++++++.+
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~--~~Dlviv~vKa   77 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALG--PADLVIVTVKA   77 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcC--CCCEEEEEecc
Confidence            36889999 99999888888888844443344432      1111   12211111    1122222  68999999999


Q ss_pred             hhHHHHHHHHHHcC--CcEEEEecCCCChhH
Q 020101          110 PFAAAAILEAMEAE--LDLVVCITEGIPQHD  138 (331)
Q Consensus       110 ~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~  138 (331)
                      -...++++.....-  -..|+.++.|....+
T Consensus        78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e  108 (307)
T COG1893          78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE  108 (307)
T ss_pred             ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence            99999888877643  334677888987555

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=89.42  E-value=1.1  Score=45.13  Aligned_cols=87  Identities=16%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCc---------ee------------------cC--cccc--cC
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---------EH------------------LG--LPVF--NT   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~---------~i------------------~G--~p~y--~s   90 (331)
                      +||+|.|. |++|+.+.|.+.+ .++++++.-||....+         .+                  .|  ++++  ++
T Consensus        86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d  164 (421)
T PLN02272         86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD  164 (421)
T ss_pred             eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence            59999999 9999999998775 5789885555643211         11                  12  1222  13


Q ss_pred             HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEe
Q 020101           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCI  130 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~  130 (331)
                      +++++- +.++|+++.++......+.+...++.|.|.+||=
T Consensus       165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVId  205 (421)
T PLN02272        165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVIS  205 (421)
T ss_pred             cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEEC
Confidence            444442 2369999999999888888889999999886653

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=89.32  E-value=0.59  Score=45.65  Aligned_cols=59  Identities=10%  Similarity=0.010  Sum_probs=41.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHH--HhhhcCCCCEEEEe
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA--EAKAETKANASAIY  106 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~--dl~~~~~iDlaii~  106 (331)
                      +..+|.|||+ |.||+..+++|.+.|+.-+...|...  ..    .-|..+.  .+.-..+.|++|.+
T Consensus       173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~--~~----~~~~~~~~~~~~~~~~~DvVIs~  233 (338)
T PRK00676        173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ--LT----LPYRTVVREELSFQDPYDVIFFG  233 (338)
T ss_pred             cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc--cc----cchhhhhhhhhhcccCCCEEEEc
Confidence            5678999999 99999999999999976444899886  21    1233321  11111368999986

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.28  E-value=1.5  Score=39.75  Aligned_cols=36  Identities=19%  Similarity=0.086  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |-+|..++++|...|..-+..+|+..
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3456889999 88999999999998876333777764

>PLN02700 homoserine dehydrogenase family protein

Probab=88.92  E-value=1.8  Score=42.95  Aligned_cols=28  Identities=11%  Similarity=-0.059  Sum_probs=25.7

Q ss_pred             CCCEEEEecChhhHHHHHHHHHHcCCcE
Q 020101           99 KANASAIYVPPPFAAAAILEAMEAELDL  126 (331)
Q Consensus        99 ~iDlaii~vp~~~~~~~v~~~~~~Gi~~  126 (331)
                      ..+++|++||.....+...+++++|++.
T Consensus       109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hV  136 (377)
T PLN02700        109 TGLVVVDCSASMETIGALNEAVDLGCCI  136 (377)
T ss_pred             CCCEEEECCCChHHHHHHHHHHHCCCeE
Confidence            4599999999988899999999999997

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=88.76  E-value=1.1  Score=43.51  Aligned_cols=88  Identities=10%  Similarity=-0.138  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCe---EEEEeC-C-CCCCcee--cCcccc-cCHHHhhhcCCCCEEEEecChhhHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTK---MVGGVT-P-KKGGTEH--LGLPVF-NTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~---iv~~Vn-P-~~~g~~i--~G~p~y-~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      ..+|+| ||+|..|+..++.|.+.+|.   +. .++ + ...|+.+  .|.... ..+++-. ..++|+++. .+.+...
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~-l~~s~~~s~gk~i~f~g~~~~V~~l~~~~-f~~vDia~f-ag~~~s~   78 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQIS-IVEIEPFGEEQGIRFNNKAVEQIAPEEVE-WADFNYVFF-AGKMAQA   78 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhhee-ecccccccCCCEEEECCEEEEEEECCccC-cccCCEEEE-cCHHHHH
Confidence            457899 99999999999999988763   33 333 2 3334432  232211 1222211 137999999 9999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCC
Q 020101          114 AAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +....+.++|... |--++-|
T Consensus        79 ~~ap~a~~aG~~V-IDnSsa~   98 (322)
T PRK06901         79 EHLAQAAEAGCIV-IDLYGIC   98 (322)
T ss_pred             HHHHHHHHCCCEE-EECChHh
Confidence            9999999999775 3344434

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=88.69  E-value=3.6  Score=41.81  Aligned_cols=112  Identities=13%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-------CCCCCC-cee---cCcc-cc-cCHHHhhh-----------
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-------TPKKGG-TEH---LGLP-VF-NTVAEAKA-----------   96 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-------nP~~~g-~~i---~G~p-~y-~sl~dl~~-----------   96 (331)
                      +..+|+|.|. |+.|+..++.|.+.|.++++.-       ||+..- +++   ..++ .. .++++.++           
T Consensus       236 ~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~  314 (454)
T PTZ00079        236 EGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGK  314 (454)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCc
Confidence            5678999999 9999999999999999988653       443210 011   0000 00 11122110           


Q ss_pred             ---cCCCCEEEEe-cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101           97 ---ETKANASAIY-VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus        97 ---~~~iDlaii~-vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                         +.++|+++=| +......+.++.+++.+++.|+=.+-+....+..++   . +++|+.++ |.
T Consensus       315 ~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~---L-~~~GI~~~-PD  375 (454)
T PTZ00079        315 KPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHL---F-KKNGVIFC-PG  375 (454)
T ss_pred             CcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHH---H-HHCCcEEE-Ch
Confidence               1467888744 344555677777778899975533333322232222   2 46676655 54

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=88.66  E-value=1.5  Score=41.14  Aligned_cols=31  Identities=19%  Similarity=0.128  Sum_probs=26.0

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      |.|.|++|-+|+.+++.|.+.|++++..++.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~   32 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecC
Confidence            5789999999999999999999976656554

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=88.58  E-value=2.7  Score=41.00  Aligned_cols=123  Identities=20%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEeCCCCCC--ceecC--ccccc-----CHHHhhhcCCCCEEEEecCh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGG--TEHLG--LPVFN-----TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~VnP~~~g--~~i~G--~p~y~-----sl~dl~~~~~iDlaii~vp~  109 (331)
                      +....++|.||+|=.|..+.+.+...|.+ ..++=|+...+  ....|  .++|+     .++++.+  ..++++-|+-|
T Consensus         4 e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~--~~~VVlncvGP   81 (382)
T COG3268           4 EREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS--RTQVVLNCVGP   81 (382)
T ss_pred             CcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh--cceEEEecccc
Confidence            44556788999999999999999988766 44444433210  00112  23343     3667766  78999999977


Q ss_pred             h--hHHHHHHHHHHcCCcEEEEecCCCC-hhHHHHH-HHHHhccCCcEEEccCCCCccc-CCCc
Q 020101          110 P--FAAAAILEAMEAELDLVVCITEGIP-QHDMVRV-KAALNNQSKTRLVGPNCPGVIK-PGEC  168 (331)
Q Consensus       110 ~--~~~~~v~~~~~~Gi~~ivi~t~G~~-e~~~~~l-~~~a~~~~gi~viGPnc~Gi~~-p~~~  168 (331)
                      -  ....+++.|+..|.+.+= +|.-+. -+.+.++ -+.| ++.|++|+  +|-||=+ |..+
T Consensus        82 yt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A-~~~Ga~Ii--~~cGFDsIPsDl  141 (382)
T COG3268          82 YTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQA-ADAGARII--PGCGFDSIPSDL  141 (382)
T ss_pred             ccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHH-HhcCCEEe--ccCCCCcCccch
Confidence            4  457799999999999844 443221 1333344 3345 78999988  3445543 4444

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=88.47  E-value=7.2  Score=33.42  Aligned_cols=102  Identities=17%  Similarity=0.262  Sum_probs=60.2

Q ss_pred             CeEEE--EEcCCC-CCCcHHH-HHHHHcCCeEEEE-eCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh----H
Q 020101           42 NTRVI--CQGITG-KNGTFHT-EQAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF----A  112 (331)
Q Consensus        42 ~~~Va--IvGasg-k~G~~~~-~~l~~~g~~iv~~-VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~----~  112 (331)
                      ..+|.  -+|..| +.|..++ +.|++.||+++++ .....  +++        +....+ +++|++.++.-...    .
T Consensus        12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp--~e~--------v~aA~~-~dv~vIgvSsl~g~h~~l~   80 (143)
T COG2185          12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP--EEA--------VRAAVE-EDVDVIGVSSLDGGHLTLV   80 (143)
T ss_pred             CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH--HHH--------HHHHHh-cCCCEEEEEeccchHHHHH
Confidence            44543  235433 3555555 5566789997631 22111  111        222222 48999999986544    5


Q ss_pred             HHHHHHHHHcCCcEEEEecCCC-ChhHHHHHHHHHhccCCc-EEEccCC
Q 020101          113 AAAILEAMEAELDLVVCITEGI-PQHDMVRVKAALNNQSKT-RLVGPNC  159 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~G~-~e~~~~~l~~~a~~~~gi-~viGPnc  159 (331)
                      +.+++.|.++|...+.++..|. +.++..++     +++|+ ++.+|.+
T Consensus        81 ~~lve~lre~G~~~i~v~~GGvip~~d~~~l-----~~~G~~~if~pgt  124 (143)
T COG2185          81 PGLVEALREAGVEDILVVVGGVIPPGDYQEL-----KEMGVDRIFGPGT  124 (143)
T ss_pred             HHHHHHHHHhCCcceEEeecCccCchhHHHH-----HHhCcceeeCCCC
Confidence            6677888889999887666764 55665544     35664 5888763

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=88.44  E-value=5.1  Score=37.56  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC-CCCceecCcc----cccC--HHHh---hhcCCCCEEEEe
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KGGTEHLGLP----VFNT--VAEA---KAETKANASAIY  106 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~-~~g~~i~G~p----~y~s--l~dl---~~~~~iDlaii~  106 (331)
                      .-..|..||+++||+|-.|+.+++.+.++.|--+.-|.-+ ..|+...+.+    .|.+  ..|+   .+++.+|.++.+
T Consensus        14 ~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvma   93 (340)
T KOG4354|consen   14 VKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMA   93 (340)
T ss_pred             cccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeee
Confidence            3346789999999999999999998888766333344433 2233332221    2222  2222   233578999999


Q ss_pred             cChhhHHHHHHHHHHcCCcEEE
Q 020101          107 VPPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~Gi~~iv  128 (331)
                      .|.......++..-...-|..+
T Consensus        94 LPn~vckpfv~~~~s~~gks~i  115 (340)
T KOG4354|consen   94 LPNQVCKPFVSLTESSDGKSRI  115 (340)
T ss_pred             cchhhHHHHHHHHhhcCCceee
Confidence            9999988888776655545433

>PLN02494 adenosylhomocysteinase

Probab=88.44  E-value=1.4  Score=44.87  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe--CCCCC-CceecCcccccCHHHhhhcCCCCEEEEecChhhHH-HHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKG-GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA-AAIL  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V--nP~~~-g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~-~~v~  117 (331)
                      ..+|+|+|+ |++|+.+++.++.+|.+++ .+  ||... .....|..+. +++++..  ..|+++.++....+. .-.-
T Consensus       254 GKtVvViGy-G~IGr~vA~~aka~Ga~VI-V~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI~~e~L  328 (477)
T PLN02494        254 GKVAVICGY-GDVGKGCAAAMKAAGARVI-VTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDIIMVDHM  328 (477)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccchHHHHH
Confidence            567889999 9999999999999999866 44  55321 0112455544 5778766  689999887765442 2222


Q ss_pred             HHHHcCCcEEEEecCCC-ChhHHHHHHHH
Q 020101          118 EAMEAELDLVVCITEGI-PQHDMVRVKAA  145 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~-~e~~~~~l~~~  145 (331)
                      ++.+.|  .+++....+ .+-+...|.+.
T Consensus       329 ~~MK~G--AiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        329 RKMKNN--AIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             hcCCCC--CEEEEcCCCCCccCHHHHhhc
Confidence            233333  333323333 34455555544

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.32  E-value=0.98  Score=47.42  Aligned_cols=81  Identities=16%  Similarity=0.154  Sum_probs=52.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCccccc-C--HHHhhhc---CCCCEEEEecChhhHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFN-T--VAEAKAE---TKANASAIYVPPPFAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~-s--l~dl~~~---~~iDlaii~vp~~~~~  113 (331)
                      -.|+|+|. |+.|+.+.+.|.+.|++++ .+|.+... +  ...|.++|- |  =.++.++   .+.|++|++++.+..-
T Consensus       401 ~~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n  478 (601)
T PRK03659        401 PQVIIVGF-GRFGQVIGRLLMANKMRIT-VLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT  478 (601)
T ss_pred             CCEEEecC-chHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence            45889999 9999999999999998877 66655410 1  124666553 2  1222221   3689999999886554


Q ss_pred             -HHHHHHHHcCCc
Q 020101          114 -AAILEAMEAELD  125 (331)
Q Consensus       114 -~~v~~~~~~Gi~  125 (331)
                       .++..+.+...+
T Consensus       479 ~~i~~~~r~~~p~  491 (601)
T PRK03659        479 MKIVELCQQHFPH  491 (601)
T ss_pred             HHHHHHHHHHCCC
Confidence             455555555443

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=88.27  E-value=2.2  Score=39.91  Aligned_cols=86  Identities=15%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcc-------cccCHHHhhhcCCCCEEEEecChhh---H
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-------VFNTVAEAKAETKANASAIYVPPPF---A  112 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p-------~y~sl~dl~~~~~iDlaii~vp~~~---~  112 (331)
                      .+|.|+|. ..-|+.+++.|.+.|++++.-|--.+......+.+       -...+.++..+++++++|++|.|-+   .
T Consensus         3 ~~IlvlgG-T~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is   81 (248)
T PRK08057          3 PRILLLGG-TSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQIS   81 (248)
T ss_pred             ceEEEEec-hHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHH
Confidence            45778887 45788899999888987554332212111111222       2345777777789999999998843   4


Q ss_pred             HHHHHHHHHcCCcEEEE
Q 020101          113 AAAILEAMEAELDLVVC  129 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi  129 (331)
                      ..+.+.|.+.|++.+=.
T Consensus        82 ~~a~~ac~~~~ipyiR~   98 (248)
T PRK08057         82 ANAAAACRALGIPYLRL   98 (248)
T ss_pred             HHHHHHHHHhCCcEEEE
Confidence            66778888999988543

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=88.15  E-value=0.71  Score=42.99  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=67.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCC-cee-------cC-ccccc----------CH-H
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEH-------LG-LPVFN----------TV-A   92 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g-~~i-------~G-~p~y~----------sl-~   92 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.       .||+..- +++       .. +.-|+          +- +
T Consensus        30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            46688899999 999999999999999998843       3665310 000       12 23333          11 1


Q ss_pred             HhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC
Q 020101           93 EAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus        93 dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      ++.+ .++|+.+-|- +.....+.+...++.|.|.|+-.+-+....+..++   . +++|+.++ |+
T Consensus       109 ~il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~---L-~~rGI~vi-PD  169 (244)
T PF00208_consen  109 EILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEI---L-RERGILVI-PD  169 (244)
T ss_dssp             HGGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHH---H-HHTT-EEE--H
T ss_pred             cccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHH---H-HHCCCEEE-cc
Confidence            4443 4799999776 44556777776778889986644444322222222   2 57787666 44

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=88.13  E-value=1  Score=47.17  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=51.4

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHHHH---hC-CCCCEEEEEeCCCCCCCCC-C--------CCCccc
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALIKE---SG-TEKPIVAFIAGLTAPPGRR-M--------GHAGAI  287 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~~a---~r-~~KPVvv~k~Grs~~~g~~-~--------sHtga~  287 (331)
                      ++.+.|+...+||++|.|+|.+.+. |.......+..++   .| .+|||+++-.+-+.. +.- +        .++|++
T Consensus        80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~~s~-~YylAs~AD~I~~~p~G~v  158 (584)
T TIGR00705        80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQG-QYYLASFADEIILNPMGSV  158 (584)
T ss_pred             HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccccch-hhhhhhhCCEEEECCCceE
Confidence            4556667788999999999999852 3223333333333   34 689999986544332 221 3        334554


Q ss_pred             ccCCCCC-HHHHHHHHHHcCCeE
Q 020101          288 VSGGKGT-AQDKIKTLREAGVTV  309 (331)
Q Consensus       288 a~~~~g~-~~~~~a~~~~aGv~~  309 (331)
                      ...+-.. ..-+..+|++.||-.
T Consensus       159 ~~~G~~~~~~~~k~~ldKlGV~~  181 (584)
T TIGR00705       159 DLHGFYTETLFYKGMLDKLGVRW  181 (584)
T ss_pred             EeeceecccccHHHHHHHcCCeE
Confidence            3211111 123678999999864

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=88.12  E-value=1.9  Score=42.88  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccC-----------HHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~s-----------l~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+........+...+-+           ..+...+.++++-|...+.
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            4567899999 889999999999988864448887653222222222211           1111222345555544433


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG  161 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~G  161 (331)
                      ....+.+.+.++ +...|+..+..+  +....+.+.| +++++.++--.+.|
T Consensus       120 ~i~~~~~~~~~~-~~D~Vvd~~d~~--~~r~~ln~~~-~~~~~p~v~~~~~g  167 (392)
T PRK07878        120 RLDPSNAVELFS-QYDLILDGTDNF--ATRYLVNDAA-VLAGKPYVWGSIYR  167 (392)
T ss_pred             cCChhHHHHHHh-cCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEEecc
Confidence            333333334332 456544333222  2222344555 56676665444443

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=88.11  E-value=1.9  Score=41.99  Aligned_cols=89  Identities=18%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC-------------Cc---e---------ecC--ccccc--CHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-------------GT---E---------HLG--LPVFN--TVA   92 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~-------------g~---~---------i~G--~p~y~--sl~   92 (331)
                      +||+|-|. |++|+.++|.+.+. ++++++.-|+...             |.   +         +.|  ++++.  +++
T Consensus         3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~   81 (331)
T PRK15425          3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA   81 (331)
T ss_pred             eEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence            68999999 99999999986654 6888854332210             00   0         123  22331  466


Q ss_pred             Hhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        93 dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +++= +.++|+++.++......+.+...+++|.+.|++-++
T Consensus        82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap  122 (331)
T PRK15425         82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP  122 (331)
T ss_pred             hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC
Confidence            6653 247999999999998899999999999998665333

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=88.07  E-value=1.8  Score=40.82  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~  119 (331)
                      +..+++|.|||+.+|+..++.|.+.|++++ .|..+.  +...  ..+..+++--. .++++ .++.+-++....+.++.
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~--~kL~--~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l   78 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGYNLI-LVARRE--DKLE--ALAKELEDKTG-VEVEVIPADLSDPEALERLEDEL   78 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcH--HHHH--HHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHH
Confidence            345677899999999999999999999988 777765  2211  12233333210 12222 23556677888888888


Q ss_pred             HHc--CCcEEEEecCCCC
Q 020101          120 MEA--ELDLVVCITEGIP  135 (331)
Q Consensus       120 ~~~--Gi~~ivi~t~G~~  135 (331)
                      .+.  .|..+|+ ..||.
T Consensus        79 ~~~~~~IdvLVN-NAG~g   95 (265)
T COG0300          79 KERGGPIDVLVN-NAGFG   95 (265)
T ss_pred             HhcCCcccEEEE-CCCcC
Confidence            887  5887554 66653

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=88.06  E-value=1.6  Score=38.77  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      |+|+|++|-.|+.+++.|++.|++++.....
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~   31 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRS   31 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESC
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccc
Confidence            5789999999999999999999997644443

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=87.89  E-value=4.5  Score=38.24  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|+++++.+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~   36 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATV   36 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence            35688999999999999999999999977544

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=87.86  E-value=1.8  Score=42.54  Aligned_cols=86  Identities=13%  Similarity=0.021  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-----CCeEEEEeCCCCCC---------ce-------------------------ec
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGG---------TE-------------------------HL   83 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-----g~~iv~~VnP~~~g---------~~-------------------------i~   83 (331)
                      +||+|-|. |++|+.+.|.+.+.     ++++++..||...-         +.                         +.
T Consensus         4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in   82 (361)
T PTZ00434          4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN   82 (361)
T ss_pred             eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence            68999999 99999999987653     57888666652110         00                         12


Q ss_pred             Cc--ccc---cCHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           84 GL--PVF---NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        84 G~--p~y---~sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      |.  +++   ++.+++|= +.++|+++-||-.-...+-+..-++.|.|.+++
T Consensus        83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii  134 (361)
T PTZ00434         83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI  134 (361)
T ss_pred             CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence            22  233   24666652 247899998887666666666777788888665

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=87.71  E-value=1.3  Score=45.98  Aligned_cols=67  Identities=16%  Similarity=0.260  Sum_probs=44.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecCccccc-C------HHHhhhcCCCCEEEEecChhhHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFN-T------VAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G~p~y~-s------l~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      .|+|+|+ |+.|+.+.+.|.+.|.+++ .||++... +  +..|.+++. +      ++++.- .+.|.++++++.+...
T Consensus       419 hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~~~  495 (558)
T PRK10669        419 HALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSRTRVDELRERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGYEA  495 (558)
T ss_pred             CEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChHHH
Confidence            3678999 9999999999999999877 77766421 0  013444332 2      333222 2689888888875543

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=87.63  E-value=3.2  Score=34.90  Aligned_cols=91  Identities=12%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             CCCcHHHHH-HHHcCCeEEE-EeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh----hhHHHHHHHHHHcCCcE
Q 020101           53 KNGTFHTEQ-AIEYGTKMVG-GVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDL  126 (331)
Q Consensus        53 k~G~~~~~~-l~~~g~~iv~-~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~----~~~~~~v~~~~~~Gi~~  126 (331)
                      ..|..++.. |+..||+++. +++-..          -.-++.+.+ +++|++.++.-.    +..+++++++.+.|...
T Consensus        16 d~g~~iv~~~l~~~GfeVi~lg~~~s~----------e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~   84 (132)
T TIGR00640        16 DRGAKVIATAYADLGFDVDVGPLFQTP----------EEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD   84 (132)
T ss_pred             HHHHHHHHHHHHhCCcEEEECCCCCCH----------HHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC
Confidence            356555544 5557999773 121111          111344443 489999998754    45566667777777644


Q ss_pred             EEEecCC-CChhHHHHHHHHHhccCCc-EEEccCC
Q 020101          127 VVCITEG-IPQHDMVRVKAALNNQSKT-RLVGPNC  159 (331)
Q Consensus       127 ivi~t~G-~~e~~~~~l~~~a~~~~gi-~viGPnc  159 (331)
                      +.++..| .++++.+++     ++.|+ ++++|.+
T Consensus        85 i~vivGG~~~~~~~~~l-----~~~Gvd~~~~~gt  114 (132)
T TIGR00640        85 ILVVVGGVIPPQDFDEL-----KEMGVAEIFGPGT  114 (132)
T ss_pred             CEEEEeCCCChHhHHHH-----HHCCCCEEECCCC
Confidence            4445566 444444443     46787 5888875

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PLN02572 UDP-sulfoquinovose synthase

Probab=87.60  E-value=4.2  Score=40.95  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      +..+|.|.|++|-+|+.+++.|.+.|++++.
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~   76 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAI   76 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence            3456899999999999999999999998773

>PRK10949 protease 4; Provisional

Probab=87.54  E-value=2  Score=45.31  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHHHH---hC-CCCCEEEEEeCCCCCCCCC-CCC--------Cccc
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALIKE---SG-TEKPIVAFIAGLTAPPGRR-MGH--------AGAI  287 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~~a---~r-~~KPVvv~k~Grs~~~g~~-~sH--------tga~  287 (331)
                      ++.+.|+...+||+++.|++.+.+. |.......+..++   .| .+|||+++--.-+.. +.- +||        +|++
T Consensus        99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~~~~~s~-~YyLASaAD~I~l~P~G~v  177 (618)
T PRK10949         99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDSYSQG-QYYLASFANKIYLSPQGVV  177 (618)
T ss_pred             HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecCccch-hhhhhhhCCEEEECCCceE
Confidence            3445556667999999999999986 3333233333333   34 689999984333222 221 333        4444


Q ss_pred             ccCCCC-CHHHHHHHHHHcCCeE
Q 020101          288 VSGGKG-TAQDKIKTLREAGVTV  309 (331)
Q Consensus       288 a~~~~g-~~~~~~a~~~~aGv~~  309 (331)
                      ...+-. ...-+..+|++.||-.
T Consensus       178 ~~~G~~~~~~~~k~lLdKlGV~~  200 (618)
T PRK10949        178 DLHGFATNGLYYKSLLDKLKVST  200 (618)
T ss_pred             EEeeeecchhhHHHHHHHcCCeE
Confidence            322112 2234579999999874

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=87.50  E-value=2.2  Score=41.77  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC----------C---Cc---e---------ecC--cccc--cCHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK----------G---GT---E---------HLG--LPVF--NTVA   92 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~----------~---g~---~---------i~G--~p~y--~sl~   92 (331)
                      +||+|-|. |++|+.++|.+.+. ++++++.-|+..          +   |.   +         +.|  ++++  ++.+
T Consensus         3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~   81 (343)
T PRK07729          3 TKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK   81 (343)
T ss_pred             eEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence            68999999 99999999986654 688884433311          0   00   0         123  2333  2567


Q ss_pred             Hhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        93 dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++= +.++|+++.++......+.+...+++|.+.|++
T Consensus        82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i  119 (343)
T PRK07729         82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL  119 (343)
T ss_pred             hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe
Confidence            7763 247999999999999999999999999998664

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.45  E-value=2.6  Score=36.99  Aligned_cols=33  Identities=18%  Similarity=0.033  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +|+|+|+ |-+|..++++|...|+.-+..+|+..
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4789999 88999999999998885333777654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PTZ00325 malate dehydrogenase; Provisional

Probab=87.42  E-value=3.9  Score=39.66  Aligned_cols=91  Identities=13%  Similarity=-0.005  Sum_probs=54.8

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCC-CCceec------Ccccc--cC---HHHhhhcCCCCEEEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GGTEHL------GLPVF--NT---VAEAKAETKANASAI  105 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~-~g~~i~------G~p~y--~s---l~dl~~~~~iDlaii  105 (331)
                      .|+.||+|+|+.|+.|+.+...+...+  .+++ .+|... .++..+      ...+.  .+   ..+...  +.|++|+
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDvVVi   82 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR--GADLVLI   82 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC--CCCEEEE
Confidence            466789999999999999888777544  4555 555422 221110      11222  11   123333  6899997


Q ss_pred             ecCh--h--------------hHHHHHHHHHHcCCcEEEEecCC
Q 020101          106 YVPP--P--------------FAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       106 ~vp~--~--------------~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      +.-.  .              .+.++++.+.++|++.+++.++.
T Consensus        83 taG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SN  126 (321)
T PTZ00325         83 CAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSN  126 (321)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            7533  1              23446667778899988776653

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=87.41  E-value=17  Score=35.13  Aligned_cols=146  Identities=12%  Similarity=0.051  Sum_probs=84.3

Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChh--HHHHHHHHHhccCCcEEEccCCCC--cccCCCccccc--CCC----
Q 020101          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQH--DMVRVKAALNNQSKTRLVGPNCPG--VIKPGECKIGI--MPG----  175 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~--~~~~l~~~a~~~~gi~viGPnc~G--i~~p~~~~~~~--~~~----  175 (331)
                      ..|++.+..+++++++.|+-.++....+-+..  ....+...+ ...++.+|.|.+-.  +-+.......|  .|.    
T Consensus        63 ~~~~~~a~~~~~~Li~~~V~aii~~~~~ss~~~~~~~~v~~~~-~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~  141 (377)
T cd06379          63 PNPIQTALSVCEQLISNQVYAVIVSHPPTSNDHLTPTSVSYTA-GFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQ  141 (377)
T ss_pred             CChhhHHHHHHHHHhhcceEEEEEeCCCCCcccccHHHHHHHh-hCCCCcEEecccCCccccCccccccEEEecCCHHHH
Confidence            46777778888888887777654312211212  122333444 67889988876422  11111111111  111    


Q ss_pred             --------CCCCCCCEEEEecChHHH----HHHHHHHHhCCC----CceEEEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101          176 --------YIHKPGRIGIVSRSGTLT----YEAVFQTTAVGL----GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGI  239 (331)
Q Consensus       176 --------~~~~~G~valisQSG~~~----~~~~~~~~~~g~----g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I  239 (331)
                              ..+..-.|++|.++...+    ..+...+++.|+    -+......-..   +.++...+..+.. .+.++|
T Consensus       142 ~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~---~~d~~~~l~~ik~-~~~~vI  217 (377)
T cd06379         142 ADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPG---EKNVTSLLQEAKE-LTSRVI  217 (377)
T ss_pred             HHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCc---hhhHHHHHHHHhh-cCCeEE
Confidence                    124556899999987743    344456666776    44444334222   4567778887754 567888


Q ss_pred             EEEEccCCCcHHHHHHHHHHhC
Q 020101          240 ILIGEIGGTAEEDAAALIKESG  261 (331)
Q Consensus       240 ~ly~E~~g~~~~~~~~f~~a~r  261 (331)
                      +++..     ..++..|+++++
T Consensus       218 vl~~~-----~~~~~~l~~qa~  234 (377)
T cd06379         218 LLSAS-----EDDAAVIYRNAG  234 (377)
T ss_pred             EEEcC-----HHHHHHHHHHHH
Confidence            88866     367888998875

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=87.37  E-value=0.6  Score=46.78  Aligned_cols=73  Identities=23%  Similarity=0.305  Sum_probs=49.6

Q ss_pred             cccccCC-CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e---ecCc--ccccCHHHhhhcCCCCEEEEe
Q 020101           34 APAVFVD-KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E---HLGL--PVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        34 l~~ll~~-k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~---i~G~--p~y~sl~dl~~~~~iDlaii~  106 (331)
                      ..++|.+ +..+|.|||| |.||..+++.|.+.|+.-+..+|...... +   -.|.  -.|+.+.+...  +.|+++.+
T Consensus       169 A~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~--~~DvViss  245 (414)
T COG0373         169 AKRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALA--EADVVISS  245 (414)
T ss_pred             HHHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhh--hCCEEEEe
Confidence            3456643 6788999999 99999999999999977555899886311 1   1231  12233444444  68999988


Q ss_pred             cCh
Q 020101          107 VPP  109 (331)
Q Consensus       107 vp~  109 (331)
                      |..
T Consensus       246 Tsa  248 (414)
T COG0373         246 TSA  248 (414)
T ss_pred             cCC
Confidence            754

>PLN02206 UDP-glucuronate decarboxylase

Probab=87.33  E-value=1.9  Score=43.43  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             cCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      +.+|.++|+|.|++|-+|+.+++.|.+.|+++++..
T Consensus       115 ~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld  150 (442)
T PLN02206        115 LKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD  150 (442)
T ss_pred             cccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence            356778999999999999999999999999988443

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=87.27  E-value=1.2  Score=44.64  Aligned_cols=37  Identities=27%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~   76 (331)
                      .+...|.|+||+|+.|+.+.+.|++.||.+.+.|-..
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~  113 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDE  113 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccCh
Confidence            4567789999999999999999999999877555443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=87.22  E-value=2.5  Score=41.30  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .+..+|+|+|+ |-.|...++..+..|.+++ .++.+.
T Consensus       165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Vi-a~~~~~  200 (339)
T COG1064         165 KPGKWVAVVGA-GGLGHMAVQYAKAMGAEVI-AITRSE  200 (339)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHcCCeEE-EEeCCh
Confidence            34677999999 6788888999998999988 555443

>PLN02427 UDP-apiose/xylose synthase

Probab=87.15  E-value=2.9  Score=40.84  Aligned_cols=32  Identities=19%  Similarity=0.160  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGG   72 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~   72 (331)
                      +.++|.|.|++|-+|+.+++.|.+. |+++++.
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l   45 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL   45 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence            4567999999999999999999987 5887743

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.04  E-value=1.6  Score=46.09  Aligned_cols=81  Identities=20%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CC-ceecCccccc-C--HHHhhhc---CCCCEEEEecChhh-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GG-TEHLGLPVFN-T--VAEAKAE---TKANASAIYVPPPF-  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g-~~i~G~p~y~-s--l~dl~~~---~~iDlaii~vp~~~-  111 (331)
                      ..+|+|+|+ |+.|+.+.+.|.+.|++++ .+|.+.  .. -.-.|.++|. +  =.|+.++   .+.|++|++++.+. 
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~  477 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMT-VLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT  477 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence            356889999 9999999999999998876 555443  10 0124666553 2  1122221   36899999987744 


Q ss_pred             HHHHHHHHHHcCC
Q 020101          112 AAAAILEAMEAEL  124 (331)
Q Consensus       112 ~~~~v~~~~~~Gi  124 (331)
                      ...++..+-+...
T Consensus       478 n~~i~~~ar~~~p  490 (621)
T PRK03562        478 SLQLVELVKEHFP  490 (621)
T ss_pred             HHHHHHHHHHhCC
Confidence            4555566655543

>PRK06223 malate dehydrogenase; Reviewed

Probab=86.95  E-value=7.2  Score=37.02  Aligned_cols=84  Identities=14%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCC---Cce--e------cC--ccc--ccCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTE--H------LG--LPV--FNTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~---g~~--i------~G--~p~--y~sl~dl~~~~~iDlaii~  106 (331)
                      .||+|||+ |.+|..+...+...|. +++ .+|....   +..  .      .+  .++  ..+.+++ .  +.|++|++
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~-~--~aDiVii~   77 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDI-A--GSDVVVIT   77 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHH-C--CCCEEEEC
Confidence            57899999 9999998888777654 655 6565331   100  0      01  111  2345554 3  68999988


Q ss_pred             cC--h--------------hhHHHHHHHHHHcCCcEEEEec
Q 020101          107 VP--P--------------PFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       107 vp--~--------------~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      ..  .              +...+++++..+...+.+++..
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~  118 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV  118 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            52  2              3456666666677666644433

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=86.89  E-value=0.89  Score=43.99  Aligned_cols=88  Identities=9%  Similarity=0.005  Sum_probs=58.8

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce-------ecC--cccccCHHHhhhcCCCCEEEEecC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE-------HLG--LPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~-------i~G--~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      .+...+++|||+ |.+++.+++.+.. ..++-+...|+.....+       -.|  +.++.+.+++.+  +.|+++.+||
T Consensus       125 ~~~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~--~aDiVitaT~  201 (325)
T TIGR02371       125 RKDSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVE--GCDILVTTTP  201 (325)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhc--cCCEEEEecC
Confidence            455688999999 9999998887765 34554556676652111       125  345678999887  7999999998


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEe
Q 020101          109 PPFAAAAILEAMEAELDLVVCI  130 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~  130 (331)
                      ... +-+-.+.++.|.+..-+.
T Consensus       202 s~~-P~~~~~~l~~g~~v~~vG  222 (325)
T TIGR02371       202 SRK-PVVKADWVSEGTHINAIG  222 (325)
T ss_pred             CCC-cEecHHHcCCCCEEEecC
Confidence            643 222245567787754443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=86.88  E-value=3.3  Score=39.81  Aligned_cols=233  Identities=21%  Similarity=0.280  Sum_probs=106.5

Q ss_pred             eCCCCCCcee-------cCcccccCHHHhhhcCCCCEEEEecCh------hhHHHHHHHHHHcCCcEEEEecCCCC--hh
Q 020101           73 VTPKKGGTEH-------LGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAILEAMEAELDLVVCITEGIP--QH  137 (331)
Q Consensus        73 VnP~~~g~~i-------~G~p~y~sl~dl~~~~~iDlaii~vp~------~~~~~~v~~~~~~Gi~~ivi~t~G~~--e~  137 (331)
                      +|++..|++.       .|+|+|.++++...  ++|.+|+-+-+      +...+.+.+|+++|... +   +|+-  -+
T Consensus         1 ID~~~aG~~a~e~~~~~~~iPi~~~~~~a~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~I-v---sGLH~~L~   74 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGGKRGIPIVASLEEAAA--GADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDI-V---SGLHDFLS   74 (301)
T ss_dssp             E-TTTTTSBHHHCCSSSS--BEESSHHHHHC--T-SEEEE---STTHCCHCCHHHHHHHHHHTT-EE-E---E-SSS-HC
T ss_pred             CCcccCCCcHHHhcCCCCCCCccCCHHHHhc--CCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCE-E---ecChhhhc
Confidence            3555555443       78999999999943  89999987743      34568999999999886 3   3332  33


Q ss_pred             HHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCC--CCCCCEEEEecCh---HHHHH--HHHHHHhCCCCceE
Q 020101          138 DMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYI--HKPGRIGIVSRSG---TLTYE--AVFQTTAVGLGQST  209 (331)
Q Consensus       138 ~~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~--~~~G~valisQSG---~~~~~--~~~~~~~~g~g~s~  209 (331)
                      +-.++.++| +++|.+++--.-     |. ..  .+..+..  ...=.|..+..+-   =+.++  +...++++|+. +.
T Consensus        75 ddpel~~~A-~~~g~~i~DvR~-----p~~~~--~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~  145 (301)
T PF07755_consen   75 DDPELAAAA-KKNGVRIIDVRK-----PPKDL--PVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AG  145 (301)
T ss_dssp             CHHHHHCCH-HCCT--EEETTS-------SS-------SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EE
T ss_pred             cCHHHHHHH-HHcCCeEeeccC-----CCccc--ccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ce
Confidence            445677766 788988775442     21 11  1111111  1222477776554   34443  45677778764 45


Q ss_pred             EEecCCCC--------CCCCC--------HHHHHHHhhcCCCccEEEEEEccC-CCcHHH--HHHHHHHhCCCCCEEEEE
Q 020101          210 CVGIGGDP--------FNGTN--------FVDCVTKFIADPQTEGIILIGEIG-GTAEED--AAALIKESGTEKPIVAFI  270 (331)
Q Consensus       210 ~vs~Gn~~--------~~~v~--------~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~--~~~f~~a~r~~KPVvv~k  270 (331)
                      |++||...        -.|--        .+.++....+ ++ ..|++-..+. -.+-..  .-.++.-.+...=|++..
T Consensus       146 fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~-d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~  223 (301)
T PF07755_consen  146 FVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EH-DWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHA  223 (301)
T ss_dssp             EEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C--SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEE
T ss_pred             EEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CC-CEEEEeccccccCccccccchhhhccCCCCeEEEEec
Confidence            77777541        01111        1233333443 44 7776655541 111101  123444444555566777


Q ss_pred             eCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeE---------e----CCHhHHHHHHHHHHHhcCCC
Q 020101          271 AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTV---------V----ESPAKIGAAMLEVFKQRGLT  330 (331)
Q Consensus       271 ~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~---------v----~~~~el~~~~~a~~~~~~~~  330 (331)
                      +||..-.+  +-|. .+     -+-+...++.++..-..         .    -+.+|..+.++.+-+++||.
T Consensus       224 p~r~~~~~--~p~~-~i-----p~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e~~~~~~~~~~e~glP  288 (301)
T PF07755_consen  224 PGRKHRDG--FPHY-PI-----PPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEEAKAAIERIEEELGLP  288 (301)
T ss_dssp             TT-SC-TT--STTS-C--------HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHHHHHHHHHHHHHH-S-
T ss_pred             CCcccccC--CCcC-CC-----CCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
Confidence            77765411  2221 11     12233344444444432         1    23456666666655666663

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.75  E-value=5.5  Score=38.77  Aligned_cols=98  Identities=19%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      ....|.|+|+-| +|+...+....+|++++ .++-... +          =+|..+....|.-++++-.....+.+.++.
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~-vis~~~~-k----------keea~~~LGAd~fv~~~~d~d~~~~~~~~~  247 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVT-VISTSSK-K----------KEEAIKSLGADVFVDSTEDPDIMKAIMKTT  247 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEE-EEeCCch-h----------HHHHHHhcCcceeEEecCCHHHHHHHHHhh
Confidence            467789999955 99999999999999988 6664431 1          234444446799999995556666678888


Q ss_pred             HcCCcEEEEecCCCChhHHHHHHHHHhccCC-cEEEc
Q 020101          121 EAELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVG  156 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g-i~viG  156 (331)
                      +-+++.+.++    ++...+.+.+++ |..| +-++|
T Consensus       248 dg~~~~v~~~----a~~~~~~~~~~l-k~~Gt~V~vg  279 (360)
T KOG0023|consen  248 DGGIDTVSNL----AEHALEPLLGLL-KVNGTLVLVG  279 (360)
T ss_pred             cCcceeeeec----cccchHHHHHHh-hcCCEEEEEe
Confidence            9999997776    344445555566 5666 34444

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.70  E-value=1.7  Score=42.78  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..||+..
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~  169 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDV  169 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4567899999 88999999999999985334788764

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.70  E-value=1.1  Score=45.51  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc----eecCcccccC--HHHhhhcCCCCEEEEec
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNT--VAEAKAETKANASAIYV  107 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~----~i~G~p~y~s--l~dl~~~~~iDlaii~v  107 (331)
                      |+.+..-...+|.|+|+ |+.|..+++.|.+.|+++. +.|.+....    +..|++++..  -.+...  ++|++|..-
T Consensus         7 ~~~~~~~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~--~~d~vV~Sp   82 (473)
T PRK00141          7 LSALPQELSGRVLVAGA-GVSGRGIAAMLSELGCDVV-VADDNETARHKLIEVTGVADISTAEASDQLD--SFSLVVTSP   82 (473)
T ss_pred             hhhcccccCCeEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCChHHHHHHHHhcCcEEEeCCCchhHhc--CCCEEEeCC
Confidence            45544334456889998 9999999999999999766 666432101    1236666532  122222  467766542


Q ss_pred             --ChhhHHHHHHHHHHcCCcE
Q 020101          108 --PPPFAAAAILEAMEAELDL  126 (331)
Q Consensus       108 --p~~~~~~~v~~~~~~Gi~~  126 (331)
                        |+ .. ..+.+|.++|++.
T Consensus        83 gi~~-~~-p~~~~a~~~gi~v  101 (473)
T PRK00141         83 GWRP-DS-PLLVDAQSQGLEV  101 (473)
T ss_pred             CCCC-CC-HHHHHHHHCCCce
Confidence              22 22 3455666666643

>PLN02650 dihydroflavonol-4-reductase

Probab=86.65  E-value=4.3  Score=38.99  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      .+.+|+|.|++|-+|+.+++.|.+.|+++++.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~   35 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRAT   35 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence            34578999999999999999999999997743

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.63  E-value=2  Score=41.16  Aligned_cols=76  Identities=11%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +..+|+|||-|+.||+.++.+|.+.|+++. ..|.+.  .         +++++..  +.|+++.+++.....+.  ..+
T Consensus       157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~rT--~---------~l~e~~~--~ADIVIsavg~~~~v~~--~~l  220 (296)
T PRK14188        157 SGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHSRT--R---------DLPAVCR--RADILVAAVGRPEMVKG--DWI  220 (296)
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhhcch--hee
Confidence            567789999999999999999999999877 665332  1         4677776  78999999987664332  224


Q ss_pred             HcCCcEEEEecCCCC
Q 020101          121 EAELDLVVCITEGIP  135 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~  135 (331)
                      +.|.   +++--|++
T Consensus       221 k~Ga---vVIDvGin  232 (296)
T PRK14188        221 KPGA---TVIDVGIN  232 (296)
T ss_pred             cCCC---EEEEcCCc
Confidence            4442   33445654

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=86.42  E-value=2.1  Score=39.38  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      ..+..+|+|||+ |+.+..=++.|++.|.++. .|.|.-
T Consensus        22 ~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~Vt-VVap~i   58 (223)
T PRK05562         22 LSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVY-ILSKKF   58 (223)
T ss_pred             ECCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCCC
Confidence            556788999999 7777666678888898876 888865

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=86.37  E-value=3.4  Score=39.46  Aligned_cols=89  Identities=16%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCCc-----ee--cCccc-------ccCHHHhhhcCCCCEEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGGT-----EH--LGLPV-------FNTVAEAKAETKANASAI  105 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g~-----~i--~G~p~-------y~sl~dl~~~~~iDlaii  105 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|  .+++ .++......     ..  ..+..       ..++.++.+  ++|+++-
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~-~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vih   80 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKII-IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVVH   80 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEE-EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEEE
Confidence            3568899999999999999988765  5666 333211000     00  01111       223445454  6899886


Q ss_pred             ecCh------------------hhHHHHHHHHHHcCCcEEEEecCC
Q 020101          106 YVPP------------------PFAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       106 ~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      +...                  .....+++.|.+.|++.++.+++.
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~  126 (324)
T TIGR03589        81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD  126 (324)
T ss_pred             CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            5321                  124456777888898887777753

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=86.35  E-value=5.7  Score=33.62  Aligned_cols=94  Identities=19%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             CCcHHHH-HHHHcCCeEEE-EeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec----ChhhHHHHHHHHHHcCCcEE
Q 020101           54 NGTFHTE-QAIEYGTKMVG-GVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDLV  127 (331)
Q Consensus        54 ~G~~~~~-~l~~~g~~iv~-~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v----p~~~~~~~v~~~~~~Gi~~i  127 (331)
                      .|..+.. .|++.||+++. +++-..  ++        =++.+.+ +++|++-+..    .-....++++.+-++|.+.+
T Consensus        16 iGk~iv~~~l~~~GfeVi~LG~~v~~--e~--------~v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~   84 (134)
T TIGR01501        16 VGNKILDHAFTNAGFNVVNLGVLSPQ--EE--------FIKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI   84 (134)
T ss_pred             HhHHHHHHHHHHCCCEEEECCCCCCH--HH--------HHHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence            5666554 45567999873 233221  11        1344443 4899877654    23346667777878887444


Q ss_pred             EEecCC---CChhHHHHHHHHHhccCCcE-EEccCC
Q 020101          128 VCITEG---IPQHDMVRVKAALNNQSKTR-LVGPNC  159 (331)
Q Consensus       128 vi~t~G---~~e~~~~~l~~~a~~~~gi~-viGPnc  159 (331)
                      .++-.|   +++++..+..+.+ ++.|+. +.+|.+
T Consensus        85 ~vivGG~~vi~~~d~~~~~~~l-~~~Gv~~vF~pgt  119 (134)
T TIGR01501        85 LLYVGGNLVVGKQDFPDVEKRF-KEMGFDRVFAPGT  119 (134)
T ss_pred             EEEecCCcCcChhhhHHHHHHH-HHcCCCEEECcCC
Confidence            444455   4566655444444 677764 777764

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=86.32  E-value=2.3  Score=38.59  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      +|+|+|++|..|..+++.+.+.|++++ .++.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~-~~~r   32 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVI-ATGR   32 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence            578899999999999999999999976 5544

>PLN02778 3,5-epimerase/4-reductase

Probab=86.29  E-value=3.4  Score=39.11  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMV   70 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv   70 (331)
                      ++.++|.|.|++|-+|+.+.+.|.+.|++++
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~   37 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFH   37 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence            3457899999999999999999999999876

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=86.26  E-value=2.2  Score=42.10  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..+|+..
T Consensus        40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4567899999 88999999999999875333777764

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=86.13  E-value=3.7  Score=38.27  Aligned_cols=92  Identities=15%  Similarity=0.160  Sum_probs=50.6

Q ss_pred             HHHHHHcC--CeEEEEeCCCCCCce---ecCcc--cccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH-cCCcEEEEe
Q 020101           59 TEQAIEYG--TKMVGGVTPKKGGTE---HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAAAILEAME-AELDLVVCI  130 (331)
Q Consensus        59 ~~~l~~~g--~~iv~~VnP~~~g~~---i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~-~Gi~~ivi~  130 (331)
                      .+.|++.|  ++++ ++|++....+   -.|+-  .+.+.+. ..  +.|++|+++|.+...+++++... .+...+|.=
T Consensus         2 A~aL~~~g~~~~v~-g~d~~~~~~~~a~~~g~~~~~~~~~~~-~~--~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    2 ALALRKAGPDVEVY-GYDRDPETLEAALELGIIDEASTDIEA-VE--DADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHTTTTSEEE-EE-SSHHHHHHHHHTTSSSEEESHHHH-GG--CCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE
T ss_pred             hHHHHhCCCCeEEE-EEeCCHHHHHHHHHCCCeeeccCCHhH-hc--CCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEE
Confidence            45677777  5566 8887652111   13432  3334344 44  68999999999999999999988 445554543


Q ss_pred             cCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          131 TEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       131 t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ..+....-...+.+..  ..+.+++|
T Consensus        78 v~SvK~~~~~~~~~~~--~~~~~~v~  101 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLL--PEGVRFVG  101 (258)
T ss_dssp             --S-CHHHHHHHHHHH--TSSGEEEE
T ss_pred             eCCCCHHHHHHHHHhc--Ccccceee
Confidence            3444443344444443  24566664

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK12483 threonine dehydratase; Reviewed

Probab=86.13  E-value=3.9  Score=42.29  Aligned_cols=159  Identities=19%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCcccC
Q 020101           88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKP  165 (331)
Q Consensus        88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~~p  165 (331)
                      |..+..+.++....-+|-++....++.+.-.|...|++..+++..+.++.-...+     +.+|  +.+.|++.-.-+.-
T Consensus        73 ~n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~-----r~~GAeVil~g~~~d~a~~~  147 (521)
T PRK12483         73 YNKMARLPAEQLARGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGV-----RAHGGEVVLHGESFPDALAH  147 (521)
T ss_pred             HHHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHH-----HHCCCEEEEECCCHHHHHHH
Confidence            3345544432123446778888999999999999999998888878764433222     4555  44456542211111


Q ss_pred             C-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceE-EEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101          166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQST-CVGIGGDPFNGTNFVDCVTKFIADPQTEGI  239 (331)
Q Consensus       166 ~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~-~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I  239 (331)
                      . .+    ...+.+.+ ..+-.++  .| |+++.++++....   .+.+ ++++|+-. .-.+++-++..+  .|++|+|
T Consensus       148 A~~la~e~g~~~v~pf-dd~~via--Gq-gTig~EI~eQ~~~---~~D~VvvpvGgGG-liaGia~~~K~~--~p~vkVI  217 (521)
T PRK12483        148 ALKLAEEEGLTFVPPF-DDPDVIA--GQ-GTVAMEILRQHPG---PLDAIFVPVGGGG-LIAGIAAYVKYV--RPEIKVI  217 (521)
T ss_pred             HHHHHHhcCCeeeCCC-CChHHHH--HH-HHHHHHHHHHhCC---CCCEEEEecCccH-HHHHHHHHHHHh--CCCCEEE
Confidence            1 00    01111110 0111121  34 8888888766531   2443 55666531 012334444433  5899999


Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 020101          240 ILIGEIGGTAEEDAAALIKESGTEKPIVA  268 (331)
Q Consensus       240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv  268 (331)
                      ++--|.-       ..+..+.+.+||+.+
T Consensus       218 GVep~~a-------~~~~~sl~~g~~~~~  239 (521)
T PRK12483        218 GVEPDDS-------NCLQAALAAGERVVL  239 (521)
T ss_pred             EEEeCCC-------chhhHHHhcCCcccC
Confidence            9987751       234445556777644

>PRK04148 hypothetical protein; Provisional

Probab=86.12  E-value=6.2  Score=33.43  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=52.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCCCCCCc-eecCcccc-cCH----HHhhhcCCCCEEEEecCh-hhH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGT-EHLGLPVF-NTV----AEAKAETKANASAIYVPP-PFA  112 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP~~~g~-~i~G~p~y-~sl----~dl~~~~~iDlaii~vp~-~~~  112 (331)
                      +..+|++||+ | .|..+...|.+.|+++++. +||..... ...+..++ .++    -++-+  +.|++.-..|| +.+
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~--~a~liysirpp~el~   91 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYK--NAKLIYSIRPPRDLQ   91 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHh--cCCEEEEeCCCHHHH
Confidence            4567999999 7 8877888899999998843 55543100 01122222 111    12222  68988866655 566


Q ss_pred             HHHHHHHHHcCCcEEE
Q 020101          113 AAAILEAMEAELDLVV  128 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~iv  128 (331)
                      +.+++-+-+.|...++
T Consensus        92 ~~~~~la~~~~~~~~i  107 (134)
T PRK04148         92 PFILELAKKINVPLII  107 (134)
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            6677777778888744

>PRK08177 short chain dehydrogenase; Provisional

Probab=86.11  E-value=2.6  Score=37.56  Aligned_cols=78  Identities=12%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHHHHc
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~~~~  122 (331)
                      +|+|.|+++.+|+.+++.|.+.|++++ .++.+.  +...      .+.+...   +. ...+..-.+...++++++.+.
T Consensus         3 ~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~------~~~~~~~---~~~~~~D~~d~~~~~~~~~~~~~~   70 (225)
T PRK08177          3 TALIIGASRGLGLGLVDRLLERGWQVT-ATVRGP--QQDT------ALQALPG---VHIEKLDMNDPASLDQLLQRLQGQ   70 (225)
T ss_pred             EEEEeCCCchHHHHHHHHHHhCCCEEE-EEeCCC--cchH------HHHhccc---cceEEcCCCCHHHHHHHHHHhhcC
Confidence            478899999999999999999999877 555433  1110      1111111   11 112334555666666666555


Q ss_pred             CCcEEEEecCCC
Q 020101          123 ELDLVVCITEGI  134 (331)
Q Consensus       123 Gi~~ivi~t~G~  134 (331)
                      ++..++. ..|.
T Consensus        71 ~id~vi~-~ag~   81 (225)
T PRK08177         71 RFDLLFV-NAGI   81 (225)
T ss_pred             CCCEEEE-cCcc
Confidence            6777554 4443

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=85.98  E-value=4.1  Score=37.79  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=26.3

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      |.|.|++|-.|+.+++.|.+.|++++ +++.
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~-~~~r   32 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVR-GLDR   32 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEE-EEeC
Confidence            78899999999999999999999988 5553

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=85.97  E-value=1.7  Score=44.31  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-EeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ...+|+|+|. |++|+.+++.++.+|.+++. -.+|...- ....|... .+++++.+  ..|+++.++....
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~--~ADIVI~atGt~~  321 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVE--TADIFVTATGNKD  321 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHh--cCCEEEECCCccc
Confidence            3456889999 99999999999999998652 24654410 01245543 36888877  7899999876433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.84  E-value=2.7  Score=41.87  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=53.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCccccc-------CHHHhhhcCCCCEEEEecChhhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFN-------TVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~-------sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +|+|+|+ |++|+.+++.|.+.|++++ .++++... ++   ..|++++.       .++++.- .+.|.++++++.+..
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~~   78 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDET   78 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChHH
Confidence            6889999 9999999999999899877 66654310 11   13444332       2333311 268999999987665


Q ss_pred             HHHH-HHHHHc-CCcEEEEec
Q 020101          113 AAAI-LEAMEA-ELDLVVCIT  131 (331)
Q Consensus       113 ~~~v-~~~~~~-Gi~~ivi~t  131 (331)
                      -..+ ..+.+. +...+++-+
T Consensus        79 n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         79 NMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             HHHHHHHHHHhcCCCeEEEEE
Confidence            4433 444454 666656543

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=85.74  E-value=6.3  Score=37.13  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCeEEE---E-eCCCCCCcee---------cCc---ccccCHHHhhhcCCCCEE-EEecChh---hHHHHHH
Q 020101           58 HTEQAIEYGTKMVG---G-VTPKKGGTEH---------LGL---PVFNTVAEAKAETKANAS-AIYVPPP---FAAAAIL  117 (331)
Q Consensus        58 ~~~~l~~~g~~iv~---~-VnP~~~g~~i---------~G~---p~y~sl~dl~~~~~iDla-ii~vp~~---~~~~~v~  117 (331)
                      .++.+.+.|.+++-   | =||-.+|..|         .|.   .++..++++.++.++-++ .-+-.+=   -..+.++
T Consensus        34 ~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~  113 (263)
T CHL00200         34 ALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIK  113 (263)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHH
Confidence            35667777776553   2 5899888654         243   355556666543344433 3333432   3466899


Q ss_pred             HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      +|.+.|+.++++  +..+.++..++.+.+ +++|+.
T Consensus       114 ~~~~aGvdgvii--pDLP~ee~~~~~~~~-~~~gi~  146 (263)
T CHL00200        114 KISQAGVKGLII--PDLPYEESDYLISVC-NLYNIE  146 (263)
T ss_pred             HHHHcCCeEEEe--cCCCHHHHHHHHHHH-HHcCCC
Confidence            999999999887  777777777888887 788865

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=85.62  E-value=12  Score=33.08  Aligned_cols=60  Identities=8%  Similarity=-0.003  Sum_probs=31.3

Q ss_pred             CCEEEEecChH--H----HHHHHHHHHhCCCCc--eEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 020101          181 GRIGIVSRSGT--L----TYEAVFQTTAVGLGQ--STCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILI  242 (331)
Q Consensus       181 G~valisQSG~--~----~~~~~~~~~~~g~g~--s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly  242 (331)
                      ++|++++.+..  .    ...+.+.+++.+..+  ...+......  +.....+-+++...|...+|+..
T Consensus       117 ~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~  184 (264)
T cd06267         117 RRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSE--ESGYEAARELLASGERPTAIFAA  184 (264)
T ss_pred             ceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccch--hhHHHHHHHHHhcCCCCcEEEEc
Confidence            45666654432  1    122345555565433  2233322221  33455566788888888887765

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>PLN02591 tryptophan synthase

Probab=85.60  E-value=21  Score=33.34  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCeEEE---E-eCCCCCCcee---------cCc---ccccCHHHhhhcCCCCEE-EEecChh---hHHHHHH
Q 020101           58 HTEQAIEYGTKMVG---G-VTPKKGGTEH---------LGL---PVFNTVAEAKAETKANAS-AIYVPPP---FAAAAIL  117 (331)
Q Consensus        58 ~~~~l~~~g~~iv~---~-VnP~~~g~~i---------~G~---p~y~sl~dl~~~~~iDla-ii~vp~~---~~~~~v~  117 (331)
                      +++.+.+.|.+++-   | =||-.+|..|         .|.   .++..++++-++.++-++ .-+-++=   -..+.++
T Consensus        21 ~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~  100 (250)
T PLN02591         21 ALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMA  100 (250)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHH
Confidence            45667777776543   2 5898887654         243   244455555433334433 3333432   3466899


Q ss_pred             HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      +|.+.|+.++++  +..+.++..++.+.+ +++|+..|
T Consensus       101 ~~~~aGv~Gvii--pDLP~ee~~~~~~~~-~~~gl~~I  135 (250)
T PLN02591        101 TIKEAGVHGLVV--PDLPLEETEALRAEA-AKNGIELV  135 (250)
T ss_pred             HHHHcCCCEEEe--CCCCHHHHHHHHHHH-HHcCCeEE
Confidence            999999999887  788878888888887 88887644

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=85.39  E-value=0.79  Score=45.98  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=47.2

Q ss_pred             ccc-CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecC-cc--cccCHHHhhhcCCCCEEEEec
Q 020101           36 AVF-VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLG-LP--VFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        36 ~ll-~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G-~p--~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+| ..+..+|+|+|+ |.+|+.++++|.+.|..-+..+|.+... ..   ..+ ..  -|.++.+...  +.|++|.+|
T Consensus       174 ~~~~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~--~aDiVI~aT  250 (414)
T PRK13940        174 RQLDNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIK--KADIIIAAV  250 (414)
T ss_pred             HHhcCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhc--cCCEEEECc
Confidence            344 235677999999 9999999999999997645589987521 11   112 11  1233444444  689999888


Q ss_pred             Chh
Q 020101          108 PPP  110 (331)
Q Consensus       108 p~~  110 (331)
                      +..
T Consensus       251 ~a~  253 (414)
T PRK13940        251 NVL  253 (414)
T ss_pred             CCC
Confidence            753

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=85.38  E-value=2.9  Score=37.02  Aligned_cols=52  Identities=10%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEe---CCCC
Q 020101          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIA---GLTA  275 (331)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~---Grs~  275 (331)
                      +.+.|+.+.+|+ .+.|++++.+.|-....+.+++.+++ ..||||++..   |...
T Consensus        18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa   73 (187)
T cd07020          18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAA   73 (187)
T ss_pred             HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence            566777787776 89999999987766788888888876 7899999886   6654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=85.37  E-value=6  Score=37.37  Aligned_cols=36  Identities=17%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-eCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTP   75 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-VnP   75 (331)
                      ++..+|+|.|++|-+|+.+++.|.+.|++++.. .++
T Consensus         3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~   39 (325)
T PLN02989          3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP   39 (325)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            345678899999999999999999999997632 354

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=85.33  E-value=6.2  Score=37.63  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      +..+|.|.|++|-+|+.+.+.|.+.|++++..
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~   36 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGI   36 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence            34578899999999999999999999997743

>PRK05993 short chain dehydrogenase; Provisional

Probab=85.19  E-value=3.5  Score=38.17  Aligned_cols=77  Identities=21%  Similarity=0.280  Sum_probs=49.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE-EEecChhhHHHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS-AIYVPPPFAAAAILEAME  121 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla-ii~vp~~~~~~~v~~~~~  121 (331)
                      ..|+|.|+++.+|+.+++.+.+.|++++ .++.+.  +.         ++++.+. .++.. .+.+..+....+++++.+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~~Vi-~~~r~~--~~---------~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~   71 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGWRVF-ATCRKE--ED---------VAALEAE-GLEAFQLDYAEPESIAALVAQVLE   71 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECCH--HH---------HHHHHHC-CceEEEccCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999977 444432  11         2232221 23333 355667777777777755


Q ss_pred             c---CCcEEEEecCC
Q 020101          122 A---ELDLVVCITEG  133 (331)
Q Consensus       122 ~---Gi~~ivi~t~G  133 (331)
                      .   .+..++. ..|
T Consensus        72 ~~~g~id~li~-~Ag   85 (277)
T PRK05993         72 LSGGRLDALFN-NGA   85 (277)
T ss_pred             HcCCCccEEEE-CCC
Confidence            3   4676554 444

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=85.15  E-value=8.2  Score=35.92  Aligned_cols=90  Identities=12%  Similarity=0.064  Sum_probs=54.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC-Cc--eecCcc--cccCHHHhhhc-CCCCEEEEecChhh-HH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GT--EHLGLP--VFNTVAEAKAE-TKANASAIYVPPPF-AA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~-g~--~i~G~p--~y~sl~dl~~~-~~iDlaii~vp~~~-~~  113 (331)
                      ...++.|+|+ |..++.+.+.....||+++ .+||+.. -.  ...+..  .+...++.... ..-+.+++.|.... =.
T Consensus        99 p~~~L~IfGa-G~va~~la~la~~lGf~V~-v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D~  176 (246)
T TIGR02964        99 PAPHVVLFGA-GHVGRALVRALAPLPCRVT-WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHALDL  176 (246)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhcCCCEEE-EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChHHHH
Confidence            3567889999 8889999999999999987 8888752 00  011111  11223333221 13467777776444 45


Q ss_pred             HHHHHHH-HcCCcEEEEecC
Q 020101          114 AAILEAM-EAELDLVVCITE  132 (331)
Q Consensus       114 ~~v~~~~-~~Gi~~ivi~t~  132 (331)
                      ++++.++ +.....+=++-+
T Consensus       177 ~~L~~aL~~~~~~YIG~lGS  196 (246)
T TIGR02964       177 ELCHAALRRGDFAYFGLIGS  196 (246)
T ss_pred             HHHHHHHhCCCCcEEEEeCC
Confidence            6677777 455666555443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.03  E-value=3.3  Score=39.49  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +..+|+|||-|+-+|+-+..+|.+.|++++ ..+.+.           +++++...  +.|++|.+++.....+  .+.+
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~t-----------~~l~~~~~--~ADIVI~avg~~~~v~--~~~i  220 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSRT-----------RNLAEVAR--KADILVVAIGRGHFVT--KEFV  220 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHh--hCCEEEEecCccccCC--HHHc
Confidence            557789999999999999999999999866 444332           15777766  7899999998766543  2334


Q ss_pred             HcCCcEEEEecCCCC
Q 020101          121 EAELDLVVCITEGIP  135 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~  135 (331)
                      +.|  . +++--|++
T Consensus       221 k~G--a-vVIDvgin  232 (284)
T PRK14179        221 KEG--A-VVIDVGMN  232 (284)
T ss_pred             cCC--c-EEEEecce
Confidence            544  2 33444553

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=84.98  E-value=9.1  Score=35.57  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=23.9

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCC
Q 020101           45 VICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKK   77 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~   77 (331)
                      |+|||++|.+|..++..+...+    .+++ .+|.+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~-L~D~~~   36 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELV-LYDIDE   36 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEE-EEeCCc
Confidence            4689998889998888877766    4555 666554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN00203 glutamyl-tRNA reductase

Probab=84.95  E-value=0.69  Score=47.76  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      ..+|+|||+ |.||+.+++.|...|.+-+..+|++.
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~  300 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSE  300 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            567899999 99999999999988875344788875

>PRK05086 malate dehydrogenase; Provisional

Probab=84.91  E-value=5.6  Score=38.26  Aligned_cols=88  Identities=13%  Similarity=0.070  Sum_probs=53.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-c--CCeEEEEe--CCCCCCce--ec--C--ccc----ccCHHHhhhcCCCCEEEEec
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-Y--GTKMVGGV--TPKKGGTE--HL--G--LPV----FNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~--g~~iv~~V--nP~~~g~~--i~--G--~p~----y~sl~dl~~~~~iDlaii~v  107 (331)
                      +||+|+||+|+.|+.++..+.. .  +.+++ .+  |+...|..  +.  +  ..+    -.++.+...  +.|++|++.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~-L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIita   77 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELS-LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISA   77 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEE-EEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcC
Confidence            3689999999999998877644 3  34444 43  44332111  11  1  111    124333333  689999887


Q ss_pred             Ch--h--------------hHHHHHHHHHHcCCcEEEEecCC
Q 020101          108 PP--P--------------FAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       108 p~--~--------------~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      -.  .              ...++++.+.+.+.+.+++..+.
T Consensus        78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN  119 (312)
T PRK05086         78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN  119 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            43  1              45567777888898887776654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=84.90  E-value=5.8  Score=38.43  Aligned_cols=26  Identities=23%  Similarity=0.148  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG   66 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g   66 (331)
                      |+.||+|||++|+.|..++-.+...+
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~   26 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGE   26 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence            35689999999999998877666544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09291 short chain dehydrogenase; Provisional

Probab=84.65  E-value=6.8  Score=35.32  Aligned_cols=29  Identities=14%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      +|+|.|++|.+|+.+++.|.+.|+++++.
T Consensus         4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~   32 (257)
T PRK09291          4 TILITGAGSGFGREVALRLARKGHNVIAG   32 (257)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            57889999999999999999999998743

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=84.61  E-value=5.3  Score=38.27  Aligned_cols=84  Identities=15%  Similarity=0.136  Sum_probs=51.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCC---Ccee-----------cC-cccccCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTEH-----------LG-LPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~---g~~i-----------~G-~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      .+|+|||+ |.+|..++..+...|. +++ .+|....   |+..           .+ +....+++++ .  +.|++|++
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~-~--~aDiVIit   76 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADT-A--NSDIVVIT   76 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHh-C--CCCEEEEc
Confidence            47899999 9999998888877665 654 6665431   1100           01 1222456664 3  68999998


Q ss_pred             cCh----------------hhHHHHHHHHHHcCCcEEEEec
Q 020101          107 VPP----------------PFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       107 vp~----------------~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      .+.                +.+.+++++..+.+-+.++++-
T Consensus        77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~  117 (305)
T TIGR01763        77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVV  117 (305)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            873                2344566666666655544433

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=84.42  E-value=4  Score=39.15  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT   74 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~Vn   74 (331)
                      ++|+|.|++|-.|+.+++.|.+. |++++ +++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~-~~~   33 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVY-GMD   33 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEE-EEe
Confidence            36889999999999999999875 68887 444

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.36  E-value=6.1  Score=39.33  Aligned_cols=86  Identities=17%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c----eecCcccc-c---CHHHhhhc--CCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T----EHLGLPVF-N---TVAEAKAE--TKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~----~i~G~p~y-~---sl~dl~~~--~~iDlaii~vp~~  110 (331)
                      ..+|+|+|+ |+.|+.+++.|.+.|++++ .|+..... +    ...+.+++ -   +.+.+.+.  .+.|+++++++.+
T Consensus       231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~-vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVK-LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            466899999 9999999999999899876 66443210 0    11233332 1   22222111  3689998888764


Q ss_pred             hH-HHHHHHHHHcCCcEEEE
Q 020101          111 FA-AAAILEAMEAELDLVVC  129 (331)
Q Consensus       111 ~~-~~~v~~~~~~Gi~~ivi  129 (331)
                      .. ......|.+.+++.++.
T Consensus       309 ~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        309 EANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             HHHHHHHHHHHHhCCCeEEE
Confidence            33 22334455667776554

>PRK07411 hypothetical protein; Validated

Probab=84.27  E-value=4.5  Score=40.20  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG   78 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~   78 (331)
                      +..+|+|||+ |-.|..++++|...|+.-+..||+...
T Consensus        37 ~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~v   73 (390)
T PRK07411         37 KAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVV   73 (390)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEe
Confidence            4567899999 889999999999999864447887654

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.10  E-value=4.6  Score=35.85  Aligned_cols=34  Identities=12%  Similarity=0.070  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      ..+|+|+|+||.+|+.+++.+.+.|++++..+..
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~   39 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRS   39 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            3578899999999999999999999987633443

>PLN02550 threonine dehydratase

Probab=84.10  E-value=5.9  Score=41.66  Aligned_cols=209  Identities=18%  Similarity=0.146  Sum_probs=108.5

Q ss_pred             ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCC--cEEEccCCCCcccC
Q 020101           88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKP  165 (331)
Q Consensus        88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g--i~viGPnc~Gi~~p  165 (331)
                      |..+..+..+..-.-+|.++...+++.+.-.|...|++..|++..+.++.-...+     +.+|  +.+.|.+.-.-..-
T Consensus       145 ~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~-----r~~GAeVvl~g~~~dea~~~  219 (591)
T PLN02550        145 YNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSV-----ERLGATVVLVGDSYDEAQAY  219 (591)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-----HHcCCEEEEeCCCHHHHHHH
Confidence            3345555332122235667788889999999999999998888777764433222     4455  45566442211110


Q ss_pred             C-Cc----ccccCCCCCCCCCCEEEE-ecChHHHHHHHHHHHhCCCCce-EEEecCCCCCCCCCHHHHHHHhhcCCCccE
Q 020101          166 G-EC----KIGIMPGYIHKPGRIGIV-SRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIADPQTEG  238 (331)
Q Consensus       166 ~-~~----~~~~~~~~~~~~G~vali-sQSG~~~~~~~~~~~~~g~g~s-~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~  238 (331)
                      . .+    ...|...  +  .+-.+| .| |+++.++++....   .+- -++.+|+-. .-.+++-++..+  .|++|+
T Consensus       220 A~~la~e~g~~fi~p--f--ddp~viaGq-gTig~EI~eQl~~---~~D~VvvpVGgGG-LiaGia~~lK~l--~p~vkV  288 (591)
T PLN02550        220 AKQRALEEGRTFIPP--F--DHPDVIAGQ-GTVGMEIVRQHQG---PLHAIFVPVGGGG-LIAGIAAYVKRV--RPEVKI  288 (591)
T ss_pred             HHHHHHhcCCEEECC--C--CChHHHHHH-HHHHHHHHHHcCC---CCCEEEEEeChhH-HHHHHHHHHHHh--CCCCEE
Confidence            0 00    0112111  1  111222 34 7888888766532   244 366666642 012344445444  699999


Q ss_pred             EEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q 020101          239 IILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGA  318 (331)
Q Consensus       239 I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~  318 (331)
                      |++--|.       +..+..+.+.+||+..=....-.. |..-.    ..    | +..++.+-+-.+-++.=+-+|..+
T Consensus       289 IGVEp~~-------a~~~~~s~~~G~~v~~~~~~tiAd-Giav~----~~----G-~~t~~i~~~~vD~vV~Vsd~eI~~  351 (591)
T PLN02550        289 IGVEPSD-------ANAMALSLHHGERVMLDQVGGFAD-GVAVK----EV----G-EETFRLCRELVDGVVLVSRDAICA  351 (591)
T ss_pred             EEEEECC-------ChHHHHHHhcCCccccCCCCCccc-eeecC----CC----C-HHHHHHHHhhCCEEEEECHHHHHH
Confidence            9998775       234555666778765422221111 21100    01    2 233443333344445556777788


Q ss_pred             HHHHHHHhcCC
Q 020101          319 AMLEVFKQRGL  329 (331)
Q Consensus       319 ~~~a~~~~~~~  329 (331)
                      +++.+++.-++
T Consensus       352 Ai~~l~e~~gi  362 (591)
T PLN02550        352 SIKDMFEEKRS  362 (591)
T ss_pred             HHHHHHHHCCC
Confidence            87777765543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=84.07  E-value=1.1  Score=44.89  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .+..+|+|+|+ |.+|+.+++.+...|.+-+..+|++.
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            35578999999 99999999999988985333777764

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=83.95  E-value=2.2  Score=44.76  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=54.0

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK  258 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~  258 (331)
                      ..+.|++|.-+|.+...-       +    ..-.+|.     -++.+.|+.+.+||++|+|+|.+.+.|-.........+
T Consensus       306 ~~~~vavI~~~G~I~~~~-------~----~~~~~~~-----~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~  369 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGR-------D----TEGNTGG-----DTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR  369 (584)
T ss_pred             CCCeEEEEEEEEEEcCCC-------C----cccccCH-----HHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence            467899999988874211       1    0001122     24678889999999999999999986543333333333


Q ss_pred             Hh---C-CCCCEEEEEeCCCCC
Q 020101          259 ES---G-TEKPIVAFIAGLTAP  276 (331)
Q Consensus       259 a~---r-~~KPVvv~k~Grs~~  276 (331)
                      ++   | .+||||++..|....
T Consensus       370 ~i~~~~~~gKPVva~~~g~aaS  391 (584)
T TIGR00705       370 ELARAQARGKPVIVSMGAMAAS  391 (584)
T ss_pred             HHHHHHhCCCcEEEEECCcccc
Confidence            33   3 569999998886554

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK12828 short chain dehydrogenase; Provisional

Probab=83.90  E-value=6.4  Score=34.78  Aligned_cols=82  Identities=20%  Similarity=0.138  Sum_probs=48.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE-EEecChhhHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS-AIYVPPPFAAAAILEAM  120 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla-ii~vp~~~~~~~v~~~~  120 (331)
                      ..+|+|.|++|.+|+.+++.+.+.|++++ .++.+.. +.      -..+.++... ..+++ .+....+....+++++.
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~~v~-~~~r~~~-~~------~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~   77 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGARVA-LIGRGAA-PL------SQTLPGVPAD-ALRIGGIDLVDPQAARRAVDEVN   77 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCCeEE-EEeCChH-hH------HHHHHHHhhc-CceEEEeecCCHHHHHHHHHHHH
Confidence            45688999999999999999999999976 5554331 10      0112222211 22222 23445566666666665


Q ss_pred             Hc--CCcEEEEecCC
Q 020101          121 EA--ELDLVVCITEG  133 (331)
Q Consensus       121 ~~--Gi~~ivi~t~G  133 (331)
                      +.  ++..++ ...|
T Consensus        78 ~~~~~~d~vi-~~ag   91 (239)
T PRK12828         78 RQFGRLDALV-NIAG   91 (239)
T ss_pred             HHhCCcCEEE-ECCc
Confidence            53  577755 4444

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=83.90  E-value=6.5  Score=37.62  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=26.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      .+|+|.|++|-+|+.+++.|.+.|++++..++
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~   33 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVD   33 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            36889999999999999999998887553444

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=83.73  E-value=4.7  Score=40.64  Aligned_cols=82  Identities=9%  Similarity=0.109  Sum_probs=49.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEE-Ee--CCCCCCceecC------cccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GV--TPKKGGTEHLG------LPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~-~V--nP~~~g~~i~G------~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ++||.|+|. |.-...+...+++.|+++++ +.  ||..  ..+..      ..-++.+.++.+++++|++|...-...+
T Consensus         2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~   78 (435)
T PRK06395          2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA   78 (435)
T ss_pred             ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence            468999998 54445666778888887554 34  4442  11111      1112233344445679999877544456


Q ss_pred             HHHHHHHHHcCCcE
Q 020101          113 AAAILEAMEAELDL  126 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~  126 (331)
                      ...++++.+.|++.
T Consensus        79 ~~~~~~l~~~Gi~v   92 (435)
T PRK06395         79 TPLVNNLLKRGIKV   92 (435)
T ss_pred             HHHHHHHHHCCCcE
Confidence            66677777888775

>PRK07340 ornithine cyclodeaminase; Validated

Probab=83.70  E-value=0.62  Score=44.65  Aligned_cols=86  Identities=13%  Similarity=-0.006  Sum_probs=57.2

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce-----e--cCccc-ccCHHHhhhcCCCCEEEEecCh
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE-----H--LGLPV-FNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~-----i--~G~p~-y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      .++..+++|+|+ |.+++.+++.+.. .+.+-+...|+.....+     .  .+.++ +.+++++..  +.|+++.+||.
T Consensus       122 ~~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~--~aDiVitaT~s  198 (304)
T PRK07340        122 PAPPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPE--AVDLVVTATTS  198 (304)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhh--cCCEEEEccCC
Confidence            346678999999 9999999998865 57665557777642111     1  12232 467887776  79999999987


Q ss_pred             hhHHHHHHHHHHcCCcEEEE
Q 020101          110 PFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      ..  .+++..++.|.+..-+
T Consensus       199 ~~--Pl~~~~~~~g~hi~~i  216 (304)
T PRK07340        199 RT--PVYPEAARAGRLVVAV  216 (304)
T ss_pred             CC--ceeCccCCCCCEEEec
Confidence            65  4444445666655333

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=83.64  E-value=4.1  Score=34.41  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecC---cccccCHHHhhh--cCCCCEEEEec-ChhhHHHHHHH
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLG---LPVFNTVAEAKA--ETKANASAIYV-PPPFAAAAILE  118 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G---~p~y~sl~dl~~--~~~iDlaii~v-p~~~~~~~v~~  118 (331)
                      ++|+|+ |..++.+++.....||+++ .+||+.  +....   +.+.+ .+++.+  +.+.+.+|+.+ ..+.=.++++.
T Consensus         1 L~I~Ga-G~va~al~~la~~lg~~v~-v~d~r~--e~~~~~~~~~~~~-~~~~~~~~~~~~~t~Vv~th~h~~D~~~L~~   75 (136)
T PF13478_consen    1 LVIFGA-GHVARALARLAALLGFRVT-VVDPRP--ERFPEADEVICIP-PDDILEDLEIDPNTAVVMTHDHELDAEALEA   75 (136)
T ss_dssp             EEEES--STCHHHHHHHHHHCTEEEE-EEES-C--CC-TTSSEEECSH-HHHHHHHC-S-TT-EEE--S-CCCHHHHHHH
T ss_pred             CEEEeC-cHHHHHHHHHHHhCCCEEE-EEcCCc--cccCCCCccEecC-hHHHHhccCCCCCeEEEEcCCchhHHHHHHH
Confidence            367999 9999999999999999988 899886  32211   22222 222211  11233333444 44566678888


Q ss_pred             HHHcCCcEEEEec
Q 020101          119 AMEAELDLVVCIT  131 (331)
Q Consensus       119 ~~~~Gi~~ivi~t  131 (331)
                      +++.+.+.+-++.
T Consensus        76 ~l~~~~~YiG~lG   88 (136)
T PF13478_consen   76 ALASPARYIGLLG   88 (136)
T ss_dssp             HTTSS-SEEEESS
T ss_pred             HHcCCCCEEEeec
Confidence            8888877766544

>PRK06182 short chain dehydrogenase; Validated

Probab=83.51  E-value=6.9  Score=35.91  Aligned_cols=79  Identities=13%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~~  120 (331)
                      ...++|.|+++.+|+.+.+.+.+.|++++ .++.+.  +.         ++++... +++. ..+.+.++.....++++.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~   69 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVY-GAARRV--DK---------MEDLASL-GVHPLSLDVTDEASIKAAVDTII   69 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence            34678899999999999999999999977 444332  11         2222221 2333 335667777777777766


Q ss_pred             Hc--CCcEEEEecCCC
Q 020101          121 EA--ELDLVVCITEGI  134 (331)
Q Consensus       121 ~~--Gi~~ivi~t~G~  134 (331)
                      +.  ++..+++ ..|+
T Consensus        70 ~~~~~id~li~-~ag~   84 (273)
T PRK06182         70 AEEGRIDVLVN-NAGY   84 (273)
T ss_pred             HhcCCCCEEEE-CCCc
Confidence            54  5777554 5554

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=83.43  E-value=4.2  Score=39.41  Aligned_cols=90  Identities=12%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----------ecCcc-----------------------
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----------HLGLP-----------------------   86 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----------i~G~p-----------------------   86 (331)
                      ++.-|+|||| |..|+.+.+.|.+.|.+-+-.||+....-.           .-|.|                       
T Consensus        73 ~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~  151 (430)
T KOG2018|consen   73 TNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM  151 (430)
T ss_pred             cCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence            3456889999 899999999999988764447787653210           01222                       


Q ss_pred             ccc--CHHHhhhcCCCCEEEEecCh-hhHHHHHHHHHHcCCcEEEEecCCC
Q 020101           87 VFN--TVAEAKAETKANASAIYVPP-PFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus        87 ~y~--sl~dl~~~~~iDlaii~vp~-~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .|+  +=+|+.. -+||.+++|.-. +.-.+.++.|..+|++.+  -+.|.
T Consensus       152 l~~~~s~edll~-gnPdFvvDciDNidtKVdLL~y~~~~~l~Vi--ss~Ga  199 (430)
T KOG2018|consen  152 LWTSSSEEDLLS-GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVI--SSTGA  199 (430)
T ss_pred             hcCCCchhhhhc-CCCCeEeEhhhhhhhhhHHHHHHHHcCCceE--eccCc
Confidence            121  2333332 269999999965 667899999999999973  45553

>PRK10433 putative RNA methyltransferase; Provisional

Probab=83.43  E-value=19  Score=33.16  Aligned_cols=64  Identities=16%  Similarity=0.070  Sum_probs=40.7

Q ss_pred             CeEEEEEcCC--CCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e-----------ecCcccccCHHHhhhcCCCCEEEEec
Q 020101           42 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E-----------HLGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        42 ~~~VaIvGas--gk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~-----------i~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .++|+++...  +|+| .++|.+.++|+.-+..|||+.... +           +...++|+++++...  +.+.++-++
T Consensus         2 ~i~vVLv~p~~p~NiG-aiaRam~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~--d~~~vigtt   78 (228)
T PRK10433          2 RLTIILVAPARAENVG-AAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALH--DVDFTVATT   78 (228)
T ss_pred             ceEEEEEcCCCCccHH-HHHHHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEECCHHHHHH--hCCeEEEEc
Confidence            3678888863  3444 467899999997444899984211 1           234567777777776  566555444


Q ss_pred             C
Q 020101          108 P  108 (331)
Q Consensus       108 p  108 (331)
                      .
T Consensus        79 a   79 (228)
T PRK10433         79 A   79 (228)
T ss_pred             c
Confidence            3

>PRK09186 flagellin modification protein A; Provisional

Probab=83.42  E-value=3.7  Score=37.08  Aligned_cols=85  Identities=12%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~~  120 (331)
                      ..+|+|.|+++.+|+.+++.|.+.|++++ .++.+.  +...  ....++........++. ..+.+.++...++++++.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~~v~-~~~r~~--~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGGIVI-AADIDK--EALN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA   78 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEE-EEecCh--HHHH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999977 454432  1110  01111111111112333 335566677777777665


Q ss_pred             Hc--CCcEEEEec
Q 020101          121 EA--ELDLVVCIT  131 (331)
Q Consensus       121 ~~--Gi~~ivi~t  131 (331)
                      +.  ++..++..+
T Consensus        79 ~~~~~id~vi~~A   91 (256)
T PRK09186         79 EKYGKIDGAVNCA   91 (256)
T ss_pred             HHcCCccEEEECC
Confidence            42  366655433

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=83.40  E-value=4.2  Score=39.21  Aligned_cols=87  Identities=15%  Similarity=0.245  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecC--ccccc-------CHHHhhhcCCCCEEEEecChhh-
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLG--LPVFN-------TVAEAKAETKANASAIYVPPPF-  111 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G--~p~y~-------sl~dl~~~~~iDlaii~vp~~~-  111 (331)
                      +|.|.|..|=+|+-....|++.|++++ .+|--..|.  .+.-  .+.|.       -++++.++++||.+|=|..-.. 
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V   80 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV   80 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Confidence            578898878899888899999999977 544322221  1222  23332       3777888889999997643332 


Q ss_pred             -----------------HHHHHHHHHHcCCcEEEEecC
Q 020101          112 -----------------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       112 -----------------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                       ....++.|.+.||+.+| |++
T Consensus        81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~v-FSS  117 (329)
T COG1087          81 GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI-FSS  117 (329)
T ss_pred             chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEE-Eec
Confidence                             34467889999999955 775

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=83.35  E-value=1.6  Score=45.92  Aligned_cols=177  Identities=12%  Similarity=-0.036  Sum_probs=102.0

Q ss_pred             ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHH-HHHHHHhccCCc-EEEccCC
Q 020101           82 HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMV-RVKAALNNQSKT-RLVGPNC  159 (331)
Q Consensus        82 i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~-~l~~~a~~~~gi-~viGPnc  159 (331)
                      ..|-+.+...+.+.+  .-+-+..+++.....-.-..+....++.-+-+++++..+.-+ .+...+ +..++ .++.=.|
T Consensus       307 n~Gg~gvla~D~l~~--~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~-~~~~~~~llvi~~  383 (598)
T COG1042         307 NGGGPGVLAADALEE--RGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILL-RDENVDALLVIVL  383 (598)
T ss_pred             cCCCccccchhHHHH--cCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHH-hccCCceEEEEec
Confidence            456777777777765  223332232222222222223345677767777887765433 222222 33332 2222222


Q ss_pred             CCcccCC----CcccccCCCCCCCCCCEEEEecChHHHHHH-HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCC
Q 020101          160 PGVIKPG----ECKIGIMPGYIHKPGRIGIVSRSGTLTYEA-VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADP  234 (331)
Q Consensus       160 ~Gi~~p~----~~~~~~~~~~~~~~G~valisQSG~~~~~~-~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp  234 (331)
                      .+.....    ...+.+   .....|+..+++|.|+..... .....++|++++.....++.+  ...+.++..|+..+.
T Consensus       384 ~~~~~~~~~~a~~~~~~---~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~a--~~~l~~~~~~~~~~~  458 (598)
T COG1042         384 PPASADPEETAEAIIRA---TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVKA--LSALARYRRWLKKLR  458 (598)
T ss_pred             CCCCCCchhhhHHHHHh---hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHHH--HHHHHHHHHHHHhhc
Confidence            2211111    111111   335778999999999943333 356778999999999999998  788999999999999


Q ss_pred             CccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCC--CCCCcccc
Q 020101          235 QTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR--MGHAGAIV  288 (331)
Q Consensus       235 ~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~~g~~--~sHtga~a  288 (331)
                      .|    .|.|+.                 ++..+.+.++++. ..+  .+|+...+
T Consensus       459 ~~----~~~~~~-----------------~~~~~~~~e~~~~-l~~~gi~~~~~~~  492 (598)
T COG1042         459 ET----PVFEGG-----------------GGTTLDEPEAKEL-LEAYGIPVPATIA  492 (598)
T ss_pred             cC----cccccC-----------------CccccCchhhhhH-HHHhcCccccccc
Confidence            98    236651                 5666777666665 222  56766644

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=83.34  E-value=3.4  Score=40.44  Aligned_cols=32  Identities=16%  Similarity=0.035  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP   75 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP   75 (331)
                      +||+|-|. |++|+.++|.+.+. ++++++.-||
T Consensus         3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd~   35 (342)
T PTZ00353          3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVNDA   35 (342)
T ss_pred             eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecCC
Confidence            68999999 99999999986654 6888854444

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=83.21  E-value=3.2  Score=38.79  Aligned_cols=194  Identities=15%  Similarity=0.162  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC----------ceecCcc-cccCHHHhhhcCCCCEEEEecChhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG----------TEHLGLP-VFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g----------~~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++|.|+|. ..-|+.+++.|.+.|+ ++..|--.+.+          ....|-- -...+.++..++++|++|++|.|-+
T Consensus         1 m~ILvlgG-TtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA   78 (249)
T PF02571_consen    1 MKILVLGG-TTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA   78 (249)
T ss_pred             CEEEEEec-hHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence            36788887 4578889999999887 44333222211          1222322 3345777777779999999998843


Q ss_pred             ---HHHHHHHHHHcCCcEEEEecCCCCh---------hHHHHHHHHHhccC-C-c-EEEccCCCCcccC-C--Cccc--c
Q 020101          112 ---AAAAILEAMEAELDLVVCITEGIPQ---------HDMVRVKAALNNQS-K-T-RLVGPNCPGVIKP-G--ECKI--G  171 (331)
Q Consensus       112 ---~~~~v~~~~~~Gi~~ivi~t~G~~e---------~~~~~l~~~a~~~~-g-i-~viGPnc~Gi~~p-~--~~~~--~  171 (331)
                         ...+.+.|.+.||+.+=.--+....         ++.+++.+.+.+.. + + --+|-+.+--+.+ .  +.++  =
T Consensus        79 ~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~R  158 (249)
T PF02571_consen   79 AEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFAR  158 (249)
T ss_pred             HHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEE
Confidence               5667788889999885433232211         12344444442222 2 2 2446665554422 1  1111  1


Q ss_pred             cCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 020101          172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (331)
Q Consensus       172 ~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (331)
                      ..|.    +-.                   +.|+....++..-+-    .+.. +=..|..+-+..++ +-=|+++.  .
T Consensus       159 vLp~----~~~-------------------~~g~~~~~iia~~GP----fs~e-~n~al~~~~~i~~l-VtK~SG~~--g  207 (249)
T PF02571_consen  159 VLPT----PES-------------------ALGFPPKNIIAMQGP----FSKE-LNRALFRQYGIDVL-VTKESGGS--G  207 (249)
T ss_pred             ECCC----ccc-------------------cCCCChhhEEEEeCC----CCHH-HHHHHHHHcCCCEE-EEcCCCch--h
Confidence            1121    111                   346666666655543    1222 22334444555554 34566543  2


Q ss_pred             HHHHHHHHhC-CCCCEEEEE
Q 020101          252 DAAALIKESG-TEKPIVAFI  270 (331)
Q Consensus       252 ~~~~f~~a~r-~~KPVvv~k  270 (331)
                      ...| ++|++ .+.|||++|
T Consensus       208 ~~eK-i~AA~~lgi~vivI~  226 (249)
T PF02571_consen  208 FDEK-IEAARELGIPVIVIK  226 (249)
T ss_pred             hHHH-HHHHHHcCCeEEEEe
Confidence            3334 45555 999999998

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=83.17  E-value=2.9  Score=36.22  Aligned_cols=53  Identities=21%  Similarity=0.154  Sum_probs=43.5

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~  275 (331)
                      +.+-|.++..++.++.|.+|+.+.|-....+.....+++ .++||+++..|...
T Consensus        17 ~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aa   70 (162)
T cd07013          17 FAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAA   70 (162)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehh
Confidence            456677888999999999999998777888888888887 67899988777654

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=83.15  E-value=8.6  Score=37.28  Aligned_cols=26  Identities=23%  Similarity=0.148  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG   66 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g   66 (331)
                      +..||+||||+|+.|+..+-.+...+
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~   27 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGE   27 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence            46889999999999998887766554

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=83.10  E-value=2.9  Score=36.84  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+++|+|++|.+|+...+.+.+.|.+++ .++++.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~~   62 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRDL   62 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence            456789999999999999999988888766 666653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08264 short chain dehydrogenase; Validated

Probab=83.08  E-value=7.1  Score=34.80  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTP   75 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP   75 (331)
                      +..+|+|.|+||.+|+.+++.|.+.|. +++ .+..
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~-~~~r   39 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVY-AAAR   39 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEE-EEec
Confidence            345688999999999999999999998 665 5443

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.07  E-value=3.4  Score=41.72  Aligned_cols=78  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc------e--ecCcccccC---HHHhhhcCCCCEEEEecCh-h
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------E--HLGLPVFNT---VAEAKAETKANASAIYVPP-P  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~------~--i~G~p~y~s---l~dl~~~~~iDlaii~vp~-~  110 (331)
                      .+|.|+|. |+.|..+++.|.+.|+++. +.|.+....      .  -.|+.++..   .+.+ .  ++|++|+. |. .
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~--~~dlVV~S-pgi~   88 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-D--GFDVIFKT-PSMR   88 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-c--cCCEEEEC-CCCC
Confidence            46888999 9999999999999999876 666432101      0  136555421   2333 3  58987765 42 2


Q ss_pred             hHHHHHHHHHHcCCcE
Q 020101          111 FAAAAILEAMEAELDL  126 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~  126 (331)
                      ..-+.+.+|.+.|++.
T Consensus        89 ~~~p~~~~a~~~~i~i  104 (458)
T PRK01710         89 IDSPELVKAKEEGAYI  104 (458)
T ss_pred             CCchHHHHHHHcCCcE
Confidence            2335667777777664

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=82.78  E-value=11  Score=38.88  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE--EEccCCCCcccC
Q 020101           88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKP  165 (331)
Q Consensus        88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~--viGPnc~Gi~~p  165 (331)
                      |..+..+..+....-+|-++.....+.+.-.|...|++.++++..+.++.-..    .. +.+|..  +.|.+.-.-..-
T Consensus        53 ~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~----~~-r~~GA~Vvl~g~~~d~a~~~  127 (499)
T TIGR01124        53 YNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVD----AV-RGFGGEVVLHGANFDDAKAK  127 (499)
T ss_pred             HHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HH-HhCCCEEEEeCcCHHHHHHH
Confidence            44455553332345677788889999999999999999988777666543222    22 456644  445332111110


Q ss_pred             C-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceE-EEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101          166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQST-CVGIGGDPFNGTNFVDCVTKFIADPQTEGI  239 (331)
Q Consensus       166 ~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~-~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I  239 (331)
                      . .+    ...+.+    +-.+...+.--|+++.++++...   ..+.+ ++++|+-. .-.+++-++..+  .|++|+|
T Consensus       128 a~~la~~~g~~~i~----p~~~~~~i~G~gtig~EI~~q~~---~~~D~vvvpvGgGG-liaGia~~lk~~--~p~~kVI  197 (499)
T TIGR01124       128 AIELSQEKGLTFIH----PFDDPLVIAGQGTLALEILRQVA---NPLDAVFVPVGGGG-LAAGVAALIKQL--MPEIKVI  197 (499)
T ss_pred             HHHHHHhcCCEeeC----CCCChHHHHhhHHHHHHHHHhCC---CCCCEEEEccCccH-HHHHHHHHHHHh--CCCCEEE
Confidence            0 00    011111    11122222223888888876543   23454 55555531 012334444433  6889999


Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 020101          240 ILIGEIGGTAEEDAAALIKESGTEKPIVA  268 (331)
Q Consensus       240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv  268 (331)
                      ++--|.       ...+..+.+.++|+-.
T Consensus       198 gVep~~-------~~~~~~s~~~g~~~~~  219 (499)
T TIGR01124       198 GVEPTD-------SDCMKQALDAGEPVDL  219 (499)
T ss_pred             EEEECC-------ChHHHHHHhcCCceeC
Confidence            988775       1234455556777653

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=82.76  E-value=4.3  Score=35.90  Aligned_cols=51  Identities=12%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101          224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~  275 (331)
                      .+.|+...+++ .+.|++++.+.|-......+..+.++ ..|||+++..|...
T Consensus        19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~Aa   70 (178)
T cd07021          19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAA   70 (178)
T ss_pred             HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchH
Confidence            34455556676 89999999998877888999988887 77999999988755

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PRK10949 protease 4; Provisional

Probab=82.65  E-value=2.8  Score=44.26  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=69.4

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK  258 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~  258 (331)
                      ..+.||+|.-+|.+...-      ...|     .+|     .-++.+.|+...+||++|+|+|.+.+.|-.........+
T Consensus       324 ~~~~Iavi~~~G~I~~g~------~~~g-----~~~-----~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~  387 (618)
T PRK10949        324 TGGSIAVIFANGAIMDGE------ETPG-----NVG-----GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA  387 (618)
T ss_pred             CCCeEEEEEEEEEEcCCC------CcCC-----CcC-----HHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence            356799999999884310      0001     112     224678899999999999999999987654444444444


Q ss_pred             Hh---C-CCCCEEEEEeCCCCCCCC-------C-----CCCCcccccCCCCCHHHHHHHHHHcCCe
Q 020101          259 ES---G-TEKPIVAFIAGLTAPPGR-------R-----MGHAGAIVSGGKGTAQDKIKTLREAGVT  308 (331)
Q Consensus       259 a~---r-~~KPVvv~k~Grs~~~g~-------~-----~sHtga~a~~~~g~~~~~~a~~~~aGv~  308 (331)
                      ++   | .+||||+.-.+-...+|.       +     .+=|||+.-  -+....+..++++.||-
T Consensus       388 ~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV--~~~~~~~~~ll~klGV~  451 (618)
T PRK10949        388 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGI--FGVINTVENSLDSIGVH  451 (618)
T ss_pred             HHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcE--EEEccCHHHHHHhcCCc
Confidence            44   3 679999987665443211       1     122555430  01233467789999975

>PRK09224 threonine dehydratase; Reviewed

Probab=82.59  E-value=9.2  Score=39.38  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=84.1

Q ss_pred             ccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE--EEccCCCCcccC
Q 020101           88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKP  165 (331)
Q Consensus        88 y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~--viGPnc~Gi~~p  165 (331)
                      |..+..+.++....-+|.++.....+.+.-.|...|++.++++....+..-..    .. +..|..  +.|.+.-.-+.-
T Consensus        56 ~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~----~~-r~~GA~Vi~~g~~~~~a~~~  130 (504)
T PRK09224         56 YNKMAQLTEEQLARGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVD----AV-RAFGGEVVLHGDSFDEAYAH  130 (504)
T ss_pred             HHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HH-HhCCCEEEEECCCHHHHHHH
Confidence            44455554332345678888888999999999999999988777665533222    22 456644  445331100000


Q ss_pred             C-Cc----ccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCce-EEEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 020101          166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIADPQTEGI  239 (331)
Q Consensus       166 ~-~~----~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s-~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I  239 (331)
                      . .+    ...+.+    +-.+..++.--|+++.++++....   .+. -++++|+-. .-.+++.++..+  .|+||+|
T Consensus       131 a~~l~~~~g~~~v~----~f~~~~~i~G~gTi~~EI~~q~~~---~~D~vvvpvGgGG-liaGia~~lk~~--~p~~kVi  200 (504)
T PRK09224        131 AIELAEEEGLTFIH----PFDDPDVIAGQGTIAMEILQQHPH---PLDAVFVPVGGGG-LIAGVAAYIKQL--RPEIKVI  200 (504)
T ss_pred             HHHHHHhcCCEEeC----CCCCcHHHHhHHHHHHHHHHhccC---CCCEEEEecChhH-HHHHHHHHHHHh--CCCCEEE
Confidence            0 00    011111    111222232237888887765431   244 366666631 012233344433  5899999


Q ss_pred             EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 020101          240 ILIGEIGGTAEEDAAALIKESGTEKPIVA  268 (331)
Q Consensus       240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv  268 (331)
                      ++--|..       ..+..+.+.++|+..
T Consensus       201 gVe~~~~-------~~~~~s~~~g~~~~~  222 (504)
T PRK09224        201 GVEPEDS-------ACLKAALEAGERVDL  222 (504)
T ss_pred             EEEECCC-------hHHHHHHhcCCCccC
Confidence            9887751       234445556677543

>PRK06141 ornithine cyclodeaminase; Validated

Probab=82.57  E-value=2  Score=41.26  Aligned_cols=81  Identities=12%  Similarity=0.074  Sum_probs=53.1

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-ce----e--cC--cccccCHHHhhhcCCCCEEEEecC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H--LG--LPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~~----i--~G--~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      .++..+|+|+|+ |.+|+.+++.+.. .+.+-+...|+.... +.    .  .|  +.++.++++...  +.|+++.+||
T Consensus       122 ~~~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~--~aDIVi~aT~  198 (314)
T PRK06141        122 RKDASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVR--QADIISCATL  198 (314)
T ss_pred             CCCCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHh--cCCEEEEeeC
Confidence            456788999998 9999999886655 465433377775421 11    1  13  456678888776  7899988888


Q ss_pred             hhhHHHHH-HHHHHcCC
Q 020101          109 PPFAAAAI-LEAMEAEL  124 (331)
Q Consensus       109 ~~~~~~~v-~~~~~~Gi  124 (331)
                      ..  ..++ .+.++.|.
T Consensus       199 s~--~pvl~~~~l~~g~  213 (314)
T PRK06141        199 ST--EPLVRGEWLKPGT  213 (314)
T ss_pred             CC--CCEecHHHcCCCC
Confidence            65  2323 34556666

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=82.46  E-value=4.5  Score=39.61  Aligned_cols=88  Identities=15%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--CCceecC----cccccC---HHHhhhcCCCCEEE
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEHLG----LPVFNT---VAEAKAETKANASA  104 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--~g~~i~G----~p~y~s---l~dl~~~~~iDlai  104 (331)
                      |..-+.|+..+|.|+|+ |..|+.+.+.+.+.|++++ .+++..  .+.....    .+ +.+   +.++.++.++|+++
T Consensus         4 ~~~~~~~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~-~~~~~~~~~~~~~ad~~~~~~-~~d~~~l~~~~~~~~id~vi   80 (395)
T PRK09288          4 LGTPLSPSATRVMLLGS-GELGKEVAIEAQRLGVEVI-AVDRYANAPAMQVAHRSHVID-MLDGDALRAVIEREKPDYIV   80 (395)
T ss_pred             ccCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCCchHHhhhheEECC-CCCHHHHHHHHHHhCCCEEE
Confidence            45556678889999998 7777777888888899876 444432  1111111    11 223   44444445789877


Q ss_pred             EecChhhHHHHHHHHHHcCCc
Q 020101          105 IYVPPPFAAAAILEAMEAELD  125 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~  125 (331)
                      ... .+.....+.++.+.|++
T Consensus        81 ~~~-e~~~~~~~~~l~~~g~~  100 (395)
T PRK09288         81 PEI-EAIATDALVELEKEGFN  100 (395)
T ss_pred             Eee-CcCCHHHHHHHHhcCCe
Confidence            443 23223445566666655

>PRK12827 short chain dehydrogenase; Provisional

Probab=82.40  E-value=3.9  Score=36.51  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      +.+++|.|+++-+|+.+++.|.+.|++++ .++
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~~v~-~~~   37 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGADVI-VLD   37 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEc
Confidence            45688999999999999999999999976 544

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=82.38  E-value=2.6  Score=41.50  Aligned_cols=110  Identities=20%  Similarity=0.244  Sum_probs=67.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc----CCe-EEEEeCCCCCCce--ecCccc-----------c-----cCHHHhhhcC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY----GTK-MVGGVTPKKGGTE--HLGLPV-----------F-----NTVAEAKAET   98 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~----g~~-iv~~VnP~~~g~~--i~G~p~-----------y-----~sl~dl~~~~   98 (331)
                      ..-++|-||||=.|+.+.+.+.+.    +.. -+++=|++.-++.  ..+.+.           -     .|+.++..  
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak--   82 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK--   82 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh--
Confidence            345788999999999988877662    444 3344555432110  011111           1     24777766  


Q ss_pred             CCCEEEEecChhh--HHHHHHHHHHcCCcEEEEecCCCCh-hHHH--HHHHHHhccCCcEEEc
Q 020101           99 KANASAIYVPPPF--AAAAILEAMEAELDLVVCITEGIPQ-HDMV--RVKAALNNQSKTRLVG  156 (331)
Q Consensus        99 ~iDlaii~vp~~~--~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~--~l~~~a~~~~gi~viG  156 (331)
                      ...+++-|+-|-.  -..+++.|++.|.+.+=|  +|-++ -+..  +--+.| ++.|+-||+
T Consensus        83 ~~~vivN~vGPyR~hGE~VVkacienG~~~vDI--SGEP~f~E~mq~kYhd~A-~ekGVYIVs  142 (423)
T KOG2733|consen   83 QARVIVNCVGPYRFHGEPVVKACIENGTHHVDI--SGEPQFMERMQLKYHDLA-KEKGVYIVS  142 (423)
T ss_pred             hhEEEEeccccceecCcHHHHHHHHcCCceecc--CCCHHHHHHHHHHHHHHH-HhcCeEEEe
Confidence            6789998987744  377999999999998544  55443 1111  222455 788876664

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=82.36  E-value=2.8  Score=39.23  Aligned_cols=107  Identities=11%  Similarity=0.065  Sum_probs=59.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----e--cCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----H--LGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----i--~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +..+++|+|+ |.+|+.+...+.+.|+++. .+|..... ++    +  .|.....++++... .+.|++|.+||.....
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~-v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~~DivInatp~gm~~  192 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKADCNVI-IANRTVSKAEELAERFQRYGEIQAFSMDELPL-HRVDLIINATSAGMSG  192 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHHhhcCceEEechhhhcc-cCccEEEECCCCCCCC
Confidence            3567889999 8899999999998888755 66765310 11    1  02111223444321 2689999999975322


Q ss_pred             H-----HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          114 A-----AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       114 ~-----~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      +     +..+.+..+. .++-+...-.++   .+.+.| ++.|..++
T Consensus       193 ~~~~~~~~~~~l~~~~-~v~D~~y~p~~T---~ll~~A-~~~G~~~v  234 (270)
T TIGR00507       193 NIDEPPVPAEKLKEGM-VVYDMVYNPGET---PFLAEA-KSLGTKTI  234 (270)
T ss_pred             CCCCCCCCHHHcCCCC-EEEEeccCCCCC---HHHHHH-HHCCCeee
Confidence            1     1123333332 233333332233   355555 67888776

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR01746 Thioester-redct thioester reductase domain

Probab=82.32  E-value=4.4  Score=38.30  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT   74 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g--~~iv~~Vn   74 (331)
                      +|.|.|++|-+|+.+++.|.+.|  .++++.+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R   33 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR   33 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            36789999999999999999887  66775553

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=82.23  E-value=1.5  Score=41.58  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=43.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---c----C-cc--cccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---L----G-LP--VFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---~----G-~p--~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |..|+.++..|.+.|.+-+..+|..... +..   .    . ..  .+.++.+...  +.|++|.+||.
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~--~aDiVInaTp~  202 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA--AADGLVHATPT  202 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC--CCCEEEECCcC
Confidence            4567899999 8899999999999998534488886521 000   0    0 11  1233443333  68999999886


Q ss_pred             h
Q 020101          110 P  110 (331)
Q Consensus       110 ~  110 (331)
                      -
T Consensus       203 G  203 (284)
T PRK12549        203 G  203 (284)
T ss_pred             C
Confidence            4

>PRK12829 short chain dehydrogenase; Provisional

Probab=82.22  E-value=7  Score=35.32  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      +..++.|.|++|.+|+.+++.|.+.|++++ .++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~-~~~   42 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGARVH-VCD   42 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEe
Confidence            446788999999999999999999999976 444

>PLN00106 malate dehydrogenase

Probab=82.21  E-value=11  Score=36.62  Aligned_cols=33  Identities=12%  Similarity=-0.060  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTP   75 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP   75 (331)
                      +.||+|+|++|+.|+.+...+...+.  +++ .+|.
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~-L~Di   52 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELH-LYDI   52 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            45899999999999998887775543  444 5554

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=82.04  E-value=3  Score=40.28  Aligned_cols=109  Identities=21%  Similarity=0.287  Sum_probs=71.6

Q ss_pred             CEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC
Q 020101          182 RIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG  261 (331)
Q Consensus       182 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r  261 (331)
                      .|++|--+|.+..        .+.+.+   .++.     -+..+.|+....||+++.|+|.+++.|--.-......++++
T Consensus        60 ~Iavi~~~G~I~~--------~~~~~~---~~~~-----~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~  123 (317)
T COG0616          60 VIAVIHVEGAIVA--------GGGPLR---FIGG-----DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK  123 (317)
T ss_pred             EEEEEEeeeeeec--------CCCccc---cccH-----HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence            5999999988742        233333   3333     35789999999999999999999987644444444445543


Q ss_pred             ---CCCCEEEEEeCCCCCCCC-------C-----CCCCcccccCCCCCHHHHHHHHHHcCCe
Q 020101          262 ---TEKPIVAFIAGLTAPPGR-------R-----MGHAGAIVSGGKGTAQDKIKTLREAGVT  308 (331)
Q Consensus       262 ---~~KPVvv~k~Grs~~~g~-------~-----~sHtga~a~~~~g~~~~~~a~~~~aGv~  308 (331)
                         ..|||+++..+-...+|.       +     .+=|||+.=  ......+..++++.|+=
T Consensus       124 ~l~~~~PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGV--i~~~~~~~~l~~k~Gv~  183 (317)
T COG0616         124 RLRAKKPVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGV--ISGAPNFEELLEKLGVE  183 (317)
T ss_pred             HHhhcCCEEEEECCeecchhhhhhccCCEEEecCCceeeecee--EEecCCHHHHHHhcCCc
Confidence               555999999887665321       1     233566641  11244567888888864

>PLN02477 glutamate dehydrogenase

Probab=82.02  E-value=6.9  Score=39.31  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++..|.
T Consensus       204 l~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~  238 (410)
T PLN02477        204 IAGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI  238 (410)
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence            45678999998 999999999999999999976443

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.79  E-value=3.3  Score=42.24  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCccccc--CHHHhhhcCCCCEEEEecC
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFN--TVAEAKAETKANASAIYVP  108 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~--sl~dl~~~~~iDlaii~vp  108 (331)
                      |.+++..  .+|+|+|. |+.|...++.|...|++++ +.|.+....   +-.|+.++.  ...+...  .+|++|....
T Consensus         6 ~~~~~~~--~~v~V~G~-G~sG~aa~~~L~~~G~~v~-~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~--~~D~VV~SpG   79 (488)
T PRK03369          6 LDPLLPG--APVLVAGA-GVTGRAVLAALTRFGARPT-VCDDDPDALRPHAERGVATVSTSDAVQQIA--DYALVVTSPG   79 (488)
T ss_pred             cccccCC--CeEEEEcC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHhCCCEEEcCcchHhHhh--cCCEEEECCC
Confidence            5555533  46889999 9999999999999999877 566432100   112554432  1122222  4787776542


Q ss_pred             hhhHHHHHHHHHHcCCcE
Q 020101          109 PPFAAAAILEAMEAELDL  126 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~  126 (331)
                      -...-+.++++.++|++.
T Consensus        80 i~~~~p~~~~a~~~gi~v   97 (488)
T PRK03369         80 FRPTAPVLAAAAAAGVPI   97 (488)
T ss_pred             CCCCCHHHHHHHHCCCcE
Confidence            222234466666666554

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=81.74  E-value=6.1  Score=37.73  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      +|+|+|+ |..|+.++..+...|.  +++ .+|.+.
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~~~   35 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDINE   35 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCc
Confidence            6889998 9999999998888774  555 666544

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=81.72  E-value=4  Score=41.14  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=47.8

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHcCCeEEEEeCCCCCC--ce--ecCccccc--CHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG--TE--HLGLPVFN--TVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~g~~iv~~VnP~~~g--~~--i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +..+|.|+|. |+.|.. +++.|.+.|+++. +.|.+...  ++  -.|++++.  +.+. .+  ++|++|+.-.-...-
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~--~~d~vv~spgi~~~~   80 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAEN-IK--DADVVVYSSAIPDDN   80 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHH-CC--CCCEEEECCCCCCCC
Confidence            3456889999 889988 6899999999977 66654310  11  12555542  2222 22  588777543112222


Q ss_pred             HHHHHHHHcCCcE
Q 020101          114 AAILEAMEAELDL  126 (331)
Q Consensus       114 ~~v~~~~~~Gi~~  126 (331)
                      +.++++.++|++.
T Consensus        81 ~~~~~a~~~~i~i   93 (461)
T PRK00421         81 PELVAARELGIPV   93 (461)
T ss_pred             HHHHHHHHCCCcE
Confidence            3456666666654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=81.65  E-value=6  Score=41.89  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=53.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCcee---cCcccc-cCH-------HHhhhcCCCCEEEEe--
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH---LGLPVF-NTV-------AEAKAETKANASAIY--  106 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i---~G~p~y-~sl-------~dl~~~~~iDlaii~--  106 (331)
                      +.++|+|.|++|-+|+.+++.|.+. |+++++..+....-...   .++..+ .++       +++.+  ++|+++-+  
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~--~~D~ViHlAa  391 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIK--KCDVVLPLVA  391 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhc--CCCEEEECcc
Confidence            4577999999999999999999885 79988544322100000   122222 133       33333  68988842  


Q ss_pred             --cCh--------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          107 --VPP--------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       107 --vp~--------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        .|.              .....+++.|.+.| +.+|.+++
T Consensus       392 ~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS  432 (660)
T PRK08125        392 IATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST  432 (660)
T ss_pred             ccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence              221              12345677888888 55565555

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=81.61  E-value=2.5  Score=40.91  Aligned_cols=82  Identities=16%  Similarity=0.139  Sum_probs=55.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce--------ecCccc--ccCHHHhhhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE--------HLGLPV--FNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~--------i~G~p~--y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +...+++|+|+ |.+++.+++.+.. .+++-+...|+.....+        ..|+.+  +.++++...  +.|+++.+||
T Consensus       127 ~~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~--~aDiVvtaT~  203 (326)
T TIGR02992       127 EDSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMS--GADIIVTTTP  203 (326)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhc--cCCEEEEecC
Confidence            34567899999 9999999998874 57765557787652111        124433  567888776  7899999998


Q ss_pred             hhhHHHHH-HHHHHcCCcE
Q 020101          109 PPFAAAAI-LEAMEAELDL  126 (331)
Q Consensus       109 ~~~~~~~v-~~~~~~Gi~~  126 (331)
                      ...  .++ .+.++.|.+.
T Consensus       204 s~~--p~i~~~~l~~g~~i  220 (326)
T TIGR02992       204 SET--PILHAEWLEPGQHV  220 (326)
T ss_pred             CCC--cEecHHHcCCCcEE
Confidence            754  333 3566667654

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=81.54  E-value=8.5  Score=37.07  Aligned_cols=87  Identities=16%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-c------Ccccc-cCHHHhhhcCCCCEEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-L------GLPVF-NTVAEAKAETKANASA  104 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~------G~p~y-~sl~dl~~~~~iDlai  104 (331)
                      .+..||+|||+ |+.|..+.-.+...+.  +++ .+|.+..   |.  ++ .      ...++ .+.+++ +  +.|++|
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~-L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~-~--~adivI   78 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELV-IIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC-K--DADLVV   78 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh-C--CCCEEE
Confidence            45678999999 9999998887777665  454 6665431   11  01 1      11222 134443 2  678888


Q ss_pred             EecChhh----------------HHHHHHHHHHcCCcEEEEec
Q 020101          105 IYVPPPF----------------AAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       105 i~vp~~~----------------~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      ++.-...                ..++++++.+.+.+.+++.-
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv  121 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA  121 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence            7653211                34556666666666654433

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=81.52  E-value=14  Score=35.60  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      ...||+|||+ |+.|...+-.+...+.  +++ .+|.+.
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~-LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELV-LVDVVE   38 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeCCc
Confidence            3568999998 9999988877766554  455 777654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.51  E-value=3.6  Score=41.04  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=49.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--c---e--ecCccccc--CHHHhhhcCCCCEEEEecChhhH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--T---E--HLGLPVFN--TVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~---~--i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ..+|.|+|+ |+.|...++.|.+.|++++ +.|.+...  .   .  -.|++++.  .-.+++.+ .+|++|....-...
T Consensus         5 ~k~v~v~G~-g~~G~s~a~~l~~~G~~V~-~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~~~   81 (447)
T PRK02472          5 NKKVLVLGL-AKSGYAAAKLLHKLGANVT-VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVKNPGIPYT   81 (447)
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEECCCCCCC
Confidence            356789999 5699999999999999876 55533210  1   1  12555542  23344331 38877655411222


Q ss_pred             HHHHHHHHHcCCcE
Q 020101          113 AAAILEAMEAELDL  126 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~  126 (331)
                      ...+++|.++|++.
T Consensus        82 ~~~~~~a~~~~i~v   95 (447)
T PRK02472         82 NPMVEKALEKGIPI   95 (447)
T ss_pred             CHHHHHHHHCCCcE
Confidence            35677777887765

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=81.50  E-value=8  Score=36.72  Aligned_cols=83  Identities=13%  Similarity=0.074  Sum_probs=48.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCc---e--------ecC--cc--cccCHHHhhhcCCCCEEEEecC
Q 020101           45 VICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGT---E--------HLG--LP--VFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~---~--------i~G--~p--~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      |+|||+ |.+|..+...+...+. +++ .+|++..-.   .        ..+  ..  ...+.+++ .  +.|++|++..
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~-L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l-~--dADiVIit~g   75 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDI-A--GSDVVVITAG   75 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEE-EEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHh-C--CCCEEEEecC
Confidence            468999 9999988887776654 655 666543200   0        001  11  22345554 3  6899998663


Q ss_pred             ----------------hhhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 ----------------PPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ----------------~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                      .+...+++++..+..-+.++++.+
T Consensus        76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s  115 (300)
T cd01339          76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT  115 (300)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence                            122445666666777666544443

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=81.47  E-value=6.1  Score=41.74  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGG   72 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~   72 (331)
                      +..+|.|.|++|-+|+.+++.|.+.  ++++++.
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~   38 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVL   38 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence            4467899999999999999998876  6787743

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=81.46  E-value=9.5  Score=35.48  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCC-eEEEEeC
Q 020101           45 VICQGITGKNGTFHTEQAIEYGT-KMVGGVT   74 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~-~iv~~Vn   74 (331)
                      |+|.|++|-+|+.+++.|.+.|+ +++ .++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~   30 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDIL-VVD   30 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEE-EEe
Confidence            46899999999999999999997 555 554

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=81.44  E-value=11  Score=36.12  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      +|.|.|++|-+|+.+++.|.+.|+++++.
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~   30 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLEKGYEVHGL   30 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence            57889999999999999999999998744

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.23  E-value=3.2  Score=41.96  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--Cce------ecCcccccC--HHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTE------HLGLPVFNT--VAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~~------i~G~p~y~s--l~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|+|+|+ |..|...++.|.+.|++++ .+|.+..  ...      -.|++++..  .+ ...  .+|++|+.+--.
T Consensus        15 ~~~~v~viG~-G~~G~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~--~~D~Vv~s~Gi~   89 (480)
T PRK01438         15 QGLRVVVAGL-GVSGFAAADALLELGARVT-VVDDGDDERHRALAAILEALGATVRLGPGPT-LPE--DTDLVVTSPGWR   89 (480)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccC--CCCEEEECCCcC
Confidence            3457889999 8899888899999999866 6664321  000      136665531  22 222  578888765332


Q ss_pred             hHHHHHHHHHHcCCc
Q 020101          111 FAAAAILEAMEAELD  125 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~  125 (331)
                      ...+.+..+.+.|++
T Consensus        90 ~~~~~~~~a~~~gi~  104 (480)
T PRK01438         90 PDAPLLAAAADAGIP  104 (480)
T ss_pred             CCCHHHHHHHHCCCe
Confidence            222344455555544

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=81.14  E-value=5.3  Score=42.22  Aligned_cols=82  Identities=11%  Similarity=-0.044  Sum_probs=51.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC------------
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP------------  108 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp------------  108 (331)
                      +.++|.|.|++|-+|+.+.+.|.+.|+++.....      .+   .-...+.....+.++|++|-+.-            
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~------~l---~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~  449 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKG------RL---EDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCES  449 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEeecc------cc---ccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHh
Confidence            4468999999999999999999988888631211      11   11122444444447888884431            


Q ss_pred             ---------hhhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 ---------PPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ---------~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                               ...+..+++.|.+.|++.+ ++++
T Consensus       450 ~~~~~~~~N~~gt~~l~~a~~~~g~~~v-~~Ss  481 (668)
T PLN02260        450 HKVETIRANVVGTLTLADVCRENGLLMM-NFAT  481 (668)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHcCCeEE-EEcc
Confidence                     1124457788888999864 4544

>PRK08291 ectoine utilization protein EutC; Validated

Probab=81.12  E-value=3  Score=40.37  Aligned_cols=82  Identities=22%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCce--------ecCcc--cccCHHHhhhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTE--------HLGLP--VFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~--------i~G~p--~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +...+++|+|+ |.+++.++..+.. .+++.+..+|+....-+        ..|++  .+.+++++..  +.|+++.+||
T Consensus       130 ~~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~--~aDiVi~aT~  206 (330)
T PRK08291        130 EDASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVA--GADIIVTTTP  206 (330)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHc--cCCEEEEeeC
Confidence            44567899999 9899999888775 56765557787642101        12444  4678888776  6899999988


Q ss_pred             hhhHHHHHH-HHHHcCCcE
Q 020101          109 PPFAAAAIL-EAMEAELDL  126 (331)
Q Consensus       109 ~~~~~~~v~-~~~~~Gi~~  126 (331)
                      ...  .+++ +.++.|.+.
T Consensus       207 s~~--p~i~~~~l~~g~~v  223 (330)
T PRK08291        207 SEE--PILKAEWLHPGLHV  223 (330)
T ss_pred             CCC--cEecHHHcCCCceE
Confidence            653  3332 345666554

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=81.03  E-value=6.8  Score=39.40  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      .||.|+|. |..+..+++.+++.|++++ .+++
T Consensus         3 kkili~g~-g~~~~~~~~aa~~lG~~vv-~~~~   33 (449)
T TIGR00514         3 DKILIANR-GEIALRILRACKELGIKTV-AVHS   33 (449)
T ss_pred             ceEEEeCC-CHHHHHHHHHHHHcCCeEE-EEEC
Confidence            47888998 7778888899999999977 5544

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=80.81  E-value=2.3  Score=34.02  Aligned_cols=66  Identities=20%  Similarity=0.112  Sum_probs=43.1

Q ss_pred             EEEcCCCCCC---------cHHHHHHHHcCCeEEEEeCCCCCCcee------cCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           46 ICQGITGKNG---------TFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        46 aIvGasgk~G---------~~~~~~l~~~g~~iv~~VnP~~~g~~i------~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +|.|.+=|.+         ..+++.|.+.|+++. ..||.......      .+++..+++++..+  ..|++|+.|+.+
T Consensus         1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~-~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vvl~t~h~   77 (106)
T PF03720_consen    1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVS-VYDPYVDEEEIKELGKLEGVEVCDDLEEALK--GADAVVLATDHD   77 (106)
T ss_dssp             EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEE-EE-TTSHHHHHHHHCHHHCEEEESSHHHHHT--TESEEEESS--G
T ss_pred             CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEE-EECCccChHHHHhhCCccceEEecCHHHHhc--CCCEEEEEecCH
Confidence            3577765544         346678888999876 88998732222      35777778888877  799999999887


Q ss_pred             hHHH
Q 020101          111 FAAA  114 (331)
Q Consensus       111 ~~~~  114 (331)
                      .-.+
T Consensus        78 ~f~~   81 (106)
T PF03720_consen   78 EFRE   81 (106)
T ss_dssp             GGGC
T ss_pred             HHhc
Confidence            6554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=80.61  E-value=1.7  Score=34.96  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=12.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY   65 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~   65 (331)
                      +||.|||- |--.+++...|.+.
T Consensus         1 MkVLviGs-GgREHAia~~l~~s   22 (100)
T PF02844_consen    1 MKVLVIGS-GGREHAIAWKLSQS   22 (100)
T ss_dssp             EEEEEEES-SHHHHHHHHHHTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcC
Confidence            47899997 42223344556554

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=80.57  E-value=5.1  Score=45.07  Aligned_cols=75  Identities=19%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             CCeEEEEEcCCCC-C---------CcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccc------cCHHHhhhcCCCC
Q 020101           41 KNTRVICQGITGK-N---------GTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVF------NTVAEAKAETKAN  101 (331)
Q Consensus        41 k~~~VaIvGasgk-~---------G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y------~sl~dl~~~~~iD  101 (331)
                      +-.+|.|+|+.+. +         |+.+.+.|++.|++++ .+|++...-   ....-+.|      ..+.++.+++++|
T Consensus         6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D   84 (1068)
T PRK12815          6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-LVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPD   84 (1068)
T ss_pred             CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-EEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcC
Confidence            3467999998432 3         4566788999999988 777665210   00111222      1244544445677


Q ss_pred             EEEEecChhhHHHHH
Q 020101          102 ASAIYVPPPFAAAAI  116 (331)
Q Consensus       102 laii~vp~~~~~~~v  116 (331)
                      .++...-.+......
T Consensus        85 ~Iip~~gg~~~l~~a   99 (1068)
T PRK12815         85 ALLATLGGQTALNLA   99 (1068)
T ss_pred             EEEECCCCchHHHHH
Confidence            776654444444333

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=80.51  E-value=4.1  Score=39.51  Aligned_cols=24  Identities=17%  Similarity=0.110  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY   65 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~   65 (331)
                      +.+|+|+||+|..|+.++..|...
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~   25 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKG   25 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhC
Confidence            567999999999999998887763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06841 short chain dehydrogenase; Provisional

Probab=80.41  E-value=7  Score=35.25  Aligned_cols=83  Identities=14%  Similarity=0.152  Sum_probs=49.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~  119 (331)
                      +..+|+|.|+++.+|+.+.+.|.+.|++++ .++.+.  +.   .   ....++... .+. +..+.+.++.....++++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi-~~~r~~--~~---~---~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~   83 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVA-LLDRSE--DV---A---EVAAQLLGG-NAKGLVCDVSDSQSVEAAVAAV   83 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---H---HHHHHhhCC-ceEEEEecCCCHHHHHHHHHHH
Confidence            345688999999999999999999999876 555433  10   0   111122110 111 223455666667777666


Q ss_pred             HHc--CCcEEEEecCCC
Q 020101          120 MEA--ELDLVVCITEGI  134 (331)
Q Consensus       120 ~~~--Gi~~ivi~t~G~  134 (331)
                      .+.  ++..++ ...|.
T Consensus        84 ~~~~~~~d~vi-~~ag~   99 (255)
T PRK06841         84 ISAFGRIDILV-NSAGV   99 (255)
T ss_pred             HHHhCCCCEEE-ECCCC
Confidence            553  577654 45554

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=80.36  E-value=9.5  Score=33.78  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~   76 (331)
                      .+|+|.|++|.+|+.+++.+.+.|++++ .++.+
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r~   38 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAADGAKVV-IYDSN   38 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            5688999999999999999999999965 66544

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=80.25  E-value=12  Score=30.58  Aligned_cols=92  Identities=12%  Similarity=0.074  Sum_probs=49.5

Q ss_pred             CCcHHHH-HHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh----HHHHHHHHHHcCCcEEE
Q 020101           54 NGTFHTE-QAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF----AAAAILEAMEAELDLVV  128 (331)
Q Consensus        54 ~G~~~~~-~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~----~~~~v~~~~~~Gi~~iv  128 (331)
                      .|..... .++..||++++ ..+.        .|.-.-++.+ .+.++|++.++.....    +.+.++.+.+.|.+.+.
T Consensus        14 lG~~~~~~~l~~~G~~vi~-lG~~--------vp~e~~~~~a-~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~   83 (122)
T cd02071          14 RGAKVIARALRDAGFEVIY-TGLR--------QTPEEIVEAA-IQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDIL   83 (122)
T ss_pred             HHHHHHHHHHHHCCCEEEE-CCCC--------CCHHHHHHHH-HHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCE
Confidence            4444444 45557999773 1111        2222223333 3458999999975443    44555666666663333


Q ss_pred             EecCCCC-hhHHHHHHHHHhccCCcE-EEccCCC
Q 020101          129 CITEGIP-QHDMVRVKAALNNQSKTR-LVGPNCP  160 (331)
Q Consensus       129 i~t~G~~-e~~~~~l~~~a~~~~gi~-viGPnc~  160 (331)
                      ++-.|-. +++.+++     ++.|+. +++|+|-
T Consensus        84 i~~GG~~~~~~~~~~-----~~~G~d~~~~~~~~  112 (122)
T cd02071          84 VVGGGIIPPEDYELL-----KEMGVAEIFGPGTS  112 (122)
T ss_pred             EEEECCCCHHHHHHH-----HHCCCCEEECCCCC
Confidence            4445533 3333322     467874 8888863

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=80.22  E-value=6.6  Score=37.62  Aligned_cols=84  Identities=19%  Similarity=0.219  Sum_probs=52.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-cCcccc-------cCHHHhhhcCCCCEEEEecC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-LGLPVF-------NTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~G~p~y-------~sl~dl~~~~~iDlaii~vp  108 (331)
                      +|+|||+ |..|...+..+...|.  +++ .+|++..   +.  +. ...+.+       .+.+++ .  +.|+++++.+
T Consensus         2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~-l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l-~--~aDiViita~   76 (308)
T cd05292           2 KVAIVGA-GFVGSTTAYALLLRGLASEIV-LVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADC-K--GADVVVITAG   76 (308)
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCCEEE-EEECCchhhhhHHHHHHccccccCCeEEeeCCHHHh-C--CCCEEEEccC
Confidence            6889999 9999998888888773  444 6665541   11  01 111221       245553 3  6899999987


Q ss_pred             hhh----------------HHHHHHHHHHcCCcEEEEecC
Q 020101          109 PPF----------------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~~~----------------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ...                ..+.++++.+.+-+++++..+
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            531                445667777777777665553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=80.03  E-value=7.7  Score=37.51  Aligned_cols=114  Identities=14%  Similarity=0.075  Sum_probs=59.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCH-----------HHhhhcCCCCEEEEecChhhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV-----------AEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl-----------~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +|.|||+ |-.|..++++|...|+.-+..+|+.....+-.+...+-+-           .+...+.++++-|........
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            4789999 8899999999999898755588887643222333322111           111222234444433222111


Q ss_pred             H-HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCc
Q 020101          113 A-AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV  162 (331)
Q Consensus       113 ~-~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi  162 (331)
                      . ....+.. .+...|+. +. -+.+....+-+.+ +++++.++--.+.|+
T Consensus        80 ~~~~~~~f~-~~~DvVv~-a~-Dn~~ar~~in~~c-~~~~ip~I~~gt~G~  126 (312)
T cd01489          80 DPDFNVEFF-KQFDLVFN-AL-DNLAARRHVNKMC-LAADVPLIESGTTGF  126 (312)
T ss_pred             CccchHHHH-hcCCEEEE-CC-CCHHHHHHHHHHH-HHCCCCEEEEecCcc
Confidence            1 1111222 24555442 22 2233333455666 677888776666664

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK07454 short chain dehydrogenase; Provisional

Probab=80.03  E-value=3.9  Score=36.67  Aligned_cols=86  Identities=19%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE-EEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl-aii~vp~~~~~~~v~~~  119 (331)
                      +..+++|.|+++.+|+.+++.+.+.|++++ .++.+.  +...  .....+.+...  +++. ..+.+..+.....++++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~--~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~   77 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLA-LVARSQ--DALE--ALAAELRSTGV--KAAAYSIDLSNPEAIAPGIAEL   77 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCCH--HHHH--HHHHHHHhCCC--cEEEEEccCCCHHHHHHHHHHH
Confidence            345678899999999999999999999876 555432  1111  01111111111  2222 23455667777777776


Q ss_pred             HHc--CCcEEEEecCCC
Q 020101          120 MEA--ELDLVVCITEGI  134 (331)
Q Consensus       120 ~~~--Gi~~ivi~t~G~  134 (331)
                      .++  ++..++ ...|.
T Consensus        78 ~~~~~~id~lv-~~ag~   93 (241)
T PRK07454         78 LEQFGCPDVLI-NNAGM   93 (241)
T ss_pred             HHHcCCCCEEE-ECCCc
Confidence            653  477655 45554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
2fpg_A	305	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		2e-94
1euc_A	311	Crystal Structure Of Dephosphorylated Pig Heart, Gt		2e-94
1jkj_A	288	E. Coli Scs Length = 288		2e-93
1cqi_A	286	Crystal Structure Of The Complex Of Adp And Mg2+ Wi		1e-92
1eud_A	311	Crystal Structure Of Phosphorylated Pig Heart, Gtp-		1e-92
2nu7_A	288	C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le		1e-92
2fp4_A	305	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		2e-92
2nu8_A	288	C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le		2e-92
2nua_A	288	C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le		2e-92
2scu_A	288	A Detailed Description Of The Structure Of Succinyl		7e-87
2nu6_A	288	C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le		7e-86
2nu9_A	288	C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or		9e-86
2yv2_A	297	Crystal Structure Of Succinyl-Coa Synthetase Alpha		9e-71
2yv1_A	294	Crystal Structure Of Succinyl-Coa Synthetase Alpha		6e-61
3ufx_A	296	Thermus Aquaticus Succinyl-coa Synthetase In Comple		8e-60
1oi7_A	288	The Crystal Structure Of Succinyl-Coa Synthetase Al		2e-59
3mwe_B	335	Truncated Human Atp-Citrate Lyase With Tartrate Bou		3e-13
3pff_A	829	Truncated Human Atp-Citrate Lyase With Adp And Tart		6e-13
3mwd_B	334	Truncated Human Atp-Citrate Lyase With Citrate Boun		2e-12

>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305

Iteration: 1
 Score =  342 bits (876), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/296 (63%), Positives = 218/296 (73%), Gaps = 3/296 (1%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 9   LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 68
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 69  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 129 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 188
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 189 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 248
Query: 274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R +
Sbjct: 249 TAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 304

>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311

Iteration: 1
 Score =  342 bits (876), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/296 (63%), Positives = 218/296 (73%), Gaps = 3/296 (1%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 15  LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 74
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 75  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 134
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 135 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 194
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 195 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 254
Query: 274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           TAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R +
Sbjct: 255 TAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 310

>pdb|1JKJ|A Chain A, E. Coli Scs Length = 288

Iteration: 1
 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/289 (60%), Positives = 202/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286

Iteration: 1
 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/284 (60%), Positives = 200/284 (70%), Gaps = 2/284 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAM 320
            G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEAL 283

>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311

Iteration: 1
 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/296 (62%), Positives = 217/296 (73%), Gaps = 3/296 (1%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 15  LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 74
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 75  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 134
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 135 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 194
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 195 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 254
Query: 274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           TAPPGRRMG AGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R +
Sbjct: 255 TAPPGRRMGXAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 310

>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  335 bits (860), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 174/289 (60%), Positives = 201/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305

Iteration: 1
 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/296 (62%), Positives = 217/296 (73%), Gaps = 3/296 (1%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK 
Sbjct: 9   LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 68
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           +T A AS IYVPPPF               VVCITEGIPQ DMVRVK  L  Q KTRL+G
Sbjct: 69  QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 129 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 188
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
           PFNGT+F DC+  F+ DP T               +AA  +K+  +    KP+V+FIAGL
Sbjct: 189 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 248
Query: 274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           TAPPGRRMG AGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R +
Sbjct: 249 TAPPGRRMGXAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 304

>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/289 (60%), Positives = 201/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 174/289 (60%), Positives = 201/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNVPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288

Iteration: 1
 Score =  317 bits (811), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 174/289 (60%), Positives = 201/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMG AGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGXAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288

Iteration: 1
 Score =  313 bits (803), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 173/289 (59%), Positives = 200/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNAPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMG AGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGXAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288

Iteration: 1
 Score =  313 bits (802), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 173/289 (59%), Positives = 200/289 (69%), Gaps = 2/289 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF               ++ ITEGIP  DM+ VK  L+ ++  R++G
Sbjct: 62  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGD
Sbjct: 121 PNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G+NF+D +  F  DPQT               +AAA IKE  T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
            G+RMG AGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 240 KGKRMGXAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297

Iteration: 1
 Score =  263 bits (672), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 137/281 (48%), Positives = 177/281 (62%), Gaps = 2/281 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           V VD  TRV+ QGITG+ G+FH +  +EYGTK+V GVTP KGG+E  G+PV+++V EA A
Sbjct: 8   VLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALA 67
Query: 97  ET-KANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           E  + N S ++VP PF               VV ITEGIP HD +R       Q    ++
Sbjct: 68  EHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRF-VNYARQKGATII 126
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPG I PG+ K+GIMPG+I K G + +VSRSGTLTYE  +  T  G+GQST +GIGG
Sbjct: 127 GPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGG 186
Query: 216 DPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA 275
           DP  G +F + +  F  DPQT                AA +IK+    KP++A+IAG TA
Sbjct: 187 DPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTA 246
Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 316
           PP +RMGHAGAI+  G GT + K+K LREAGV V E+P ++
Sbjct: 247 PPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEV 287

>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294

Iteration: 1
 Score =  231 bits (588), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 126/280 (45%), Positives = 168/280 (60%), Gaps = 3/280 (1%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG    G+PVF+TV EA  
Sbjct: 8   ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
           ET ANAS I+VP PF               +V ITE IP HD +            +++G
Sbjct: 68  ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIG 126
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
           PN PG+  P   K+GI+P  + K G +G+VSRSGTLTYE   Q    G G STCVGIGGD
Sbjct: 127 PNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGD 186
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  G  + + +  F  D +T               +AA  I++   +KP++ +IAG +AP
Sbjct: 187 PIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSAP 244
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 316
            G+RMGHAGAIV  GKGTA+ K+K L EAG  V ++ + I
Sbjct: 245 EGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDI 284

>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296

Iteration: 1
 Score =  227 bits (578), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 134/280 (47%), Positives = 175/280 (62%), Gaps = 2/280 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V+K TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNKETRVLVQGITGREGQFHTKQMLSYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P                +V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
            NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  GT F D +  F  DP+T               +AAA +K+   +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 316
            G+RMGHAGAI+ G  GT + K++   EAG+ V ++  +I
Sbjct: 240 KGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279

>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288

Iteration: 1
 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/280 (47%), Positives = 175/280 (62%), Gaps = 2/280 (0%)
Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97  ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P                +V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
            NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
           P  GT F D +  F  DP+T               +AAA +K+   +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 316
            G+RMGHAGAI+ G  GT + K++   EAG+ V ++  +I
Sbjct: 240 KGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279

>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 335

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 12/211 (5%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
           +  I EGIP+  + R      +Q    ++GP   G IKPG  KIG        I+   ++
Sbjct: 108 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 166
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
           +PG +  VSRSG ++ E     +    G    V IGGD + G+ F+D V ++   P    
Sbjct: 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 226
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGAIVSGGKGTA 295
                             IKE    KPIV +  G  A       + GHAGA  +    TA
Sbjct: 227 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETA 286
Query: 296 QDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
             K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 287 VAKNQALKEAGVFVPRSFDELGEIIQSVYED 317

>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 12/211 (5%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
           +  I EGIP+  + R      +Q    ++GP   G IKPG  KIG        I+   ++
Sbjct: 594 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
           +PG +  VSRSG ++ E     +    G    V IGGD + G+ F+D V ++   P    
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGAIVSGGKGTA 295
                             IKE    KPIV +  G  A       + GHAGA  +    TA
Sbjct: 713 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETA 772
Query: 296 QDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
             K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 773 VAKNQALKEAGVFVPRSFDELGEIIQSVYED 803

>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 334

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 91/211 (43%), Gaps = 12/211 (5%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
           +  I EGIP+  + R      +Q    ++GP   G IKPG  KIG        I+   ++
Sbjct: 108 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGXLDNILASKLY 166
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
           +PG +  VSRSG  + E     +    G    V IGGD + G+ F D V ++   P    
Sbjct: 167 RPGSVAYVSRSGGXSNELNNIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVKX 226
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGAIVSGGKGTA 295
                             IKE    KPIV +  G  A       + GHAGA  +    TA
Sbjct: 227 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATXFSSEVQFGHAGACANQASETA 286
Query: 296 QDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
             K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 287 VAKNQALKEAGVFVPRSFDELGEIIQSVYED 317

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	0.0
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	0.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	0.0
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	0.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	0.0
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	1e-169
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	1e-158
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	1e-110
2csu_A	457	457AA long hypothetical protein; structural genomi	2e-12

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305

 Score =  570 bits (1471), Expect = 0.0
 Identities = 211/297 (71%), Positives = 245/297 (82%), Gaps = 3/297 (1%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
            ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EAK
Sbjct: 8   HLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAK 67

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
            +T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK  L  Q KTRL+
Sbjct: 68  EQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGG
Sbjct: 128 GPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGG 187

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTE---KPIVAFIAG 272
           DPFNGT+F DC+  F+ DP TEGIILIGEIGG AEE+AA  +K+  +    KP+V+FIAG
Sbjct: 188 DPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAG 247

Query: 273 LTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           LTAPPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R +
Sbjct: 248 LTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 304

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297

 Score =  559 bits (1444), Expect = 0.0
 Identities = 154/292 (52%), Positives = 204/292 (69%), Gaps = 2/292 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           AV VD  TRV+ QGITG+ G+FH +  +EYGTK+V GVTP KGG+E  G+PV+++V EA 
Sbjct: 7   AVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEAL 66

Query: 96  AE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
           AE  + N S ++VP PFA  A+ EA++A + LVV ITEGIP HD +R       Q    +
Sbjct: 67  AEHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYAR-QKGATI 125

Query: 155 VGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIG 214
           +GPNCPG I PG+ K+GIMPG+I K G + +VSRSGTLTYE  +  T  G+GQST +GIG
Sbjct: 126 IGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIG 185

Query: 215 GDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274
           GDP  G +F + +  F  DPQTE ++LIGEIGG  EE AA +IK+    KP++A+IAG T
Sbjct: 186 GDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRT 245

Query: 275 APPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
           APP +RMGHAGAI+  G GT + K+K LREAGV V E+P ++   + +  ++
Sbjct: 246 APPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALRR 297

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288

 Score =  557 bits (1437), Expect = 0.0
 Identities = 191/290 (65%), Positives = 226/290 (77%), Gaps = 2/290 (0%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
           ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA 
Sbjct: 1   SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 60

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
           A T A AS IYVP PF   +ILEA++A + L++ ITEGIP  DM+ VK  L+ ++  R++
Sbjct: 61  AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMI 119

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGG
Sbjct: 120 GPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 179

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP  G+NF+D +  F  DPQTE I++IGEIGG+AEE+AAA IKE  T KP+V +IAG+TA
Sbjct: 180 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTA 238

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 325
           P G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct: 239 PKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294

 Score =  554 bits (1429), Expect = 0.0
 Identities = 143/291 (49%), Positives = 195/291 (67%), Gaps = 3/291 (1%)

Query: 36  AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
            + +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG    G+PVF+TV EA 
Sbjct: 7   MILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAV 66

Query: 96  AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
            ET ANAS I+VP PFA  A+ EA++A ++L+V ITE IP HD +            +++
Sbjct: 67  KETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAE-DVGVKII 125

Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
           GPN PG+  P   K+GI+P  + K G +G+VSRSGTLTYE   Q    G G STCVGIGG
Sbjct: 126 GPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGG 185

Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
           DP  G  + + +  F  D +TE I++IGEIGG AEE+AA  I++   +KP++ +IAG +A
Sbjct: 186 DPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSA 243

Query: 276 PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
           P G+RMGHAGAIV  GKGTA+ K+K L EAG  V ++ + I   +  +  +
Sbjct: 244 PEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILGK 294

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288

 Score =  549 bits (1418), Expect = 0.0
 Identities = 151/288 (52%), Positives = 198/288 (68%), Gaps = 2/288 (0%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P AA A LEA  A + L+V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIK-ALGSRLIG 120

Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
            NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180

Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
           P  GT F D +  F  DP+TE ++LIGEIGG+ EE+AAA +K+    KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMK-KPVVGFIGGRSAP 239

Query: 277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 324
            G+RMGHAGAI+ G  GT + K++   EAG+ V ++  +I   + +  
Sbjct: 240 KGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334

 Score =  473 bits (1219), Expect = e-169
 Identities = 87/315 (27%), Positives = 141/315 (44%), Gaps = 25/315 (7%)

Query: 36  AVFVDKNTRVICQGITGK--NGTFHTEQAIEY-GTKMVGGVTPKKG--------GTEHLG 84
                ++T+ I  G+  +   G    +         +   V P  G        G + + 
Sbjct: 4   TTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 63

Query: 85  LPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRV 142
           +PVF  +A+A +   + +    +     A  + +E M  A++  +  I EGIP+    ++
Sbjct: 64  IPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKL 123

Query: 143 KAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIHKPGRIGIVSRSGTLTY 194
               + Q    ++GP   G IKPG  KIG        I+   +++PG +  VSRSG ++ 
Sbjct: 124 IKKAD-QKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSN 182

Query: 195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAA 254
           E     +    G    V IGGD + G+ F+D V ++   P  + I+++GEIGGT E    
Sbjct: 183 ELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKIC 242

Query: 255 ALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVE 311
             IKE    KPIV +  G  A       + GHAGA  +    TA  K + L+EAGV V  
Sbjct: 243 RGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPR 302

Query: 312 SPAKIGAAMLEVFKQ 326
           S  ++G  +  V++ 
Sbjct: 303 SFDELGEIIQSVYED 317

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829

 Score =  461 bits (1188), Expect = e-158
 Identities = 88/330 (26%), Positives = 143/330 (43%), Gaps = 25/330 (7%)

Query: 21  CGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKN--GTFHTEQAIEY-GTKMVGGVTPKK 77
              S     +          ++T+ I  G+  +   G    +         +   V P  
Sbjct: 475 PQDSVPSPRSLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFT 534

Query: 78  G--------GTEHLGLPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAME-AELDLV 127
           G        G + + +PVF  +A+A +   + +    +     A  + +E M  A++  +
Sbjct: 535 GDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTI 594

Query: 128 VCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIHK 179
             I EGIP+    ++    + Q    ++GP   G IKPG  KIG        I+   +++
Sbjct: 595 AIIAEGIPEALTRKLIKKAD-QKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYR 653

Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239
           PG +  VSRSG ++ E     +    G    V IGGD + G+ F+D V ++   P  + I
Sbjct: 654 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMI 713

Query: 240 ILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGAIVSGGKGTAQ 296
           +++GEIGGT E      IKE    KPIV +  G  A       + GHAGA  +    TA 
Sbjct: 714 VVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAV 773

Query: 297 DKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
            K + L+EAGV V  S  ++G  +  V++ 
Sbjct: 774 AKNQALKEAGVFVPRSFDELGEIIQSVYED 803

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480

 Score =  329 bits (845), Expect = e-110
 Identities = 49/263 (18%), Positives = 97/263 (36%), Gaps = 19/263 (7%)

Query: 61  QAIEYGTKMVGGVTPKKGGTEHL-GLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119
           Q +E   K    +    G ++ L  +  +++  +      AN + I V   +AA    +A
Sbjct: 2   QQLEEALK---QLAQGSGSSQALTQVRRWDSACQK--LPDANLALISVAGEYAAELANQA 56

Query: 120 MEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHK 179
           ++  L+ V+  ++ +   D +++K     +    ++GP+C   +  G     +    +  
Sbjct: 57  LDRNLN-VMMFSDNVTLEDEIQLKTRAR-EKGLLVMGPDCGTSMIAG---TPLAFANVMP 111

Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG----DPFNGTNFVDCVTKFIADPQ 235
            G IG++  SGT   E   Q    G G +  +G+GG        G + +  +    AD +
Sbjct: 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEK 171

Query: 236 TEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMG--HAGAIVSGG-K 292
           +E +  + +    A         ++   KP VA   G T    R      A ++      
Sbjct: 172 SEVLAFVSKPPAEAVRLKIVNAMKATG-KPTVALFLGYTPAVARDENVWFASSLDEAARL 230

Query: 293 GTAQDKIKTLREAGVTVVESPAK 315
                ++   R A   V      
Sbjct: 231 ACLLSRVTARRNAIAPVSSGFIC 253

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Length = 457

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 46/260 (17%)

Query: 73  VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT- 131
           V  K    E  G+  + +V +   E   + + I VP  F    +++  E  +  VV IT 
Sbjct: 42  VNIK--EEEVQGVKAYKSVKDIPDE--IDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITA 97

Query: 132 -------EGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIH--KPGR 182
                  EG  +   +   A    +   R++GPNC G++      + +   +I   K G 
Sbjct: 98  GFGETGEEGKREEKELVEIAH---KYGMRIIGPNCVGIMNTH---VDLNATFITVAKKGN 151

Query: 183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT--NFVDCVTKFIADPQTEGII 240
           +  +S+SG L    V++T    +G S  + +G    N    +F + +       + + I 
Sbjct: 152 VAFISQSGALGAGIVYKTIKEDIGFSKFISVG----NMADVDFAELMEYLADTEEDKAIA 207

Query: 241 LIGE-IGGTAEEDAAALI---KESGTEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGT 294
           L  E +      +    +   K    +KPI+A  AG +   G R    H G++       
Sbjct: 208 LYIEGVR-----NGKKFMEVAKRVTKKKPIIALKAGKSE-SGARAASSHTGSLAG----- 256

Query: 295 AQDKIKT--LREAGVTVVES 312
              KI     +++GV V  +
Sbjct: 257 -SWKIYEAAFKQSGVLVANT 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	100.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	100.0
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	100.0
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	100.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	100.0
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	100.0
2csu_A	457	457AA long hypothetical protein; structural genomi	100.0
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	100.0
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	100.0
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	99.9
2duw_A	145	Putative COA-binding protein; ligand binding prote	99.89
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.89
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	99.89
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	99.88
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	99.47
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	99.39
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	99.24
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	99.23
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	99.22
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	99.18
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.04
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.03
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.02
4had_A	350	Probable oxidoreductase protein; structural genomi	98.96
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.96
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.95
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.94
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.94
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.93
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.93
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.93
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.93
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	98.92
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.92
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.91
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.91
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.91
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.91
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.9
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.9
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.89
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.89
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.88
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.88
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.87
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.87
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.87
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.86
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.86
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.86
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.84
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.82
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.82
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.8
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.8
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.8
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.79
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.79
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.79
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.79
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.78
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.77
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.77
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.75
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.74
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.74
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.73
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.7
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.7
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.69
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.69
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.67
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.64
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.49
2csu_A	457	457AA long hypothetical protein; structural genomi	98.46
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.41
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.38
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.32
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.16
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	98.16
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	98.11
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.06
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	98.05
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.99
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.9
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.9
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	97.89
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.89
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.88
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.86
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.84
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.84
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.83
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.81
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.81
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.78
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.76
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.75
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.74
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.74
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.73
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	97.73
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.71
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.71
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.7
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.69
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.66
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.65
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.63
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.62
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.61
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.6
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.6
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.59
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.59
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.53
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.53
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.48
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.48
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.48
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.47
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.47
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.46
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.43
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.43
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.4
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.39
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.39
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.38
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.38
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.36
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.36
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.35
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.34
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	97.32
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.31
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.28
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.25
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.23
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.21
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.21
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.18
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.16
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.16
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.15
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	97.14
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.1
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.1
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.09
2g0t_A	350	Conserved hypothetical protein; structural genomic	97.09
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.09
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.09
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.08
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.04
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.03
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.02
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.01
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.0
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.99
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.94
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.93
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.87
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.87
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.87
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.87
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.83
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.83
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.82
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	96.77
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.76
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.75
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.74
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.72
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.71
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.69
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.68
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.67
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.63
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.62
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.57
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.55
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.54
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.52
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.49
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.47
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.47
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.46
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.45
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.42
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.42
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.42
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.4
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.38
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.38
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.38
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.36
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.36
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	96.35
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.32
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.31
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.3
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.3
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.28
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.28
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.26
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.25
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.23
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.22
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.22
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.22
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.2
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.2
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.17
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.17
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.17
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.16
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.15
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.14
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.14
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.13
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.13
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	96.13
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.08
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	96.07
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.06
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.03
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.02
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.02
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	96.02
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.01
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.99
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.97
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.95
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.95
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.95
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.94
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.92
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.9
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.9
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.88
2obn_A	349	Hypothetical protein; structural genomics, joint c	95.86
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.86
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.85
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.83
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.83
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.82
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.8
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.75
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.73
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.72
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	95.72
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.71
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	95.71
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	95.69
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.67
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.65
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.64
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.62
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.53
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.48
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.48
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.47
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.45
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.42
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.39
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.39
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.38
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.38
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.37
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.36
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.32
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.32
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.31
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.3
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.24
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.23
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.19
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.18
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.17
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.15
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.0
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.91
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.84
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.82
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.77
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.76
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.65
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.65
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.65
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	94.64
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.53
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	94.52
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	94.51
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.51
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.42
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.41
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.39
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.37
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.36
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.32
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.26
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.25
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.13
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.12
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	94.08
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.92
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.86
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.82
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	93.7
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	93.59
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.58
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.56
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.55
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	93.5
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.47
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	93.45
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	93.45
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	93.42
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	93.41
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.36
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	93.36
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.27
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	93.24
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	93.23
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	93.04
2g6t_A	306	Uncharacterized protein, homolog HI1244 from haemo	93.02
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	92.97
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	92.93
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.91
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	92.87
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.64
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	92.62
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.52
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	92.3
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	92.22
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.2
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.18
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.06
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	91.67
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.66
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	91.59
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	91.59
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	91.57
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	91.37
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	91.35
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	91.23
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.19
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.1
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.05
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	91.03
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.81
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.78
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.74
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	90.68
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	90.66
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	90.58
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	90.55
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	90.33
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	90.26
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	90.19
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	90.18
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.15
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	90.1
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	90.08
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	90.04
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	89.98
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	89.82
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.59
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	89.47
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	89.35
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	89.29
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	89.16
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	89.03
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	88.97
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	88.96
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	88.93
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	88.9
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	88.81
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	88.65
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	88.58
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	88.55
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	88.44
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	88.41
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	88.29
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	88.1
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	87.94
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	87.76
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.5
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	87.48
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	87.43
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	87.35
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	87.01
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	86.99
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	86.78
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	86.72
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	86.7
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	86.39
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.2
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	86.09
4f6c_A	427	AUSA reductase domain protein; thioester reductase	85.99
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	85.88
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	85.82
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	85.8
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	85.66
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	85.55
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	85.52
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	85.48
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	85.47
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	85.17
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.08
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	85.05
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.93
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	84.85
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	84.83
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	84.82
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	84.75
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	84.63
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	84.31
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	84.24
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.09
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	84.09
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.06
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	84.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	83.94
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	83.85
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	83.66
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	83.63
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	83.56
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	83.39
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	83.36
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	83.36
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	82.92
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	82.78
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	82.75
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	82.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	82.69
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	82.54
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	82.21
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	81.88
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	81.5
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	81.33
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	81.19
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.85
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	80.84
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	80.71
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.66
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	80.54
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	80.38
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	80.13
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	80.02

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=100.00  E-value=2.3e-70  Score=520.94  Aligned_cols=300  Identities=69%  Similarity=1.137  Sum_probs=271.2

Q ss_pred             CCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEE
Q 020101           26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        26 ~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      +|+++.  +..+|.|+++. +|+|+||++|+.++++++++||+++++|||+..|+++.|+|+|++++|+++++++|++++
T Consensus         1 ~~~~~~--~~~l~~~~sia-VV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI   77 (305)
T 2fp4_A            1 SYTASR--KHLYVDKNTKV-ICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI   77 (305)
T ss_dssp             CTGGGG--GGGCCCTTCEE-EEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             CchhhH--HHHHhCCCcEE-EEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEE
Confidence            366664  66677776643 334999999999999999999998889999976668999999999999998667999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccC-CcEEEccCCCCcccCCCcccccCCCCCCCCCCEE
Q 020101          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQS-KTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIG  184 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~-gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~va  184 (331)
                      ++|++.+++++++|+++|++.+|+|++|+++++++++.+.+ +++ |++++||||+|+++|.....+++|...+++|+||
T Consensus        78 ~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a-~~~~gi~liGPnc~Gii~p~~~~~~~~~~~~~~~G~va  156 (305)
T 2fp4_A           78 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRL-LRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIG  156 (305)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH-TTCSSCEEECSSSCEEEETTTEEEESSCGGGCCEEEEE
T ss_pred             ecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHH-HhcCCcEEEeCCCCeEecccccceeeccccCCCCCCEE
Confidence            99999999999999999999999999999988888888888 888 9999999999999998433456666667899999


Q ss_pred             EEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---
Q 020101          185 IVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---  261 (331)
Q Consensus       185 lisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---  261 (331)
                      +|||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|+.+.++++|+++++   
T Consensus       157 ~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~~~  236 (305)
T 2fp4_A          157 IVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGP  236 (305)
T ss_dssp             EEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCST
T ss_pred             EEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999877999999999999999999999999999998899999999876   


Q ss_pred             CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhcCC
Q 020101          262 TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL  329 (331)
Q Consensus       262 ~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~~~  329 (331)
                      ++||||+||+||+++.|+++||||++++...|++++++++|||+|+++++|++||+++++++|+..++
T Consensus       237 ~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~~~~  304 (305)
T 2fp4_A          237 KSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM  304 (305)
T ss_dssp             TCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEECSSTTCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence            59999999999999547779999999976678999999999999999999999999999999987654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=100.00  E-value=1.6e-70  Score=518.17  Aligned_cols=286  Identities=53%  Similarity=0.890  Sum_probs=249.2

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|.++.++|+|+|+||++|+.++++++++||+++++|||+..|+++.|+|+|++++|+++++++|++++|+|++.+++++
T Consensus         2 ~~~~~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~   81 (288)
T 1oi7_A            2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA   81 (288)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred             eecCCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence            56688899999999999999999999999999888999998667899999999999999866799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHHH
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEA  196 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~  196 (331)
                      ++|+++|++.+|++|+||++++.+++.+.+ ++++++++||||+|+++|.....+++|...+++|+||+|||||+++.++
T Consensus        82 ~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a-~~~gi~vigPNc~Gii~~~~~~~~~~~~~~~~~G~va~vsqSG~l~~~~  160 (288)
T 1oi7_A           82 LEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEA  160 (288)
T ss_dssp             HHHHHTTCSEEEECCSCCCHHHHHHHHHHH-HHHTCEEEESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEeCCCCeEEcCCCceeEEcccCCCCCCCEEEEECCHHHHHHH
Confidence            999999999989999999999888998888 7899999999999999998333344555567899999999999999999


Q ss_pred             HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCC
Q 020101          197 VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP  276 (331)
Q Consensus       197 ~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~  276 (331)
                      ++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|+++.++++|+++ +++||||+||+||+++
T Consensus       161 ~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~~~~~~~~~~~~~-~~~KPVv~~k~G~~~~  239 (288)
T 1oi7_A          161 AAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKD-HMKKPVVGFIGGRSAP  239 (288)
T ss_dssp             HHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHHHHHHHHHH-HCCSCEEEEESCC---
T ss_pred             HHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh-cCCCCEEEEEecCCCC
Confidence            999999999999999999998778999999999999999999999999999888889999987 6799999999999995


Q ss_pred             CCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101          277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  324 (331)
Q Consensus       277 ~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~  324 (331)
                      .++++||||++++...|++++++++|||+|+++++|++||+++++++|
T Consensus       240 ~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~  287 (288)
T 1oi7_A          240 KGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL  287 (288)
T ss_dssp             ---------------CCSHHHHHHHHHHHTCCBCSSHHHHHHHHHHHH
T ss_pred             ccccCcchhhcccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence            477799999999766789999999999999999999999999999876

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=2.2e-70  Score=519.44  Aligned_cols=290  Identities=52%  Similarity=0.898  Sum_probs=247.0

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCC-CCEEEEecChhhH
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETK-ANASAIYVPPPFA  112 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~-iDlaii~vp~~~~  112 (331)
                      ++.+| ++.++|+|+|+||++|+.++++++++||+++++|||+..|+++.|+|+|+|++|++++++ +|++++|+|++.+
T Consensus         6 ~~~l~-~~~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~   84 (297)
T 2yv2_A            6 MAVLV-DSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFA   84 (297)
T ss_dssp             ---CC-STTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGH
T ss_pred             hhHhh-CCCCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHH
Confidence            44555 456677888999999999999999999998889999976678999999999999997544 9999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHH
Q 020101          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTL  192 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~  192 (331)
                      ++++++|+++|++.+|++|+||++++.+++.+++ +++|++++||||+|+++|.....+++|...+++|+||+|||||++
T Consensus        85 ~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A-~~~gi~viGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l  163 (297)
T 2yv2_A           85 PDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYA-RQKGATIIGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTL  163 (297)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHH-HHHTCEEECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESCHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEcCCCCeeEcccccceeecccCCCCCCCEEEEECCHHH
Confidence            9999999999999889999999999888999988 789999999999999999843344455556789999999999999


Q ss_pred             HHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeC
Q 020101          193 TYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAG  272 (331)
Q Consensus       193 ~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~G  272 (331)
                      +.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|+++.++++|+++.+++||||+||+|
T Consensus       164 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~~~~~~~~~~~~~~~~~KPVv~~k~G  243 (297)
T 2yv2_A          164 TYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAG  243 (297)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHHHHHHHHHTTSCCSCEEEEESC
T ss_pred             HHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhccCCCCEEEEEeC
Confidence            99999999999999999999999987788999999999999999999999999999888999999987789999999999


Q ss_pred             CCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101          273 LTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  325 (331)
Q Consensus       273 rs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~  325 (331)
                      |+++.++++||||++++.+.|++++++++|||+|+++++|++||+++++++|+
T Consensus       244 ~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~~  296 (297)
T 2yv2_A          244 RTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALR  296 (297)
T ss_dssp             CC------------------CSHHHHHHHHHTTTCEEESSGGGHHHHHHHHC-
T ss_pred             CCCccccccCCccccccCCCCCHHHHHHHHHHcCCeEeCCHHHHHHHHHHHhh
Confidence            99954777999999997667899999999999999999999999999998763

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=7.6e-70  Score=515.00  Aligned_cols=288  Identities=49%  Similarity=0.838  Sum_probs=245.8

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      |..+|.| .++++|+|+||++|+.++++++++||+++++|||+..++++.|+|+|++++|+++++++|++++|+|++.++
T Consensus         6 l~~l~~~-~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~   84 (294)
T 2yv1_A            6 KMILLDE-NTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAK   84 (294)
T ss_dssp             -CCSSCT-TCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHH
T ss_pred             HHHHhCC-CCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHH
Confidence            6677755 456778899999999999999999999888999997657899999999999999855799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHHH
Q 020101          114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLT  193 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~  193 (331)
                      +++++|+++|++.+|++|+||++++.+++.+++ +++|++++||||+|+++|.....+++|...+++|+||+|||||+++
T Consensus        85 ~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A-~~~gi~viGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l~  163 (294)
T 2yv1_A           85 DAVFEAIDAGIELIVVITEHIPVHDTMEFVNYA-EDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLT  163 (294)
T ss_dssp             HHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHH-HHHTCEEECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCSHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEcCCCceeeccCcceeeecccCCCCCCCEEEEECCHHHH
Confidence            999999999999889999999999988999988 8899999999999999998433445555567899999999999999


Q ss_pred             HHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCC
Q 020101          194 YEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGL  273 (331)
Q Consensus       194 ~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Gr  273 (331)
                      .++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++  ++||||+||+||
T Consensus       164 ~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g~~~~~~~~~~~~--~~KPVv~~k~G~  241 (294)
T 2yv1_A          164 YEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQ  241 (294)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHHHHHHHHTT--CSSCEEEEEECC
T ss_pred             HHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh--CCCCEEEEEecC
Confidence            999999999999999999999998778999999999999999999999999999888888888876  689999999999


Q ss_pred             CCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101          274 TAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  325 (331)
Q Consensus       274 s~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~  325 (331)
                      +++.++++||||++++...|++++++++|||+|+++++|++||+++++++|+
T Consensus       242 ~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~~  293 (294)
T 2yv1_A          242 SAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILG  293 (294)
T ss_dssp             -------------------CCHHHHHHHHHHHTCEECSSTTHHHHHHHHHHC
T ss_pred             CCCccccCCchhhhccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHhc
Confidence            9954777999999997667899999999999999999999999999998774

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=100.00  E-value=6.1e-69  Score=507.46  Aligned_cols=286  Identities=66%  Similarity=1.088  Sum_probs=264.7

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|.++.++|+|+|+||++|+.++++++++|++++++|||+..|+++.|+|+|++++|+++++++|++++|+|++.+++++
T Consensus         2 ~~~~~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~   81 (288)
T 2nu8_A            2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI   81 (288)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred             eecCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence            56788899999999999999999999999999999999986456789999999999999755799999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHHH
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEA  196 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~  196 (331)
                      ++|+++|++.+|++|+|+++++.+++.+.+ +++|++++||||+|++||.....+++|...+++|+||+|||||+++.++
T Consensus        82 ~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A-~~~gv~liGPNc~Gi~~p~~~~~~~~~~~~~~~G~i~~vsqSG~l~~~~  160 (288)
T 2nu8_A           82 LEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIGPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEA  160 (288)
T ss_dssp             HHHHHTTCSEEEECCCCCCHHHHHHHHHHH-HHHTCEEECSSCCEEEETTTEEEESSCTTSCCEEEEEEEESCHHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEecCCcceecCCcceeEecccCCCCCCCEEEEECcHHHHHHH
Confidence            999999999989999999999888999888 8899999999999999998333446676668899999999999999999


Q ss_pred             HHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCC
Q 020101          197 VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP  276 (331)
Q Consensus       197 ~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~  276 (331)
                      ++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|++++++++|+++ +++||||+||+||+++
T Consensus       161 ~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~~~~~~~~~-~~~KPVv~~k~G~~~~  239 (288)
T 2nu8_A          161 VKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-HVTKPVVGYIAGVTAP  239 (288)
T ss_dssp             HHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHH-HCCSCEEEEEECTTCC
T ss_pred             HHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh-cCCCCEEEEEeCCCCc
Confidence            999999999999999999998779999999999999999999999999999999999999998 6799999999999995


Q ss_pred             CCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q 020101          277 PGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF  324 (331)
Q Consensus       277 ~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~  324 (331)
                      .|+++||||++++...|++++++++|||+|+++++|++||+++++.+|
T Consensus       240 ~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~  287 (288)
T 2nu8_A          240 KGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVL  287 (288)
T ss_dssp             TTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEECSSGGGHHHHHHHHC
T ss_pred             ccccccchhhhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence            477799999999777789999999999999999999999999999765

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=100.00  E-value=3.8e-63  Score=475.09  Aligned_cols=283  Identities=29%  Similarity=0.480  Sum_probs=232.7

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHc-------CCeEEEEeCCCCCC--cee------cCcccccCHHHhhhcC-CC
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEY-------GTKMVGGVTPKKGG--TEH------LGLPVFNTVAEAKAET-KA  100 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~-------g~~iv~~VnP~~~g--~~i------~G~p~y~sl~dl~~~~-~i  100 (331)
                      .|.++++||+|.|++||    ..+++.++       +.+++++|||+..|  +++      .|+|+|+|++|+++++ ++
T Consensus         5 ~l~~~~tkviV~G~~Gk----~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~   80 (334)
T 3mwd_B            5 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV   80 (334)
T ss_dssp             CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred             cccCCCCeEEEECCchH----HHHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCC
Confidence            45578899999999876    34555554       47799999999864  444      3899999999998764 58


Q ss_pred             CEEEEecChhhHHHHHHHHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccc--------
Q 020101          101 NASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------  171 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v~~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~--------  171 (331)
                      |++|+|+|++.+.+.+.++++ +|++.++++|+||+|++++++.+++ +++|+|++||||+|++||..+.++        
T Consensus        81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a-~~~g~rliGPNc~Gii~p~~~~ig~~~~~~~a  159 (334)
T 3mwd_B           81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKA-DQKGVTIIGPATVGGIKPGCFKIGNTGGMLDN  159 (334)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHH-HHHTCEEECSSCCCEEETTTEECTTTTCSHHH
T ss_pred             cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEEccCCccccCcchhhcccccccccc
Confidence            999999999999877766666 9999999999999999988999888 899999999999999999732222        


Q ss_pred             cCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 020101          172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (331)
Q Consensus       172 ~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (331)
                      .+|...+++|+||+|||||+++.++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|+||+|..|.  .
T Consensus       160 ~~~~~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~--~  237 (334)
T 3mwd_B          160 ILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGT--E  237 (334)
T ss_dssp             HHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSS--H
T ss_pred             cccccCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCCh--H
Confidence            23445689999999999999999999999999999999999999955599999999999999999999999887664  4


Q ss_pred             HHHHHHHHhC---CCCCEEEEEeCCCCCC---CCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101          252 DAAALIKESG---TEKPIVAFIAGLTAPP---GRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  325 (331)
Q Consensus       252 ~~~~f~~a~r---~~KPVvv~k~Grs~~~---g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~  325 (331)
                      + ++|++++|   ++||||+||+||+++.   ++++|||||+++.+.|++++++++|||+|+++++|++||+++++++|+
T Consensus       238 e-~~~~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v~~~~el~~~~~~~~~  316 (334)
T 3mwd_B          238 E-YKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE  316 (334)
T ss_dssp             H-HHHHHHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHH
T ss_pred             H-HHHHHHHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHH
Confidence            5 78888775   8999999999999972   445899999996555666699999999999999999999999999987


Q ss_pred             hc
Q 020101          326 QR  327 (331)
Q Consensus       326 ~~  327 (331)
                      +|
T Consensus       317 ~l  318 (334)
T 3mwd_B          317 DL  318 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=100.00  E-value=1.3e-61  Score=483.93  Aligned_cols=270  Identities=21%  Similarity=0.335  Sum_probs=230.3

Q ss_pred             CcccccCCCCeEEEEEcCCCCC---CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           33 PAPAVFVDKNTRVICQGITGKN---GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        33 ~l~~ll~~k~~~VaIvGasgk~---G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +|+.+|.|++  |+|||+|+++   |+.++++++++|...+++|||+.  +++.|+|||+|++|+|+  .+|++++++|+
T Consensus         1 ~l~~l~~p~s--iAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~--~~i~G~~~y~sl~~lp~--~~Dlavi~vp~   74 (457)
T 2csu_A            1 MLDYFFNPKG--IAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPK   74 (457)
T ss_dssp             CCCTTTSCSE--EEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCH
T ss_pred             ChhHhcCCCe--EEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCC--CeECCEeccCCHHHcCC--CCCEEEEecCH
Confidence            3788998766  5679999765   67788899888622445999996  89999999999999998  79999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhH------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGR  182 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~------~~~l~~~a~~~~gi~viGPnc~Gi~~p~-~~~~~~~~~~~~~~G~  182 (331)
                      +.+++++++|+++|+|.+|++++||+|.+      .+++.+++ +++|++++||||+|+++|. +++++|.|.. ++ |+
T Consensus        75 ~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a-~~~g~~viGPnc~Gv~~~~~~~~~~~~~~~-~~-G~  151 (457)
T 2csu_A           75 RFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIA-HKYGMRIIGPNCVGIMNTHVDLNATFITVA-KK-GN  151 (457)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHH-HHHTCEEECSSCCEEEEGGGTEEEESSCCC-EE-CS
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHH-HHcCCEEEcCCcceEEccCCCceeeecCCC-CC-CC
Confidence            99999999999999999999999998732      45777777 8999999999999999999 7999998764 34 99


Q ss_pred             EEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-
Q 020101          183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-  261 (331)
Q Consensus       183 valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-  261 (331)
                      ||+|||||+++.++++|+.++|+|||++||+||++  |+++.|+|+||.+||+|++|++|+|++    .|+++|++++| 
T Consensus       152 v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~--~~~~~d~l~~~~~D~~t~~I~l~~E~i----~~~~~f~~~a~~  225 (457)
T 2csu_A          152 VAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMA--DVDFAELMEYLADTEEDKAIALYIEGV----RNGKKFMEVAKR  225 (457)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCC--SSCHHHHHHHHTTCSSCCEEEEEESCC----SCHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcC--CCCHHHHHHHHhcCCCCCEEEEEEecC----CCHHHHHHHHHH
Confidence            99999999999999999999999999999999997  999999999999999999999999985    47899999887 


Q ss_pred             --CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q 020101          262 --TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE  322 (331)
Q Consensus       262 --~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a  322 (331)
                        ++||||++|+||+++ |++  +||||+++    |++++++++|||+|++++++++|+.++.+.
T Consensus       226 ~~~~KPVv~~k~G~~~~-g~~aa~~Htgala----g~~~~~~AafRqaGv~~v~~~~El~~~~~~  285 (457)
T 2csu_A          226 VTKKKPIIALKAGKSES-GARAASSHTGSLA----GSWKIYEAAFKQSGVLVANTIDEMLSMARA  285 (457)
T ss_dssp             HHHHSCEEEEECC-----------------------CHHHHHHHHHHTTCEEESSHHHHHHHHTT
T ss_pred             hcCCCCEEEEEcCCCcc-ccchhhcccCccC----CcHHHHHHHHHhCCCeEECCHHHHHHHHHH
Confidence              789999999999999 776  79999999    899999999999999999999999998775

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.6e-59  Score=488.17  Aligned_cols=286  Identities=30%  Similarity=0.478  Sum_probs=237.9

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcC-------CeEEEEeCCCCCC--cee------cCcccccCHHHhhhcC-CC
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKGG--TEH------LGLPVFNTVAEAKAET-KA  100 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g-------~~iv~~VnP~~~g--~~i------~G~p~y~sl~dl~~~~-~i  100 (331)
                      .|.++++||+|.|++|+    +.++++++|       .+++++|||...|  .++      .|+|||+|++|+++++ ++
T Consensus       491 ~l~~~~trviV~G~tg~----~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~~~Gvp~y~sv~ea~~~~p~~  566 (829)
T 3pff_A          491 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV  566 (829)
T ss_dssp             CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred             eeecCCCeEEEECCcHH----HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCCcCCcccCCcHHHHhhccCCC
Confidence            45588899999999865    677777765       5699999999864  233      4799999999998763 58


Q ss_pred             CEEEEecChhhHHHHHHHHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccc--------
Q 020101          101 NASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------  171 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v~~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~--------  171 (331)
                      |++|+++|++.+++++++|++ +|++.++++|+||+|.++++|.++| +++|+|++||||+|+++|....++        
T Consensus       567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A-~~~g~rliGPNc~Gii~p~~~~ig~~~g~lna  645 (829)
T 3pff_A          567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKA-DQKGVTIIGPATVGGIKPGCFKIGNTGGMLDN  645 (829)
T ss_dssp             CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHH-HHHTCEEECSSCCCEEETTTEECTTTTCSHHH
T ss_pred             cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHH-HHcCCEEEcCCCcccCcccccccccccccccc
Confidence            999999999999999999999 9999999999999999888999988 899999999999999999843333        


Q ss_pred             cCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 020101          172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE  251 (331)
Q Consensus       172 ~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~  251 (331)
                      ++|...+++|+||+|||||+++.++++|+.++|+|||++||+||+.+.|+++.|+|+||.+||+|++|+||+|..|+.+.
T Consensus       646 ~~~~~~~~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~  725 (829)
T 3pff_A          646 ILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY  725 (829)
T ss_dssp             HHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHH
T ss_pred             ccccccCCCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHH
Confidence            34555689999999999999999999999999999999999999966699999999999999999999999996555444


Q ss_pred             HHHHHHHHhCCCCCEEEEEeCCCCCC---CCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhc
Q 020101          252 DAAALIKESGTEKPIVAFIAGLTAPP---GRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR  327 (331)
Q Consensus       252 ~~~~f~~a~r~~KPVvv~k~Grs~~~---g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~~~  327 (331)
                      ++.+++++.+++||||+||+|||++.   ++++|||||+++++.|++++++++|||+|+++++|++||+++++.+|++|
T Consensus       726 ~aA~~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~v~~~~el~~~~~~~~~~l  804 (829)
T 3pff_A          726 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDL  804 (829)
T ss_dssp             HHHHHHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHHHH
Confidence            44444433247899999999999983   45689999999666667779999999999999999999999999998754

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=100.00  E-value=4.7e-46  Score=371.62  Aligned_cols=210  Identities=21%  Similarity=0.318  Sum_probs=185.3

Q ss_pred             cCccccc---CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101           83 LGLPVFN---TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus        83 ~G~p~y~---sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      .++|+|+   ++.++++  .+|++||++|++.+++++++|+++|++ ++++|+||+.++++++.+.| +++|+|++||||
T Consensus        19 ~~~Pv~~~~~~~~~~p~--~~DlavI~vPa~~v~~~v~e~~~~Gv~-~viis~Gf~~~~~~~l~~~A-~~~g~rliGPNc   94 (480)
T 3dmy_A           19 QALTQVRRWDSACQKLP--DANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRA-REKGLLVMGPDC   94 (480)
T ss_dssp             -CCEEESSHHHHHHHST--TCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHH-HHTTCCEECSSC
T ss_pred             CCCcccchHHHHHhcCC--CCCEEEEecCHHHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHHHHH-HHcCCEEEecCc
Confidence            3566655   4555565  799999999999999999999999999 78899999988888899888 899999999999


Q ss_pred             CCcccCCCcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCC----CCCCCHHHHHHHhhcCCC
Q 020101          160 PGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP----FNGTNFVDCVTKFIADPQ  235 (331)
Q Consensus       160 ~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~----~~~v~~~d~l~~l~~Dp~  235 (331)
                       |++++.+++++|.+.  +++|+||+|||||+++.++++|+.++|+|||++||+||+.    +.|+++.|+|+||.+||+
T Consensus        95 -G~~~~~~~~~~f~~~--~~~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~  171 (480)
T 3dmy_A           95 -GTSMIAGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEK  171 (480)
T ss_dssp             -CEEEETTEEEESCCC--CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTT
T ss_pred             -cccccCCccccccCC--CCCCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCC
Confidence             888877677777653  5699999999999999999999999999999999999991    149999999999999999


Q ss_pred             ccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHh
Q 020101          236 TEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPA  314 (331)
Q Consensus       236 T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~  314 (331)
                      |++|++|+|++.  +...++|++++| ++||||++|+||++.                |        |||+|+++++|++
T Consensus       172 T~~I~ly~E~~~--e~~~~~f~~~ar~~~KPVV~~k~Grs~~----------------g--------~r~~Gvirv~~~~  225 (480)
T 3dmy_A          172 SEVLAFVSKPPA--EAVRLKIVNAMKATGKPTVALFLGYTPA----------------V--------ARDENVWFASSLD  225 (480)
T ss_dssp             CCEEEEEESCCC--HHHHHHHHHHHHHHCSCEEEEETTCCCS----------------S--------SEETTEEEESSHH
T ss_pred             CCEEEEEEecCC--cHHHHHHHHHHHhCCCCEEEEEeCCCCc----------------c--------cccCCEEEECCHH
Confidence            999999999842  334589999986 899999999999988                3        8999999999999


Q ss_pred             HHHHHHHHHHH
Q 020101          315 KIGAAMLEVFK  325 (331)
Q Consensus       315 el~~~~~a~~~  325 (331)
                      ||+++++++..
T Consensus       226 el~~~a~~l~~  236 (480)
T 3dmy_A          226 EAARLACLLSR  236 (480)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999997654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=99.90  E-value=1.4e-24  Score=183.67  Aligned_cols=123  Identities=20%  Similarity=0.267  Sum_probs=105.1

Q ss_pred             ccccc-CCCCeEEEEEcCC---CCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVF-VDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll-~~k~~~VaIvGas---gk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |+.+| .|++  |+|||+|   +++|+.++++|++.||+ +++|||+..++++.|+++|+|++|+++  ++|++++++|+
T Consensus         6 l~~ll~~p~~--vaVvGas~~~g~~G~~~~~~l~~~G~~-v~~vnp~~~~~~i~G~~~~~sl~el~~--~vDlavi~vp~   80 (140)
T 1iuk_A            6 LRAYLSQAKT--IAVLGAHKDPSRPAHYVPRYLREQGYR-VLPVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPP   80 (140)
T ss_dssp             HHHHHHHCCE--EEEETCCSSTTSHHHHHHHHHHHTTCE-EEEECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCH
T ss_pred             HHHHHcCCCE--EEEECCCCCCCChHHHHHHHHHHCCCE-EEEeCCCcccCcCCCEEecCCHHHCCC--CCCEEEEEeCH
Confidence            78889 6655  6779999   45677888999999998 459999943489999999999999998  89999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      +.+++++++|.++|++.+|+ ++|+.+   +++.+.+ +++|++++||||+|+++|.
T Consensus        81 ~~~~~v~~~~~~~gi~~i~~-~~g~~~---~~~~~~a-~~~Gir~vgpnc~g~~~~~  132 (140)
T 1iuk_A           81 SALMDHLPEVLALRPGLVWL-QSGIRH---PEFEKAL-KEAGIPVVADRCLMVEHKR  132 (140)
T ss_dssp             HHHTTTHHHHHHHCCSCEEE-CTTCCC---HHHHHHH-HHTTCCEEESCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEE-cCCcCH---HHHHHHH-HHcCCEEEcCCccceEChh
Confidence            99999999999999999775 667654   3455566 7899999999999999986

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=99.89  E-value=9e-24  Score=179.72  Aligned_cols=124  Identities=15%  Similarity=0.201  Sum_probs=107.0

Q ss_pred             CcccccC-CCCeEEEEEcCC---CCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC
Q 020101           33 PAPAVFV-DKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        33 ~l~~ll~-~k~~~VaIvGas---gk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +|+.+|. |++  |+|||+|   |++|+.++++|++.||++ ++|||+..|+++.|.++|+|++|+++  ++|++++++|
T Consensus         5 ~l~~ll~~p~~--IavIGas~~~g~~G~~~~~~L~~~G~~v-~~vnp~~~g~~i~G~~~~~sl~el~~--~~Dlvii~vp   79 (145)
T 2duw_A            5 DIAGILTSTRT--IALVGASDKPDRPSYRVMKYLLDQGYHV-IPVSPKVAGKTLLGQQGYATLADVPE--KVDMVDVFRN   79 (145)
T ss_dssp             SHHHHHHHCCC--EEEESCCSCTTSHHHHHHHHHHHHTCCE-EEECSSSTTSEETTEECCSSTTTCSS--CCSEEECCSC
T ss_pred             HHHHHHhCCCE--EEEECcCCCCCChHHHHHHHHHHCCCEE-EEeCCcccccccCCeeccCCHHHcCC--CCCEEEEEeC
Confidence            3889995 766  6779998   567788899999999985 49999986678999999999999997  7999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      ++.+++++++|+++|++.+|+.+..+    .+++.+.+ +++|++++||||+|+++|.
T Consensus        80 ~~~v~~v~~~~~~~g~~~i~i~~~~~----~~~l~~~a-~~~Gi~~igpnc~g~~~~~  132 (145)
T 2duw_A           80 SEAAWGVAQEAIAIGAKTLWLQLGVI----NEQAAVLA-REAGLSVVMDRCPAIELPR  132 (145)
T ss_dssp             STHHHHHHHHHHHHTCCEEECCTTCC----CHHHHHHH-HTTTCEEECSCCHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCChH----HHHHHHHH-HHcCCEEEcCCeeeEEccc
Confidence            99999999999999999988765444    34555666 7999999999999999997

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.89  E-value=2.5e-23  Score=175.60  Aligned_cols=119  Identities=18%  Similarity=0.196  Sum_probs=99.3

Q ss_pred             cccCCCCeEEEEEcCC---CCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           36 AVFVDKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        36 ~ll~~k~~~VaIvGas---gk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      .+|.|+  +|+|||+|   |++|+.+++++++.||++ ++|||+.  +++.|.++|+|++|+++  ++|++++++|++.+
T Consensus        10 ~l~~p~--~IavIGaS~~~g~~G~~~~~~L~~~G~~V-~~vnp~~--~~i~G~~~~~s~~el~~--~vDlvii~vp~~~v   82 (138)
T 1y81_A           10 NSKEFR--KIALVGASKNPAKYGNIILKDLLSKGFEV-LPVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVG   82 (138)
T ss_dssp             ----CC--EEEEETCCSCTTSHHHHHHHHHHHTTCEE-EEECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHH
T ss_pred             cccCCC--eEEEEeecCCCCCHHHHHHHHHHHCCCEE-EEeCCCC--CeECCeeecCCHHHhCC--CCCEEEEEeCHHHH
Confidence            466554  47789998   566778889999999985 4999997  78999999999999998  79999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      ++++++|+++|++.+|++++++    .+++.+.+ +++|++++||||+|+++|.
T Consensus        83 ~~v~~~~~~~g~~~i~~~~~~~----~~~l~~~a-~~~Gi~~igpnc~g~~~~~  131 (138)
T 1y81_A           83 LQVAKEAVEAGFKKLWFQPGAE----SEEIRRFL-EKAGVEYSFGRCIMVETSN  131 (138)
T ss_dssp             HHHHHHHHHTTCCEEEECTTSC----CHHHHHHH-HHHTCEEECSCCHHHHC--
T ss_pred             HHHHHHHHHcCCCEEEEcCccH----HHHHHHHH-HHCCCEEEcCCcceEEccC
Confidence            9999999999999999877665    24556666 7889999999999999986

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=99.89  E-value=1.5e-23  Score=178.13  Aligned_cols=121  Identities=15%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             cccccC-CCCeEEEEEcCC---CCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVFV-DKNTRVICQGIT---GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll~-~k~~~VaIvGas---gk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |+.+|. |+  +|+|||+|   +++|+.++++|++.||++ ++|||+.  +++.|+++|++++|+++  ++|++++++|+
T Consensus        15 l~~ll~~p~--~iaVVGas~~~g~~G~~~~~~l~~~G~~v-~~Vnp~~--~~i~G~~~y~sl~~l~~--~vDlvvi~vp~   87 (144)
T 2d59_A           15 IREILTRYK--KIALVGASPKPERDANIVMKYLLEHGYDV-YPVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKP   87 (144)
T ss_dssp             HHHHHHHCC--EEEEETCCSCTTSHHHHHHHHHHHTTCEE-EEECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCH
T ss_pred             HHHHHcCCC--EEEEEccCCCCCchHHHHHHHHHHCCCEE-EEECCCC--CeECCeeccCCHHHcCC--CCCEEEEEeCH
Confidence            888994 65  46789998   466778889999999985 5999997  78999999999999998  79999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG  166 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~  166 (331)
                      +.+++++++|+++|++.+| +++|+.+   +++.+.+ +++|++++||||+|+++|.
T Consensus        88 ~~~~~vv~~~~~~gi~~i~-~~~g~~~---~~l~~~a-~~~Gi~vvGpnc~gv~~~~  139 (144)
T 2d59_A           88 KLTMEYVEQAIKKGAKVVW-FQYNTYN---REASKKA-DEAGLIIVANRCMMREHER  139 (144)
T ss_dssp             HHHHHHHHHHHHHTCSEEE-ECTTCCC---HHHHHHH-HHTTCEEEESCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEE-ECCCchH---HHHHHHH-HHcCCEEEcCCchhhcchh
Confidence            9999999999999999976 6777753   3455666 7899999999999999874

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=99.88  E-value=3.3e-23  Score=171.45  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCC---CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           44 RVICQGITGKN---GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        44 ~VaIvGasgk~---G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +|+|||||.++   |+.++++|++.||+++ ||||+.  +++.|.++|+|++|+|+   +|++++++|++.+++++++|.
T Consensus         6 siAVVGaS~~~~~~g~~v~~~L~~~g~~V~-pVnP~~--~~i~G~~~y~sl~dlp~---vDlavi~~p~~~v~~~v~e~~   79 (122)
T 3ff4_A            6 KTLILGATPETNRYAYLAAERLKSHGHEFI-PVGRKK--GEVLGKTIINERPVIEG---VDTVTLYINPQNQLSEYNYIL   79 (122)
T ss_dssp             CEEEETCCSCTTSHHHHHHHHHHHHTCCEE-EESSSC--SEETTEECBCSCCCCTT---CCEEEECSCHHHHGGGHHHHH
T ss_pred             EEEEEccCCCCCCHHHHHHHHHHHCCCeEE-EECCCC--CcCCCeeccCChHHCCC---CCEEEEEeCHHHHHHHHHHHH
Confidence            46679999765   5567889999999876 999998  89999999999999985   899999999999999999999


Q ss_pred             HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          121 EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      ++|+|.+| +++||.++   ++.+.| +++||+++| ||+|++.
T Consensus        80 ~~g~k~v~-~~~G~~~~---e~~~~a-~~~Girvv~-nC~gv~l  117 (122)
T 3ff4_A           80 SLKPKRVI-FNPGTENE---ELEEIL-SENGIEPVI-GCTLVML  117 (122)
T ss_dssp             HHCCSEEE-ECTTCCCH---HHHHHH-HHTTCEEEE-SCHHHHH
T ss_pred             hcCCCEEE-ECCCCChH---HHHHHH-HHcCCeEEC-CcCeEEe
Confidence            99999855 89999654   445556 789999996 9999875

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=99.47  E-value=1.5e-13  Score=128.90  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC---CCce--------ecCcccccCHHHhhhcCCCCEEEEe
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK---GGTE--------HLGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~---~g~~--------i~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      .++++||+|+||+|+||+.+++.+.+. ++++++.++++.   .|.+        ..|+|+|.+++++..  ++|++|+|
T Consensus        18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~--~aDVvIDF   95 (288)
T 3ijp_A           18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILDF   95 (288)
T ss_dssp             ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEEC
T ss_pred             ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhc--CCCEEEEc
Confidence            567899999999999999999998864 899998888753   2222        258899999999987  79999999


Q ss_pred             cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          107 VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      ++|+.+.+.++.|+++|++. |+.|+|+++++.++|.++| ++.+ .++.||.
T Consensus        96 T~p~a~~~~~~~~l~~Gv~v-ViGTTG~~~e~~~~L~~aa-~~~~-~~~a~N~  145 (288)
T 3ijp_A           96 SQPQASVLYANYAAQKSLIH-IIGTTGFSKTEEAQIADFA-KYTT-IVKSGNM  145 (288)
T ss_dssp             SCHHHHHHHHHHHHHHTCEE-EECCCCCCHHHHHHHHHHH-TTSE-EEECSCC
T ss_pred             CCHHHHHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHh-CcCC-EEEECCC
Confidence            99999999999999999997 5689999998888888887 5543 3788884

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=99.39  E-value=1.2e-12  Score=122.02  Aligned_cols=114  Identities=17%  Similarity=0.270  Sum_probs=94.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC---CCce-------ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK---GGTE-------HLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~---~g~~-------i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +.+||+|+||+|+||+.+++.+.+. ++++++.++++.   .|..       ..|+++|.+++++.+  ++|++|+|++|
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~--~~DVVIDfT~p   83 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCA--EADYLIDFTLP   83 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHH--HCSEEEECSCH
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhc--CCCEEEEcCCH
Confidence            3589999999999999999988875 789998888653   1211       127899999999987  69999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      +.+.+.++.|+++|++. |+.|+|+++++.++|.++| ++.+ .++.||.
T Consensus        84 ~a~~~~~~~al~~G~~v-VigTTG~s~~~~~~L~~aa-~~~~-vv~a~N~  130 (272)
T 4f3y_A           84 EGTLVHLDAALRHDVKL-VIGTTGFSEPQKAQLRAAG-EKIA-LVFSANM  130 (272)
T ss_dssp             HHHHHHHHHHHHHTCEE-EECCCCCCHHHHHHHHHHT-TTSE-EEECSCC
T ss_pred             HHHHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHh-ccCC-EEEECCC
Confidence            99999999999999997 5689999998888888877 5544 4778884

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=99.24  E-value=1.3e-11  Score=113.26  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=89.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~  121 (331)
                      .+||+|+|+ |+||+.+.+.+.+.+.++++.+++..  ....|+++|.+++++.   ++|++|+|++|+.+.+.++  ++
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~--~~~~gv~v~~dl~~l~---~~DVvIDft~p~a~~~~~~--l~   74 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP--KATTPYQQYQHIADVK---GADVAIDFSNPNLLFPLLD--ED   74 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC--C--CCSCBCSCTTTCT---TCSEEEECSCHHHHHHHHT--SC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc--cccCCCceeCCHHHHh---CCCEEEEeCChHHHHHHHH--Hh
Confidence            478999999 99999999998886449998899876  4457999999999986   5899999999999999987  88


Q ss_pred             cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          122 AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       122 ~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      +|++. |+.|+|+++++.++|.+++ ++.++ ++.||.
T Consensus        75 ~g~~v-VigTTG~s~e~~~~l~~aa-~~~~v-~~a~N~  109 (243)
T 3qy9_A           75 FHLPL-VVATTGEKEKLLNKLDELS-QNMPV-FFSANM  109 (243)
T ss_dssp             CCCCE-EECCCSSHHHHHHHHHHHT-TTSEE-EECSSC
T ss_pred             cCCce-EeCCCCCCHHHHHHHHHHH-hcCCE-EEECCc
Confidence            99997 5689999988888888877 55443 778885

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=99.23  E-value=1.9e-11  Score=113.91  Aligned_cols=118  Identities=18%  Similarity=0.239  Sum_probs=94.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCC---Cce--------ecCcccccCHHHhhhcCCCCEEEEec
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKG---GTE--------HLGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~---g~~--------i~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+.+||+|+|++|+||+.+.+.+.+ .++++++.+++...   +..        ..+++++.+++++..  ++|++|+|+
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~--~~DvVIDft   80 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFT   80 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECS
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc--CCCEEEEcC
Confidence            4668999999999999999998775 47888877776431   111        236778888988876  799999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccC-CCCc
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN-CPGV  162 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPn-c~Gi  162 (331)
                      +|+.+.+.++.|+++|++. ++.|+|+++++..+|.+.+ ++.+ .++.|| ++|+
T Consensus        81 ~p~~~~~~~~~a~~~G~~v-VigTtG~~~e~~~~L~~~a-~~~~-vv~a~N~siGv  133 (273)
T 1dih_A           81 RPEGTLNHLAFCRQHGKGM-VIGTTGFDEAGKQAIRDAA-ADIA-IVFAANFSVGV  133 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCEE-EECCCCCCHHHHHHHHHHT-TTSC-EEECSCCCHHH
T ss_pred             ChHHHHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHhc-CCCC-EEEEecCcHHH
Confidence            9999999999999999996 6689999998888888776 5554 577888 4444

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=99.22  E-value=6.9e-12  Score=112.69  Aligned_cols=109  Identities=13%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             CCCCCCCCC--CCccccc-CCCCeEEEEEcCCCCCCcHHHHHH--HHcCCeEEEEe--CCC-CCCc-eecCccccc--CH
Q 020101           23 QSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGV--TPK-KGGT-EHLGLPVFN--TV   91 (331)
Q Consensus        23 ~~~~~~~~~--~~l~~ll-~~k~~~VaIvGasgk~G~~~~~~l--~~~g~~iv~~V--nP~-~~g~-~i~G~p~y~--sl   91 (331)
                      |.-+|+..+  ..++.+| .++..+|+|+|| |+.|+.+++.+  .+.++++++.+  ||+ ..|. .+.|+|+|.  ++
T Consensus        62 ~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL  140 (212)
T 3keo_A           62 RGFGYDVKKLMNFFAEILNDHSTTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTI  140 (212)
T ss_dssp             TSSSEEHHHHHHHHHHHTTTTSCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGH
T ss_pred             CCCCEEHHHHHHHHHHHhCCCCCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHH
Confidence            444664432  2246667 567789999999 99999988863  34589998874  566 6677 789999996  45


Q ss_pred             HHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +++.++.++|.+++++|...++++++.|.+.||++||+|++
T Consensus       141 ~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap  181 (212)
T 3keo_A          141 NDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSP  181 (212)
T ss_dssp             HHHC-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSS
T ss_pred             HHHHHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCC
Confidence            55556678999999999999999999999999999999998

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=99.18  E-value=1.4e-10  Score=106.42  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~  121 (331)
                      +||+|+|++|+||+.+.+.+.+. ++++++.+++.            .+++++.. .++|++|+|++|+.+.+.++.|++
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~------------~dl~~~~~-~~~DvvIDfT~p~a~~~~~~~a~~   67 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG------------DPLSLLTD-GNTEVVIDFTHPDVVMGNLEFLID   67 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT------------CCTHHHHH-TTCCEEEECSCTTTHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC------------CCHHHHhc-cCCcEEEEccChHHHHHHHHHHHH
Confidence            47899999999999999988875 89999888864            23556554 268999999999999999999999


Q ss_pred             cCCcEEEEecCCCChhHHHHHHHHHhccC-CcE-EEccCC
Q 020101          122 AELDLVVCITEGIPQHDMVRVKAALNNQS-KTR-LVGPNC  159 (331)
Q Consensus       122 ~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~-gi~-viGPnc  159 (331)
                      +|++. |+.|+|+++++..+|.+++ ++. ++. ++.||.
T Consensus        68 ~g~~~-VigTTG~~~e~~~~l~~aa-~~~~~~~vv~a~N~  105 (245)
T 1p9l_A           68 NGIHA-VVGTTGFTAERFQQVESWL-VAKPNTSVLIAPNF  105 (245)
T ss_dssp             TTCEE-EECCCCCCHHHHHHHHHHH-HTSTTCEEEECSCC
T ss_pred             cCCCE-EEcCCCCCHHHHHHHHHHH-HhCCCCCEEEECCc
Confidence            99997 6689999998888888877 544 665 778883

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.04  E-value=7.1e-10  Score=106.16  Aligned_cols=123  Identities=17%  Similarity=0.151  Sum_probs=87.9

Q ss_pred             cccccC--CCCeEEEEEcCCCCCCcHHHHHHHH--------cCCeEEEEeCCCCCCc----eecCcc-cccCHHHhhhcC
Q 020101           34 APAVFV--DKNTRVICQGITGKNGTFHTEQAIE--------YGTKMVGGVTPKKGGT----EHLGLP-VFNTVAEAKAET   98 (331)
Q Consensus        34 l~~ll~--~k~~~VaIvGasgk~G~~~~~~l~~--------~g~~iv~~VnP~~~g~----~i~G~p-~y~sl~dl~~~~   98 (331)
                      .++++.  .|.+||+|||+ |.+|+.+++.+..        .+.++++.+|+.....    +.+|++ +|.+++++.+++
T Consensus        15 ~~~~~~~~MkkirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~   93 (393)
T 4fb5_A           15 TENLYFQSMKPLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADP   93 (393)
T ss_dssp             ---------CCCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCT
T ss_pred             ccCccccCCCCccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCC
Confidence            455553  36789999999 9999988775543        2578998888876321    135764 899999999877


Q ss_pred             CCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101           99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus        99 ~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      ++|+|+|+||+..+.+.+.+|+++|.+.++=-.-..+.++.++|.+++ +++|+. .+|.|
T Consensus        94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~l~vg~~  153 (393)
T 4fb5_A           94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATA-ERSGKVAALGYN  153 (393)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH-HHSSSCEEECCG
T ss_pred             CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhH-HhcCCccccccc
Confidence            899999999999999999999999988633111145667888898888 677754 55544

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.03  E-value=7e-10  Score=105.49  Aligned_cols=112  Identities=15%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhc-CCCCEEEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~  117 (331)
                      +.+||+|||+ |++|+ .+++.+.+. ++++++.+++..   +..|++.|.+++++.++ +++|+++|++|+..+.+.+.
T Consensus        24 ~~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~---~~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~   99 (330)
T 4ew6_A           24 SPINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG---TVEGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY   99 (330)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC---CCTTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred             CCceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh---hhcCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            5689999999 99998 688888875 789998898875   34789999999999986 68999999999999999999


Q ss_pred             HHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          118 EAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +|+++|++. ++=.+ ..+.++.++|.+.+ +++|+. .++.+
T Consensus       100 ~al~aGkhV-l~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  140 (330)
T 4ew6_A          100 KALVAGKHV-FLEKPPGATLSEVADLEALA-NKQGASLFASWH  140 (330)
T ss_dssp             HHHHTTCEE-EECSSSCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHcCCcE-EEeCCCCCCHHHHHHHHHHH-HhcCCeEEEEeh
Confidence            999999776 44222 45667888888887 677754 44433

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.02  E-value=1.9e-09  Score=101.82  Aligned_cols=115  Identities=15%  Similarity=0.118  Sum_probs=91.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc----eecCcccccCHHHhh--------hcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNTVAEAK--------AETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~--------~~~~iDlaii~vp~  109 (331)
                      .++|+|||+.|.+|+.+++.+.+.+.++++.+|++....    ...+.++|.+++++.        ++.++|+++|+||+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~   82 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN   82 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence            578999999788999999999888889998888775321    134678999999998        45689999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          110 PFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      ..+.+.+.+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .++.+
T Consensus        83 ~~H~~~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  131 (312)
T 3o9z_A           83 HLHYPQIRMALRLGANA-LSEKPLVLWPEEIARLKELE-ARTGRRVYTVLQ  131 (312)
T ss_dssp             GGHHHHHHHHHHTTCEE-EECSSSCSCHHHHHHHHHHH-HHHCCCEEECCG
T ss_pred             hhhHHHHHHHHHCCCeE-EEECCCCCCHHHHHHHHHHH-HHcCCEEEEEee
Confidence            99999999999999875 44222 45667888888888 677765 45544

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.96  E-value=1.5e-09  Score=103.30  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=89.0

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHH-HHHHHHc-CCeEEEEeCCCCCC-c---eecCcc-cccCHHHhhhcCCCCEEEEecC
Q 020101           36 AVFVDKNTRVICQGITGKNGTFH-TEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~-~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      .++..+.+||+|||+ |++|+.+ .+.+.+. ++++++.+|++... +   +-+|+| +|.+++++.++.++|+++|+||
T Consensus        17 n~~~~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP   95 (350)
T 4had_A           17 NLYFQSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLP   95 (350)
T ss_dssp             -----CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSC
T ss_pred             cccccCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCC
Confidence            444556799999999 9999764 5677765 78999888887521 1   135775 8999999998778999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +..+.+.+.+|+++|.+. ++=-| ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        96 ~~~H~~~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~~~~l~v~~~  145 (350)
T 4had_A           96 TSQHIEWSIKAADAGKHV-VCEKPLALKAGDIDAVIAAR-DRNKVVVTEAYM  145 (350)
T ss_dssp             GGGHHHHHHHHHHTTCEE-EECSCCCSSGGGGHHHHHHH-HHHTCCEEECCG
T ss_pred             CchhHHHHHHHHhcCCEE-EEeCCcccchhhHHHHHHHH-HHcCCceeEeee
Confidence            999999999999999876 44222 45667788888887 666654 55544

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.96  E-value=6e-09  Score=98.60  Aligned_cols=115  Identities=9%  Similarity=0.007  Sum_probs=90.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ |++|+.+++.+.+. ++++++.+|++... +   +..|++ +|.+++++.++.++|++++++|+..+.+
T Consensus         4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   82 (329)
T 3evn_A            4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK   82 (329)
T ss_dssp             -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            5689999999 99999999888775 67888777776531 1   235776 8999999998668999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+|+++|.+. ++=-+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        83 ~~~~al~aGk~V-l~EKP~a~~~~e~~~l~~~a-~~~~~~~~v~~~  126 (329)
T 3evn_A           83 VAKAALLAGKHV-LVEKPFTLTYDQANELFALA-ESCNLFLMEAQK  126 (329)
T ss_dssp             HHHHHHHTTCEE-EEESSCCSSHHHHHHHHHHH-HHTTCCEEEECS
T ss_pred             HHHHHHHCCCeE-EEccCCcCCHHHHHHHHHHH-HHcCCEEEEEEc
Confidence            999999999876 44333 56677888888888 677765 45554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.95  E-value=3.4e-09  Score=101.19  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=93.3

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ..+.++|+|||+ |++|+.+++.+.+.  ++++++.+|++... +   +..|++.|.+++++.++.++|++++++|+..+
T Consensus        10 ~~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           10 TDRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             CSSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred             CCCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence            356799999999 99999999998876  78899888887521 1   13588999999999876689999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          113 AAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+.+|+++|.+. ++-.+ ..+.++..+|.+.+ +++|+. .+|.+
T Consensus        89 ~~~~~~al~~gk~v-~~EKP~a~~~~~~~~l~~~a-~~~g~~~~v~~~  134 (354)
T 3q2i_A           89 PTQSIECSEAGFHV-MTEKPMATRWEDGLEMVKAA-DKAKKHLFVVKQ  134 (354)
T ss_dssp             HHHHHHHHHTTCEE-EECSSSCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHHHHHHCCCCE-EEeCCCcCCHHHHHHHHHHH-HHhCCeEEEEEc
Confidence            99999999999765 54333 56677888888887 666755 45544

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.94  E-value=2.4e-09  Score=101.75  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +.++|+|||+ |++|+.+++.+.+. ++++++.+|++... +   +..|.++|.+++++.++.++|++++++|+..+.+.
T Consensus         3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   81 (344)
T 3euw_A            3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDL   81 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHH
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHH
Confidence            4689999999 99999999998886 78888888876521 1   13578899999999987789999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+|+++|.+. ++-.+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        82 ~~~al~~gk~v-~~EKP~~~~~~~~~~l~~~a-~~~g~~~~v~~~  124 (344)
T 3euw_A           82 ITRAVERGIPA-LCEKPIDLDIEMVRACKEKI-GDGASKVMLGFN  124 (344)
T ss_dssp             HHHHHHTTCCE-EECSCSCSCHHHHHHHHHHH-GGGGGGEEECCG
T ss_pred             HHHHHHcCCcE-EEECCCCCCHHHHHHHHHHH-HhcCCeEEecch
Confidence            99999999886 44444 66778888888888 677754 44544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.94  E-value=1.6e-09  Score=103.51  Aligned_cols=115  Identities=13%  Similarity=0.145  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +.++|+|||+ |++|+.+++.+.+. ++++++.+|++... +   +..|++.|.+++++.++.++|++++++|+..+.+.
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~   82 (354)
T 3db2_A            4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV   82 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            4689999999 99999999999886 78999888887521 1   13588999999999976689999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+|+++|.+. ++-.+ ..+.++.++|.+.+ +++|+. .+|.|
T Consensus        83 ~~~al~~gk~v-l~EKP~~~~~~~~~~l~~~a-~~~~~~~~v~~~  125 (354)
T 3db2_A           83 IEQCARSGKHI-YVEKPISVSLDHAQRIDQVI-KETGVKFLCGHS  125 (354)
T ss_dssp             HHHHHHTTCEE-EEESSSCSSHHHHHHHHHHH-HHHCCCEEEECG
T ss_pred             HHHHHHcCCEE-EEccCCCCCHHHHHHHHHHH-HHcCCeEEEeec
Confidence            99999999876 44344 66778888888887 666654 55544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.93  E-value=5.2e-09  Score=99.17  Aligned_cols=115  Identities=8%  Similarity=-0.030  Sum_probs=91.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCc-ccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ |++|+.+++.+.+. ++++++.+|++... +   +..|+ .+|.+++++.++.++|++++++|+..+.+
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   82 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS   82 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH
Confidence            5689999999 99999999999885 78898888887521 1   13577 48999999988668999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+|+++|.+. ++=.+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        83 ~~~~al~~gk~v-l~EKP~~~~~~e~~~l~~~a-~~~g~~~~v~~~  126 (330)
T 3e9m_A           83 AAKLALSQGKPV-LLEKPFTLNAAEAEELFAIA-QEQGVFLMEAQK  126 (330)
T ss_dssp             HHHHHHHTTCCE-EECSSCCSSHHHHHHHHHHH-HHTTCCEEECCS
T ss_pred             HHHHHHHCCCeE-EEeCCCCCCHHHHHHHHHHH-HHcCCeEEEEEh
Confidence            999999999886 44333 56678888888887 677754 44544

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.93  E-value=6e-09  Score=98.57  Aligned_cols=115  Identities=11%  Similarity=0.049  Sum_probs=91.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc----eecCcccccCHHHhhh---------cCCCCEEEEecC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKA---------ETKANASAIYVP  108 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~---------~~~iDlaii~vp  108 (331)
                      .++|+|||+.|.+|+.+++.+.+.+.++++.+++.....    ...+.++|.+++++.+         +.++|+++|+||
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP   82 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP   82 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence            578999999789999999999888889998888775321    1246789999999872         458999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +..+.+.+.+|+++|.+. ++=-+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        83 ~~~H~~~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  132 (318)
T 3oa2_A           83 NYLHYPHIAAGLRLGCDV-ICEKPLVPTPEMLDQLAVIE-RETDKRLYNILQ  132 (318)
T ss_dssp             GGGHHHHHHHHHHTTCEE-EECSSCCSCHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             cHHHHHHHHHHHHCCCeE-EEECCCcCCHHHHHHHHHHH-HHhCCEEEEEEh
Confidence            999999999999999875 44222 45667888888887 677765 45544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.93  E-value=2.4e-09  Score=102.83  Aligned_cols=115  Identities=19%  Similarity=0.302  Sum_probs=92.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +.++|+|||+ |++|+.+++.+.+. ++++++.+|++....   ...|+++|.+++++.++.++|++++++|+..+.+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (359)
T 3e18_A            4 KKYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA   82 (359)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             CcCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            5689999999 99999999988876 788988888765211   136889999999999877899999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .+|.|
T Consensus        83 ~~al~aGkhV-l~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~  124 (359)
T 3e18_A           83 ISALEAGKHV-VCEKPVTMTSEDLLAIMDVA-KRVNKHFMVHQN  124 (359)
T ss_dssp             HHHHHTTCEE-EEESSCCSSHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHCCCCE-EeeCCCcCCHHHHHHHHHHH-HHhCCeEEEEee
Confidence            9999999776 44333 56677888888887 666654 45544

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.93  E-value=8.5e-10  Score=99.05  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             cCCCCCCCCCC--CCccccc-CCCCeEEEEEcCCCCCCcHHHHH--HHHcCCeEEEEe--CCCCCCceecCcccc--cCH
Q 020101           21 CGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVGGV--TPKKGGTEHLGLPVF--NTV   91 (331)
Q Consensus        21 ~~~~~~~~~~~--~~l~~ll-~~k~~~VaIvGasgk~G~~~~~~--l~~~g~~iv~~V--nP~~~g~~i~G~p~y--~sl   91 (331)
                      .++.-+|+..+  ..+..+| .++.++|+|+|+ |++|+.+++.  ... |+++++.+  ||...|..+.|+|++  .++
T Consensus        56 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl  133 (211)
T 2dt5_A           56 GTRGVGYTVPVLKRELRHILGLNRKWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLL  133 (211)
T ss_dssp             CCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGH
T ss_pred             cCCceeEEhHHHHHHHHHHhCcCCCCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhH
Confidence            45555675421  1134444 466789999999 9999998885  223 88888875  566666778898875  467


Q ss_pred             HHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +++.++ ++|.+++++|...++++++.|.++|++.+|++++
T Consensus       134 ~ell~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P  173 (211)
T 2dt5_A          134 PQRVPG-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAP  173 (211)
T ss_dssp             HHHSTT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             HHHHHc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence            777776 8999999999999999999999999999999887

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=98.92  E-value=3.5e-09  Score=95.72  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=81.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      ..++..|+|++||||+.+.+...+.++++++.+++..  .           +++ .  ++|++|+|+.|+.+.+.++.|+
T Consensus        11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~--~-----------~~l-~--~~DVvIDFT~P~a~~~~~~~~~   74 (228)
T 1vm6_A           11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--V-----------EEL-D--SPDVVIDFSSPEALPKTVDLCK   74 (228)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--E-----------EEC-S--CCSEEEECSCGGGHHHHHHHHH
T ss_pred             ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCC--c-----------ccc-c--CCCEEEECCCHHHHHHHHHHHH
Confidence            4677889999999999998876667999998888653  1           222 2  5899999999999999999999


Q ss_pred             HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC-CCc
Q 020101          121 EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGV  162 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc-~Gi  162 (331)
                      ++|++. |+.|+||++++.+++.+++ ++ ---++.||. +|+
T Consensus        75 ~~g~~~-ViGTTG~~~~~~~~l~~~a-~~-~~vv~apNfSlGv  114 (228)
T 1vm6_A           75 KYRAGL-VLGTTALKEEHLQMLRELS-KE-VPVVQAYNFSIGI  114 (228)
T ss_dssp             HHTCEE-EECCCSCCHHHHHHHHHHT-TT-SEEEECSCCCHHH
T ss_pred             HcCCCE-EEeCCCCCHHHHHHHHHHH-hh-CCEEEeccccHHH
Confidence            999997 6699999998887777765 44 223778885 444

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.92  E-value=2.7e-09  Score=102.36  Aligned_cols=115  Identities=12%  Similarity=0.015  Sum_probs=91.4

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +.++|+|||+ |++|+. +.+.+.+. ++++++.+++....  +...+.++|.+++++.++.++|+++|+||+..+.+.+
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   82 (362)
T 3fhl_A            4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYA   82 (362)
T ss_dssp             CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            5689999999 999986 78888776 78999888876521  2234788999999999876799999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .+|.|
T Consensus        83 ~~al~aGkhV-l~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~  124 (362)
T 3fhl_A           83 GMALEAGKNV-VVEKPFTSTTKQGEELIALA-KKKGLMLSVYQN  124 (362)
T ss_dssp             HHHHHTTCEE-EEESSCCSSHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHCCCeE-EEecCCCCCHHHHHHHHHHH-HHcCCEEEEEec
Confidence            9999999876 44333 56778888888888 667755 45554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.91  E-value=2.6e-09  Score=102.16  Aligned_cols=115  Identities=12%  Similarity=0.001  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           40 DKNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      .+.++|+|||+ |++|+ .+++.+.+. ++++++.+|+.... +   +..|++.|.+++++.++.++|+++|++|+..+.
T Consensus        25 m~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~  103 (350)
T 3rc1_A           25 ANPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA  103 (350)
T ss_dssp             -CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH
T ss_pred             CCceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            45689999999 99998 688888886 78898888876421 1   235899999999999766799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEcc
Q 020101          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGP  157 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGP  157 (331)
                      +.+.+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .+|.
T Consensus       104 ~~~~~al~aGk~V-l~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~  147 (350)
T 3rc1_A          104 EWIDRALRAGKHV-LAEKPLTTDRPQAERLFAVA-RERGLLLMENF  147 (350)
T ss_dssp             HHHHHHHHTTCEE-EEESSSCSSHHHHHHHHHHH-HHTTCCEEEEC
T ss_pred             HHHHHHHHCCCcE-EEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEe
Confidence            9999999999885 44333 56778888888888 677765 4443

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.91  E-value=2.3e-09  Score=103.92  Aligned_cols=115  Identities=20%  Similarity=0.349  Sum_probs=91.5

Q ss_pred             CCeEEEEEcCCC-CCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITG-KNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasg-k~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ | .+|+.+++.+.+. ++++++.+|+.... +   +..|++.|.+++++.++.++|+++++||+..+.+
T Consensus         1 ~~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~   79 (387)
T 3moi_A            1 MKIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCE   79 (387)
T ss_dssp             CCEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHH
T ss_pred             CceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHH
Confidence            3589999999 7 8999999988875 78999888887521 1   1358999999999998767999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+|+++|++. ++=.+ ..+.++.++|.+++ +++|+. .+|.+
T Consensus        80 ~~~~al~aGk~V-l~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  123 (387)
T 3moi_A           80 HVVQASEQGLHI-IVEKPLTLSRDEADRMIEAV-ERAGVHLVVGTS  123 (387)
T ss_dssp             HHHHHHHTTCEE-EECSCCCSCHHHHHHHHHHH-HHHTCCEEECCC
T ss_pred             HHHHHHHCCCce-eeeCCccCCHHHHHHHHHHH-HHhCCeEEEEec
Confidence            999999999775 44333 45677888888887 677754 45554

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.91  E-value=2.6e-09  Score=102.00  Aligned_cols=116  Identities=14%  Similarity=0.105  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           40 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .+.++|+|||+ |++|+. +.+.+.+. ++++++.+++....  ....+.++|.+++++.++.++|++++++|+..+.+.
T Consensus         5 ~~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   83 (352)
T 3kux_A            5 ADKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPL   83 (352)
T ss_dssp             TCCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHH
T ss_pred             cCCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            45689999999 999986 78888775 78999888876421  124578899999999987679999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+|+++|++. ++=.+ ..+.++.++|.+++ +++|+. .+|.|
T Consensus        84 ~~~al~aGkhV-~~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  126 (352)
T 3kux_A           84 AQSALAAGKHV-VVDKPFTVTLSQANALKEHA-DDAGLLLSVFHN  126 (352)
T ss_dssp             HHHHHHTTCEE-EECSSCCSCHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             HHHHHHCCCcE-EEECCCcCCHHHHHHHHHHH-HHcCCeEEEEee
Confidence            99999999775 54334 56678888888888 677765 44544

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.91  E-value=5.4e-09  Score=97.76  Aligned_cols=114  Identities=10%  Similarity=0.037  Sum_probs=89.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH----cCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE----YGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~----~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .+.++|+|||+ |.+|+.+++.+.+    .++++++..+++.. .+..|++ |.+++++.++.++|+++++||+..+.+.
T Consensus         5 ~~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~   81 (294)
T 1lc0_A            5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDY   81 (294)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred             CCcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHH-HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHH
Confidence            45689999999 9999998887764    36788888887543 3456777 6899999876689999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+|+++|.+. ++=-+ ..+.++.++|.+.+ +++|+. .+|++
T Consensus        82 ~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~~~~~~~  124 (294)
T 1lc0_A           82 IRQFLQAGKHV-LVEYPMTLSFAAAQELWELA-AQKGRVLHEEHV  124 (294)
T ss_dssp             HHHHHHTTCEE-EEESCSCSCHHHHHHHHHHH-HHTTCCEEEECG
T ss_pred             HHHHHHCCCcE-EEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEEh
Confidence            99999999876 44222 44567888888888 677765 55554

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.90  E-value=2.3e-09  Score=102.34  Aligned_cols=113  Identities=11%  Similarity=0.041  Sum_probs=89.9

Q ss_pred             CeEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCCcee------cCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           42 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGTEH------LGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        42 ~~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g~~i------~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      .++|+|||+ |.+|+ .+.+.+.+. ++++++.+++.. .+..      .+.++|.+++++.++.++|++++++|+..+.
T Consensus         2 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~-~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   79 (349)
T 3i23_A            2 TVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLHV-NEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY   79 (349)
T ss_dssp             CEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTTC-CHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred             eeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCCH-HHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence            378999999 99997 677777765 789998999873 2333      5789999999999876799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+.+|+++|++. ++=-+ ..+.++.++|.+++ +++|+. .++.|
T Consensus        80 ~~~~~al~aGk~V-l~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  124 (349)
T 3i23_A           80 DLAKQAILAGKSV-IVEKPFCDTLEHAEELFALG-QEKGVVVMPYQN  124 (349)
T ss_dssp             HHHHHHHHTTCEE-EECSCSCSSHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             HHHHHHHHcCCEE-EEECCCcCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            9999999999775 44333 45677888888888 677765 44544

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.90  E-value=3.4e-09  Score=103.27  Aligned_cols=119  Identities=12%  Similarity=0.127  Sum_probs=90.4

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHc---------CCeEEEEeCCCCCC-c---eecCc-ccccCHHHhhhcCCCCEEE
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASA  104 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~---------g~~iv~~VnP~~~g-~---~i~G~-p~y~sl~dl~~~~~iDlai  104 (331)
                      +.+.+||+|||+ |.+|+.+++.+++.         +.++++.+|+.... +   +.+|. ++|.+++++.+++++|+++
T Consensus        23 Ms~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~  101 (412)
T 4gqa_A           23 MSARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVD  101 (412)
T ss_dssp             --CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEE
T ss_pred             ccccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEE
Confidence            456699999999 99999998887653         35799888887521 1   13466 5999999999877899999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC  159 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc  159 (331)
                      |+||+..+.+.+.+|+++|.+.++=-.-..+.++.++|.+++ +++|+. .+|.|.
T Consensus       102 I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~~  156 (412)
T 4gqa_A          102 ITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAA-RRAGVKTMVAFNN  156 (412)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH-HHHTCCEEEECGG
T ss_pred             ECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHH-HHhCCeeeeccce
Confidence            999999999999999999987633222245677888888887 666644 566553

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.89  E-value=4.5e-09  Score=95.01  Aligned_cols=113  Identities=15%  Similarity=0.190  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      ++|+|||+ |+||+.+.+++.+.|+++++..|+..  +. .  ..|.+++++.+ .++|++++++|++.+.+.+..++++
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~--~~-~--~~~~~~~~l~~-~~~DvVv~~~~~~~~~~~~~~~l~~   73 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRG--EH-E--KMVRGIDEFLQ-REMDVAVEAASQQAVKDYAEKILKA   73 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC--CC-T--TEESSHHHHTT-SCCSEEEECSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCc--ch-h--hhcCCHHHHhc-CCCCEEEECCCHHHHHHHHHHHHHC
Confidence            37899999 99999999998888999887888764  11 1  17899999884 3799999999999999999999999


Q ss_pred             CCcEEEEecCCCCh-hHH-HHHHHHHhccCCcE-EEccCCCCccc
Q 020101          123 ELDLVVCITEGIPQ-HDM-VRVKAALNNQSKTR-LVGPNCPGVIK  164 (331)
Q Consensus       123 Gi~~ivi~t~G~~e-~~~-~~l~~~a~~~~gi~-viGPnc~Gi~~  164 (331)
                      |.+. ++.+++... .+. ++|.+.+ +++|.. ++.+|+.|-+.
T Consensus        74 G~~v-v~~~~~~~~~~~~~~~l~~~a-~~~g~~~~i~~~~~g~~~  116 (236)
T 2dc1_A           74 GIDL-IVLSTGAFADRDFLSRVREVC-RKTGRRVYIASGAIGGLD  116 (236)
T ss_dssp             TCEE-EESCGGGGGSHHHHHHHHHHH-HHHCCCEEECCTTCSCHH
T ss_pred             CCcE-EEECcccCChHHHHHHHHHHH-HhcCCeEEecCccccChH
Confidence            9875 667776543 344 6777777 677766 67788776543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.89  E-value=1.9e-09  Score=97.03  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=76.4

Q ss_pred             cCCCCCCCCCC--CCccccc-CCCCeEEEEEcCCCCCCcHHHHH--HHHcCCeEEEEe--CCCCCCceecCccccc--CH
Q 020101           21 CGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQ--AIEYGTKMVGGV--TPKKGGTEHLGLPVFN--TV   91 (331)
Q Consensus        21 ~~~~~~~~~~~--~~l~~ll-~~k~~~VaIvGasgk~G~~~~~~--l~~~g~~iv~~V--nP~~~g~~i~G~p~y~--sl   91 (331)
                      .++.-+|+..+  ..+..+| .++.++|+|+|| |++|+.+++.  ....|+++++.+  ||...|..+.|+|++.  ++
T Consensus        61 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl  139 (215)
T 2vt3_A           61 GKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDL  139 (215)
T ss_dssp             C-----EEHHHHHHHHHHHHHHC---CEEEECC-SHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGH
T ss_pred             cCCcceEEhHHHHHHHHHHhCcCCCCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhH
Confidence            45555665421  1134444 456788999999 9999999984  334589988775  5666667789999775  57


Q ss_pred             HHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 020101           92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus        92 ~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      +++.++ . |++++++|...++++++.|.+.|++.+|+|++=
T Consensus       140 ~eli~~-~-D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~  179 (215)
T 2vt3_A          140 EQHVKD-E-SVAILTVPAVAAQSITDRLVALGIKGILNFTPA  179 (215)
T ss_dssp             HHHCSS-C-CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             HHHHHh-C-CEEEEecCchhHHHHHHHHHHcCCCEEEEcCce
Confidence            777654 3 999999999999999999999999999999983

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.88  E-value=3.8e-09  Score=101.32  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=91.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHH-Hc-CCeEEEEeCCCCCCc----eecC--cccccCHHHhhhcCCCCEEEEecChhh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAI-EY-GTKMVGGVTPKKGGT----EHLG--LPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~-~~-g~~iv~~VnP~~~g~----~i~G--~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      .+.++|+|||+ |++|+.+++.+. +. ++++++.+|+.....    +..|  .+.|.+++++.++.++|++++++|+..
T Consensus        21 m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   99 (357)
T 3ec7_A           21 GMTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA   99 (357)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             CCeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            45689999999 999999999888 43 789998888876311    1245  689999999998667999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcEE--EccC
Q 020101          112 AAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTRL--VGPN  158 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~v--iGPn  158 (331)
                      +.+.+.+|+++|++. ++=.+ ..+.++.++|.+.+ +++|+.+  +|-+
T Consensus       100 h~~~~~~al~aGk~V-l~EKPla~~~~e~~~l~~~a-~~~g~~~~~v~~~  147 (357)
T 3ec7_A          100 HADVAVAALNANKYV-FCEKPLAVTAADCQRVIEAE-QKNGKRMVQIGFM  147 (357)
T ss_dssp             HHHHHHHHHHTTCEE-EEESSSCSSHHHHHHHHHHH-HHHTSCCEEEECG
T ss_pred             HHHHHHHHHHCCCCE-EeecCccCCHHHHHHHHHHH-HHhCCeEEEEeec
Confidence            999999999999775 44334 56677888888887 6777654  4443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.88  E-value=5.3e-09  Score=100.58  Aligned_cols=116  Identities=14%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             CCCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           40 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      ++.++|+|||+ |++|+. +.+.+.+. ++++++.+++....  ....+.++|.+++++.++.++|++++++|+..+.+.
T Consensus         5 ~~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~   83 (364)
T 3e82_A            5 NNTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL   83 (364)
T ss_dssp             --CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH
T ss_pred             CCcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence            35689999999 999985 77888775 78999888876521  124578899999999987789999999999999999


Q ss_pred             HHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          116 ILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+|+++|++. ++=.+ ..+.++.++|.+++ +++|+. .+|.|
T Consensus        84 ~~~al~aGk~V-l~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  126 (364)
T 3e82_A           84 ARLALNAGKHV-VVDKPFTLDMQEARELIALA-EEKQRLLSVFHN  126 (364)
T ss_dssp             HHHHHHTTCEE-EECSCSCSSHHHHHHHHHHH-HHTTCCEEECCC
T ss_pred             HHHHHHCCCcE-EEeCCCcCCHHHHHHHHHHH-HHhCCeEEEEee
Confidence            99999999775 44333 45677888888887 677765 44544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.87  E-value=5.7e-09  Score=98.67  Aligned_cols=113  Identities=18%  Similarity=0.241  Sum_probs=90.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      .++|+|||+ |++|+.+++.+.+. ++++++.+|+.... +   +..|++ |.+++++.+++++|++++++|+..+.+.+
T Consensus         3 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   80 (331)
T 4hkt_A            3 TVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI   80 (331)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence            478999999 99999999998885 78898888886521 1   235888 99999999876899999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++-.+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        81 ~~al~~gk~v-~~EKP~~~~~~~~~~l~~~a-~~~g~~~~v~~~  122 (331)
T 4hkt_A           81 ERFARAGKAI-FCEKPIDLDAERVRACLKVV-SDTKAKLMVGFN  122 (331)
T ss_dssp             HHHHHTTCEE-EECSCSCSSHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             HHHHHcCCcE-EEecCCCCCHHHHHHHHHHH-HHcCCeEEEccc
Confidence            9999999775 54333 56778888888887 677755 44443

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.87  E-value=8.4e-09  Score=98.78  Aligned_cols=116  Identities=8%  Similarity=0.075  Sum_probs=89.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecC----cccccCHHHhhhcCCCCEEEEecChh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLG----LPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G----~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ++.++|+|||+ |++|+.+++.+.+. ++++++.++++... +   +..|    .++|.+++++.++.++|++++++|+.
T Consensus         4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   82 (362)
T 1ydw_A            4 ETQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS   82 (362)
T ss_dssp             --CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             CCceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence            45689999999 99999999988875 68888888876521 1   1234    47899999998766799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          111 FAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+.+.+|+++|.+. ++-.+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        83 ~h~~~~~~al~aGk~V-~~EKP~a~~~~e~~~l~~~a-~~~g~~~~~~~~  130 (362)
T 1ydw_A           83 LHVEWAIKAAEKGKHI-LLEKPVAMNVTEFDKIVDAC-EANGVQIMDGTM  130 (362)
T ss_dssp             GHHHHHHHHHTTTCEE-EECSSCSSSHHHHHHHHHHH-HTTTCCEEECCC
T ss_pred             HHHHHHHHHHHCCCeE-EEecCCcCCHHHHHHHHHHH-HHcCCEEEEEEe
Confidence            9999999999999875 44333 45667888888888 777765 45544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.87  E-value=5.3e-09  Score=99.60  Aligned_cols=117  Identities=14%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             CCCCeEEEEEcCCC-CCCcHHHHHHHHc--CCeEEEEeCCCCCCc----eecCc-ccccCHHHhhhcCCCCEEEEecChh
Q 020101           39 VDKNTRVICQGITG-KNGTFHTEQAIEY--GTKMVGGVTPKKGGT----EHLGL-PVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        39 ~~k~~~VaIvGasg-k~G~~~~~~l~~~--g~~iv~~VnP~~~g~----~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      .++.++|+|||+ | .+|+.+++.+.+.  ++++++.+|+.....    +..|. ++|.+++++.++.++|+++|+||+.
T Consensus        15 ~~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   93 (340)
T 1zh8_A           15 PLRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   93 (340)
T ss_dssp             -CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             CCCceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            467899999999 7 7898889888875  578988888865211    12465 7899999999876899999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          111 FAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+.+.+|+++|.+. ++=.+ ..+.++.++|.+++ +++|+. .+|.+
T Consensus        94 ~H~~~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  141 (340)
T 1zh8_A           94 LNLPFIEKALRKGVHV-ICEKPISTDVETGKKVVELS-EKSEKTVYIAEN  141 (340)
T ss_dssp             GHHHHHHHHHHTTCEE-EEESSSSSSHHHHHHHHHHH-HHCSSCEEEECG
T ss_pred             HHHHHHHHHHHCCCcE-EEeCCCCCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            9999999999999875 44333 45667888888888 677754 44544

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.86  E-value=8e-09  Score=97.06  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=88.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-cee-cCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH-LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~~i-~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ++.++|+|||+ |++|+.+++.+.+. ++++++.+|+.... +.. ..++.|.+++++.++.++|++++++|+..+.+.+
T Consensus         8 ~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   86 (315)
T 3c1a_A            8 NSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEIT   86 (315)
T ss_dssp             -CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred             CCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence            45689999999 99999999999885 68888787775410 111 1167899999998655799999999999999999


Q ss_pred             HHHHHcCCcEEEEec-CCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCIT-EGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t-~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++-. ...+.++..+|.+.+ +++|+. .+|.+
T Consensus        87 ~~al~~Gk~v-~~eKP~~~~~~~~~~l~~~a-~~~g~~~~~~~~  128 (315)
T 3c1a_A           87 LAAIASGKAV-LVEKPLTLDLAEAEAVAAAA-KATGVMVWVEHT  128 (315)
T ss_dssp             HHHHHTTCEE-EEESSSCSCHHHHHHHHHHH-HHHCCCEEEECG
T ss_pred             HHHHHCCCcE-EEcCCCcCCHHHHHHHHHHH-HHcCCEEEEeec
Confidence            9999999775 4432 345677788888887 666755 55554

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.86  E-value=1.5e-08  Score=95.96  Aligned_cols=113  Identities=16%  Similarity=0.170  Sum_probs=85.9

Q ss_pred             CCeEEEEEcCCCCCCc-HHHHHHHHcCCeEEEEeCCCCCCc-----eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~-~~~~~l~~~g~~iv~~VnP~~~g~-----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ |++|. .+++.+...++++++.+|+.....     ...+.++|.+++++.++.++|+++++||+..+.+
T Consensus         3 ~~~rvgiiG~-G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   81 (336)
T 2p2s_A            3 KKIRFAAIGL-AHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE   81 (336)
T ss_dssp             -CCEEEEECC-SSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred             CccEEEEECC-ChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH
Confidence            4578999999 88875 456667666899988888765311     1226789999999998668999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEc
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      .+.+|+++|.+. ++=.+ ..+.++.++|.+.+ +++|+. .+|
T Consensus        82 ~~~~al~aGkhV-l~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~  123 (336)
T 2p2s_A           82 LALRTLDAGKDF-FTAKPPLTTLEQLDAVQRRV-AETGRKFAVY  123 (336)
T ss_dssp             HHHHHHHTTCEE-EECSSCCSCHHHHHHHHHHH-HHHCCCEEEC
T ss_pred             HHHHHHHCCCcE-EEeCCCCCCHHHHHHHHHHH-HHcCCEEEEe
Confidence            999999999875 44222 34567788888887 677755 344

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.86  E-value=1.8e-08  Score=96.81  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=88.0

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHcCCeEEEEeCCCCCC-c---eecC-cccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG-T---EHLG-LPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~g~~iv~~VnP~~~g-~---~i~G-~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ |.++.. +.+.+...++++++.+|+.... +   +..| .++|.+++++.++.++|+++|+||+..+.+
T Consensus        25 ~~irvgiiG~-G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~  103 (361)
T 3u3x_A           25 DELRFAAVGL-NHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE  103 (361)
T ss_dssp             -CCEEEEECC-CSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred             cCcEEEEECc-CHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            5689999999 888854 5566666789999888887521 1   1234 679999999998767999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .+|.|
T Consensus       104 ~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~l~v~~~  147 (361)
T 3u3x_A          104 LAIRAMQHGKDV-LVDKPGMTSFDQLAKLRRVQ-AETGRIFSILYS  147 (361)
T ss_dssp             HHHHHHHTTCEE-EEESCSCSSHHHHHHHHHHH-HTTCCCEEEECH
T ss_pred             HHHHHHHCCCeE-EEeCCCCCCHHHHHHHHHHH-HHcCCEEEEech
Confidence            999999999876 44233 55677888898888 677765 44533

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.84  E-value=1.5e-08  Score=99.94  Aligned_cols=116  Identities=12%  Similarity=0.121  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcC---CCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcc---cccCHHHhhhcCCCCEEEEec
Q 020101           40 DKNTRVICQGI---TGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLP---VFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        40 ~k~~~VaIvGa---sgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p---~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+.++|+|||+   .|.+|+.+++.+.+.  ++++++.+|+.... +   +..|++   +|.+++++.++.++|+++|+|
T Consensus        18 m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~t   97 (438)
T 3btv_A           18 AAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAI   97 (438)
T ss_dssp             -CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECS
T ss_pred             cCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeC
Confidence            36799999999   489999999998886  68899888886521 1   134666   899999999866799999999


Q ss_pred             ChhhHHHHHHHHHHcCC-----cEEEEecC-CCChhHHHHHHHHHhccCCcE-EEc
Q 020101          108 PPPFAAAAILEAMEAEL-----DLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi-----~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      |+..+.+.+.+|+++|.     +.+++=.+ ..+.++.++|.+++ +++|+. .+|
T Consensus        98 p~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~  152 (438)
T 3btv_A           98 QVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAA-AERGVQTIIS  152 (438)
T ss_dssp             CHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHH-HTTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHH-HHcCCeEEEe
Confidence            99999999999999992     44455332 45667888888888 777865 444

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.82  E-value=5.5e-09  Score=99.38  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=90.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHH-H-cCCeEEEEeCCCCCC-c---eecC--cccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAI-E-YGTKMVGGVTPKKGG-T---EHLG--LPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~-~-~g~~iv~~VnP~~~g-~---~i~G--~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      .++|+|||+ |++|+.+++.+. + .++++++.+|++... +   +..|  .+.|.+++++.++.++|++++++|+..+.
T Consensus         2 ~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            2 SLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             eEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHH
Confidence            378999999 999999999988 5 378899888886521 1   1246  67899999999866799999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcEE--EccC
Q 020101          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTRL--VGPN  158 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~v--iGPn  158 (331)
                      +.+.+|+++|.+. ++=.+ ..+.++.++|.+.+ +++|+.+  +|-+
T Consensus        81 ~~~~~al~~Gk~v-l~EKP~a~~~~e~~~l~~~a-~~~g~~~~~v~~~  126 (344)
T 3mz0_A           81 SSVLKAIKAQKYV-FCEKPLATTAEGCMRIVEEE-IKVGKRLVQVGFM  126 (344)
T ss_dssp             HHHHHHHHTTCEE-EECSCSCSSHHHHHHHHHHH-HHHSSCCEEECCG
T ss_pred             HHHHHHHHCCCcE-EEcCCCCCCHHHHHHHHHHH-HHHCCEEEEEecc
Confidence            9999999999765 44333 56677888888887 6777654  4443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.82  E-value=1.8e-08  Score=95.57  Aligned_cols=116  Identities=20%  Similarity=0.358  Sum_probs=88.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHH-Hc-CCeEEEEeCCCCCCc----eecCc-ccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAI-EY-GTKMVGGVTPKKGGT----EHLGL-PVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~-~~-g~~iv~~VnP~~~g~----~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ++.++|+|||+ |++|+.+++.+. +. ++++++.++++....    +..|. ++|.+++++.++.++|++++++|+..+
T Consensus         6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A            6 RKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             CCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH
T ss_pred             CCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH
Confidence            45689999999 999999999988 54 788887888765211    12466 689999999875579999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEec-CCCChhHHHHHHHHHhccC-CcEE-EccC
Q 020101          113 AAAILEAMEAELDLVVCIT-EGIPQHDMVRVKAALNNQS-KTRL-VGPN  158 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t-~G~~e~~~~~l~~~a~~~~-gi~v-iGPn  158 (331)
                      .+.+.+|+++|.+. ++-. ...+.++.++|.+.+ +++ |+.+ ++.+
T Consensus        85 ~~~~~~al~~G~~v-~~eKp~~~~~~~~~~l~~~a-~~~~~~~~~~~~~  131 (346)
T 3cea_A           85 PEMTIYAMNAGLNV-FCEKPLGLDFNEVDEMAKVI-KSHPNQIFQSGFM  131 (346)
T ss_dssp             HHHHHHHHHTTCEE-EECSCCCSCHHHHHHHHHHH-HTCTTSCEECCCG
T ss_pred             HHHHHHHHHCCCEE-EEcCCCCCCHHHHHHHHHHH-HhCCCCeEEEecc
Confidence            99999999999765 4422 245567777888887 677 7664 3443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.80  E-value=7.4e-09  Score=99.26  Aligned_cols=115  Identities=13%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +.++|+|||+ |++|+. +.+.+.+. ++++++.+++....  +...+.++|.+++++.++.++|++++++|+..+.+.+
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   82 (358)
T 3gdo_A            4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT   82 (358)
T ss_dssp             TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            5689999999 999985 77877765 78999888876521  1234789999999999877899999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .+|.|
T Consensus        83 ~~al~aGkhV-l~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  124 (358)
T 3gdo_A           83 MACIQAGKHV-VMEKPMTATAEEGETLKRAA-DEKGVLLSVYHN  124 (358)
T ss_dssp             HHHHHTTCEE-EEESSCCSSHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHHcCCeE-EEecCCcCCHHHHHHHHHHH-HHcCCeEEEeee
Confidence            9999999775 44333 56677888888888 666654 45544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.80  E-value=8.9e-09  Score=97.94  Aligned_cols=113  Identities=16%  Similarity=0.257  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ++|+|||+ |++|+.+++.+.+. ++++++.+|+.... +   +..|++ +|.+++++.++.++|++++++|+..+.+.+
T Consensus         3 ~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   81 (344)
T 3ezy_A            3 LRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV   81 (344)
T ss_dssp             EEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH
Confidence            68999999 99999999988875 78898888886521 1   135665 899999999876899999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++=.+ ..+.++.++|.+++ +++|+. .+|.+
T Consensus        82 ~~al~~gk~v-~~EKP~~~~~~e~~~l~~~a-~~~g~~~~v~~~  123 (344)
T 3ezy_A           82 IACAKAKKHV-FCEKPLSLNLADVDRMIEET-KKADVILFTGFN  123 (344)
T ss_dssp             HHHHHTTCEE-EEESCSCSCHHHHHHHHHHH-HHHTCCEEEECG
T ss_pred             HHHHhcCCeE-EEECCCCCCHHHHHHHHHHH-HHhCCcEEEeec
Confidence            9999999775 44444 67778888888887 666754 44544

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.80  E-value=6.4e-09  Score=100.83  Aligned_cols=112  Identities=12%  Similarity=0.218  Sum_probs=87.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhH-
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFA-  112 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-  112 (331)
                      .+.+||+|||+ | +|+.+++.+.+.  ++++++.++++... +   +-+|+|+|.+++++++  ++|+++|+||+..+ 
T Consensus         5 ~~~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~--~~D~v~i~~p~~~h~   80 (372)
T 4gmf_A            5 SPKQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITG--MPDIACIVVRSTVAG   80 (372)
T ss_dssp             --CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCS--CCSEEEECCC--CTT
T ss_pred             CCCCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhc--CCCEEEEECCCcccc
Confidence            35689999998 7 899988888764  68999889987621 1   2479999999999997  79999999999887 


Q ss_pred             ---HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          113 ---AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       113 ---~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                         .+++++|+++|++. ++=-+ ++.++.++|.+.| +++|+. .+|-+
T Consensus        81 ~~~~~~a~~al~aGkhV-l~EKP-l~~~ea~~l~~~A-~~~g~~~~v~~~  127 (372)
T 4gmf_A           81 GAGTQLARHFLARGVHV-IQEHP-LHPDDISSLQTLA-QEQGCCYWINTF  127 (372)
T ss_dssp             SHHHHHHHHHHHTTCEE-EEESC-CCHHHHHHHHHHH-HHHTCCEEEECS
T ss_pred             hhHHHHHHHHHHcCCcE-EEecC-CCHHHHHHHHHHH-HHcCCEEEEcCc
Confidence               89999999999987 43333 6778888898888 778865 55544

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.79  E-value=1.3e-08  Score=95.90  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCCCcHH-HHHHHHcCCeEEEEeCCCCCCc----eecCcc-cccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFH-TEQAIEYGTKMVGGVTPKKGGT----EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~-~~~l~~~g~~iv~~VnP~~~g~----~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      ++|+|||+ |++|+.+ .+.+.+.++++++.+|++....    +..|.+ +|.+++++.++.++|++++++|+..+.+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   79 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQT   79 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHH
Confidence            47899999 9999987 7777777788888888765211    124775 899999998755799999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+|+++|.+. ++-.+ ..+.++.++|.+.+ +++|+. .+|++
T Consensus        80 ~~al~~Gk~v-~~ekP~~~~~~~~~~l~~~a-~~~g~~~~~~~~  121 (332)
T 2glx_A           80 LAAIRAGKHV-LCEKPLAMTLEDAREMVVAA-REAGVVLGTNHH  121 (332)
T ss_dssp             HHHHHTTCEE-EECSSSCSSHHHHHHHHHHH-HHHTCCEEECCC
T ss_pred             HHHHHCCCeE-EEeCCCcCCHHHHHHHHHHH-HHcCCEEEEeeh
Confidence            9999999765 44332 45667778888887 666755 45554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.79  E-value=8.2e-09  Score=96.60  Aligned_cols=111  Identities=13%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ |++|+. +++.+.+. ++++++.+|+.... +   +..|++.|.+++++.+  ++|++++++|+..+.+
T Consensus         5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~--~~D~V~i~tp~~~h~~   81 (308)
T 3uuw_A            5 KNIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAK--KCDCIFLHSSTETHYE   81 (308)
T ss_dssp             CCCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHT--TCSEEEECCCGGGHHH
T ss_pred             ccCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHh--cCCEEEEeCCcHhHHH
Confidence            4588999999 999986 78888774 78999888887521 1   1358888999999998  8999999999999999


Q ss_pred             HHHHHHHcCCcEEEEe-cCCCChhHHHHHHHHHhccCCcE-EEc
Q 020101          115 AILEAMEAELDLVVCI-TEGIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~-t~G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      .+.+|+++|.+. ++= ....+.++.++|.+.+ +++|+. .+|
T Consensus        82 ~~~~al~~gk~v-l~EKP~~~~~~~~~~l~~~a-~~~g~~~~v~  123 (308)
T 3uuw_A           82 IIKILLNLGVHV-YVDKPLASTVSQGEELIELS-TKKNLNLMVG  123 (308)
T ss_dssp             HHHHHHHTTCEE-EECSSSSSSHHHHHHHHHHH-HHHTCCEEEC
T ss_pred             HHHHHHHCCCcE-EEcCCCCCCHHHHHHHHHHH-HHcCCEEEEe
Confidence            999999999885 432 2245667888888887 677754 444

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.79  E-value=6.5e-09  Score=98.99  Aligned_cols=114  Identities=10%  Similarity=-0.051  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCCCCCcH-HHH-HHHH-cCCeEEEEeCCCCCC----ceecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTF-HTE-QAIE-YGTKMVGGVTPKKGG----TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~-~~~-~l~~-~g~~iv~~VnP~~~g----~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      .++|+|||+ |++|+. +.+ .+.. .++++++.+|+....    .+..+.++|.+++++.++.++|++++++|+..+.+
T Consensus         2 ~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (345)
T 3f4l_A            2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   80 (345)
T ss_dssp             CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred             ceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            478999999 999974 777 4344 378999888876531    12357889999999998667999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+|+++|.+. ++-.+ ..+.++.++|.+.+ +++|+. .++.|
T Consensus        81 ~~~~al~aGk~V-l~EKP~a~~~~e~~~l~~~a-~~~g~~~~v~~~  124 (345)
T 3f4l_A           81 YAKRALEAGKNV-LVEKPFTPTLAQAKELFALA-KSKGLTVTPYQN  124 (345)
T ss_dssp             HHHHHHHTTCEE-EECSSSCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             HHHHHHHcCCcE-EEeCCCCCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            999999999775 44232 45667888888887 667755 44544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.79  E-value=2.6e-08  Score=93.60  Aligned_cols=110  Identities=14%  Similarity=0.132  Sum_probs=84.9

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|||+ |++|+. +++.+.+. ++++++.+|+.....    +..|+++|.+.+++.  .++|++++++|+..+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~--~~~D~V~i~tp~~~h~~   80 (319)
T 1tlt_A            4 KKLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLA--ASCDAVFVHSSTASHFD   80 (319)
T ss_dssp             -CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHH--TTCSEEEECSCTTHHHH
T ss_pred             CcceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhh--cCCCEEEEeCCchhHHH
Confidence            4589999999 999986 88888764 788888888765321    134788899999883  37999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEE
Q 020101          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~v  154 (331)
                      .+.+|+++|++.++--....+.++.++|.+.+ +++|+.+
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a-~~~g~~~  119 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELA-ARKKLTL  119 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH-HHTTCCE
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHH-HHcCCeE
Confidence            99999999987643222356677888888887 6777653

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.78  E-value=1.2e-08  Score=97.88  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC-----ceecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-----TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g-----~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +.++|+|||+ |++|+. +++.+.+. ++++++.+|+....     +...+.++|.+++++.++.++|+++|++|+..+.
T Consensus         4 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   82 (359)
T 3m2t_A            4 SLIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF   82 (359)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred             CcceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence            4689999999 999885 77888775 78898888876421     1123678999999999876899999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+.+|+++|++. ++=-+ ..+.++.++|.+.+ +++|+. .+|.|
T Consensus        83 ~~~~~al~aGkhV-l~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  127 (359)
T 3m2t_A           83 EMGLLAMSKGVNV-FVEKPPCATLEELETLIDAA-RRSDVVSGVGMN  127 (359)
T ss_dssp             HHHHHHHHTTCEE-EECSCSCSSHHHHHHHHHHH-HHHTCCEEECCH
T ss_pred             HHHHHHHHCCCeE-EEECCCcCCHHHHHHHHHHH-HHcCCEEEEEec
Confidence            9999999999885 44222 45667888888887 666654 44543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.77  E-value=1.5e-08  Score=95.87  Aligned_cols=114  Identities=11%  Similarity=0.119  Sum_probs=88.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCC-c---eecCcc-cccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      .+||+|||+ |++|+.+++.+.+.   ++++++..+++... +   +..|++ +|.+++++.++.++|+++++||+..+.
T Consensus         2 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   80 (334)
T 3ohs_X            2 ALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHK   80 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             ccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            378999998 99999998888765   35788888886521 1   135774 899999999877899999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +.+.+|+++|.+. ++=-+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus        81 ~~~~~al~~GkhV-l~EKP~a~~~~e~~~l~~~a-~~~~~~~~v~~~  125 (334)
T 3ohs_X           81 AAVMLCLAAGKAV-LCEKPMGVNAAEVREMVTEA-RSRGLFLMEAIW  125 (334)
T ss_dssp             HHHHHHHHTTCEE-EEESSSSSSHHHHHHHHHHH-HHTTCCEEEECG
T ss_pred             HHHHHHHhcCCEE-EEECCCCCCHHHHHHHHHHH-HHhCCEEEEEEh
Confidence            9999999999775 44333 45667888888888 677754 44443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.75  E-value=1.1e-08  Score=97.74  Aligned_cols=116  Identities=14%  Similarity=0.051  Sum_probs=85.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc--------CCeEEEEeCCCCCC-c---eecCc-ccccCHHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY--------GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~--------g~~iv~~VnP~~~g-~---~i~G~-p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      +.+||+|||+ |.+|+.+++.+.+.        +.++++.+|++... +   +..|+ ++|.+++++.+++++|+++|+|
T Consensus         5 ~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~t   83 (390)
T 4h3v_A            5 TNLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCT   83 (390)
T ss_dssp             CEEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECS
T ss_pred             CcCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence            4589999999 99999888877653        23788888887521 1   13465 4899999999877899999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHH---HhccCCcE-EEccC
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAA---LNNQSKTR-LVGPN  158 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~---a~~~~gi~-viGPn  158 (331)
                      |+..+.+.+.+|+++|.+.++=-.-..+.++.++|.+.   + ++.|+. .+|.+
T Consensus        84 P~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~-~~~g~~~~v~~~  137 (390)
T 4h3v_A           84 PGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKA-AAGGIRSMVGFT  137 (390)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH-HHTTCCEEEECG
T ss_pred             ChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHH-HhcCCceEEEee
Confidence            99999999999999998763322224556677777444   4 456644 55654

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.74  E-value=3.4e-08  Score=95.96  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=88.2

Q ss_pred             CCeEEEEEcCCCC---CCcHHHHHHHHc-CCeEEE-EeCCCCCC-c---eecCc---ccccCHHHhhhc-----CCCCEE
Q 020101           41 KNTRVICQGITGK---NGTFHTEQAIEY-GTKMVG-GVTPKKGG-T---EHLGL---PVFNTVAEAKAE-----TKANAS  103 (331)
Q Consensus        41 k~~~VaIvGasgk---~G~~~~~~l~~~-g~~iv~-~VnP~~~g-~---~i~G~---p~y~sl~dl~~~-----~~iDla  103 (331)
                      +.++|+|||+ |+   +|+.+...+... ++++++ .+++.... +   +..|+   ++|.+++++.++     .++|++
T Consensus        11 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V   89 (398)
T 3dty_A           11 QPIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAV   89 (398)
T ss_dssp             SCEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred             CcceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEE
Confidence            5689999999 88   999999888765 588887 55776421 1   13577   699999999874     359999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          104 AIYVPPPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +|+||+..+.+.+.+|+++|.+. ++=-+ ..+.++.++|.+++ +++|+. .+|-|
T Consensus        90 ~i~tp~~~H~~~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~  144 (398)
T 3dty_A           90 SIATPNGTHYSITKAALEAGLHV-VCEKPLCFTVEQAENLRELS-HKHNRIVGVTYG  144 (398)
T ss_dssp             EEESCGGGHHHHHHHHHHTTCEE-EECSCSCSCHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             EECCCcHHHHHHHHHHHHCCCeE-EEeCCCcCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            99999999999999999999875 43122 45667888888888 677755 45544

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.74  E-value=1.2e-08  Score=100.43  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=89.6

Q ss_pred             CCCCeEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCC-c---eecCcc-----cccCHHHhhhcCCCCEEEEec
Q 020101           39 VDKNTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGLP-----VFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~p-----~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ..+.++|+|||+ |++|+ .+++.+.+. ++++++.+|+.... +   +..|++     +|.+++++.++.++|++++++
T Consensus        80 ~~~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat  158 (433)
T 1h6d_A           80 EDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL  158 (433)
T ss_dssp             CCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred             CCCceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence            346789999999 99997 788888775 67888888876521 1   124654     799999998766799999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      |+..+.+.+.+|+++|.+. ++=.+ ..+.++.++|.+.+ +++|+. .+|.+
T Consensus       159 p~~~h~~~~~~al~aGk~V-l~EKPla~~~~e~~~l~~~a-~~~g~~~~v~~~  209 (433)
T 1h6d_A          159 PNSLHAEFAIRAFKAGKHV-MCEKPMATSVADCQRMIDAA-KAANKKLMIGYR  209 (433)
T ss_dssp             CGGGHHHHHHHHHHTTCEE-EECSSCCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             CchhHHHHHHHHHHCCCcE-EEcCCCCCCHHHHHHHHHHH-HHhCCeEEEEec
Confidence            9999999999999999875 44322 45667788888887 666754 55544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.73  E-value=1.5e-08  Score=95.38  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=79.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +.++|+|||+ |++|+.+++.+.+. ++++++.+++....-+..|++ |.+++++.+..++|++++++|+..+.+.+..|
T Consensus         8 ~~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~-~~~~~~l~~~~~~DvViiatp~~~h~~~~~~a   85 (304)
T 3bio_A            8 KKIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQP-FRVVSDIEQLESVDVALVCSPSREVERTALEI   85 (304)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC-------CCTT-SCEESSGGGSSSCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCC-cCCHHHHHhCCCCCEEEECCCchhhHHHHHHH
Confidence            4689999999 99999999988874 788887777654211225666 43333333223799999999999999999999


Q ss_pred             HHcCCcEEEEecC--CCChhHHHHHHHHHhccCCcE-EEcc
Q 020101          120 MEAELDLVVCITE--GIPQHDMVRVKAALNNQSKTR-LVGP  157 (331)
Q Consensus       120 ~~~Gi~~ivi~t~--G~~e~~~~~l~~~a~~~~gi~-viGP  157 (331)
                      +++|++.+ +-.+  +.+.++..+|.+.+ ++.|+. +++.
T Consensus        86 l~aG~~Vi-~ekP~~a~~~~~~~~l~~~a-~~~g~~~~v~~  124 (304)
T 3bio_A           86 LKKGICTA-DSFDIHDGILALRRSLGDAA-GKSGAAAVIAS  124 (304)
T ss_dssp             HTTTCEEE-ECCCCGGGHHHHHHHHHHHH-HHHTCEEECSC
T ss_pred             HHcCCeEE-ECCCCCCCCHHHHHHHHHHH-HhCCCEEEEeC
Confidence            99998864 4343  44556777888877 666744 5553

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.70  E-value=4.3e-08  Score=95.97  Aligned_cols=116  Identities=22%  Similarity=0.262  Sum_probs=88.7

Q ss_pred             CCeEEEEEcCCCC---CCcHHHHHHHHc-CCeEEE-EeCCCCCC-c---eecCc---ccccCHHHhhhc-----CCCCEE
Q 020101           41 KNTRVICQGITGK---NGTFHTEQAIEY-GTKMVG-GVTPKKGG-T---EHLGL---PVFNTVAEAKAE-----TKANAS  103 (331)
Q Consensus        41 k~~~VaIvGasgk---~G~~~~~~l~~~-g~~iv~-~VnP~~~g-~---~i~G~---p~y~sl~dl~~~-----~~iDla  103 (331)
                      +.++|+|||+ |+   +|+.+.+.+... ++++++ .+++.... +   +..|+   ++|.+++++.++     .++|++
T Consensus        36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           36 KRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence            5689999999 88   898888887775 478886 66776421 1   13577   599999999875     569999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccCC
Q 020101          104 AIYVPPPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPNC  159 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPnc  159 (331)
                      +|+||+..+.+.+.+|+++|++. ++=-+ ..+.++.++|.+++ +++|+. .+|-|.
T Consensus       115 ~I~tp~~~H~~~~~~al~aGkhV-l~EKPla~~~~ea~~l~~~a-~~~g~~~~v~~~~  170 (417)
T 3v5n_A          115 AIVTPNHVHYAAAKEFLKRGIHV-ICDKPLTSTLADAKKLKKAA-DESDALFVLTHNY  170 (417)
T ss_dssp             EECSCTTSHHHHHHHHHTTTCEE-EEESSSCSSHHHHHHHHHHH-HHCSSCEEEECGG
T ss_pred             EECCCcHHHHHHHHHHHhCCCeE-EEECCCcCCHHHHHHHHHHH-HHcCCEEEEEecc
Confidence            99999999999999999999885 44233 56677888888888 677754 556553

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.70  E-value=4.8e-08  Score=97.58  Aligned_cols=118  Identities=13%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             CCCeEEEEEcCC---CCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c---eecCcc---cccCHHHhhhcCCCCEEEEec
Q 020101           40 DKNTRVICQGIT---GKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLP---VFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        40 ~k~~~VaIvGas---gk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~p---~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+.++|+|||++   |.+|+.+++.+.+.  ++++++.+|+.... +   +..|++   +|.+++++.++.++|+++|+|
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t  116 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV  116 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence            356899999995   77888889988875  68899888876521 1   135665   899999999766899999999


Q ss_pred             ChhhHHHHHHHHHHcCC-----cEEEEecC-CCChhHHHHHHHHHhccCC-cE-EEccC
Q 020101          108 PPPFAAAAILEAMEAEL-----DLVVCITE-GIPQHDMVRVKAALNNQSK-TR-LVGPN  158 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi-----~~ivi~t~-G~~e~~~~~l~~~a~~~~g-i~-viGPn  158 (331)
                      |+..+.+.+.+|+++|+     +.|++=.+ ..+.++.++|.+++ +++| +. .+|.+
T Consensus       117 p~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a-~~~g~~~~~v~~~  174 (479)
T 2nvw_A          117 KVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSIS-QQRANLQTIICLQ  174 (479)
T ss_dssp             CHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHH-HTCTTCEEEEECG
T ss_pred             CcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHH-HHcCCeEEEEEec
Confidence            99999999999999992     44455332 45567788888888 6777 65 44544

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.69  E-value=2.7e-08  Score=98.14  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=89.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-ce------ecC---ccccc----CHHHhhhcCCCCEEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE------HLG---LPVFN----TVAEAKAETKANASA  104 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~~------i~G---~p~y~----sl~dl~~~~~iDlai  104 (331)
                      .+.++|+|||+ |.+|+.+++.+.+. ++++++.+|+.... +.      ..|   .++|.    +++++.++.++|+++
T Consensus        18 ~~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~   96 (444)
T 2ixa_A           18 PKKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVF   96 (444)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEE
T ss_pred             CCCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEE
Confidence            35689999999 99999999988875 78899888876521 11      124   57898    999999866799999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccCC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPNC  159 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPnc  159 (331)
                      |++|+..+.+.+.+|+++|.+. ++=-+ ..+.++.++|.+.+ +++|+. .++.|.
T Consensus        97 i~tp~~~h~~~~~~al~aGkhV-~~EKP~a~~~~ea~~l~~~a-~~~g~~~~v~~~~  151 (444)
T 2ixa_A           97 VSSPWEWHHEHGVAAMKAGKIV-GMEVSGAITLEECWDYVKVS-EQTGVPLMALENV  151 (444)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEE-EECCCCCSSHHHHHHHHHHH-HHHCCCEEECCGG
T ss_pred             EcCCcHHHHHHHHHHHHCCCeE-EEeCCCcCCHHHHHHHHHHH-HHhCCeEEEEecc
Confidence            9999999999999999999875 43222 34567788888887 666754 556553

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.69  E-value=2.4e-08  Score=94.65  Aligned_cols=113  Identities=12%  Similarity=0.015  Sum_probs=85.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +.+||+|+|+ |+||+.+++.+.+. ++++++.+|++...+.-.|+++|.+++++..  ++|++++++|+..+.+.+..|
T Consensus         2 ~~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~--~~DvViiatp~~~h~~~~~~a   78 (320)
T 1f06_A            2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAPK   78 (320)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHHH
T ss_pred             CCCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhc--CCCEEEEcCCcHHHHHHHHHH
Confidence            4689999998 99999999998876 6888888877642111136788899998874  799999999999999999999


Q ss_pred             HHcCCcEEEEecC-CCChhHH-HHHHHHHhccCC-cEEEccC
Q 020101          120 MEAELDLVVCITE-GIPQHDM-VRVKAALNNQSK-TRLVGPN  158 (331)
Q Consensus       120 ~~~Gi~~ivi~t~-G~~e~~~-~~l~~~a~~~~g-i~viGPn  158 (331)
                      +++|++. ++-++ +.+.++. ++|.+.+ ++++ +.++..+
T Consensus        79 l~aG~~V-v~ekp~~~~~~~~~~~l~~~a-~~~~~v~v~~~~  118 (320)
T 1f06_A           79 FAQFACT-VDTYDNHRDIPRHRQVMNEAA-TAAGNVALVSTG  118 (320)
T ss_dssp             HTTTSEE-ECCCCCGGGHHHHHHHHHHHH-HHHTCEEECSCS
T ss_pred             HHCCCEE-EECCCCcCCHHHHHHHHHHHH-HhCCCEEEEecC
Confidence            9999876 44444 4555665 7777777 5555 4555543

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.67  E-value=1.7e-08  Score=97.25  Aligned_cols=118  Identities=12%  Similarity=0.074  Sum_probs=86.3

Q ss_pred             CCCeEEEEEcCCCCCCcH-HH----HHHHHcC-CeEE---------EEeCCCCCC-c---eecCcc-cccCHHHhhhcCC
Q 020101           40 DKNTRVICQGITGKNGTF-HT----EQAIEYG-TKMV---------GGVTPKKGG-T---EHLGLP-VFNTVAEAKAETK   99 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~-~~----~~l~~~g-~~iv---------~~VnP~~~g-~---~i~G~p-~y~sl~dl~~~~~   99 (331)
                      ++.++|+|||+.|.+|+. ++    +.+.+.+ ..++         +.+++.... +   +..|++ +|.+++++.++.+
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~   83 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN   83 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence            567999999966999987 77    6666643 3321         456655411 1   136775 8999999998777


Q ss_pred             CCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       100 iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +|++++++|+..+.+.+.+|+++|++.++--.-..+.++..+|.+.+ +++|+. .++.|
T Consensus        84 iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a-~~~~~~~~v~~~  142 (383)
T 3oqb_A           84 DTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLA-NSKGVKHGTVQD  142 (383)
T ss_dssp             CCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHH-HHTTCCEEECCG
T ss_pred             CCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHH-HHcCCeEEEEec
Confidence            99999999999999999999999988532112245677888888888 677754 55554

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.64  E-value=3e-08  Score=94.09  Aligned_cols=109  Identities=12%  Similarity=0.132  Sum_probs=82.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--Ccee------cC--cccccCHHHhhhcCCCCEEEEecChhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEH------LG--LPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~~i------~G--~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      .+||+|||+ |.++..+++.+ ..++++++.+++...  .+..      .|  .++|.+++++.++.++|+++|+||+..
T Consensus         2 ~~rvgiiG~-G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A            2 SLKICVIGS-SGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL   79 (337)
T ss_dssp             CEEEEEECS-SSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred             ceEEEEEcc-chhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence            378999999 77777777777 557899988887541  1111      24  479999999988667999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      +.+.+.+|+++|.+.++=-.-..+.++.++|.+++ +++|..
T Consensus        80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~g~~  120 (337)
T 3ip3_A           80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVY-QKVRNE  120 (337)
T ss_dssp             HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH-HHHTTT
T ss_pred             HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH-HHhCCc
Confidence            99999999999988532112245667888888887 666654

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.49  E-value=8.7e-08  Score=94.79  Aligned_cols=113  Identities=15%  Similarity=0.050  Sum_probs=83.4

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc-e---ec-C----------------------cccccC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT-E---HL-G----------------------LPVFNT   90 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~-~---i~-G----------------------~p~y~s   90 (331)
                      ..+.++|+|||+ |++|+.+++.+.+. ++++++..|++.... .   .. |                      .++|.+
T Consensus        20 ~~k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D   98 (446)
T 3upl_A           20 TGKPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD   98 (446)
T ss_dssp             TTCCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred             cCCceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence            356799999999 99999998887764 788888877764211 0   11 3                      457899


Q ss_pred             HHHhhhcCCCCEEEEecCh-hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEE
Q 020101           91 VAEAKAETKANASAIYVPP-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL  154 (331)
Q Consensus        91 l~dl~~~~~iDlaii~vp~-~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~v  154 (331)
                      ++++.+..++|+++++||. +.+.+.+.+|+++|.+.+ +.......++..+|.+.| +++|+.+
T Consensus        99 ~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv-~~nk~l~~~eg~eL~~~A-~e~Gvvl  161 (446)
T 3upl_A           99 NDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLV-MMNVEADVTIGPYLKAQA-DKQGVIY  161 (446)
T ss_dssp             HHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEE-ECCHHHHHHHHHHHHHHH-HHHTCCE
T ss_pred             HHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEE-ecCcccCHHHHHHHHHHH-HHhCCee
Confidence            9999987789999999975 678999999999998874 333333234456777776 6676543

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.46  E-value=1.3e-05  Score=79.48  Aligned_cols=251  Identities=13%  Similarity=0.172  Sum_probs=149.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC----hhhHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP----PPFAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp----~~~~~~~v~~~  119 (331)
                      +|++|.-||.+++.++..+.+.|.-+-..|.-..  +  .++..-+-++-+.++++.++++++.-    +..-.++++.+
T Consensus       151 ~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~--~--~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~  226 (457)
T 2csu_A          151 NVAFISQSGALGAGIVYKTIKEDIGFSKFISVGN--M--ADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRV  226 (457)
T ss_dssp             SEEEEESCHHHHHHHHHHHHHTTCEESEEEECTT--C--CSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHH
T ss_pred             CEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCC--c--CCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHh
Confidence            4788999988888888888877654333444433  2  13322222444444456788887753    45566666666


Q ss_pred             HHcCCcEEEEecCCCChhHH-------------HHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEE
Q 020101          120 MEAELDLVVCITEGIPQHDM-------------VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIV  186 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G~~e~~~-------------~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~vali  186 (331)
                       ..+.+. +.+-.|-++...             .+....+-|+.|+..+- +---+..   ....+.- ..++-++|+++
T Consensus       227 -~~~KPV-v~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v~-~~~El~~---~~~~l~~-~~~~g~rvaii  299 (457)
T 2csu_A          227 -TKKKPI-IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVAN-TIDEMLS---MARAFSQ-PLPRGNKVAIM  299 (457)
T ss_dssp             -HHHSCE-EEEECC------------------CHHHHHHHHHHTTCEEES-SHHHHHH---HHTTTTS-CCCSSSEEEEE
T ss_pred             -cCCCCE-EEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeEEC-CHHHHHH---HHHHhcC-CCCCCCcEEEE
Confidence             345454 556666544321             12222222667764321 1000111   0011111 22456789999


Q ss_pred             ecChHHHHHHHHHHHhCCCCc---------------------eEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc
Q 020101          187 SRSGTLTYEAVFQTTAVGLGQ---------------------STCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI  245 (331)
Q Consensus       187 sQSG~~~~~~~~~~~~~g~g~---------------------s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~  245 (331)
                      +-||+++...++.+.+.|+-+                     ...+-+|..++ .-.+.+.++-+.+||++++|++.+-.
T Consensus       300 tngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~-~~~~~~al~~~l~dp~vd~vlv~~~~  378 (457)
T 2csu_A          300 TNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASAR-GEDYYRTAKLLLQDPNVDMLIAICVV  378 (457)
T ss_dssp             ESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCC-HHHHHHHHHHHHHSTTCSEEEEEEEC
T ss_pred             ECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCC-HHHHHHHHHHHhcCCCCCEEEEEccc
Confidence            999999999999999888763                     23555555431 23467788899999999999987742


Q ss_pred             --CC-Cc-HHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q 020101          246 --GG-TA-EEDAAALIKESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGA  318 (331)
Q Consensus       246 --~g-~~-~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~  318 (331)
                        .| .. ...+..+.++++   .+|||++...+.+.                   .+...+.|+++|+...+++++-..
T Consensus       379 ~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~-------------------~~~~~~~L~~~Gip~~~spe~Av~  439 (457)
T 2csu_A          379 PTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV-------------------SEKAKELLEKNGIPTYERPEDVAS  439 (457)
T ss_dssp             CCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT-------------------THHHHHHHHTTTCCEESSHHHHHH
T ss_pred             cccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcc-------------------hHHHHHHHHhCCCCccCCHHHHHH
Confidence              11 11 233445555443   67999996544221                   123466789999999999999998


Q ss_pred             HHHHHHH
Q 020101          319 AMLEVFK  325 (331)
Q Consensus       319 ~~~a~~~  325 (331)
                      ++.++++
T Consensus       440 al~~l~~  446 (457)
T 2csu_A          440 AAYALVE  446 (457)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.41  E-value=5e-07  Score=85.00  Aligned_cols=110  Identities=8%  Similarity=0.036  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCCCc-HHHHHHHHc-CCeEEEEeCCCCCCc----eecCccc-ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPV-FNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~-~~~~~l~~~-g~~iv~~VnP~~~g~----~i~G~p~-y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      ++|+|||+ |++|+ .+++.+.+. +++++ .+|++....    +..|++. |.+..++.. .++|++++++|+..+.+.
T Consensus         3 ~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~-~~~D~V~i~tp~~~h~~~   79 (323)
T 1xea_A            3 LKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQ-YGVDAVMIHAATDVHSTL   79 (323)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGG-GCCSEEEECSCGGGHHHH
T ss_pred             cEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcCCCccccCHHHHhh-cCCCEEEEECCchhHHHH
Confidence            68999999 99998 488888775 67888 888765211    1346664 554444442 379999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEc
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      +.+|+++|.+.++--....+.++.++|.+++ +++|+. .+|
T Consensus        80 ~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a-~~~g~~~~v~  120 (323)
T 1xea_A           80 AAFFLHLGIPTFVDKPLAASAQECENLYELA-EKHHQPLYVG  120 (323)
T ss_dssp             HHHHHHTTCCEEEESCSCSSHHHHHHHHHHH-HHTTCCEEEE
T ss_pred             HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH-HhcCCeEEEe
Confidence            9999999988643222245667778888887 677765 444

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.38  E-value=1.9e-06  Score=82.07  Aligned_cols=158  Identities=15%  Similarity=0.050  Sum_probs=103.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc---------CCeEEEEeCCCCCCcee-------------cCccccc--CHHHhhhc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGGTEH-------------LGLPVFN--TVAEAKAE   97 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~---------g~~iv~~VnP~~~g~~i-------------~G~p~y~--sl~dl~~~   97 (331)
                      .++|+|+|+ |++|+.+++.+.+.         ++++++..|++.  ...             ...+.|.  +++++.++
T Consensus         2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~--~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~   78 (327)
T 3do5_A            2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKS--SISGDFSLVEALRMKRETGMLRDDAKAIEVVRS   78 (327)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSC--EEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHH
T ss_pred             cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCCh--HhccccCHHHHHhhhccCccccCCCCHHHHhcC
Confidence            478999998 99999998877653         678998888764  211             1134666  89999887


Q ss_pred             CCCCEEEEecChhhH----HHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC--Ccccc
Q 020101           98 TKANASAIYVPPPFA----AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECKIG  171 (331)
Q Consensus        98 ~~iDlaii~vp~~~~----~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~--~~~~~  171 (331)
                      .++|+++++||++.+    .+.+.+|+++|++. ++-..+.-..+..+|.+.| +++|..+.-..+.|-..|.  .++-.
T Consensus        79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhV-v~~NKkpla~~~~eL~~~A-~~~g~~~~~ea~v~~g~Pii~~l~~~  156 (327)
T 3do5_A           79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHV-VTSNKGPLVAEFHGLMSLA-ERNGVRLMYEATVGGAMPVVKLAKRY  156 (327)
T ss_dssp             SCCSEEEECCCCC----CHHHHHHHHHTTTCEE-EECCSHHHHHHHHHHHHHH-HHTTCCEECGGGSSTTSCCHHHHHTT
T ss_pred             CCCCEEEECCCCcccchhHHHHHHHHHHCCCeE-EecCchhhHHHHHHHHHHH-HhhCCcEEEEEEeeecCHHHHHHHHH
Confidence            789999999999876    89999999999986 4322132123456787877 7888876644444444444  11111


Q ss_pred             cCCCCCCCCCCEEEEe--cChHHHHHHHHHHHhCCCCceEEE
Q 020101          172 IMPGYIHKPGRIGIVS--RSGTLTYEAVFQTTAVGLGQSTCV  211 (331)
Q Consensus       172 ~~~~~~~~~G~valis--QSG~~~~~~~~~~~~~g~g~s~~v  211 (331)
                            ...+.|.-|.  .||+... ++....+.|..|+.++
T Consensus       157 ------l~~~~I~~I~GIlnGT~ny-ilt~m~~~g~~f~~~l  191 (327)
T 3do5_A          157 ------LALCEIESVKGIFNGTCNY-ILSRMEEERLPYEHIL  191 (327)
T ss_dssp             ------TTTSCEEEEEEECCHHHHH-HHHHHHHHCCCHHHHH
T ss_pred             ------hhCCCccEEEEEECCCcCc-chhhcCcCCcCHHHHH
Confidence                  2335565554  3777544 5444444577777655

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.32  E-value=3.7e-07  Score=90.37  Aligned_cols=162  Identities=12%  Similarity=0.052  Sum_probs=107.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH----------cCCeEEEEeCCCCCCc-e-ecCcccccCHHHhhhcCCCCEEEEec
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE----------YGTKMVGGVTPKKGGT-E-HLGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~----------~g~~iv~~VnP~~~g~-~-i~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .|.++|+|+|+ |++|+.+++.+.+          .++++++.+|++.... . ..+.+.|.+++++.++.++|++++++
T Consensus         8 Mk~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~t   86 (444)
T 3mtj_A            8 MKPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELI   86 (444)
T ss_dssp             CSCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECC
T ss_pred             hCcccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcC
Confidence            46799999998 9999888766542          3567888888765211 1 23567899999999877899999999


Q ss_pred             Ch-hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC--CcccccCCCCCCCCCCEE
Q 020101          108 PP-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECKIGIMPGYIHKPGRIG  184 (331)
Q Consensus       108 p~-~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~--~~~~~~~~~~~~~~G~va  184 (331)
                      |+ +.+.+.+.+|+++|.+. ++-.+....++..+|.+.| +++|+.+.-..+.|-..|.  .++-      ....|.|+
T Consensus        87 p~~~~h~~~~~~AL~aGKhV-vtenkal~a~~~~eL~~~A-~~~gv~l~~Ea~V~~giPii~~Lre------lL~~~~Ig  158 (444)
T 3mtj_A           87 GGLEPARELVMQAIANGKHV-VTANKHLVAKYGNEIFAAA-QAKGVMVTFEAAVAGGIPIIKALRE------GLTANRIE  158 (444)
T ss_dssp             CSSTTHHHHHHHHHHTTCEE-EECCHHHHHHHHHHHHHHH-HHHTCCEECGGGSSTTSCHHHHHHT------TTTTSCEE
T ss_pred             CCchHHHHHHHHHHHcCCEE-EECCcccCHHHHHHHHHHH-HHhCCeEEEEEeeeCChHHHHHHHH------HHhCCCCc
Confidence            96 89999999999999886 4333333334567888887 7888776422222222332  1111      12345566


Q ss_pred             EEe--cChHHHHHHHHHHHhCCCCceEEE
Q 020101          185 IVS--RSGTLTYEAVFQTTAVGLGQSTCV  211 (331)
Q Consensus       185 lis--QSG~~~~~~~~~~~~~g~g~s~~v  211 (331)
                      =|.  -||+... ++....+.|..|+.++
T Consensus       159 ~I~GIlnGT~ny-ilt~m~~~g~~f~~~l  186 (444)
T 3mtj_A          159 WLAGIINGTSNF-ILSEMRDKGAAFDDVL  186 (444)
T ss_dssp             EEEEECCHHHHH-HHHHHHHHCCCHHHHH
T ss_pred             eEEEEEcCCccc-ccccCCCCCCCHHHHH
Confidence            554  3666554 3344444577777665

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.16  E-value=3.6e-06  Score=77.28  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=86.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      ...++|+++|. |++|+.+++.  . ++++++..+ ... .++ |+.+..+++++..  ++|+++-+.+++.+.+.+..+
T Consensus        10 ~~~~rV~i~G~-GaIG~~v~~~--~-~leLv~v~~-~k~-gel-gv~a~~d~d~lla--~pD~VVe~A~~~av~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGM-GNIGKKLVEL--G-NFEKIYAYD-RIS-KDI-PGVVRLDEFQVPS--DVSTVVECASPEAVKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHH--S-CCSEEEEEC-SSC-CCC-SSSEECSSCCCCT--TCCEEEECSCHHHHHHHHHHH
T ss_pred             cccceEEEECc-CHHHHHHHhc--C-CcEEEEEEe-ccc-ccc-CceeeCCHHHHhh--CCCEEEECCCHHHHHHHHHHH
Confidence            46789999999 9999999988  4 899887777 433 244 8888899999985  899999999999999999999


Q ss_pred             HHcCCcEEEEecCC-CChhH-HHHHHHHHhccCCcEEEccC
Q 020101          120 MEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G-~~e~~-~~~l~~~a~~~~gi~viGPn  158 (331)
                      +++|+.. ++.+.| +.+.+ .++|.++| +++|-++..|.
T Consensus        81 L~aG~dv-v~~S~gaLad~~l~~~L~~aA-~~gg~~l~vpS  119 (253)
T 1j5p_A           81 LKNPVNY-IIISTSAFADEVFRERFFSEL-KNSPARVFFPS  119 (253)
T ss_dssp             TTSSSEE-EECCGGGGGSHHHHHHHHHHH-HTCSCEEECCC
T ss_pred             HHCCCCE-EEcChhhhcCHHHHHHHHHHH-HHCCCeEEecC
Confidence            9999997 446776 44333 46777777 88888886654

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=98.16  E-value=3.2e-06  Score=80.49  Aligned_cols=159  Identities=14%  Similarity=0.000  Sum_probs=99.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc--------CCeEEEEeCCCCCC-ce-e-----------cCcc-ccc---CHHHhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY--------GTKMVGGVTPKKGG-TE-H-----------LGLP-VFN---TVAEAK   95 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~--------g~~iv~~VnP~~~g-~~-i-----------~G~p-~y~---sl~dl~   95 (331)
                      +.++|+|+|+ |++|+.+++.+.+.        ++++++..|++... +. +           .+++ .|.   +++++.
T Consensus         5 ~~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll   83 (331)
T 3c8m_A            5 KTINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL   83 (331)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH
T ss_pred             cEEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh
Confidence            4689999999 99999998887653        36788888876521 01 1           1332 555   899988


Q ss_pred             hcCCCCEEEEecChh----hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC--Ccc
Q 020101           96 AETKANASAIYVPPP----FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECK  169 (331)
Q Consensus        96 ~~~~iDlaii~vp~~----~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~--~~~  169 (331)
                       +.++|++++++|+.    .+.+.+.+|+++|.+. ++...+.-.++..+|.+.| +++|+.+.-..+.|--.|.  .+.
T Consensus        84 -~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhV-vtanK~pla~~~~eL~~~A-~~~gv~~~~ea~vg~giPii~~l~  160 (331)
T 3c8m_A           84 -ARDFDIVVDATPASADGKKELAFYKETFENGKDV-VTANKSGLANFWPEIMEYA-RSNNRRIRYEATVAGGVPLFSFID  160 (331)
T ss_dssp             -HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEE-EECCCHHHHHHHHHHHHHH-HHHTCCEECGGGSSTTSCCHHHHH
T ss_pred             -CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeE-EecCchhhHHHHHHHHHHH-HHcCCEEEEEeecccccHHHHHHH
Confidence             66899999999995    8899999999999886 4322222124556777777 7788766433333333343  111


Q ss_pred             cccCCCCCCCCCCEEEE--ecChHHHHHHHHHHHhCCCCceEEE
Q 020101          170 IGIMPGYIHKPGRIGIV--SRSGTLTYEAVFQTTAVGLGQSTCV  211 (331)
Q Consensus       170 ~~~~~~~~~~~G~vali--sQSG~~~~~~~~~~~~~g~g~s~~v  211 (331)
                      -..      ..+.|.-|  -.+|+.. .+++.. +.|..|+.++
T Consensus       161 ~~l------~g~~I~~I~GI~nGT~n-yil~~m-~~g~~f~~~l  196 (331)
T 3c8m_A          161 YSV------LPSRIKKFRGIVSLTIN-YFIREL-ANKREFDDVL  196 (331)
T ss_dssp             HHS------TTCCCCEEEEECCHHHH-HHHHHH-HTTCCHHHHH
T ss_pred             HHh------hcCcccEEEEEEeccce-eEecch-hcCCCHHHHH
Confidence            111      22344443  2366664 344333 4566666554

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=98.11  E-value=5.4e-06  Score=68.16  Aligned_cols=89  Identities=10%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC--CCceecCccccc--CHHHhhhcCCCCEEEEecChh---h
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK--GGTEHLGLPVFN--TVAEAKAETKANASAIYVPPP---F  111 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~--~g~~i~G~p~y~--sl~dl~~~~~iDlaii~vp~~---~  111 (331)
                      ++..+++|+|+ |..|+.+++.+.+. ||++++.+++..  .|..+.|+|++.  ++.++.++.++|.+++++|..   .
T Consensus         2 ~~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~~~~~   80 (141)
T 3nkl_A            2 NAKKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSASQVQ   80 (141)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTSCHHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCCCHHH
Confidence            35678999999 88999999988875 899998887654  345688999987  344443445799999999854   3


Q ss_pred             HHHHHHHHHHcCCcEEEE
Q 020101          112 AAAAILEAMEAELDLVVC  129 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi  129 (331)
                      ..++++.|.+.|++..++
T Consensus        81 ~~~i~~~l~~~gv~v~~v   98 (141)
T 3nkl_A           81 KKVIIESLAKLHVEVLTI   98 (141)
T ss_dssp             HHHHHHHHHTTTCEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEC
Confidence            478889999999997543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.06  E-value=1.9e-05  Score=74.37  Aligned_cols=112  Identities=11%  Similarity=0.073  Sum_probs=76.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAA  115 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~  115 (331)
                      ++..+|+|||+ |+||..+.+.|.+.|++++ .+|+.... +.  -.|+..+.+++++.+  +.|++++++|.. .+.++
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v  104 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGYALQ-VWNRTPARAASLAALGATIHEQARAAAR--DADIVVSMLENGAVVQDV  104 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCEEESSHHHHHT--TCSEEEECCSSHHHHHHH
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHCCCEeeCCHHHHHh--cCCEEEEECCCHHHHHHH
Confidence            34568999999 9999999999999999876 77776411 11  237788889999887  789999999964 55555


Q ss_pred             HH--HHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          116 IL--EAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       116 v~--~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +.  ...+ ..-..+++-.+..+....+++.+.+ ++.|+.++.
T Consensus       105 ~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~-~~~g~~~~~  147 (320)
T 4dll_A          105 LFAQGVAAAMKPGSLFLDMASITPREARDHAARL-GALGIAHLD  147 (320)
T ss_dssp             HTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             HcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHH-HHcCCEEEe
Confidence            53  3333 2223334434444455555666655 567877664

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=98.05  E-value=5e-06  Score=79.06  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=100.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-------CCeEEEEeCCCCCC--ce-----------ecC-cc--cccCHHHhhhc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-------GTKMVGGVTPKKGG--TE-----------HLG-LP--VFNTVAEAKAE   97 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-------g~~iv~~VnP~~~g--~~-----------i~G-~p--~y~sl~dl~~~   97 (331)
                      |.++|+|+|+ |++|+.+++.+.+.       ++++++..|.+...  +.           -.| ++  .| +..++..+
T Consensus         3 k~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~   80 (325)
T 3ing_A            3 KEIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG   80 (325)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred             ceEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence            5689999998 99999999887763       46788887765410  00           012 22  23 66777766


Q ss_pred             CCCCEEEEecChhh----HHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCC--Ccccc
Q 020101           98 TKANASAIYVPPPF----AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG--ECKIG  171 (331)
Q Consensus        98 ~~iDlaii~vp~~~----~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~--~~~~~  171 (331)
                      .++|++++++|+..    +.+.+.+|+++|++. +.-..+.-.++..+|.+.| +++|..+.=.-+.|--.|-  .++-.
T Consensus        81 ~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhV-VtaNK~~la~~~~eL~~lA-~~~g~~~~~Ea~vg~giPii~~l~~~  158 (325)
T 3ing_A           81 EAADLLVDCTPASRDGVREYSLYRMAFESGMNV-VTANKSGLANKWHDIMDSA-NQNSKYIRYEATVAGGVPLFSVLDYS  158 (325)
T ss_dssp             SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEE-EECCCHHHHHHHHHHHHHH-HHHTCCEECGGGSSTTSCCHHHHHHT
T ss_pred             CCCCEEEECCCCccccchHHHHHHHHHHCCCeE-EEcCchhHHHHHHHHHHHH-HHcCCeEEEEeeecccCHHHHHHHHH
Confidence            68999999999753    368899999999987 4333333235566788877 7888776544444433443  11111


Q ss_pred             cCCCCCCCCCCEEEEe--cChHHHHHHHHHHHhCCCCceEEE
Q 020101          172 IMPGYIHKPGRIGIVS--RSGTLTYEAVFQTTAVGLGQSTCV  211 (331)
Q Consensus       172 ~~~~~~~~~G~valis--QSG~~~~~~~~~~~~~g~g~s~~v  211 (331)
                            ...+.|.-|.  .||+... +++.. +.|..|+.++
T Consensus       159 ------l~g~~I~~i~Gi~nGT~ny-il~~m-~~g~~f~~~l  192 (325)
T 3ing_A          159 ------ILPSKVKRFRGIVSSTINY-VIRNM-ANGRSLRDVV  192 (325)
T ss_dssp             ------CTTCCEEEEEEECCHHHHH-HHHHH-HTTCCHHHHH
T ss_pred             ------hhCCCeeEEEEEEEeeeeE-Eeecc-cCCCCHHHHH
Confidence                  2235566654  5777543 44444 5666665444

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.99  E-value=1.7e-05  Score=73.20  Aligned_cols=109  Identities=14%  Similarity=0.102  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecC-hhhHHHHH--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAI--  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp-~~~~~~~v--  116 (331)
                      ++|+|||+ |+||..+.++|.+.|++++ .+|++...-+   -.|+..+.+++++.+  +.|++++++| +..+.+++  
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~v~~~   77 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVT-IWNRSPEKAEELAALGAERAATPCEVVE--SCPVTFAMLADPAAAEEVCFG   77 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEcCCHHHHHHHHcC
Confidence            57899999 9999999999999999876 7777652111   247788889999887  6899999999 56677776  


Q ss_pred             -HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 -LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 -~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                       ++..+. .-..+++-.++.+....+++.+.+ ++.|+.++.
T Consensus        78 ~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~-~~~g~~~~~  118 (287)
T 3pef_A           78 KHGVLEGIGEGRGYVDMSTVDPATSQRIGVAV-VAKGGRFLE  118 (287)
T ss_dssp             TTCHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             cchHhhcCCCCCEEEeCCCCCHHHHHHHHHHH-HHhCCEEEE
Confidence             444432 222334444555566666666665 566777664

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.95  E-value=2e-05  Score=73.79  Aligned_cols=113  Identities=15%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh-hHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAA  114 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~  114 (331)
                      ..+..+|+|||+ |+||..+.++|.+.|++++ ..|++...-+   -.|+..+.+++++.+  +.|++++++|.. .+.+
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~~~~~--~aDvvi~~vp~~~~~~~   93 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGFKVT-VWNRTLSKCDELVEHGASVCESPAEVIK--KCKYTIAMLSDPCAALS   93 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHH
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeEcCCHHHHHH--hCCEEEEEcCCHHHHHH
Confidence            445678999999 9999999999999999876 6777652111   247788889999887  689999999975 4555


Q ss_pred             HH---HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          115 AI---LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       115 ~v---~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ++   +.+... .-..+++-.+..+....+++.+.+ ++.|+.++.
T Consensus        94 v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~-~~~g~~~v~  138 (310)
T 3doj_A           94 VVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAI-TGKGGRFVE  138 (310)
T ss_dssp             HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             HHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEe
Confidence            55   333322 222334444455555556666655 566877765

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.90  E-value=7.3e-05  Score=69.88  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH--H
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--L  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v--~  117 (331)
                      .||.+||. |+||....++|.+.||+++ +.|++...-+   -.|.....|+.|+.+  +.|++++++|++.+.+.+  .
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~~dvvi~~l~~~~~~~~v~~~   81 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGYELV-VWNRTASKAEPLTKLGATVVENAIDAIT--PGGIVFSVLADDAAVEELFSM   81 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EC-------CTTTTTTCEECSSGGGGCC--TTCEEEECCSSHHHHHHHSCH
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHcCCeEeCCHHHHHh--cCCceeeeccchhhHHHHHHH
Confidence            36899999 9999999999999999976 5555431111   257788889999987  789999999987665432  2


Q ss_pred             HHH-HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCC
Q 020101          118 EAM-EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNC  159 (331)
Q Consensus       118 ~~~-~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc  159 (331)
                      +.. ..+-..+|+-.+-.+.+..+++.+.+ +++|++++ .|-+
T Consensus        82 ~~~~~~~~~~iiid~sT~~p~~~~~~~~~~-~~~g~~~ldapVs  124 (297)
T 4gbj_A           82 ELVEKLGKDGVHVSMSTISPETSRQLAQVH-EWYGAHYVGAPIF  124 (297)
T ss_dssp             HHHHHHCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEECCEE
T ss_pred             HHHhhcCCCeEEEECCCCChHHHHHHHHHH-HhcCCceecCCcC
Confidence            222 22333345444445566677777776 67888876 4443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.90  E-value=3.1e-05  Score=74.50  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=78.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhc-CCCCEEEEecChhhHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~-~~iDlaii~vp~~~~~~~v  116 (331)
                      +..+|+|||. |+||..+.++|.+.|++++ .+|++... +.  -.|+..+.+++++.+. ..+|++++++|+..+.+++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGHECV-VYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            4578999998 9999999999999999876 77776410 01  2477788899998763 2459999999999888888


Q ss_pred             HHHHHcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 LEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 ~~~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +.+...- -..+|+-.+.....+..++.+.+ ++.|+.+++
T Consensus        99 ~~l~~~l~~g~iiId~st~~~~~~~~~~~~l-~~~g~~~vd  138 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSHYQDDIRRADQM-RAQGITYVD  138 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCCHHHHHHHHHHH-HTTTCEEEE
T ss_pred             HHHHhhCCCCCEEEeCCCCChHHHHHHHHHH-HHCCCEEEe
Confidence            7765532 23334333333444555555555 577887764

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=97.89  E-value=0.00047  Score=68.72  Aligned_cols=256  Identities=16%  Similarity=0.107  Sum_probs=141.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--CceecCcccccCHHHhhhcCCCCEEEEecC---hhhHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVP---PPFAAAAI  116 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~~i~G~p~y~sl~dl~~~~~iDlaii~vp---~~~~~~~v  116 (331)
                      .=+|++|.-||.+++.++..+.+.|.-+-..|.-...  .+++.++..-+-++-+.++++.++++++.-   .....+.+
T Consensus       112 ~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~f~  191 (480)
T 3dmy_A          112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIV  191 (480)
T ss_dssp             EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHH
Confidence            3468899999999998888887765443334443220  012445443333444445567888888872   12224455


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCC-----CCCCCCCCEEEEecChH
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMP-----GYIHKPGRIGIVSRSGT  191 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~-----~~~~~~G~valisQSG~  191 (331)
                      +.+-+.+.+. +++-.|-++..       . ++.|+..+- +.--+++...+ +...+     ...++-.++++||-||+
T Consensus       192 ~~ar~~~KPV-V~~k~Grs~~g-------~-r~~Gvirv~-~~~el~~~a~~-l~~~~~~~~~qp~~~G~rvaivtn~Gg  260 (480)
T 3dmy_A          192 NAMKATGKPT-VALFLGYTPAV-------A-RDENVWFAS-SLDEAARLACL-LSRVTARRNAIAPVSSGFICGLYTGGT  260 (480)
T ss_dssp             HHHHHHCSCE-EEEETTCCCSS-------S-EETTEEEES-SHHHHHHHHHH-HHHHHHHHHHHCCCSCCEEEEEESCHH
T ss_pred             HHHHhCCCCE-EEEEeCCCCcc-------c-ccCCEEEEC-CHHHHHHHHHH-HhcCccccccCCCCCCCeEEEEECCHH
Confidence            5554566554 55667765433       1 222221110 00000000000 00000     01134446999999999


Q ss_pred             HHHHHHHHHHhCCCCce----------------EEEe-------cCCCCCC--CCCHHHHHHHhhcCCCccEEEE-EEcc
Q 020101          192 LTYEAVFQTTAVGLGQS----------------TCVG-------IGGDPFN--GTNFVDCVTKFIADPQTEGIIL-IGEI  245 (331)
Q Consensus       192 ~~~~~~~~~~~~g~g~s----------------~~vs-------~Gn~~~~--~v~~~d~l~~l~~Dp~T~~I~l-y~E~  245 (331)
                      ++....+.+.+ |+++.                ....       .||-.+.  .-.+.+.++-+.+||++.+|++ |+-+
T Consensus       261 ~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~d~~~~~~al~~~l~D~~vd~vlv~~v~~  339 (480)
T 3dmy_A          261 LAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIG  339 (480)
T ss_dssp             HHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHHHHHGGGCTTEEEEEEEEECS
T ss_pred             HHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCCCHHHHHHHHHHHhcCCCCCEEEEEeecC
Confidence            99999998877 66553                3333       4454310  1136788889999999998877 2311


Q ss_pred             CC---Cc-HHHHHHHHHHhC-C--CCC--EEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHH
Q 020101          246 GG---TA-EEDAAALIKESG-T--EKP--IVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI  316 (331)
Q Consensus       246 ~g---~~-~~~~~~f~~a~r-~--~KP--Vvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el  316 (331)
                      .+   ++ ..-++.+.++.+ .  +||  ++++-.|.... .              ...+.-.+.|+++|+..-+++++-
T Consensus       340 ~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~-~--------------~~~~~~~~~L~~aGIp~f~spe~A  404 (480)
T 3dmy_A          340 FGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERD-P--------------QCRSQQIATLEDAGIAVVSSLPEA  404 (480)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTS-T--------------TCHHHHHHHHHHTTCEECSSHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccc-h--------------hhHHHHHHHHHhCCCcccCCHHHH
Confidence            11   11 122233333333 3  799  44555554311 0              112234578999999999999998


Q ss_pred             HHHHHHHH
Q 020101          317 GAAMLEVF  324 (331)
Q Consensus       317 ~~~~~a~~  324 (331)
                      ..++..++
T Consensus       405 v~a~~~l~  412 (480)
T 3dmy_A          405 TLLAAALI  412 (480)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            88887665

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.89  E-value=1.8e-05  Score=76.13  Aligned_cols=112  Identities=12%  Similarity=0.036  Sum_probs=79.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCCCCCCcee---c-CcccccCHHHhhhcC-----C-------
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEH---L-GLPVFNTVAEAKAET-----K-------   99 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP~~~g~~i---~-G~p~y~sl~dl~~~~-----~-------   99 (331)
                      ++.++|+|+|+ |.+|+.+++.+.+.    ++++++..|.+.  ...   + |++.|.+++++.++.     +       
T Consensus         2 ~k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~   78 (358)
T 1ebf_A            2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAH   78 (358)
T ss_dssp             CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHH
T ss_pred             CceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHH
Confidence            45689999999 99999999998875    257887888543  222   1 677777777766532     2       


Q ss_pred             ------CCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC-CC--hhHHHHHHHHHhccCCcEEEcc
Q 020101          100 ------ANASAIYVPPPFAAAAILEAMEAELDLVVCITEG-IP--QHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       100 ------iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G-~~--e~~~~~l~~~a~~~~gi~viGP  157 (331)
                            +|+++++||...+.+...+|+++|.+. ++...+ ++  .++..+|. .| +++|+.+.=.
T Consensus        79 ~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhV-VtaNkkpla~~~~~~~eL~-~A-~~~gv~~~~E  142 (358)
T 1ebf_A           79 LKTSPKPVILVDNTSSAYIAGFYTKFVENGISI-ATPNKKAFSSDLATWKALF-SN-KPTNGFVYHE  142 (358)
T ss_dssp             HTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEE-ECCCCGGGSSCHHHHHHHT-CC-CTTCCCEECG
T ss_pred             hhhccCCcEEEEcCCChHHHHHHHHHHHCCCeE-EecCcccccCCHHHHHHHH-HH-HHcCCEEEEc
Confidence                  379999999887777778999999886 432233 32  35566777 66 7888776433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.88  E-value=8.4e-06  Score=78.12  Aligned_cols=114  Identities=13%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEE-EEeCCCCCC---c--eecCccc--ccCHHHhhhcCCCCEEEEecC
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG---T--EHLGLPV--FNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv-~~VnP~~~g---~--~i~G~p~--y~sl~dl~~~~~iDlaii~vp  108 (331)
                      .+.-+++||+|+|| |.+|+.+++.|.+ .+++. +.++++...   +  ....+.+  ..++.++..  +.|++|.++|
T Consensus        11 ~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi~~~p   86 (365)
T 3abi_A           11 HIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVIGALP   86 (365)
T ss_dssp             -----CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEEECCC
T ss_pred             cccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEEEecC
Confidence            34456789999999 9999999988865 35543 234432100   0  1111122  234666665  7899999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc  159 (331)
                      +..+..+++.|+++|++. +-++  +..++..++.+.+ +++|+.++ |.|
T Consensus        87 ~~~~~~v~~~~~~~g~~y-vD~s--~~~~~~~~l~~~a-~~~g~~~i-~~~  132 (365)
T 3abi_A           87 GFLGFKSIKAAIKSKVDM-VDVS--FMPENPLELRDEA-EKAQVTIV-FDA  132 (365)
T ss_dssp             GGGHHHHHHHHHHHTCEE-EECC--CCSSCGGGGHHHH-HHTTCEEE-CCC
T ss_pred             CcccchHHHHHHhcCcce-Eeee--ccchhhhhhhhhh-ccCCceee-ecC
Confidence            999999999999999997 3333  3333344555666 78888877 454

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.86  E-value=6.6e-05  Score=69.47  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ..+|+|||+ |+||+.+.+.+.+.|+   +++ ..|++... +   +..|+.++.+..++.+  +.|++++++|++...+
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~-v~dr~~~~~~~l~~~~gi~~~~~~~~~~~--~aDvVilav~p~~~~~   78 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRIC-VTNRSLDKLDFFKEKCGVHTTQDNRQGAL--NADVVVLAVKPHQIKM   78 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEE-EECSSSHHHHHHHHTTCCEEESCHHHHHS--SCSEEEECSCGGGHHH
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEE-EEeCCHHHHHHHHHHcCCEEeCChHHHHh--cCCeEEEEeCHHHHHH
Confidence            356889999 9999999999999888   665 77876521 0   1248888888888876  7899999999999999


Q ss_pred             HHHHHHHc--CCc-EEEEecCCCChhHHH
Q 020101          115 AILEAMEA--ELD-LVVCITEGIPQHDMV  140 (331)
Q Consensus       115 ~v~~~~~~--Gi~-~ivi~t~G~~e~~~~  140 (331)
                      +++++...  .-+ .++-.+.|++.+..+
T Consensus        79 vl~~l~~~~l~~~~iiiS~~agi~~~~l~  107 (280)
T 3tri_A           79 VCEELKDILSETKILVISLAVGVTTPLIE  107 (280)
T ss_dssp             HHHHHHHHHHTTTCEEEECCTTCCHHHHH
T ss_pred             HHHHHHhhccCCCeEEEEecCCCCHHHHH
Confidence            99887653  334 555567899755443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.84  E-value=8.4e-05  Score=69.06  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAIL  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v~  117 (331)
                      ..+|+|||+ |+||..+.++|.+.|++++ .+|++... +.  -.|+....+++++.+   .|++++++|. ..+.++++
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~---aDvvi~~vp~~~~~~~v~~   89 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPGGVT-VYDIRIEAMTPLAEAGATLADSVADVAA---ADLIHITVLDDAQVREVVG   89 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTTCEE-EECSSTTTSHHHHHTTCEECSSHHHHTT---SSEEEECCSSHHHHHHHHH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCEEcCCHHHHHh---CCEEEEECCChHHHHHHHH
Confidence            356899999 9999999999999999876 66665421 11  247788889999874   7999999995 46666776


Q ss_pred             HHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       118 ~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +..+. .-..+++-.+..+....+++.+.+ ++.|+.++.
T Consensus        90 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~-~~~g~~~~~  128 (296)
T 3qha_A           90 ELAGHAKPGTVIAIHSTISDTTAVELARDL-KARDIHIVD  128 (296)
T ss_dssp             HHHTTCCTTCEEEECSCCCHHHHHHHHHHH-GGGTCEEEE
T ss_pred             HHHHhcCCCCEEEEeCCCCHHHHHHHHHHH-HHcCCEEEe
Confidence            66553 223334444445555556666665 566777664

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.83  E-value=3.1e-05  Score=72.69  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=78.0

Q ss_pred             cCCCCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCC--CCc---eecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           38 FVDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK--GGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        38 l~~k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~--~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +.++..+|+|||+ |+||..+.+.|.+.|+ +++ .+|++.  ...   ...|+..+.+++++.+  +.|++++++|+..
T Consensus        20 ~~~~~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~   95 (312)
T 3qsg_A           20 FQSNAMKLGFIGF-GEAASAIASGLRQAGAIDMA-AYDAASAESWRPRAEELGVSCKASVAEVAG--ECDVIFSLVTAQA   95 (312)
T ss_dssp             -----CEEEEECC-SHHHHHHHHHHHHHSCCEEE-EECSSCHHHHHHHHHHTTCEECSCHHHHHH--HCSEEEECSCTTT
T ss_pred             ccCCCCEEEEECc-cHHHHHHHHHHHHCCCCeEE-EEcCCCCHHHHHHHHHCCCEEeCCHHHHHh--cCCEEEEecCchh
Confidence            3455678999999 9999999999999999 665 777741  101   1247788889999877  6899999999999


Q ss_pred             HHHHHHHHHHcC-CcEEEEecCCCChhHHHHHHHHHhccC--CcEEEcc
Q 020101          112 AAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQS--KTRLVGP  157 (331)
Q Consensus       112 ~~~~v~~~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~--gi~viGP  157 (331)
                      ..+++++....- -..+++-.+..+....+++.+.+ ++.  |+.++.+
T Consensus        96 ~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~-~~~~~g~~~vd~  143 (312)
T 3qsg_A           96 ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVI-SRHRPSAQYAAV  143 (312)
T ss_dssp             HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHH-HHHCTTCEEEEE
T ss_pred             HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHH-HhhcCCCeEEec
Confidence            998887776532 23344444455555555555544 344  6676643

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.81  E-value=3.6e-05  Score=71.99  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=74.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~  117 (331)
                      ..+|+|||+ |+||..+.++|.+.|++++ ..|++... +.  -.|...+.+++++.+  +.|++++++|... +.+++.
T Consensus         9 ~~~IgiIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            9 EFDVSVIGL-GAMGTIMAQVLLKQGKRVA-IWNRSPGKAAALVAAGAHLCESVKAALS--ASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             SCSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTCEECSSHHHHHH--HSSEEEECCSSHHHHHHHHT
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEeCCHHHHHHHhc
Confidence            456889999 9999999999999999876 67776410 01  247778889999887  6899999999765 555553


Q ss_pred             --HHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          118 --EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       118 --~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                        .+....-..+++-.+..+....+++.+.+ ++.|+.++.
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~-~~~g~~~vd  124 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLV-NQAGGHYVK  124 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHH-HHTTCEEEE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHH-HHcCCeEEe
Confidence              22222222334434444455556666655 567877664

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.81  E-value=3.7e-05  Score=69.56  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      .+|+|||+ |+||+.+.+.|.+.|    ++++ .+|++.  +. .|+.++.+.+++.+  +.|++++++|+..+.+++++
T Consensus         5 m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~--~~-~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~v~~~   77 (262)
T 2rcy_A            5 IKLGFMGL-GQMGSALAHGIANANIIKKENLF-YYGPSK--KN-TTLNYMSSNEELAR--HCDIIVCAVKPDIAGSVLNN   77 (262)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHHTSSCGGGEE-EECSSC--CS-SSSEECSCHHHHHH--HCSEEEECSCTTTHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCCCCCeEE-EEeCCc--cc-CceEEeCCHHHHHh--cCCEEEEEeCHHHHHHHHHH
Confidence            46899999 999999999998888    5665 777765  23 68888888888776  68999999999999998887


Q ss_pred             HHHc-CCcEEEEecCCCChhH
Q 020101          119 AMEA-ELDLVVCITEGIPQHD  138 (331)
Q Consensus       119 ~~~~-Gi~~ivi~t~G~~e~~  138 (331)
                      +... .-+.++..+.|++.+.
T Consensus        78 l~~~l~~~~vv~~~~gi~~~~   98 (262)
T 2rcy_A           78 IKPYLSSKLLISICGGLNIGK   98 (262)
T ss_dssp             SGGGCTTCEEEECCSSCCHHH
T ss_pred             HHHhcCCCEEEEECCCCCHHH
Confidence            6543 2345666778887654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.78  E-value=0.00012  Score=67.32  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhH-HHHHH-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAIL-  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~~v~-  117 (331)
                      ++|+|||+ |++|+.+.+.|.+.|++++ .+| +... +.  -.|+..+.+++++.+  +.|++++++|.... ..++. 
T Consensus         4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~~~   78 (295)
T 1yb4_A            4 MKLGFIGL-GIMGSPMAINLARAGHQLH-VTT-IGPVADELLSLGAVNVETARQVTE--FADIIFIMVPDTPQVEDVLFG   78 (295)
T ss_dssp             CEEEECCC-STTHHHHHHHHHHTTCEEE-ECC-SSCCCHHHHTTTCBCCSSHHHHHH--TCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCEEE-EEc-CHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEECCCHHHHHHHHhC
Confidence            57899998 9999999999998899865 566 4311 11  137778889999877  79999999988774 45554 


Q ss_pred             --HHHH-cCCcE-EEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          118 --EAME-AELDL-VVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       118 --~~~~-~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                        +... ..-.. ++..+++ .....+++.+.+ ++.+++++.
T Consensus        79 ~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~-~~~g~~~~~  119 (295)
T 1yb4_A           79 EHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRV-NEMGADYLD  119 (295)
T ss_dssp             TTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHH-HTTTEEEEE
T ss_pred             chhHhhcCCCCCEEEECCCC-CHHHHHHHHHHH-HHcCCeEEE
Confidence              2222 12223 3334555 334445566655 456777763

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.76  E-value=2.6e-05  Score=70.68  Aligned_cols=92  Identities=11%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      .++|+|||+ |+||+.+.+.+.+.|+++. .+|++... +.   ..|+..+.+++++.+  ++|++++++|++.+.++++
T Consensus         3 ~m~i~iiG~-G~mG~~~a~~l~~~g~~v~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~Vi~~v~~~~~~~v~~   78 (259)
T 2ahr_A            3 AMKIGIIGV-GKMASAIIKGLKQTPHELI-ISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLK   78 (259)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTSSCEEE-EECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHT
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHHcCCEeeCCHHHHHh--cCCEEEEEeCcHhHHHHHH
Confidence            468999998 9999999999988887654 77776411 11   237888889999877  7999999999998888887


Q ss_pred             HHHHcCCcEEEEecCCCChhHH
Q 020101          118 EAMEAELDLVVCITEGIPQHDM  139 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~~  139 (331)
                      ++. .|. .++..+.|++.+..
T Consensus        79 ~l~-~~~-~vv~~~~~~~~~~l   98 (259)
T 2ahr_A           79 PLH-FKQ-PIISMAAGISLQRL   98 (259)
T ss_dssp             TSC-CCS-CEEECCTTCCHHHH
T ss_pred             Hhc-cCC-EEEEeCCCCCHHHH
Confidence            653 443 44445568876543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.75  E-value=6.2e-05  Score=69.39  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI--  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v--  116 (331)
                      .+|+|||+ |+||..+.++|.+.|++++ ..|++...-+   -.|.....+++++.+  +.|++++++|.. .+.+++  
T Consensus         2 ~~I~iiG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~advvi~~v~~~~~~~~v~~~   77 (287)
T 3pdu_A            2 TTYGFLGL-GIMGGPMAANLVRAGFDVT-VWNRNPAKCAPLVALGARQASSPAEVCA--ACDITIAMLADPAAAREVCFG   77 (287)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHHTCCEE-EECSSGGGGHHHHHHTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHH--cCCEEEEEcCCHHHHHHHHcC
Confidence            35889998 9999999999999999876 6676652111   247778889999887  689999999986 555555  


Q ss_pred             -HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 -LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 -~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                       +...+. .-..+++-++..+....+++.+.+ ++.|+.++.
T Consensus        78 ~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~-~~~g~~~~~  118 (287)
T 3pdu_A           78 ANGVLEGIGGGRGYIDMSTVDDETSTAIGAAV-TARGGRFLE  118 (287)
T ss_dssp             TTCGGGTCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             chhhhhcccCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEE
Confidence             333332 122334434444555555666655 566777664

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.74  E-value=4.2e-05  Score=72.22  Aligned_cols=90  Identities=13%  Similarity=0.051  Sum_probs=69.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHH-c-CCeEEEEeCCCCCC--ce---ecCccc-ccCHHHhhhc---CCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIE-Y-GTKMVGGVTPKKGG--TE---HLGLPV-FNTVAEAKAE---TKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~-~-g~~iv~~VnP~~~g--~~---i~G~p~-y~sl~dl~~~---~~iDlaii~vp~  109 (331)
                      +.++|+|||+ |.+|+.+++.+.+ . +.++++.+++....  ..   ..|.+. +.+++++.++   .++|++++++|+
T Consensus         3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~   81 (312)
T 1nvm_B            3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (312)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence            4689999996 9999999998865 4 67888777766421  12   356664 5678888653   469999999999


Q ss_pred             hhHHHHHHHHHHc--CCcEEEEecC
Q 020101          110 PFAAAAILEAMEA--ELDLVVCITE  132 (331)
Q Consensus       110 ~~~~~~v~~~~~~--Gi~~ivi~t~  132 (331)
                      +.+.+.+.+++++  |.+. ++.++
T Consensus        82 ~~h~~~a~~al~a~~Gk~V-i~ekp  105 (312)
T 1nvm_B           82 SAHVQNEALLRQAKPGIRL-IDLTP  105 (312)
T ss_dssp             HHHHHHHHHHHHHCTTCEE-EECST
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEcCc
Confidence            9999999999999  9886 54444

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.74  E-value=3.7e-05  Score=69.89  Aligned_cols=93  Identities=17%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      ++|+|||+ |+||+.+.+.+.+.|++++..+|++... +   +..|+..+.+++++.+  +.|++++++|+..+.+++++
T Consensus        11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~av~~~~~~~v~~~   87 (266)
T 3d1l_A           11 TPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNP--YAKLYIVSLKDSAFAELLQG   87 (266)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCS--CCSEEEECCCHHHHHHHHHH
T ss_pred             CeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhc--CCCEEEEecCHHHHHHHHHH
Confidence            57899999 9999999999988899855578876410 0   1137778888888776  79999999999998888887


Q ss_pred             HHHc--CCcEEEEecCCCChhH
Q 020101          119 AMEA--ELDLVVCITEGIPQHD  138 (331)
Q Consensus       119 ~~~~--Gi~~ivi~t~G~~e~~  138 (331)
                      +...  .=+.++..++|++.+.
T Consensus        88 l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           88 IVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             HHTTCCTTCEEEECCTTSCGGG
T ss_pred             HHhhcCCCcEEEECCCCCchHH
Confidence            7652  1134555777887554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.73  E-value=0.00011  Score=67.69  Aligned_cols=107  Identities=12%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecC-hhhHHHHH--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAI--  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp-~~~~~~~v--  116 (331)
                      ++|+|||+ |.+|+.+.+.+.+.|++++ .+|++... +.  -.|+..+.+++++.+  +.|++++++| +.....++  
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~v~~~~~~~~~~~~   81 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVALG   81 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHHhC
Confidence            47999998 9999999999999899865 77765410 11  137778889988776  6899999999 45555555  


Q ss_pred             -HHHH---HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 -LEAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 -~~~~---~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                       ++..   ..| +.++..++|.+ ...+++.+.+ .+.|+.++.
T Consensus        82 ~~~l~~~l~~~-~~vv~~s~~~~-~~~~~l~~~~-~~~g~~~~~  122 (299)
T 1vpd_A           82 ENGIIEGAKPG-TVLIDMSSIAP-LASREISDAL-KAKGVEMLD  122 (299)
T ss_dssp             TTCHHHHCCTT-CEEEECSCCCH-HHHHHHHHHH-HTTTCEEEE
T ss_pred             cchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHH-HHcCCeEEE
Confidence             2332   233 24454555653 3344555555 456777664

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=97.73  E-value=0.00018  Score=70.14  Aligned_cols=123  Identities=21%  Similarity=0.295  Sum_probs=93.7

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI  257 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~  257 (331)
                      ..|+|++|+-+|+++...++.+...|.....++-+|+.+. .-.+.+.++-+.+||++++|++.+=+. -+...-++...
T Consensus       246 l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a~-~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i~  324 (397)
T 3ufx_B          246 LDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAK-ADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVI  324 (397)
T ss_dssp             CSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCCC-HHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCCC-HHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence            4699999999999999999999999999999999999862 446788888899999999999865432 11133455666


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q 020101          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE  322 (331)
Q Consensus       258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a  322 (331)
                      ++++   .+||||+.-.|..                    .+.-...|++.|+...+|+++-..++.+
T Consensus       325 ~a~~~~~~~kPvvv~~~G~~--------------------~~~~~~~l~~~gip~~~~~e~Aa~~~~~  372 (397)
T 3ufx_B          325 RALEEGLLTKPVVMRVAGTA--------------------EEEAKKLLEGKPVYMYPTSIEAAKVTVA  372 (397)
T ss_dssp             HHHTTTCCCSCEEEEEEEEC--------------------HHHHHHHTTTSSEEECSSHHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEEccCCC--------------------HHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence            6666   3799999887741                    2233457888998888888776666544

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.71  E-value=8.2e-05  Score=68.43  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=72.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-ce--ecCc--ccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TE--HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~~--i~G~--p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ..+|+|||+ |+||..+.+.+.+.  +++++ .+|++... +.  -.|.  ..+.+++++.+  +.|++++++|+....+
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~   81 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSDRSRDIALERGIVDEATADFKVFAA--LADVIILAVPIKKTID   81 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSHHHHHHHHHTTSCSEEESCTTTTGG--GCSEEEECSCHHHHHH
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCHHHHHHHHHcCCcccccCCHHHhhc--CCCEEEEcCCHHHHHH
Confidence            357999998 99999999998876  56765 77775410 11  1344  34567777665  6899999999999999


Q ss_pred             HHHHHHHc--CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          115 AILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       115 ~v~~~~~~--Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +++++...  .-..+++..++......+++.+.. .+.++++++
T Consensus        82 v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l-~~~~~~~v~  124 (290)
T 3b1f_A           82 FIKILADLDLKEDVIITDAGSTKYEIVRAAEYYL-KDKPVQFVG  124 (290)
T ss_dssp             HHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHH-TTSSCEEEE
T ss_pred             HHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhc-cccCCEEEE
Confidence            98887654  234445433444333334555544 334678775

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.71  E-value=5.4e-05  Score=71.97  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc----eec------------------CcccccCHHHhhhcCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----EHL------------------GLPVFNTVAEAKAETK   99 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~----~i~------------------G~p~y~sl~dl~~~~~   99 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++..++.....    +..                  ++++|.+.+++..  +
T Consensus         3 irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~--~   79 (334)
T 2czc_A            3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--K   79 (334)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--T
T ss_pred             cEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc--C
Confidence            78999999 99999999998875 678887665532100    011                  2356778899886  8


Q ss_pred             CCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       100 iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +|++++++|+..+.+.++.++++|.+. + ++...
T Consensus        80 vDvV~~aTp~~~h~~~a~~~l~aGk~V-i-~sap~  112 (334)
T 2czc_A           80 VDIIVDATPGGIGAKNKPLYEKAGVKA-I-FQGGE  112 (334)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHHTCEE-E-ECTTS
T ss_pred             CCEEEECCCccccHHHHHHHHHcCCce-E-eeccc
Confidence            999999999999999999999999763 4 44443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.70  E-value=0.00015  Score=68.34  Aligned_cols=100  Identities=14%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCce-----ecCc--ccccCHHH-hhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE-----HLGL--PVFNTVAE-AKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~-----i~G~--p~y~sl~d-l~~~~~iDlaii~vp~~  110 (331)
                      ...+|+|||+ |+||..+.+.+.+.|+  +++ ++|++.  +.     -.|.  ..+.++++ +..  +.|++++++|+.
T Consensus        32 ~~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~-~~dr~~--~~~~~a~~~G~~~~~~~~~~~~~~~--~aDvVilavp~~  105 (314)
T 3ggo_A           32 SMQNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINP--ESISKAVDLGIIDEGTTSIAKVEDF--SPDFVMLSSPVR  105 (314)
T ss_dssp             SCSEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCH--HHHHHHHHTTSCSEEESCTTGGGGG--CCSEEEECSCGG
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCCCEEE-EEECCH--HHHHHHHHCCCcchhcCCHHHHhhc--cCCEEEEeCCHH
Confidence            3467999998 9999999999999998  766 778765  22     1344  34667887 666  799999999999


Q ss_pred             hHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHH
Q 020101          111 FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus       111 ~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                      ...++++++... .-..+++-.++......+++.+..
T Consensus       106 ~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A          106 TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhc
Confidence            999998887763 344444433444433344444443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.69  E-value=0.00015  Score=66.83  Aligned_cols=109  Identities=11%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v  116 (331)
                      +..+|+|||+ |++|+.+.+.+.+.|++++ .+|++... +.  -.|+..+.+++++..  +.|++++++|... ...++
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp~~~~~~~v~   78 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGVTVY-AFDLMEANVAAVVAQGAQACENNQKVAA--ASDIIFTSLPNAGIVETVM   78 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHH
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECCCHHHHHHHH
Confidence            3468999998 9999999999998899866 67765410 01  137778889988876  6899999998655 45555


Q ss_pred             H---HHH---HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 L---EAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 ~---~~~---~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      .   +..   ..| +.++..++|.+ ...+++.+.+ ++.+++++.
T Consensus        79 ~~~~~l~~~l~~~-~~vv~~~~~~~-~~~~~l~~~~-~~~g~~~~~  121 (301)
T 3cky_A           79 NGPGGVLSACKAG-TVIVDMSSVSP-SSTLKMAKVA-AEKGIDYVD  121 (301)
T ss_dssp             HSTTCHHHHSCTT-CEEEECCCCCH-HHHHHHHHHH-HHTTCEEEE
T ss_pred             cCcchHhhcCCCC-CEEEECCCCCH-HHHHHHHHHH-HHcCCeEEE
Confidence            3   332   223 34455666653 3344555555 445777663

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.66  E-value=5.1e-05  Score=67.51  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..++..+.++|+|||+ |+||+.+.+.|.+.|++++..++++... +.   ..|...+.+..+..+  +.|++++++|+
T Consensus        15 ~~~~~~m~mmkI~IIG~-G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDvVilavp~   91 (220)
T 4huj_A           15 TENLYFQSMTTYAIIGA-GAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDAL--QADVVILAVPY   91 (220)
T ss_dssp             --CTTGGGSCCEEEEEC-HHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHT--TSSEEEEESCG
T ss_pred             ccchhhhcCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHh--cCCEEEEeCCh
Confidence            44555445578999998 9999999999999999877447766421 11   235555555444444  68999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      +.+.++++++....-+.++-.+.|+.
T Consensus        92 ~~~~~v~~~l~~~~~~ivi~~~~g~~  117 (220)
T 4huj_A           92 DSIADIVTQVSDWGGQIVVDASNAID  117 (220)
T ss_dssp             GGHHHHHTTCSCCTTCEEEECCCCBC
T ss_pred             HHHHHHHHHhhccCCCEEEEcCCCCC
Confidence            99999887764322235555666763

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.65  E-value=3.2e-05  Score=73.69  Aligned_cols=104  Identities=11%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc---------CCeEEEEeCCCCCCc-eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY---------GTKMVGGVTPKKGGT-EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~---------g~~iv~~VnP~~~g~-~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +.++|+|+|+ |.+|+.+++.+.+.         ++++++..+.+.... .+.....|.+++++.   ++|++++++|..
T Consensus         2 k~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll---~iDvVve~t~~~   77 (332)
T 2ejw_A            2 EALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL---EADLVVEAMGGV   77 (332)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT---TCSEEEECCCCS
T ss_pred             CeeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh---CCCEEEECCCCc
Confidence            3588999999 99999999887764         467887777654211 122234677888887   599999999976


Q ss_pred             -hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccC
Q 020101          111 -FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQS  150 (331)
Q Consensus       111 -~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~  150 (331)
                       .+.+.+++|+++|.+. ++-..+.-.++..+|.+.| +++
T Consensus        78 ~~a~~~~~~AL~aGKhV-VtaNkkpla~~~~eL~~~A-~~~  116 (332)
T 2ejw_A           78 EAPLRLVLPALEAGIPL-ITANKALLAEAWESLRPFA-EEG  116 (332)
T ss_dssp             HHHHHHHHHHHHTTCCE-EECCHHHHHHSHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHHHcCCeE-EECCchhHHHHHHHHHHHH-HhC
Confidence             5788999999999997 4321221114456777777 555

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.65  E-value=0.00013  Score=67.05  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v~~~  119 (331)
                      +|+|||+ |+||+.+.+.+.+.|++++ .+|++... +.  -.|+.++.+++++..  +.|++++++|.. ...+++.+.
T Consensus         2 ~i~iiG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~Dvvi~~vp~~~~~~~v~~~~   77 (296)
T 2gf2_A            2 PVGFIGL-GNMGNPMAKNLMKHGYPLI-IYDVFPDACKEFQDAGEQVVSSPADVAE--KADRIITMLPTSINAIEAYSGA   77 (296)
T ss_dssp             CEEEECC-STTHHHHHHHHHHTTCCEE-EECSSTHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHST
T ss_pred             eEEEEec-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHhCc
Confidence            5789999 9999999999999899866 77775410 11  147778889988776  689999999754 555555542


Q ss_pred             ---HH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          120 ---ME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       120 ---~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                         .. ..-..+++-+.|.+.+..+++.+.+ .+.+..++
T Consensus        78 ~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~-~~~g~~~~  116 (296)
T 2gf2_A           78 NGILKKVKKGSLLIDSSTIDPAVSKELAKEV-EKMGAVFM  116 (296)
T ss_dssp             TSGGGTCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEE
T ss_pred             hhHHhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEE
Confidence               11 1222334447788777666665555 33454443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.63  E-value=0.00019  Score=56.10  Aligned_cols=86  Identities=15%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce--ecCcccc-------cCHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE--HLGLPVF-------NTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~--i~G~p~y-------~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|+|+|+ |.+|+.+.+.+.+.| ++++ .++.+... +.  ..++..+       .+++++.+  ++|+++.++|..
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~-~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~~   80 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNYSVT-VADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFDAVISAAPFF   80 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSEEEE-EEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCch
Confidence            467899999 999999999999998 7765 55554310 01  1122221       23445554  799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ....+++.|.+.|++.+. +++
T Consensus        81 ~~~~~~~~~~~~g~~~~~-~~~  101 (118)
T 3ic5_A           81 LTPIIAKAAKAAGAHYFD-LTE  101 (118)
T ss_dssp             GHHHHHHHHHHTTCEEEC-CCS
T ss_pred             hhHHHHHHHHHhCCCEEE-ecC
Confidence            999999999999999743 443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.62  E-value=0.00013  Score=68.00  Aligned_cols=109  Identities=12%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e--ecCcccccCHHHhhhcCCCCEEEEecC-hhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~--i~G~p~y~sl~dl~~~~~iDlaii~vp-~~~~~~~v~~  118 (331)
                      .+|+|||+ |+||..+.+.+.+.|++++ .+|++.... .  -.|..++.+++++.+  +.|++++++| +....+++.+
T Consensus        31 ~~I~iIG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~DvVi~av~~~~~~~~v~~~  106 (316)
T 2uyy_A           31 KKIGFLGL-GLMGSGIVSNLLKMGHTVT-VWNRTAEKCDLFIQEGARLGRTPAEVVS--TCDITFACVSDPKAAKDLVLG  106 (316)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSGGGGHHHHHTTCEECSCHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHcCCEEcCCHHHHHh--cCCEEEEeCCCHHHHHHHHcC
Confidence            56899998 9999999999998899865 677654211 1  146777888888776  6899999999 6777776654


Q ss_pred             HH---H-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          119 AM---E-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       119 ~~---~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ..   + ..-..+++-.+..+....+++.+.+ .+.++++++
T Consensus       107 ~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~-~~~~~~~v~  147 (316)
T 2uyy_A          107 PSGVLQGIRPGKCYVDMSTVDADTVTELAQVI-VSRGGRFLE  147 (316)
T ss_dssp             TTCGGGGCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             chhHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEE
Confidence            21   1 1222333323334444455565555 445777764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.61  E-value=0.00022  Score=66.85  Aligned_cols=108  Identities=11%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      .||.+||. |+||....++|.+.||+++ +.|.+...-+   -.|....+|++|+.+  ..|+++.++|...+.+.+-.-
T Consensus         4 ~kIgfIGl-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~a~s~~e~~~--~~dvv~~~l~~~~~v~~V~~~   79 (300)
T 3obb_A            4 KQIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYLD   79 (300)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHT--TCSEEEECCSCHHHHHHHHHS
T ss_pred             CEEEEeee-hHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHcCCEEcCCHHHHHh--cCCceeecCCchHHHHHHHhc
Confidence            47899999 9999999999999999976 6676541011   257888899999987  799999999987665544321


Q ss_pred             ----HHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          120 ----MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       120 ----~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                          .+. .-..+||-.+-.+.++.+++.+.+ +++|+.++
T Consensus        80 ~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~-~~~G~~~l  119 (300)
T 3obb_A           80 DDGLLAHIAPGTLVLECSTIAPTSARKIHAAA-RERGLAML  119 (300)
T ss_dssp             SSSSTTSCCC-CEEEECSCCCHHHHHHHHHHH-HTTTCEEE
T ss_pred             hhhhhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEE
Confidence                111 112334433344566777777777 78898877

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.60  E-value=0.00018  Score=65.13  Aligned_cols=100  Identities=15%  Similarity=0.121  Sum_probs=69.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      +|.|||+ |+||..+.+.|.+.|++++ ..|+....+.     -.|+.  .+++++.+  +.|++++++|+....+.+.+
T Consensus         2 ~I~iIG~-G~mG~~la~~l~~~g~~V~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~--~aDvvi~~v~~~~~~~~~~~   75 (264)
T 1i36_A            2 RVGFIGF-GEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVT--ETSEEDVY--SCPVVISAVTPGVALGAARR   75 (264)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEE-ECCTTCCHHHHHHHHHHTCE--ECCHHHHH--TSSEEEECSCGGGHHHHHHH
T ss_pred             eEEEEec-hHHHHHHHHHHHHCCCeEE-EeCCccCHHHHHHHHHCCCc--CCHHHHHh--cCCEEEEECCCHHHHHHHHH
Confidence            6889999 9999999999999999877 4677321011     13554  67777766  78999999999887777776


Q ss_pred             HHHcCCcEEEEecCCCChhHHHHHHHHHhccCC
Q 020101          119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSK  151 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g  151 (331)
                      ..+.--+ +++-.++.+....+++.+.+ .+.|
T Consensus        76 ~~~~~~~-~vi~~s~~~~~~~~~l~~~~-~~~g  106 (264)
T 1i36_A           76 AGRHVRG-IYVDINNISPETVRMASSLI-EKGG  106 (264)
T ss_dssp             HHTTCCS-EEEECSCCCHHHHHHHHHHC-SSSE
T ss_pred             HHHhcCc-EEEEccCCCHHHHHHHHHHH-hhCC
Confidence            6654333 45445566655556666655 4443

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.60  E-value=7.2e-05  Score=74.57  Aligned_cols=118  Identities=9%  Similarity=0.097  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc------CCeEEEEeCCCCCCc---eecCcccc----cCHHHhhhcCCCCEEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKGGT---EHLGLPVF----NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~------g~~iv~~VnP~~~g~---~i~G~p~y----~sl~dl~~~~~iDlaii~vp~  109 (331)
                      .+|+|||. |+||..++++|++.      |++++...+......   .-.|+...    .+++|+.+  +.|++++++|+
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~--~ADVVILaVP~  131 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVS--GSDLVLLLISD  131 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHH--HCSEEEECSCH
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHh--cCCEEEECCCh
Confidence            57889999 99999999999998      998664555432111   13576652    57888877  68999999999


Q ss_pred             hhHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101          110 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus       110 ~~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      ....+++++...+ .-..+|.++.||+-...++-.....+...+-.+.||+.|..
T Consensus       132 ~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~  186 (525)
T 3fr7_A          132 AAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPS  186 (525)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHH
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchh
Confidence            9888888775542 33456789999964433210001101223446679998875

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.59  E-value=0.00012  Score=70.09  Aligned_cols=91  Identities=13%  Similarity=0.045  Sum_probs=65.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------C--cccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G--LPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G--~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +.+||+|+||+|.+|+.+++.|.+. .+++++..+....|..+.       |  -..+.+++++ .  ++|+++.++|..
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~~-~--~vDvV~~a~g~~   79 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEKL-E--PADILVLALPHG   79 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGGC-C--CCSEEEECCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhHh-c--CCCEEEEcCCcH
Confidence            3578999999999999999998876 468886665443333221       1  0112233332 3  799999999999


Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          111 FAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      .+.+.+..+.++|++. |..+.-|.
T Consensus        80 ~s~~~a~~~~~aG~~V-Id~Sa~~r  103 (345)
T 2ozp_A           80 VFAREFDRYSALAPVL-VDLSADFR  103 (345)
T ss_dssp             HHHHTHHHHHTTCSEE-EECSSTTS
T ss_pred             HHHHHHHHHHHCCCEE-EEcCcccc
Confidence            9999999999999984 55666553

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00021  Score=71.52  Aligned_cols=111  Identities=13%  Similarity=0.086  Sum_probs=74.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-e------cCcccccCHHHhhhc-CCCCEEEEecCh-hh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H------LGLPVFNTVAEAKAE-TKANASAIYVPP-PF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-i------~G~p~y~sl~dl~~~-~~iDlaii~vp~-~~  111 (331)
                      +.+|+|||+ |.||..+.++|.+.|++++ ..|+.... +. .      .|+....+++++.+. .++|++++++|+ ..
T Consensus        10 ~~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   87 (497)
T 2p4q_A           10 SADFGLIGL-AVMGQNLILNAADHGFTVC-AYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAP   87 (497)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHH
T ss_pred             CCCEEEEee-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHH
Confidence            346889999 9999999999999999876 77765411 11 1      367778889988762 138999999999 57


Q ss_pred             HHHHHHHHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          112 AAAAILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       112 ~~~~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +.++++++... .- +.+|..+++. ..+..++.+.+ ++.|+.+++
T Consensus        88 v~~vl~~l~~~l~~g~iIId~s~~~-~~~~~~l~~~l-~~~g~~~v~  132 (497)
T 2p4q_A           88 VDALINQIVPLLEKGDIIIDGGNSH-FPDSNRRYEEL-KKKGILFVG  132 (497)
T ss_dssp             HHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCC-hhHHHHHHHHH-HHcCCceeC
Confidence            77788766543 12 2334355554 33444455554 456777664

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.53  E-value=0.00011  Score=68.34  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=73.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCccc-ccCHHHhhhcCCCCEEEEecChhh-HHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPV-FNTVAEAKAETKANASAIYVPPPF-AAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~-y~sl~dl~~~~~iDlaii~vp~~~-~~~~  115 (331)
                      +..+|+|||+ |+||..+.+.|.+.|++++ .+|++... +.  -.|... ..+++++.+  +.|++++++|... +..+
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~e~~~--~aDvvi~~vp~~~~~~~v   81 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGLSTW-GADLNPQACANLLAEGACGAAASAREFAG--VVDALVILVVNAAQVRQV   81 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCSEEESSSTTTTT--TCSEEEECCSSHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccCCHHHHHh--cCCEEEEECCCHHHHHHH
Confidence            4567999999 9999999999999999876 77776410 01  136655 778888876  7899999999864 4444


Q ss_pred             H---HHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          116 I---LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       116 v---~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +   ++.... .-..+++-.+..+....+++.+.+ ++.|+.++.
T Consensus        82 ~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~-~~~g~~~~~  125 (303)
T 3g0o_A           82 LFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAAL-TALNLNMLD  125 (303)
T ss_dssp             HC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHH-HTTTCEEEE
T ss_pred             HhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHH-HHcCCeEEe
Confidence            4   333221 122334444445555556666655 567777664

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.48  E-value=0.00033  Score=63.99  Aligned_cols=106  Identities=10%  Similarity=-0.068  Sum_probs=67.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--cCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILEA  119 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~~~  119 (331)
                      +|+|||+ |++|+.+.+.+.+ |++++ .+|++... +..  .|+..+. ++++..  +.|++++++|... ..+++++.
T Consensus         3 ~i~iiG~-G~~G~~~a~~l~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~D~vi~~v~~~~~~~~v~~~l   76 (289)
T 2cvz_A            3 KVAFIGL-GAMGYPMAGHLAR-RFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVA--EARVIFTCLPTTREVYEVAEAL   76 (289)
T ss_dssp             CEEEECC-STTHHHHHHHHHT-TSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGG--GCSEEEECCSSHHHHHHHHHHH
T ss_pred             eEEEEcc-cHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHCCCcccC-HHHHHh--CCCEEEEeCCChHHHHHHHHHH
Confidence            5889999 9999999999999 99865 77765410 111  2555555 666655  6899999999775 66666555


Q ss_pred             HHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       120 ~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ... .-..+++..+.......+++.+.+ ++.++.++.
T Consensus        77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~-~~~g~~~~~  113 (289)
T 2cvz_A           77 YPYLREGTYWVDATSGEPEASRRLAERL-REKGVTYLD  113 (289)
T ss_dssp             TTTCCTTEEEEECSCCCHHHHHHHHHHH-HTTTEEEEE
T ss_pred             HhhCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCEEEE
Confidence            432 223434333333444455566665 455766653

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.48  E-value=0.00021  Score=68.15  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=67.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCC---CCCceec-------C---ccccc--CHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK---KGGTEHL-------G---LPVFN--TVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~---~~g~~i~-------G---~p~y~--sl~dl~~~~~iDlai  104 (331)
                      ..++|+|+||+|..|+.+++.|.++ .+++++....+   ..|+.+.       |   .++.+  +.+++.+  ++|+++
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dvvf   80 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDVVF   80 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc--CCCEEE
Confidence            3578999999999999999998885 67877554433   3344322       2   12211  3444433  799999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      .++|.....+.+.++.++|++. |-.++-|.
T Consensus        81 ~a~p~~~s~~~~~~~~~~g~~v-IDlSa~fR  110 (337)
T 3dr3_A           81 LATAHEVSHDLAPQFLEAGCVV-FDLSGAFR  110 (337)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEE-EECSSTTS
T ss_pred             ECCChHHHHHHHHHHHHCCCEE-EEcCCccc
Confidence            9999999999999999999986 55777764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.48  E-value=0.00017  Score=68.90  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhc--CCCCEEEEecChhhHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAE--TKANASAIYVPPPFAAA  114 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~--~~iDlaii~vp~~~~~~  114 (331)
                      |...+|+|||+ |+||..+.+.|.+.|++++ +.|++...-   .-.|+..+.+++++..+  .+.|++++++|+....+
T Consensus         6 ~~~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~   83 (341)
T 3ktd_A            6 DISRPVCILGL-GLIGGSLLRDLHAANHSVF-GYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDS   83 (341)
T ss_dssp             CCSSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHH
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHH
Confidence            34456889998 9999999999999999877 778764100   12466667788776541  14799999999999898


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ++++.....-..+++-..+....-.+++.+..   .+.++++
T Consensus        84 vl~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~---~~~~~v~  122 (341)
T 3ktd_A           84 LLDAVHTHAPNNGFTDVVSVKTAVYDAVKARN---MQHRYVG  122 (341)
T ss_dssp             HHHHHHHHCTTCCEEECCSCSHHHHHHHHHTT---CGGGEEC
T ss_pred             HHHHHHccCCCCEEEEcCCCChHHHHHHHHhC---CCCcEec
Confidence            88887765444444334445443333433221   1356665

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.47  E-value=0.00014  Score=69.39  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc----eecCcccccC-----------------HHHhhhcCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNT-----------------VAEAKAETKA  100 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~----~i~G~p~y~s-----------------l~dl~~~~~i  100 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++..++.....    ...|++.|.+                 ++++.+  ++
T Consensus         2 ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~--~v   78 (340)
T 1b7g_O            2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--TS   78 (340)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--HC
T ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc--CC
Confidence            68999999 99999999998876 678887766543100    0124555533                 334433  68


Q ss_pred             CEEEEecChhhHHHHHHHHHHcCCcEEE
Q 020101          101 NASAIYVPPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v~~~~~~Gi~~iv  128 (331)
                      |++++|+|+....+..+.++++|++.+.
T Consensus        79 DvV~~aTp~~~s~~~a~~~~~aG~kvV~  106 (340)
T 1b7g_O           79 DIVVDTTPNGVGAQYKPIYLQLQRNAIF  106 (340)
T ss_dssp             SEEEECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEECCCCchhHHHHHHHHHcCCeEEE
Confidence            9999999999999999999999999754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.47  E-value=0.00018  Score=71.71  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--c----CcccccCHHHhhhc-CCCCEEEEecCh-hhHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~----G~p~y~sl~dl~~~-~~iDlaii~vp~-~~~~  113 (331)
                      .+|+|||+ |.||+.+.++|.+.|++++ ..|++... +.+  .    |+....+++++.+. .++|++++++|+ ..+.
T Consensus        16 ~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   93 (480)
T 2zyd_A           16 QQIGVVGM-AVMGRNLALNIESRGYTVS-IFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTD   93 (480)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHH
T ss_pred             CeEEEEcc-HHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHH
Confidence            45889999 9999999999999999876 77775410 111  1    67778899988762 138999999999 5778


Q ss_pred             HHHHHHHHcC-C-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          114 AAILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       114 ~~v~~~~~~G-i-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ++++++...- - ..+|..+.|.+ .+..++.+.+ ++.|+++++
T Consensus        94 ~vl~~l~~~l~~g~iIId~s~g~~-~~t~~l~~~l-~~~g~~~v~  136 (480)
T 2zyd_A           94 AAIDSLKPYLDKGDIIIDGGNTFF-QDTIRRNREL-SAEGFNFIG  136 (480)
T ss_dssp             HHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHH-HHCCCCeeC
Confidence            8887765431 1 24444566653 3334445554 456777663

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.46  E-value=0.00029  Score=70.02  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--c----CcccccCHHHhhhc-CCCCEEEEecChh-hHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L----GLPVFNTVAEAKAE-TKANASAIYVPPP-FAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~----G~p~y~sl~dl~~~-~~iDlaii~vp~~-~~~  113 (331)
                      .+|+|||+ |.||+.+.++|.+.|+++. .+|+.... +.+  .    |+..+.+++++.+. .++|++++++|+. .+.
T Consensus         6 ~~IgvIG~-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~   83 (474)
T 2iz1_A            6 ANFGVVGM-AVMGKNLALNVESRGYTVA-IYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD   83 (474)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHH
T ss_pred             CcEEEEee-HHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHH
Confidence            46889999 9999999999999999865 77775410 111  1    67778899998762 1389999999994 667


Q ss_pred             HHHHHHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          114 AAILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       114 ~~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ++++++... .- +.++..+.+. ..+..++.+.+ ++.|+.+++
T Consensus        84 ~vl~~l~~~l~~g~iiId~s~~~-~~~~~~l~~~l-~~~g~~~v~  126 (474)
T 2iz1_A           84 ATIKSLLPLLDIGDILIDGGNTH-FPDTMRRNAEL-ADSGINFIG  126 (474)
T ss_dssp             HHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHT-TTSSCEEEE
T ss_pred             HHHHHHHhhCCCCCEEEECCCCC-HHHHHHHHHHH-HHCCCeEEC
Confidence            777665432 11 2344445554 33444555555 566777663

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.43  E-value=0.00029  Score=66.29  Aligned_cols=108  Identities=13%  Similarity=0.044  Sum_probs=75.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCC--C--ce------ecCccccc-CHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG--G--TE------HLGLPVFN-TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~--g--~~------i~G~p~y~-sl~dl~~~~~iDlaii~vp~  109 (331)
                      ..+|+|||+ |+||..+.+.|.+.| ++++ .+|++..  .  ++      -.|+  .. +++++.+  +.|++++++|+
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~--~aDvVi~avp~   97 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAARLA-AYDLRFNDPAASGALRARAAELGV--EPLDDVAGIA--CADVVLSLVVG   97 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCSEEE-EECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGG--GCSEEEECCCG
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCCeEE-EEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHh--cCCEEEEecCC
Confidence            357899998 999999999999999 8876 6665530  0  01      1355  66 7888776  68999999999


Q ss_pred             hhHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          110 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       110 ~~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ....+.+++.... .-..+++-.++.+....+++.+.. ++.|+.++.
T Consensus        98 ~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l-~~~g~~~~d  144 (317)
T 4ezb_A           98 AATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAI-ATGKGSFVE  144 (317)
T ss_dssp             GGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHH-HTSSCEEEE
T ss_pred             HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-HHcCCeEEe
Confidence            9999888776553 223445444566666666666665 566776553

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.43  E-value=0.00023  Score=68.10  Aligned_cols=90  Identities=16%  Similarity=0.108  Sum_probs=63.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeC-CCCCCcee---cC-----------cc-ccc--CHHHhhhcCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH---LG-----------LP-VFN--TVAEAKAETKAN  101 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~Vn-P~~~g~~i---~G-----------~p-~y~--sl~dl~~~~~iD  101 (331)
                      +.++|+|+||+|.+|+.+++.|.+. .+++++..+ ....|+.+   .+           .. .+.  +.+++ +  ++|
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~vD   79 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K--DVD   79 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T--TCS
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c--CCC
Confidence            4589999999999999999988876 567875542 32222322   11           11 122  23333 3  799


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       102 laii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      ++++++|...+.+.+..+.++|++. |-.++-|
T Consensus        80 vVf~atp~~~s~~~a~~~~~aG~~V-Id~s~~~  111 (350)
T 2ep5_A           80 VVLSALPNELAESIELELVKNGKIV-VSNASPF  111 (350)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCEE-EECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEE-EECCccc
Confidence            9999999999999999999999994 5455544

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.40  E-value=2.3e-05  Score=76.55  Aligned_cols=87  Identities=14%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC--CCCCCceecCcccccCHHHhhh--cCCCCEEEEecChhhHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGGTEHLGLPVFNTVAEAKA--ETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn--P~~~g~~i~G~p~y~sl~dl~~--~~~iDlaii~vp~~~~~~~  115 (331)
                      .+..+|+|+|| |..|+.+++.+.+.|+++++.+|  |...|..+.|+|++.. +++++  +.+++.+++++  ....++
T Consensus        50 ~~~~~v~IiGA-G~~G~~l~~~l~~~g~~ivgfiDdd~~~~g~~i~GipV~~~-~~l~~~~~~~~~~viiai--~~r~~i  125 (409)
T 2py6_A           50 GNATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIIST-DRFTELATHDRDLVALNT--CRYDGP  125 (409)
T ss_dssp             GGGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECH-HHHHHHHHTCTTEEEEEC--CCSHHH
T ss_pred             CCCCeEEEEeC-CHHHHHHHHHHHHCCCEEEEEEeCCcccccCEECCEEEECH-HHHHHHHhCCCCEEEEec--cHHHHH
Confidence            55678999999 99999999877777899998877  5555678999999974 44443  45678888888  344678


Q ss_pred             HHHHHHcCCcEEEEe
Q 020101          116 ILEAMEAELDLVVCI  130 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~  130 (331)
                      ++.+.+.|++.+|.|
T Consensus       126 ~~~l~~~g~~~il~f  140 (409)
T 2py6_A          126 KRFFDQICRTHGIPH  140 (409)
T ss_dssp             HHHHHHHHHHTTCCE
T ss_pred             HHHHHhcCCCEEEec
Confidence            888887777766655

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.39  E-value=6.5e-05  Score=70.85  Aligned_cols=91  Identities=19%  Similarity=0.232  Sum_probs=64.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--cC-----------cccccCHHHhhhcCCCCEEEEec
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LG-----------LPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~G-----------~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ..+|+|||+ |+||......|.+.|+++. .+|+.... +.+  .|           +.+..+.++ .+  +.|++++++
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~--~aDvVil~v   88 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGEEVI-LWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IK--KEDILVIAI   88 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC--TTEEEEECS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc--CCCEEEEEC
Confidence            467899999 9999999999999999876 67764310 111  12           355667777 44  689999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhH
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHD  138 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~  138 (331)
                      |+..+.++++++.. .=+.++.++.|++.++
T Consensus        89 k~~~~~~v~~~l~~-~~~~vv~~~nGi~~~~  118 (335)
T 1z82_A           89 PVQYIREHLLRLPV-KPSMVLNLSKGIEIKT  118 (335)
T ss_dssp             CGGGHHHHHTTCSS-CCSEEEECCCCCCTTT
T ss_pred             CHHHHHHHHHHhCc-CCCEEEEEeCCCCCCc
Confidence            99888888866433 2245666777886543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.39  E-value=0.00016  Score=68.76  Aligned_cols=106  Identities=18%  Similarity=0.256  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH----
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI----  116 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v----  116 (331)
                      ..+|.|||+ |++|+.+++.+...|++++ ..|+..  +...|...+.+++++..  +.|++++++|.. ....++    
T Consensus       164 g~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~dr~~--~~~~g~~~~~~l~ell~--~aDvVil~vP~~~~t~~li~~~~  237 (333)
T 3ba1_A          164 GKRVGIIGL-GRIGLAVAERAEAFDCPIS-YFSRSK--KPNTNYTYYGSVVELAS--NSDILVVACPLTPETTHIINREV  237 (333)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSC--CTTCCSEEESCHHHHHH--TCSEEEECSCCCGGGTTCBCHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCc--hhccCceecCCHHHHHh--cCCEEEEecCCChHHHHHhhHHH
Confidence            346888999 9999999999999999977 677765  33346666788999887  789999999974 233332    


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ....+.| ..+++.+.|.. .+..+|.+.. ++.++.-.|
T Consensus       238 l~~mk~g-ailIn~srG~~-vd~~aL~~aL-~~g~i~ga~  274 (333)
T 3ba1_A          238 IDALGPK-GVLINIGRGPH-VDEPELVSAL-VEGRLGGAG  274 (333)
T ss_dssp             HHHHCTT-CEEEECSCGGG-BCHHHHHHHH-HHTSSCEEE
T ss_pred             HhcCCCC-CEEEECCCCch-hCHHHHHHHH-HcCCCeEEE
Confidence            1223333 24455666643 2333455544 454454444

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.38  E-value=0.00039  Score=65.33  Aligned_cols=94  Identities=16%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC----CeEEEEeCCCCC--C-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKG--G-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g----~~iv~~VnP~~~--g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      .++|+|||+ |+||..+...|.+.|    ++++ .+|++..  . +.  ..|+.+..+..++.+  +.|++++++|+..+
T Consensus        22 ~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~--~aDvVilav~~~~~   97 (322)
T 2izz_A           22 SMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALRKMGVKLTPHNKETVQ--HSDVLFLAVKPHII   97 (322)
T ss_dssp             CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHHHHTCEEESCHHHHHH--HCSEEEECSCGGGH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHHHcCCEEeCChHHHhc--cCCEEEEEeCHHHH
Confidence            356899999 999999999999888    6665 7777642  0 11  247777778877776  68999999999999


Q ss_pred             HHHHHHHHHc-CC-cEEEEecCCCChhHH
Q 020101          113 AAAILEAMEA-EL-DLVVCITEGIPQHDM  139 (331)
Q Consensus       113 ~~~v~~~~~~-Gi-~~ivi~t~G~~e~~~  139 (331)
                      .+++++.... .- +.++.++.|++.+..
T Consensus        98 ~~vl~~l~~~l~~~~ivvs~s~gi~~~~l  126 (322)
T 2izz_A           98 PFILDEIGADIEDRHIVVSCAAGVTISSI  126 (322)
T ss_dssp             HHHHHHHGGGCCTTCEEEECCTTCCHHHH
T ss_pred             HHHHHHHHhhcCCCCEEEEeCCCCCHHHH
Confidence            9998876542 22 344556678875543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.38  E-value=0.00067  Score=62.99  Aligned_cols=97  Identities=11%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      .+|+|||+.|+||..+.+.+.+.|++++ .+|++.  +        .+.++...  +.|++++++|+....+++++....
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~-~~~~~~--~--------~~~~~~~~--~aDvVilavp~~~~~~vl~~l~~~   88 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRED--W--------AVAESILA--NADVVIVSVPINLTLETIERLKPY   88 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTC--G--------GGHHHHHT--TCSEEEECSCGGGHHHHHHHHGGG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEE-EEECCc--c--------cCHHHHhc--CCCEEEEeCCHHHHHHHHHHHHhh
Confidence            4688999339999999999999999876 778765  2        24666665  789999999999999999887542


Q ss_pred             -CCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          123 -ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       123 -Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                       .-..+|+..++......+++.+.    .+.++++
T Consensus        89 l~~~~iv~~~~svk~~~~~~~~~~----~~~~~v~  119 (298)
T 2pv7_A           89 LTENMLLADLTSVKREPLAKMLEV----HTGAVLG  119 (298)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHH----CSSEEEE
T ss_pred             cCCCcEEEECCCCCcHHHHHHHHh----cCCCEEe
Confidence             22334544556654444444332    2356664

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.36  E-value=0.00042  Score=65.99  Aligned_cols=86  Identities=16%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc---------ee-------------cCcccccCHHHhhhcCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EH-------------LGLPVFNTVAEAKAETK   99 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~---------~i-------------~G~p~y~sl~dl~~~~~   99 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++..+......         .+             .++++..+.+++..  +
T Consensus         2 ikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~--~   78 (337)
T 1cf2_P            2 KAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--E   78 (337)
T ss_dssp             EEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--T
T ss_pred             eEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc--C
Confidence            68999999 99999999998874 788886655432100         01             01222234556655  7


Q ss_pred             CCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101          100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       100 iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +|+++.++|...+.+.+..++++|++. +..++
T Consensus        79 vDvV~~atp~~~~~~~a~~~l~aG~~V-Id~sp  110 (337)
T 1cf2_P           79 ADIVIDCTPEGIGAKNLKMYKEKGIKA-IFQGG  110 (337)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHHTCCE-EECTT
T ss_pred             CCEEEECCCchhhHHHHHHHHHcCCEE-EEecC
Confidence            999999999999999999999999884 44343

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.36  E-value=0.00049  Score=62.70  Aligned_cols=95  Identities=11%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcc--cccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      +|+|||+ |+||+.+.+.+.+.|++++ .+|++... +.  -.|.+  .+.+++++ .  +.|++++++|+..+.+++++
T Consensus         2 ~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~D~vi~av~~~~~~~~~~~   76 (279)
T 2f1k_A            2 KIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLL-Q--TAKIIFLCTPIQLILPTLEK   76 (279)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGG-T--TCSEEEECSCHHHHHHHHHH
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHhCCCCccccCCHHHh-C--CCCEEEEECCHHHHHHHHHH
Confidence            6889998 9999999999999999866 67775410 01  12443  46678887 5  79999999999999998887


Q ss_pred             HHHc-CCcEEEEecCCCChhHHHHHH
Q 020101          119 AMEA-ELDLVVCITEGIPQHDMVRVK  143 (331)
Q Consensus       119 ~~~~-Gi~~ivi~t~G~~e~~~~~l~  143 (331)
                      +... .-..+++-..+.+....+++.
T Consensus        77 l~~~~~~~~~vv~~~~~~~~~~~~~~  102 (279)
T 2f1k_A           77 LIPHLSPTAIVTDVASVKTAIAEPAS  102 (279)
T ss_dssp             HGGGSCTTCEEEECCSCCHHHHHHHH
T ss_pred             HHhhCCCCCEEEECCCCcHHHHHHHH
Confidence            7543 223344434555544444443

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.35  E-value=0.00017  Score=64.93  Aligned_cols=93  Identities=19%  Similarity=0.241  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC----eEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~----~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      .+|+|||+ |+||+.+.+.|.+.|+    +++ .+|++... +   +..|+..+.+.+++.+  +.|++++++|++...+
T Consensus         3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~-~~~r~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVilav~~~~~~~   78 (247)
T 3gt0_A            3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQII-CSDLNTANLKNASEKYGLTTTTDNNEVAK--NADILILSIKPDLYAS   78 (247)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCHHHHHHHHHHHCCEECSCHHHHHH--HCSEEEECSCTTTHHH
T ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCHHHHHHHHHHhCCEEeCChHHHHH--hCCEEEEEeCHHHHHH
Confidence            46889998 9999999999999987    665 77776411 1   1248888889988877  6899999999999999


Q ss_pred             HHHHHHHc-CCc-EEEEecCCCChhHH
Q 020101          115 AILEAMEA-ELD-LVVCITEGIPQHDM  139 (331)
Q Consensus       115 ~v~~~~~~-Gi~-~ivi~t~G~~e~~~  139 (331)
                      +++++... .-. .++-.+.|++.+..
T Consensus        79 v~~~l~~~l~~~~~vvs~~~gi~~~~l  105 (247)
T 3gt0_A           79 IINEIKEIIKNDAIIVTIAAGKSIEST  105 (247)
T ss_dssp             HC---CCSSCTTCEEEECSCCSCHHHH
T ss_pred             HHHHHHhhcCCCCEEEEecCCCCHHHH
Confidence            98776542 122 33436788875543

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.34  E-value=0.00051  Score=68.57  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=73.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee-----cCcc--cccCHHHhhhc-CCCCEEEEecChh-h
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-----LGLP--VFNTVAEAKAE-TKANASAIYVPPP-F  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i-----~G~p--~y~sl~dl~~~-~~iDlaii~vp~~-~  111 (331)
                      ..+|+|||+ |+||..+.++|.+.|++++ ..|++... +..     .|..  .+.+++|+.+. .++|++++++|+. .
T Consensus         4 ~~kIgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~   81 (484)
T 4gwg_A            4 QADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQA   81 (484)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred             CCEEEEECh-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence            456899999 9999999999999999876 67776521 011     1322  35789888762 2489999999995 6


Q ss_pred             HHHHHHHHHHcC-C-cEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101          112 AAAAILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       112 ~~~~v~~~~~~G-i-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP  157 (331)
                      +.++++++...= - ..++..+++. ..+..++.+.+ ++.|+.+++.
T Consensus        82 v~~vl~~l~~~L~~g~iIId~st~~-~~~t~~~~~~l-~~~Gi~fvd~  127 (484)
T 4gwg_A           82 VDDFIEKLVPLLDTGDIIIDGGNSE-YRDTTRRCRDL-KAKGILFVGS  127 (484)
T ss_dssp             HHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHHHH-HHTTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCC-chHHHHHHHHH-HhhccccccC
Confidence            667777665531 2 2333334443 34444444444 5678887753

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=97.32  E-value=0.0027  Score=61.78  Aligned_cols=122  Identities=15%  Similarity=0.154  Sum_probs=87.0

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-CCCcHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI-GGTAEEDAAALI  257 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~-~g~~~~~~~~f~  257 (331)
                      ..|+|++++-+|+++...++.....|.-...++-+|+.++ .-.+.+.++.+..||++++|++-+=+ +=+-..-++..+
T Consensus       262 l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~-~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii  340 (395)
T 2fp4_B          262 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVK-ESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGIT  340 (395)
T ss_dssp             CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCC-HHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHH
T ss_pred             cCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCC-HHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHH
Confidence            4699999999999999999999999988889999998762 34566778889999999999985422 211122334455


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEe--CCHhHHHHHHH
Q 020101          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVV--ESPAKIGAAML  321 (331)
Q Consensus       258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v--~~~~el~~~~~  321 (331)
                      ++++   .+||||+-..|.                    +.+.-.+.|+++|+-..  +|++|-...+.
T Consensus       341 ~a~~~~~~~~Pivvrl~G~--------------------n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v  389 (395)
T 2fp4_B          341 KACRELELKVPLVVRLEGT--------------------NVHEAQNILTNSGLPITSAVDLEDAAKKAV  389 (395)
T ss_dssp             HHHHHHTCCSCEEEEEEET--------------------THHHHHHHHHHTCSCCEECSSHHHHHHHHH
T ss_pred             HHHHhcCCCCeEEEEcCCC--------------------CHHHHHHHHHHCCCceEeCCCHHHHHHHHH
Confidence            5554   689999966553                    23345678888996555  66655554443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.31  E-value=0.00065  Score=67.59  Aligned_cols=110  Identities=12%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee-------cCcccccCHHHhhhc-CCCCEEEEecChh-hH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LGLPVFNTVAEAKAE-TKANASAIYVPPP-FA  112 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i-------~G~p~y~sl~dl~~~-~~iDlaii~vp~~-~~  112 (331)
                      .+|+|||+ |.||+.+..+|.+.|+++. .+|+.... +.+       .|+..+.+++++.+. .++|++++++|+. .+
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v   80 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV   80 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHH
Confidence            45889999 9999999999999999865 77775410 011       356677889887631 2689999999995 67


Q ss_pred             HHHHHHHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          113 AAAILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       113 ~~~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      .++++++... .- +.++..+.+.. .+..++.+.+ ++.|+.+++
T Consensus        81 ~~vl~~l~~~l~~g~iII~~s~~~~-~~~~~l~~~l-~~~g~~~v~  124 (482)
T 2pgd_A           81 DNFIEKLVPLLDIGDIIIDGGNSEY-RDTMRRCRDL-KDKGILFVG  124 (482)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCCCH-HHHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCCH-HHHHHHHHHH-HHcCCeEeC
Confidence            7777765542 21 34444555654 3333444444 455777653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00061  Score=65.05  Aligned_cols=105  Identities=14%  Similarity=0.171  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH-HH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI-LE  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v-~~  118 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ ..||..  +...+...+.+++++.+  +.|++++++|. +....++ ++
T Consensus       170 ~gktiGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~sl~ell~--~aDvVil~vP~t~~t~~li~~~  243 (340)
T 4dgs_A          170 KGKRIGVLGL-GQIGRALASRAEAFGMSVR-YWNRST--LSGVDWIAHQSPVDLAR--DSDVLAVCVAASAATQNIVDAS  243 (340)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSC--CTTSCCEECSSHHHHHH--TCSEEEECC----------CHH
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCc--ccccCceecCCHHHHHh--cCCEEEEeCCCCHHHHHHhhHH
Confidence            4567899999 9999999999999999977 778765  23345556779999988  79999999994 3344444 22


Q ss_pred             HH-HcCCc-EEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          119 AM-EAELD-LVVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       119 ~~-~~Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      .. ..+-. .+|+.+.|-. -+.+.|.+.. ++..+.
T Consensus       244 ~l~~mk~gailIN~aRG~v-vde~aL~~aL-~~g~i~  278 (340)
T 4dgs_A          244 LLQALGPEGIVVNVARGNV-VDEDALIEAL-KSGTIA  278 (340)
T ss_dssp             HHHHTTTTCEEEECSCC----------------CCSS
T ss_pred             HHhcCCCCCEEEECCCCcc-cCHHHHHHHH-HcCCce
Confidence            22 22322 3455666632 3334455544 444443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.25  E-value=0.0006  Score=67.84  Aligned_cols=110  Identities=22%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecC-------cccccCHHHhhhc-CCCCEEEEecChh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLG-------LPVFNTVAEAKAE-TKANASAIYVPPP  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G-------~p~y~sl~dl~~~-~~iDlaii~vp~~  110 (331)
                      ++|+|||+ |.||+.+..+|.+.|+++. .+|+.... +.   ..|       +..+.+++++.+. .++|++++++|+.
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~   79 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG   79 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCCh
Confidence            36889999 9999999999999999865 77765310 01   124       5667788887652 1489999999995


Q ss_pred             -hHHHHHHHHHHc-CC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          111 -FAAAAILEAMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       111 -~~~~~v~~~~~~-Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                       .+.++++++... .- +.++..+.|.. .+..++.+.+ ++.|+.+++
T Consensus        80 ~~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l-~~~g~~~v~  126 (478)
T 1pgj_A           80 AATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQL-EAAGLRFLG  126 (478)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHH-HTTTCEEEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHH-HHCCCeEEE
Confidence             677777665442 22 23344455553 3334455555 456776653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.23  E-value=0.00049  Score=65.96  Aligned_cols=93  Identities=15%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee----------c------CcccccCHHHhhhcCCCCEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------L------GLPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i----------~------G~p~y~sl~dl~~~~~iDla  103 (331)
                      +..+|+|||+ |.||..+...|.+.|+++. .++..... +.+          .      ++....++++..+  +.|++
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~--~aDvV  103 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE--GVTDI  103 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT--TCCEE
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh--cCCEE
Confidence            3467899999 9999999999999998866 55554210 000          1      1334567877766  78999


Q ss_pred             EEecChhhHHHHHHHHHHc-C-CcEEEEecCCCChh
Q 020101          104 AIYVPPPFAAAAILEAMEA-E-LDLVVCITEGIPQH  137 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~-G-i~~ivi~t~G~~e~  137 (331)
                      ++++|+....+++++.... . -..++..+.|+..+
T Consensus       104 ilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          104 LIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             EECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             EECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence            9999999988888877643 1 13456677888654

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.21  E-value=0.00058  Score=65.63  Aligned_cols=91  Identities=9%  Similarity=-0.061  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCceecC----------------ccccc-CHHHhhhcCCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLG----------------LPVFN-TVAEAKAETKAN  101 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~~i~G----------------~p~y~-sl~dl~~~~~iD  101 (331)
                      .+.++|+|+||||-.|..+++.|.++. ++++.....+..|+.+..                ..+.. +.+++ .  ++|
T Consensus         5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~-~--~vD   81 (359)
T 4dpl_A            5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLM-D--DVD   81 (359)
T ss_dssp             -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGC-T--TCC
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHh-c--CCC
Confidence            456899999999999999999888764 577766666665554321                11111 12222 2  799


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       102 laii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +++.++|.....+.+..+.++|++. |..++-|
T Consensus        82 vvf~a~p~~~s~~~a~~~~~~G~~v-IDlSa~~  113 (359)
T 4dpl_A           82 IIFSPLPQGAAGPVEEQFAKEGFPV-ISNSPDH  113 (359)
T ss_dssp             EEEECCCTTTHHHHHHHHHHTTCEE-EECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEE-EEcCCCc
Confidence            9999999999999999999999987 5566654

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.21  E-value=0.00058  Score=65.63  Aligned_cols=91  Identities=9%  Similarity=-0.061  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCceecC----------------ccccc-CHHHhhhcCCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLG----------------LPVFN-TVAEAKAETKAN  101 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~~i~G----------------~p~y~-sl~dl~~~~~iD  101 (331)
                      .+.++|+|+||||-.|..+++.|.++. ++++.....+..|+.+..                ..+.. +.+++ .  ++|
T Consensus         5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~-~--~vD   81 (359)
T 4dpk_A            5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLM-D--DVD   81 (359)
T ss_dssp             -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGC-T--TCC
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHh-c--CCC
Confidence            456899999999999999999888764 577766666665554321                11111 12222 2  799


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       102 laii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +++.++|.....+.+..+.++|++. |..++-|
T Consensus        82 vvf~a~p~~~s~~~a~~~~~~G~~v-IDlSa~~  113 (359)
T 4dpk_A           82 IIFSPLPQGAAGPVEEQFAKEGFPV-ISNSPDH  113 (359)
T ss_dssp             EEEECCCTTTHHHHHHHHHHTTCEE-EECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEE-EEcCCCc
Confidence            9999999999999999999999987 5566654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.18  E-value=0.00031  Score=63.41  Aligned_cols=90  Identities=16%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC---------------ce---ecCcccccCHHHhhhcCCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---------------TE---HLGLPVFNTVAEAKAETKAN  101 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g---------------~~---i~G~p~y~sl~dl~~~~~iD  101 (331)
                      ....+|+|||+ |+||+.+.+.|.+.|++++ ..|++...               .+   ..|...+.+++++.+  +.|
T Consensus        17 ~~~~kIgiIG~-G~mG~alA~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aD   92 (245)
T 3dtt_A           17 FQGMKIAVLGT-GTVGRTMAGALADLGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA--GAE   92 (245)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH--HCS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh--cCC
Confidence            44677899998 9999999999999999866 55654310               00   123445567888776  689


Q ss_pred             EEEEecChhhHHHHHHHH-HH-cCCcEEEEecCC
Q 020101          102 ASAIYVPPPFAAAAILEA-ME-AELDLVVCITEG  133 (331)
Q Consensus       102 laii~vp~~~~~~~v~~~-~~-~Gi~~ivi~t~G  133 (331)
                      ++++++|+....+++.+. .. ..=+.++..+.|
T Consensus        93 vVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~  126 (245)
T 3dtt_A           93 LVVNATEGASSIAALTAAGAENLAGKILVDIANP  126 (245)
T ss_dssp             EEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred             EEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence            999999999998888765 22 122345556643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.16  E-value=0.00057  Score=65.65  Aligned_cols=90  Identities=16%  Similarity=0.112  Sum_probs=63.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------Cc---c-cccCHHHhhhcCCCCEEEEecC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------GL---P-VFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G~---p-~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +.++|+|+||+|..|+.+++.|.+. .+++++..++...|..+.       |.   . .+.+ ++..+  ++|+++.++|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~--~vDvVf~atp   91 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFS--TVDAVFCCLP   91 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGG--GCSEEEECCC
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhc--CCCEEEEcCC
Confidence            4589999999999999999999886 468886666554332221       11   0 0111 23222  6899999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      ...+.+.+..+ ++|++. |-.++-|.
T Consensus        92 ~~~s~~~a~~~-~aG~~V-Id~sa~~R  116 (359)
T 1xyg_A           92 HGTTQEIIKEL-PTALKI-VDLSADFR  116 (359)
T ss_dssp             TTTHHHHHHTS-CTTCEE-EECSSTTT
T ss_pred             chhHHHHHHHH-hCCCEE-EECCcccc
Confidence            99999999999 999974 55666563

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.16  E-value=0.0012  Score=63.90  Aligned_cols=115  Identities=13%  Similarity=0.129  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHH-HHHHcC---CeEEEEeCCCCCCceec---Cc--cccc--CHHHhhhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTE-QAIEYG---TKMVGGVTPKKGGTEHL---GL--PVFN--TVAEAKAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~-~l~~~g---~~iv~~VnP~~~g~~i~---G~--p~y~--sl~dl~~~~~iDlaii~vp  108 (331)
                      |..++|+||||||-.|+.+++ .|.++.   .+++ .+..+..|+.+.   |.  .+..  +.+++ .  ++|+++.++|
T Consensus         2 ~~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~-~~ss~~aG~~~~~~~~~~~~v~~~~~~~~~-~--~vDvvf~a~~   77 (377)
T 3uw3_A            2 PGSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPV-FFSTSNAGGKAPSFAKNETTLKDATSIDDL-K--KCDVIITCQG   77 (377)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE-EEESSCTTSBCCTTCCSCCBCEETTCHHHH-H--TCSEEEECSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEE-EEechhcCCCHHHcCCCceEEEeCCChhHh-c--CCCEEEECCC
Confidence            345789999999999999998 777766   3565 333334444432   21  1211  23333 3  6999999999


Q ss_pred             hhhHHHHHHHHHHcCCc-EEEEecCCCChh-H---------HHHHHHHHhccCCc-EEEccCCC
Q 020101          109 PPFAAAAILEAMEAELD-LVVCITEGIPQH-D---------MVRVKAALNNQSKT-RLVGPNCP  160 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~-~ivi~t~G~~e~-~---------~~~l~~~a~~~~gi-~viGPnc~  160 (331)
                      .....+.+..+.++|++ .+|-.++.|.-+ +         .+++.. + ++.++ .|..|||.
T Consensus        78 ~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~-~-~~~~i~~Ianp~C~  139 (377)
T 3uw3_A           78 GDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKD-A-LVNGTKNFIGGNCT  139 (377)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHH-H-HHTTCCEEEECCHH
T ss_pred             hHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhh-h-hhcCCcEEEcCCHH
Confidence            99999999999999985 444445444321 1         123322 2 23565 47799984

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.15  E-value=0.0015  Score=64.32  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-----------------------cCcccccCHHHhhhc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----------------------LGLPVFNTVAEAKAE   97 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-----------------------~G~p~y~sl~dl~~~   97 (331)
                      +.++|+|||+ |.+|...+..|.+ |++++ .+|.+.  +.+                       .++....++++... 
T Consensus        35 ~~mkIaVIGl-G~mG~~lA~~La~-G~~V~-~~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~-  108 (432)
T 3pid_A           35 EFMKITISGT-GYVGLSNGVLIAQ-NHEVV-ALDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR-  108 (432)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHT-TSEEE-EECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT-
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHc-CCeEE-EEecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh-
Confidence            3457999999 9999988888887 99877 666543  111                       12444456777666 


Q ss_pred             CCCCEEEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCC
Q 020101           98 TKANASAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP  160 (331)
Q Consensus        98 ~~iDlaii~vp~~-----------~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~  160 (331)
                       +.|++++++|..           .+.++++......-..+|+..+..+....+++.+.. .+.++.. .|..+
T Consensus       109 -~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~~~l-~~~~v~~-sPe~~  179 (432)
T 3pid_A          109 -NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKERL-GIDNVIF-SPEFL  179 (432)
T ss_dssp             -TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHHHHH-TCCCEEE-CCCCC
T ss_pred             -CCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHHHHH-hhccEee-cCccC
Confidence             789999999986           455565555543334455666667666666666665 4555433 56654

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=97.14  E-value=0.0075  Score=58.42  Aligned_cols=123  Identities=14%  Similarity=0.202  Sum_probs=86.6

Q ss_pred             CCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEcc-CCCcHHHHHHHH
Q 020101          179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI-GGTAEEDAAALI  257 (331)
Q Consensus       179 ~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~-~g~~~~~~~~f~  257 (331)
                      ..|+|++++-+|+++...++.....|.-...|+-+|+.+. .-.+.+.++.+..||++++|++.+=+ +=+-..-++..+
T Consensus       255 l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a~-~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~gii  333 (388)
T 2nu8_B          255 LDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGAT-KERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGII  333 (388)
T ss_dssp             CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCC-HHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCCC-HHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHHHH
Confidence            4799999999999999999999999888888999998762 34556677788899999999997522 111012233344


Q ss_pred             HHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEe--CCHhHHHHHHHH
Q 020101          258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVV--ESPAKIGAAMLE  322 (331)
Q Consensus       258 ~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v--~~~~el~~~~~a  322 (331)
                      ++++   .+||||+-..|.                    +.+.-...|++.|+-..  +|+++-...+.+
T Consensus       334 ~a~~~~~~~~pivvrl~G~--------------------n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~  383 (388)
T 2nu8_B          334 GAVAEVGVNVPVVVRLEGN--------------------NAELGAKKLADSGLNIIAAKGLTDAAQQVVA  383 (388)
T ss_dssp             HHHHHHTCCSCEEEEEEST--------------------THHHHHHHHHTTCSSEEECSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCeEEEEeCCC--------------------CHHHHHHHHHHCCCceecCCCHHHHHHHHHH
Confidence            4443   689999955553                    23445678888896655  666665554443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.10  E-value=0.0019  Score=58.92  Aligned_cols=101  Identities=14%  Similarity=0.113  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCC-ce--ecCcc--cccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGG-TE--HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g-~~--i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .+|+|||+ |+||..+.+.+.+.|+  +++ .+|++... +.  -.|..  .+.+++++... +.|++++++|+....++
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~aDvVilavp~~~~~~v   78 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAVDLGIIDEGTTSIAKVEDF-SPDFVMLSSPVRTFREI   78 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHTTSCSEEESCGGGGGGT-CCSEEEECSCHHHHHHH
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEE-EEeCCHHHHHHHHHCCCcccccCCHHHHhcC-CCCEEEEcCCHHHHHHH
Confidence            36889998 9999999999998888  766 77876410 00  13443  34567665431 48999999999999998


Q ss_pred             HHHHHHc-CCcEEEEecCCCChhHHHHHHHHH
Q 020101          116 ILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus       116 v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                      ++++... .-+.+++...+......+.+.+..
T Consensus        79 ~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l  110 (281)
T 2g5c_A           79 AKKLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (281)
T ss_dssp             HHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             HHHHHhhCCCCcEEEECCCCcHHHHHHHHHhc
Confidence            8876542 333344444455444444555544

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=97.10  E-value=0.00046  Score=65.80  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC---------cee-------------------cC--ccccc--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TEH-------------------LG--LPVFN--   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g---------~~i-------------------~G--~p~y~--   89 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++..+|..+-         ++.                   .|  ++++.  
T Consensus         4 ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~   82 (337)
T 3e5r_O            4 IKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR   82 (337)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred             eEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence            68999999 99999999998876 78898776661000         001                   11  12343  


Q ss_pred             CHHHhh-hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           90 TVAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        90 sl~dl~-~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +.++++ .+.++|+++.++|...+.+.+..++++|+|.+++
T Consensus        83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVI  123 (337)
T 3e5r_O           83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI  123 (337)
T ss_dssp             CGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred             ChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEE
Confidence            566664 1127999999999999999999999999987665

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.09  E-value=0.001  Score=64.42  Aligned_cols=91  Identities=12%  Similarity=0.007  Sum_probs=64.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEe-CCCCCCceecCc---------------ccccCHHH--hhhcCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGGTEHLGL---------------PVFNTVAE--AKAETKAN  101 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~V-nP~~~g~~i~G~---------------p~y~sl~d--l~~~~~iD  101 (331)
                      +.++|+|+||||-.|..+++.|.++. +++.... ..+..|+.+..+               ..+.++++  ..+  ++|
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~--~~D   95 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFL--ECD   95 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGG--GCS
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcc--cCC
Confidence            45889999999999999999888875 5676444 565555543210               01111111  122  689


Q ss_pred             EEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          102 ASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       102 laii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +++.++|.....+.+.++.++|++. |-.++-|
T Consensus        96 vvf~alp~~~s~~~~~~~~~~G~~V-IDlSa~f  127 (381)
T 3hsk_A           96 VVFSGLDADVAGDIEKSFVEAGLAV-VSNAKNY  127 (381)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCEE-EECCSTT
T ss_pred             EEEECCChhHHHHHHHHHHhCCCEE-EEcCCcc
Confidence            9999999999999999999999986 5567655

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=97.09  E-value=0.002  Score=61.76  Aligned_cols=111  Identities=20%  Similarity=0.160  Sum_probs=77.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHH---HHHHc--CCeEEEEeCCCCCCcee--------cCcccccCHHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTE---QAIEY--GTKMVGGVTPKKGGTEH--------LGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~---~l~~~--g~~iv~~VnP~~~g~~i--------~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ...+++|.|- |.+|+...|   .+.++  ++++++.+ +...|++.        .|+|++.|++++.+. .+|++++.+
T Consensus        21 ~~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~~~gipv~~d~~~al~~-~~d~lvig~   97 (350)
T 2g0t_A           21 PGTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLIIGV   97 (350)
T ss_dssp             TTEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEEECC
T ss_pred             cCCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCCCCCceeeCCHHHHHhc-CCCEEEEEe
Confidence            3567778877 888876665   34555  68999889 88766542        359999999999864 699999986


Q ss_pred             Ch------hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101          108 PP------PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       108 p~------~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP  157 (331)
                      .+      +...+.+++|+++|... +..-.-+ ..+..++.++| +++|..+++=
T Consensus        98 a~~gg~l~~~~~~~I~~Al~~G~nV-vsglh~~-l~~~pel~~~A-~~~Gv~i~dv  150 (350)
T 2g0t_A           98 SNPGGYLEEQIATLVKKALSLGMDV-ISGLHFK-ISQQTEFLKIA-HENGTRIIDI  150 (350)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHTTCEE-EECCCC---CCHHHHHHHH-HHHTCCEEES
T ss_pred             cCCCCCCCHHHHHHHHHHHHcCCcE-EeCChhh-hhCCHHHHHHH-HHCCCEEEEe
Confidence            22      35568899999999986 4322222 33444566766 7888887753

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.09  E-value=0.0006  Score=63.66  Aligned_cols=105  Identities=11%  Similarity=0.085  Sum_probs=67.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH-HH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI-LE  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v-~~  118 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ ++||..  +.........+++++.+  +.|++++++|. +....++ ++
T Consensus       121 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~  194 (290)
T 3gvx_A          121 YGKALGILGY-GGIGRRVAHLAKAFGMRVI-AYTRSS--VDQNVDVISESPADLFR--QSDFVLIAIPLTDKTRGMVNSR  194 (290)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSSC--CCTTCSEECSSHHHHHH--HCSEEEECCCCCTTTTTCBSHH
T ss_pred             ecchheeecc-CchhHHHHHHHHhhCcEEE-EEeccc--cccccccccCChHHHhh--ccCeEEEEeeccccchhhhhHH
Confidence            3567899999 9999999999999999987 778765  33333455668999987  68999999994 3333333 22


Q ss_pred             HHH-cCCc-EEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          119 AME-AELD-LVVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       119 ~~~-~Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      ..+ .+-. .+++.+.|-. .+.++|.+.. ++.++.
T Consensus       195 ~l~~mk~gailIN~aRG~~-vd~~aL~~aL-~~g~i~  229 (290)
T 3gvx_A          195 LLANARKNLTIVNVARADV-VSKPDMIGFL-KERSDV  229 (290)
T ss_dssp             HHTTCCTTCEEEECSCGGG-BCHHHHHHHH-HHCTTC
T ss_pred             HHhhhhcCceEEEeehhcc-cCCcchhhhh-hhccce
Confidence            222 2222 3444554532 2333444444 444443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.09  E-value=0.0008  Score=61.81  Aligned_cols=88  Identities=14%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      .+|+|||++|+||+.+.+.|.+.|++++ .+|++... +.  -.|+.+. +..++.+  +.|++++++|+..+.++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~aDvVi~av~~~~~~~v~~~l   87 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIEIAPEGRDRLQGMGIPLT-DGDGWID--EADVVVLALPDNIIEKVAEDI   87 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEE-EECCSHHHHHHHHHTTCCCC-CSSGGGG--TCSEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHhcCCCcC-CHHHHhc--CCCEEEEcCCchHHHHHHHHH
Confidence            5799999999999999999999999876 77775410 01  1354443 5556655  789999999999988888876


Q ss_pred             HHc-CCc-EEEEecCCC
Q 020101          120 MEA-ELD-LVVCITEGI  134 (331)
Q Consensus       120 ~~~-Gi~-~ivi~t~G~  134 (331)
                      ... .-. .++..+.|.
T Consensus        88 ~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           88 VPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGGSCTTCEEEESCSHH
T ss_pred             HHhCCCCCEEEECCCCc
Confidence            542 222 333355555

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.08  E-value=0.00056  Score=64.90  Aligned_cols=87  Identities=22%  Similarity=0.253  Sum_probs=63.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--c--eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--T--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL-  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~-  117 (331)
                      .+|+|||+ |++|+.+.+.|.+.|++++ ..+++...  +  .-.|+.++ +++++..  +.|++++++|+....++++ 
T Consensus        17 ~~I~IIG~-G~mG~alA~~L~~~G~~V~-~~~~~~~~~~~~a~~~G~~~~-~~~e~~~--~aDvVilavp~~~~~~v~~~   91 (338)
T 1np3_A           17 KKVAIIGY-GSQGHAHACNLKDSGVDVT-VGLRSGSATVAKAEAHGLKVA-DVKTAVA--AADVVMILTPDEFQGRLYKE   91 (338)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEE-EECCTTCHHHHHHHHTTCEEE-CHHHHHH--TCSEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHHHCCCEEc-cHHHHHh--cCCEEEEeCCcHHHHHHHHH
Confidence            46888999 9999999999999999876 66665421  0  12466655 7888776  7999999999999988887 


Q ss_pred             HHHHc-CCcEEEEecCCC
Q 020101          118 EAMEA-ELDLVVCITEGI  134 (331)
Q Consensus       118 ~~~~~-Gi~~ivi~t~G~  134 (331)
                      +.... .-..+++...|+
T Consensus        92 ~i~~~l~~~~ivi~~~gv  109 (338)
T 1np3_A           92 EIEPNLKKGATLAFAHGF  109 (338)
T ss_dssp             HTGGGCCTTCEEEESCCH
T ss_pred             HHHhhCCCCCEEEEcCCc
Confidence            55432 223445556665

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.04  E-value=0.00041  Score=66.04  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCC-CCCC--------ce-----------------ecC--cccc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP-KKGG--------TE-----------------HLG--LPVF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP-~~~g--------~~-----------------i~G--~p~y--~sl   91 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++..+| ...+        ++                 +.|  ++++  .+.
T Consensus         4 ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~   82 (335)
T 1u8f_O            4 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   82 (335)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence            68999998 99999999988775 6899977665 1100        00                 111  1234  256


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++++- +.++|+++.++|...+.+.+..++++|++.|++ +.
T Consensus        83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~i-Sa  123 (335)
T 1u8f_O           83 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII-SA  123 (335)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE-SS
T ss_pred             HHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEe-cc
Confidence            77641 237999999999999999999999999998664 54

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.03  E-value=0.0025  Score=61.46  Aligned_cols=112  Identities=14%  Similarity=0.088  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCCcHHHH-HHHHcCC---eEEEEeCCCCCCceec---Cc-cccc---CHHHhhhcCCCCEEEEecChhh
Q 020101           43 TRVICQGITGKNGTFHTE-QAIEYGT---KMVGGVTPKKGGTEHL---GL-PVFN---TVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~-~l~~~g~---~iv~~VnP~~~g~~i~---G~-p~y~---sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++|+||||||-.|+.+++ .|.++.|   +++..-..+ .|+.+.   |. ..+.   +.+++ +  ++|+++.++|...
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~~   76 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIESL-K--QLDAVITCQGGSY   76 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHHH-T--TCSEEEECSCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhHh-c--cCCEEEECCChHH
Confidence            478999999999999998 7777663   566333333 454432   21 1122   22333 3  7999999999999


Q ss_pred             HHHHHHHHHHcCCc-EEEEecCCCChh-H---------HHHHHHHHhccCCc-EEEccCCC
Q 020101          112 AAAAILEAMEAELD-LVVCITEGIPQH-D---------MVRVKAALNNQSKT-RLVGPNCP  160 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~-~ivi~t~G~~e~-~---------~~~l~~~a~~~~gi-~viGPnc~  160 (331)
                      ..+.+..+.++|++ .+|-.++.|.-+ +         .+++.. + ++.++ .|..|||.
T Consensus        77 s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~-~-~~~~i~~Ianp~C~  135 (370)
T 3pzr_A           77 TEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILH-G-IHHGTKTFVGGNCT  135 (370)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHH-H-HHTTCCEEEECCHH
T ss_pred             HHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhh-h-hhcCCcEEEcCChH
Confidence            99999999999986 434344444211 1         122322 2 23565 47799984

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.02  E-value=0.00085  Score=58.48  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---cC-------cccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG-------LPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---~G-------~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +|+|+|++|++|+.+.+.|.+.|++++ .++++... +..   .+       +. +.+++++.+  +.|++++++|+..+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~D~Vi~~~~~~~~   77 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIV-VGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAE--ACDIAVLTIPWEHA   77 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEE-EEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHH--HCSEEEECSCHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHh--cCCEEEEeCChhhH
Confidence            688999669999999999998899876 56654310 111   12       33 456777666  68999999999988


Q ss_pred             HHHHHHHHHc-CCcEEEEecCCCC
Q 020101          113 AAAILEAMEA-ELDLVVCITEGIP  135 (331)
Q Consensus       113 ~~~v~~~~~~-Gi~~ivi~t~G~~  135 (331)
                      .++++++... .-+.++..+.|++
T Consensus        78 ~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           78 IDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             HHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCcC
Confidence            8887765431 2245566777876

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.01  E-value=0.00061  Score=63.49  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=60.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC--CCCC-cee--cC-----------ccccc--CHHHhhhcCCCCEEEE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP--KKGG-TEH--LG-----------LPVFN--TVAEAKAETKANASAI  105 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP--~~~g-~~i--~G-----------~p~y~--sl~dl~~~~~iDlaii  105 (331)
                      +|+|||+ |+||..+...|.+.|++++ .+++  +... +.+  .|           +.+..  ++++..+  +.|++++
T Consensus         2 ~I~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~D~vi~   77 (335)
T 1txg_A            2 IVSILGA-GAMGSALSVPLVDNGNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE--NAEVVLL   77 (335)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT--TCSEEEE
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCeEE-EEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHh--cCCEEEE
Confidence            6889999 9999999999998899876 6776  3210 001  12           13444  6666555  7899999


Q ss_pred             ecChhhHHHHHHHHHHcCC-cEEEEecCCC
Q 020101          106 YVPPPFAAAAILEAMEAEL-DLVVCITEGI  134 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~Gi-~~ivi~t~G~  134 (331)
                      ++|+..+.++++++...+- +.++.++.|+
T Consensus        78 ~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           78 GVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             CSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             cCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999999888877654221 2444556687

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.00  E-value=0.00034  Score=63.18  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      +|+|||+ |+||..+.+.|.+.| +++. .+|++... +.   ..|+..+.+++++.   +.|++++++|+..+.+++++
T Consensus         2 ~i~iiG~-G~mG~~~a~~l~~~g~~~v~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~---~~D~vi~~v~~~~~~~v~~~   76 (263)
T 1yqg_A            2 NVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGVETSATLPELH---SDDVLILAVKPQDMEAACKN   76 (263)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCCEEESSCCCCC---TTSEEEECSCHHHHHHHHTT
T ss_pred             EEEEECc-hHHHHHHHHHHHHCCCCeEE-EECCCHHHHHHHHHhcCCEEeCCHHHHh---cCCEEEEEeCchhHHHHHHH
Confidence            6889999 999999999998888 8765 77775410 11   13777777766654   48999999998888887765


Q ss_pred             HHHcCCcEEEEecCCCCh
Q 020101          119 AMEAELDLVVCITEGIPQ  136 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~~e  136 (331)
                      +.. .=+.++.++.|++.
T Consensus        77 l~~-~~~ivv~~~~g~~~   93 (263)
T 1yqg_A           77 IRT-NGALVLSVAAGLSV   93 (263)
T ss_dssp             CCC-TTCEEEECCTTCCH
T ss_pred             hcc-CCCEEEEecCCCCH
Confidence            543 32233445578875

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.99  E-value=0.0011  Score=63.45  Aligned_cols=89  Identities=13%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC------CeEEEEeCCCCCCceec-------C---ccccc-CHHHhhhcCCCCEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG------TKMVGGVTPKKGGTEHL-------G---LPVFN-TVAEAKAETKANASA  104 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g------~~iv~~VnP~~~g~~i~-------G---~p~y~-sl~dl~~~~~iDlai  104 (331)
                      .++|+|+||||..|+.+++.|.+.+      +++++....+..|+.+.       +   +.+.+ +.+++ .  ++|+++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~-~--~~DvVf   85 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVL-G--GHDAVF   85 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHH-T--TCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHh-c--CCCEEE
Confidence            4789999999999999999998866      47775554443333221       1   11111 22222 2  689999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      .++|.....+.+..+ ++|++. |..++-|.
T Consensus        86 ~alg~~~s~~~~~~~-~~G~~v-IDlSa~~R  114 (352)
T 2nqt_A           86 LALPHGHSAVLAQQL-SPETLI-IDCGADFR  114 (352)
T ss_dssp             ECCTTSCCHHHHHHS-CTTSEE-EECSSTTT
T ss_pred             ECCCCcchHHHHHHH-hCCCEE-EEECCCcc
Confidence            999999999999999 999875 55677664

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.94  E-value=0.0028  Score=60.98  Aligned_cols=83  Identities=11%  Similarity=-0.002  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCCCcHHHH-HHHHcCC---eEEEEeCCCCCCceec---C--ccccc--CHHHhhhcCCCCEEEEecChhh
Q 020101           43 TRVICQGITGKNGTFHTE-QAIEYGT---KMVGGVTPKKGGTEHL---G--LPVFN--TVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~-~l~~~g~---~iv~~VnP~~~g~~i~---G--~p~y~--sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++|+|+||+|..|+.+++ .+.+.++   +++ .+.....|+.+.   |  +.+..  +.+++ .  ++|+++.++|...
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~-~~~~~s~G~~v~~~~g~~i~~~~~~~~~~~-~--~~DvVf~a~g~~~   77 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDLEAL-K--ALDIIVTCQGGDY   77 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE-EEESSSTTSBCCGGGTCCCBCEETTCHHHH-H--TCSEEEECSCHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEE-EEEeCCCCCCccccCCCceEEEecCChHHh-c--CCCEEEECCCchh
Confidence            579999999999999999 5665554   344 333322344332   2  22222  23443 3  6999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEE
Q 020101          112 AAAAILEAMEAELDLVVC  129 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi  129 (331)
                      ..+.+..+.+.|++.+||
T Consensus        78 s~~~a~~~~~~G~k~vVI   95 (367)
T 1t4b_A           78 TNEIYPKLRESGWQGYWI   95 (367)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHCCCCEEEE
Confidence            999999999999975555

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.93  E-value=0.0017  Score=61.98  Aligned_cols=88  Identities=11%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEe-CCCCCCcee---cC-------------cccc-cCHHHhhhcCCCCEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGV-TPKKGGTEH---LG-------------LPVF-NTVAEAKAETKANAS  103 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~V-nP~~~g~~i---~G-------------~p~y-~sl~dl~~~~~iDla  103 (331)
                      ++|+|+||+|..|+.+++.|.+. ++++++.. ++...|+.+   .+             +.+. .+.+++.+ .++|++
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-EDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-TTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-CCCCEE
Confidence            78999999999999999988876 46787555 454433332   11             1111 12333322 268999


Q ss_pred             EEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101          104 AIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++++|...+.+.+..+.++|++. |-.+.
T Consensus        88 ~~atp~~~~~~~a~~~~~aG~~V-Id~s~  115 (354)
T 1ys4_A           88 FSALPSDLAKKFEPEFAKEGKLI-FSNAS  115 (354)
T ss_dssp             EECCCHHHHHHHHHHHHHTTCEE-EECCS
T ss_pred             EECCCchHHHHHHHHHHHCCCEE-EECCc
Confidence            99999999999999999999983 43343

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.87  E-value=0.0044  Score=54.42  Aligned_cols=76  Identities=20%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      ...+|+|||+ |+||..+.+.|.+.|++++ .+|++.  +             ..+  +.|++++++|+....+++++..
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~~V~-~~~~~~--~-------------~~~--~aD~vi~av~~~~~~~v~~~l~   78 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGHEVT-YYGSKD--Q-------------ATT--LGEIVIMAVPYPALAALAKQYA   78 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTC--C-------------CSS--CCSEEEECSCHHHHHHHHHHTH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCH--H-------------Hhc--cCCEEEEcCCcHHHHHHHHHHH
Confidence            4567899998 9999999999999999876 777765  2             223  6899999999988888887654


Q ss_pred             H-cCCcEEEEecCCCC
Q 020101          121 E-AELDLVVCITEGIP  135 (331)
Q Consensus       121 ~-~Gi~~ivi~t~G~~  135 (331)
                      . ..=+.++..+.|++
T Consensus        79 ~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           79 TQLKGKIVVDITNPLN   94 (209)
T ss_dssp             HHHTTSEEEECCCCBC
T ss_pred             HhcCCCEEEEECCCCC
Confidence            3 22234555777876

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.87  E-value=0.0032  Score=60.59  Aligned_cols=90  Identities=16%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCceec--Ccc-cccCHH-HhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL--GLP-VFNTVA-EAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i~--G~p-~y~sl~-dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      .++|+|+||||..|..+++.|.+.++   ++.....++..|+.+.  |.. .+..++ +..+  ++|+++.++|.....+
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~~s~~   79 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAK   79 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhc--CCCEEEECCChHhHHH
Confidence            47899999999999999998888654   4554455655555432  211 111111 1122  6999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCC
Q 020101          115 AILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .+..+.++|++. |-.++-|
T Consensus        80 ~a~~~~~~G~~v-IDlSa~~   98 (366)
T 3pwk_A           80 YAPYAVKAGVVV-VDNTSYF   98 (366)
T ss_dssp             HHHHHHHTTCEE-EECSSTT
T ss_pred             HHHHHHHCCCEE-EEcCCcc
Confidence            999999999975 5567665

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.87  E-value=0.002  Score=61.16  Aligned_cols=92  Identities=17%  Similarity=0.075  Sum_probs=63.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC---CeEEEEeCCCCCCcee--cCcc-cccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGTEH--LGLP-VFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g---~~iv~~VnP~~~g~~i--~G~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +.++|+|+||+|..|+.+++.|.+.+   +++++..+++..|+.+  .|.. .+.+++..+- .++|+++.++|.....+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~-~~vDvVf~a~g~~~s~~   80 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW-SQVHIALFSAGGELSAK   80 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCG-GGCSEEEECSCHHHHHH
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHh-cCCCEEEECCCchHHHH
Confidence            35789999999999999999988763   5677555555444322  2221 1122221111 16899999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCC
Q 020101          115 AILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .+..+.+.|++. |..++-|
T Consensus        81 ~a~~~~~~G~~v-Id~s~~~   99 (336)
T 2r00_A           81 WAPIAAEAGVVV-IDNTSHF   99 (336)
T ss_dssp             HHHHHHHTTCEE-EECSSTT
T ss_pred             HHHHHHHcCCEE-EEcCCcc
Confidence            999999999975 4455544

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.87  E-value=0.0021  Score=61.58  Aligned_cols=91  Identities=10%  Similarity=0.015  Sum_probs=65.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCceec--------Cccccc-CHHHhhhcCCCCEEEEecCh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHL--------GLPVFN-TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~~i~--------G~p~y~-sl~dl~~~~~iDlaii~vp~  109 (331)
                      ...++|+|+||||-.|+.+++.|.+.. ++++..-..+..|+.+.        .+++.+ +.+++..  ++|+++.++|.
T Consensus        11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~--~~Dvvf~alp~   88 (351)
T 1vkn_A           11 HHMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPA   88 (351)
T ss_dssp             -CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCST
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhc--CCCEEEECCCc
Confidence            457999999999999999999999874 56774444554555432        122221 3444433  58999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      ....+.+.++  +|++. |-.++-|.
T Consensus        89 ~~s~~~~~~~--~g~~V-IDlSsdfR  111 (351)
T 1vkn_A           89 GASYDLVREL--KGVKI-IDLGADFR  111 (351)
T ss_dssp             THHHHHHTTC--CSCEE-EESSSTTT
T ss_pred             HHHHHHHHHh--CCCEE-EECChhhh
Confidence            9999999988  78874 55676664

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.83  E-value=0.0011  Score=62.95  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=62.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee----------------cCcccccCHHHhhhcCCCCEEEEe
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i----------------~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      +|+|||+ |.||..+...|.+.|+++. .+|+.... +.+                .++....+++++.+  +.|+++++
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDvVila   92 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILFV   92 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSSEEEC
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc--CCCEEEEC
Confidence            7999999 9999999999988888866 66654310 001                02344567877665  68999999


Q ss_pred             cChhhHHHHHHH----HH---Hc-CCcEEEEecCCCChhH
Q 020101          107 VPPPFAAAAILE----AM---EA-ELDLVVCITEGIPQHD  138 (331)
Q Consensus       107 vp~~~~~~~v~~----~~---~~-Gi~~ivi~t~G~~e~~  138 (331)
                      +|+..+.+++++    +.   .. +. .++.++.|+..+.
T Consensus        93 v~~~~~~~v~~~~~~gl~~~l~~~~~-ivv~~~~gi~~~~  131 (366)
T 1evy_A           93 IPTQFLRGFFEKSGGNLIAYAKEKQV-PVLVCTKGIERST  131 (366)
T ss_dssp             CCHHHHHHHHHHHCHHHHHHHHHHTC-CEEECCCSCCTTT
T ss_pred             CChHHHHHHHHHhHHHHHHhcCccCC-EEEEECCcCCCcc
Confidence            999888888776    43   23 43 3455677876543

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.0028  Score=55.25  Aligned_cols=88  Identities=17%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee-cCcccc-------cCHHHhhhcCCCCEEEEecChh--
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLPVF-------NTVAEAKAETKANASAIYVPPP--  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i-~G~p~y-------~sl~dl~~~~~iDlaii~vp~~--  110 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|++++ .++.+... ... .++..+       .+++++.+  ++|++|.+..+.  
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~~   80 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVT-AVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGWN   80 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEE-EECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC---
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEE-EEEcCcccchhccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCCC
Confidence            46789999999999999999999999987 44333210 111 222222       23555555  799999876543  


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ----------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ----------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                ....+++.|.+.|++.+|.+++
T Consensus        81 ~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  112 (227)
T 3dhn_A           81 NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG  112 (227)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                      4566788888889988776665

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.82  E-value=0.0011  Score=62.57  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccc---cCHHHhhhcCCCCEEEEecCh-hhHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF---NTVAEAKAETKANASAIYVPP-PFAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y---~sl~dl~~~~~iDlaii~vp~-~~~~~~v  116 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ +.|+..  +...++..+   .+++++..  +.|++++++|. +....++
T Consensus       138 ~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt~~t~~li  211 (315)
T 3pp8_A          138 EEFSVGIMGA-GVLGAKVAESLQAWGFPLR-CWSRSR--KSWPGVESYVGREELRAFLN--QTRVLINLLPNTAQTVGII  211 (315)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCCEE-EEESSC--CCCTTCEEEESHHHHHHHHH--TCSEEEECCCCCGGGTTCB
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCc--hhhhhhhhhcccCCHHHHHh--hCCEEEEecCCchhhhhhc
Confidence            3456889999 9999999999999999987 666654  333344333   57888887  78999999994 3444444


Q ss_pred             -HHHHH-cCCcEE-EEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 -LEAME-AELDLV-VCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 -~~~~~-~Gi~~i-vi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                       ++..+ .+-..+ |+.+.|-. -+.+.|.+.. ++..+.
T Consensus       212 ~~~~l~~mk~gailIN~aRG~~-vd~~aL~~aL-~~g~i~  249 (315)
T 3pp8_A          212 NSELLDQLPDGAYVLNLARGVH-VQEADLLAAL-DSGKLK  249 (315)
T ss_dssp             SHHHHTTSCTTEEEEECSCGGG-BCHHHHHHHH-HHTSEE
T ss_pred             cHHHHhhCCCCCEEEECCCChh-hhHHHHHHHH-HhCCcc
Confidence             23332 333343 33444421 2333444444 444443

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=96.77  E-value=0.0039  Score=55.03  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhh--cCCCCEEEEecChhh-HHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA--ETKANASAIYVPPPF-AAAAILE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~--~~~iDlaii~vp~~~-~~~~v~~  118 (331)
                      ..+++|+|| |..|+.+++.+++.+|++++.+|.+.....+.|+|++...+++++  +..+|.++++.|... -.++.+.
T Consensus        12 ~k~v~IiGA-Gg~g~~v~~~l~~~~~~~vgfiDd~~~~~~~~g~~Vlg~~~~~~~~~~~~~~~v~iAIg~~~~R~~i~~~   90 (220)
T 4ea9_A           12 IGGVVIIGG-GGHAKVVIESLRACGETVAAIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNRLRQKLGRK   90 (220)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECSCC---CBTTBCEEESGGGHHHHHHTTCCEEEECCCCHHHHHHHHHH
T ss_pred             CCCEEEEcC-CHHHHHHHHHHHhCCCEEEEEEeCCcccCcCCCeeEECCHHHHHHhhcccccEEEEecCCHHHHHHHHHH
Confidence            346889999 778999999888889999988887653345889999976544432  124677888888644 4556777


Q ss_pred             HHHcCCcEEEEecC
Q 020101          119 AMEAELDLVVCITE  132 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~  132 (331)
                      +.+.|++...++.+
T Consensus        91 l~~~g~~~~~~i~~  104 (220)
T 4ea9_A           91 ARDHGFSLVNAIHP  104 (220)
T ss_dssp             HHHTTCEECCEECT
T ss_pred             HHhcCCCcCCcCCC
Confidence            88888765443343

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.76  E-value=0.0019  Score=60.52  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHH-H
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL-E  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~-~  118 (331)
                      +..+|.|||. |++|+.+.+.+..+|++++ ..||... +.  +...+.+++++..  ..|++++++|... ...++. +
T Consensus       123 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~dr~~~-~~--~~~~~~~l~ell~--~aDvV~l~~P~~~~t~~~i~~~  195 (303)
T 1qp8_A          123 QGEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTPK-EG--PWRFTNSLEEALR--EARAAVCALPLNKHTRGLVKYQ  195 (303)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSCC-CS--SSCCBSCSHHHHT--TCSEEEECCCCSTTTTTCBCHH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-cc--CcccCCCHHHHHh--hCCEEEEeCcCchHHHHHhCHH
Confidence            3567899999 9999999999999999977 7887653 22  4445668999887  7999999999763 333332 2


Q ss_pred             HHH-cCC-cEEEEecCCCChhHHHHHHHHHhccCCc
Q 020101          119 AME-AEL-DLVVCITEGIPQHDMVRVKAALNNQSKT  152 (331)
Q Consensus       119 ~~~-~Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi  152 (331)
                      .++ .+- ..+++.+.|-. .+..+|.+.. ++..+
T Consensus       196 ~l~~mk~gailin~srg~~-vd~~aL~~aL-~~g~i  229 (303)
T 1qp8_A          196 HLALMAEDAVFVNVGRAEV-LDRDGVLRIL-KERPQ  229 (303)
T ss_dssp             HHTTSCTTCEEEECSCGGG-BCHHHHHHHH-HHCTT
T ss_pred             HHhhCCCCCEEEECCCCcc-cCHHHHHHHH-HhCCc
Confidence            222 222 23455555522 2333444544 44443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.75  E-value=0.0021  Score=62.44  Aligned_cols=112  Identities=10%  Similarity=0.078  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-C--eEEEEeCCCCCC-ce----ec-----Ccc-------cccCHHHhhhcCCCCE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGG-TE----HL-----GLP-------VFNTVAEAKAETKANA  102 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-~--~iv~~VnP~~~g-~~----i~-----G~p-------~y~sl~dl~~~~~iDl  102 (331)
                      .+|+|+|+ |.+|+.+++.|.+.| .  +++ .++.+... +.    +.     .+.       -..+++++.++.++|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~-v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHIT-LASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEE-EEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEE-EEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            47889999 899999999998876 2  544 55543210 00    00     111       1335666666334899


Q ss_pred             EEEecChhhHHHHHHHHHHcCCcEEEEecCCC-Ch-------hHHHHHHHHHhccCCcE-EEccCC
Q 020101          103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGI-PQ-------HDMVRVKAALNNQSKTR-LVGPNC  159 (331)
Q Consensus       103 aii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~-~e-------~~~~~l~~~a~~~~gi~-viGPnc  159 (331)
                      +|.++|+.....+++.|++.|++.+-  ++++ +.       ....++.+.+ +++|+. +.|+++
T Consensus        80 Vin~ag~~~~~~v~~a~l~~g~~vvD--~a~~~~~~~~~~~~~~~~~l~~~a-~~aG~~~i~g~G~  142 (405)
T 4ina_A           80 VLNIALPYQDLTIMEACLRTGVPYLD--TANYEHPDLAKFEYKEQWAFHDRY-KEKGVMALLGSGF  142 (405)
T ss_dssp             EEECSCGGGHHHHHHHHHHHTCCEEE--SSCCBCTTCSCBCSHHHHTTHHHH-HHHTCEEEECCBT
T ss_pred             EEECCCcccChHHHHHHHHhCCCEEE--ecCCCCcccchhhhHHHHHHHHHH-HHhCCEEEEcCCC
Confidence            99999999999999999999999743  2232 11       1223444555 566665 556654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.74  E-value=0.0026  Score=60.71  Aligned_cols=110  Identities=18%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHH-HcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~-~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~  115 (331)
                      +..+|.|||. |++|+.+.+.+. .+|++++ .+|+.....+   ..|+....+++++..  +.|++++++|... ...+
T Consensus       162 ~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~vp~~~~t~~l  237 (348)
T 2w2k_A          162 RGHVLGAVGL-GAIQKEIARKAVHGLGMKLV-YYDVAPADAETEKALGAERVDSLEELAR--RSDCVSVSVPYMKLTHHL  237 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCSGGGTTC
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHhcCCEEE-EECCCCcchhhHhhcCcEEeCCHHHHhc--cCCEEEEeCCCChHHHHH
Confidence            3457899999 999999999999 8999977 7787652111   136655558988877  6899999999753 3333


Q ss_pred             H-H-HHHHcCCcEE-EEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          116 I-L-EAMEAELDLV-VCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       116 v-~-~~~~~Gi~~i-vi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      + + .....+-..+ ++.+.|- ..+.++|.+.. ++..+.-.|
T Consensus       238 i~~~~l~~mk~gailin~srg~-~vd~~aL~~aL-~~~~i~gag  279 (348)
T 2w2k_A          238 IDEAFFAAMKPGSRIVNTARGP-VISQDALIAAL-KSGKLLSAG  279 (348)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGG-GBCHHHHHHHH-HTTSEEEEE
T ss_pred             hhHHHHhcCCCCCEEEECCCCc-hhCHHHHHHHH-HhCCceEEE
Confidence            3 1 2222333333 4444442 22334455554 444444333

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.74  E-value=0.0027  Score=60.39  Aligned_cols=90  Identities=12%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCce--ecCc--cccc-CHHHhhhcCCCCEEEEecChhhHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTE--HLGL--PVFN-TVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~--i~G~--p~y~-sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      .++|+|+||+|+.|+.+++.|.+.   .+++++..+++..|+.  +.|.  .+.. +.++ ..  ++|+++.++|.....
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~--~~DvV~~a~g~~~s~   82 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FS--SVGLAFFAAAAEVSR   82 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GG--GCSEEEECSCHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hc--CCCEEEEcCCcHHHH
Confidence            367999999999999999998854   3567755555443332  2222  1211 1222 22  689999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCC
Q 020101          114 AAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      +.+..+.++|++. |.++.-|.
T Consensus        83 ~~a~~~~~aG~kv-Id~Sa~~r  103 (340)
T 2hjs_A           83 AHAERARAAGCSV-IDLSGALE  103 (340)
T ss_dssp             HHHHHHHHTTCEE-EETTCTTT
T ss_pred             HHHHHHHHCCCEE-EEeCCCCC
Confidence            9999999999985 55676564

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.72  E-value=0.0041  Score=54.70  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-ee--cCc-ccc-----cCHHHhhhcCCCCEEEEec
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH--LGL-PVF-----NTVAEAKAETKANASAIYV  107 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~i--~G~-p~y-----~sl~dl~~~~~iDlaii~v  107 (331)
                      .+.-+.++|+|.|++|.+|+.+++.|.+.|++++.. +.+.... +.  .++ ..+     .++.+...  ++|++|.+.
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~D~vi~~a   92 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM-VRNEEQGPELRERGASDIVVANLEEDFSHAFA--SIDAVVFAA   92 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESSGGGHHHHHHTTCSEEEECCTTSCCGGGGT--TCSEEEECC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE-ECChHHHHHHHhCCCceEEEcccHHHHHHHHc--CCCEEEECC
Confidence            333456778999999999999999999999997743 3322101 10  122 222     34555555  799999776


Q ss_pred             Chh--------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          108 PPP--------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       108 p~~--------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ...              ....+++.|.+.|++.+|.+++
T Consensus        93 g~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  131 (236)
T 3e8x_A           93 GSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS  131 (236)
T ss_dssp             CCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence            532              2566788888889988777666

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.71  E-value=0.0021  Score=59.18  Aligned_cols=91  Identities=16%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee------------------------------cCcccccCH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------------------------------LGLPVFNTV   91 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i------------------------------~G~p~y~sl   91 (331)
                      ..+|+|||+ |.||..+++.+.+.|++++ .+|++.  +..                              ..+....++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~-l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~   79 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVT-AYDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDL   79 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCH
Confidence            357899999 9999999999999999876 677664  211                              012445677


Q ss_pred             HHhhhcCCCCEEEEecChh--hHHHHHHHHHHc-CCcEEEE-ecCCCChhH
Q 020101           92 AEAKAETKANASAIYVPPP--FAAAAILEAMEA-ELDLVVC-ITEGIPQHD  138 (331)
Q Consensus        92 ~dl~~~~~iDlaii~vp~~--~~~~~v~~~~~~-Gi~~ivi-~t~G~~e~~  138 (331)
                      ++...  +.|++|.++|.+  ....+++++.+. .-..+++ .+++++.++
T Consensus        80 ~~~~~--~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~  128 (283)
T 4e12_A           80 AQAVK--DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSD  128 (283)
T ss_dssp             HHHTT--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred             HHHhc--cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence            77665  799999999986  556666665543 3344443 566776543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.69  E-value=0.0015  Score=62.53  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=69.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v-  116 (331)
                      +..+|.|||. |++|+.+.+.+..+|++++ ..||.....  ...|...+.+++++..  ..|++++++|.. ....++ 
T Consensus       167 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          167 RGETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCCTTCTTSBS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhHhhcCCeecCCHHHHHh--cCCEEEEcCCCCHHHHHHhH
Confidence            4567899999 9999999999999999977 678765211  1246655668999887  689999999974 333333 


Q ss_pred             HHHHH-cCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 LEAME-AELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~~~~~-~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      ++.++ .+-.. +++.+.|-. .+.++|.+.. ++.++.
T Consensus       243 ~~~l~~mk~gailIN~arg~~-vd~~aL~~aL-~~g~i~  279 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGL-VDEKALAQAL-KEGRIR  279 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS-BCHHHHHHHH-HHTSEE
T ss_pred             HHHHhcCCCCCEEEECCCChH-HhHHHHHHHH-HhCCCc
Confidence            23332 23333 444555532 2334455554 555555

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.68  E-value=0.0025  Score=58.99  Aligned_cols=94  Identities=11%  Similarity=-0.016  Sum_probs=60.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----e---------c------------------Ccccc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H---------L------------------GLPVF   88 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i---------~------------------G~p~y   88 (331)
                      +..+|+|||+ |.||..+...+.+.|++++ .+|++...-+     +         .                  .+...
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~   91 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   91 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence            3457999999 9999999999999999876 7777531000     0         1                  23345


Q ss_pred             cCHHHhhhcCCCCEEEEecChhh--HHHHHHHHHHc-CCcEEEE-ecCCCChhH
Q 020101           89 NTVAEAKAETKANASAIYVPPPF--AAAAILEAMEA-ELDLVVC-ITEGIPQHD  138 (331)
Q Consensus        89 ~sl~dl~~~~~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~ivi-~t~G~~e~~  138 (331)
                      .++++...  +.|++|+++|.+.  ..+++++..+. .-+.+++ .+++++.++
T Consensus        92 ~~~~~~~~--~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~  143 (302)
T 1f0y_A           92 TDAASVVH--STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS  143 (302)
T ss_dssp             SCHHHHTT--SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred             cCHHHhhc--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence            67776555  7999999999864  33455554332 2233343 456776443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.67  E-value=0.00078  Score=59.55  Aligned_cols=89  Identities=15%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL-  117 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~-  117 (331)
                      ..+|+|+|+ |++|+.+.+.+.+.|++++ .+|++... +.  ..|+... +++++.+  +.|++++++|+....++++ 
T Consensus        28 ~~~I~iiG~-G~~G~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~--~~DvVi~av~~~~~~~v~~l  102 (215)
T 2vns_A           28 APKVGILGS-GDFARSLATRLVGSGFKVV-VGSRNPKRTARLFPSAAQVT-FQEEAVS--SPEVIFVAVFREHYSSLCSL  102 (215)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHTTCCEE-EEESSHHHHHHHSBTTSEEE-EHHHHTT--SCSEEEECSCGGGSGGGGGG
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCcee-cHHHHHh--CCCEEEECCChHHHHHHHHH
Confidence            457899997 9999999999999898866 66665310 11  1255544 6777766  7999999999876555543 


Q ss_pred             -HHHHcCCcEEEEecCCCChh
Q 020101          118 -EAMEAELDLVVCITEGIPQH  137 (331)
Q Consensus       118 -~~~~~Gi~~ivi~t~G~~e~  137 (331)
                       ... .+ +.++.++.|.+.+
T Consensus       103 ~~~~-~~-~~vv~~s~g~~~~  121 (215)
T 2vns_A          103 SDQL-AG-KILVDVSNPTEQE  121 (215)
T ss_dssp             HHHH-TT-CEEEECCCCCHHH
T ss_pred             HHhc-CC-CEEEEeCCCcccc
Confidence             222 23 4556678887543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.0047  Score=61.26  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-cee---cCccc-------ccCHHHhhhcCCCCEEEEecC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TEH---LGLPV-------FNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~~i---~G~p~-------y~sl~dl~~~~~iDlaii~vp  108 (331)
                      +..+|+|+|+ |.+|+.+++.|.+. +++++ .+|.+... ++.   .++..       +.++.++..  ++|++|.++|
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~-v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~--~~DvVIn~tp   97 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVT-VACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA--DNDVVISLIP   97 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEE-EEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH--TSSEEEECSC
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEE-EEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc--CCCEEEECCc
Confidence            4567899998 99999999999887 67755 66665310 111   13221       123455555  7999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ......+.+.|++.|++.+ ..+ -+.+ +..++.+.| +++|+.++
T Consensus        98 ~~~~~~v~~a~l~~g~~vv-d~~-~~~p-~~~~Ll~~A-k~aGv~~i  140 (467)
T 2axq_A           98 YTFHPNVVKSAIRTKTDVV-TSS-YISP-ALRELEPEI-VKAGITVM  140 (467)
T ss_dssp             GGGHHHHHHHHHHHTCEEE-ECS-CCCH-HHHHHHHHH-HHHTCEEE
T ss_pred             hhhhHHHHHHHHhcCCEEE-Eee-cCCH-HHHHHHHHH-HHcCCEEE
Confidence            9888888899999998763 222 2222 234555555 56676654

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.62  E-value=0.0033  Score=54.71  Aligned_cols=86  Identities=13%  Similarity=0.087  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCceecCccc--------ccCHHHhhhcCCCCEEEEecChh----
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGLPV--------FNTVAEAKAETKANASAIYVPPP----  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~~i~G~p~--------y~sl~dl~~~~~iDlaii~vp~~----  110 (331)
                      +|+|.|++|.+|+.+++.|.+.|+++++.. ++... ....++..        ..++.++.+  ++|++|.+....    
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~~~~~~   78 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV-PQYNNVKAVHFDVDWTPEEMAKQLH--GMDAIINVSGSGGKSL   78 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS-CCCTTEEEEECCTTSCHHHHHTTTT--TCSEEEECCCCTTSSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch-hhcCCceEEEecccCCHHHHHHHHc--CCCEEEECCcCCCCCc
Confidence            688999999999999999999999987443 22211 11122222        223444444  799999877543    


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                            ....+++.|.+.|++.+|.+++
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS  106 (219)
T 3dqp_A           79 LKVDLYGAVKLMQAAEKAEVKRFILLST  106 (219)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence                  2677888888999988777676

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.57  E-value=0.0079  Score=59.29  Aligned_cols=98  Identities=15%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----------------------ecCcccccCHHHhhhcCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----------------------HLGLPVFNTVAEAKAETK   99 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----------------------i~G~p~y~sl~dl~~~~~   99 (331)
                      ++|+|||+ |.+|......|.+.|++++ .+|.+... +.                      ...+....+++++.+  +
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~~V~-~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~--~   78 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGANVR-CIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVP--E   78 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGG--G
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCCEEE-EEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHh--c
Confidence            57899999 9999999999999999977 66655310 00                      011344457777665  6


Q ss_pred             CCEEEEecChh----------hHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHH
Q 020101          100 ANASAIYVPPP----------FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKA  144 (331)
Q Consensus       100 iDlaii~vp~~----------~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~  144 (331)
                      .|++++++|..          .+.++++..... .-..+|+..+.++....+++.+
T Consensus        79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~  134 (450)
T 3gg2_A           79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRK  134 (450)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHH
T ss_pred             CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHH
Confidence            89999999887          677777776653 2344555555565444344433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.55  E-value=0.013  Score=48.57  Aligned_cols=91  Identities=13%  Similarity=0.080  Sum_probs=56.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccc-cC---HHHhhhc--CCCCEEEEecChhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVF-NT---VAEAKAE--TKANASAIYVPPPF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y-~s---l~dl~~~--~~iDlaii~vp~~~  111 (331)
                      ..+|+|+|+ |.+|+.+++.|.+.|++++ .++++... +.   -.|..++ .+   .+.+.+.  .+.|+++++++.+.
T Consensus        19 ~~~v~IiG~-G~iG~~la~~L~~~g~~V~-vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           19 SKYIVIFGC-GRLGSLIANLASSSGHSVV-VVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence            457889998 9999999999999999876 66544310 11   1233322 22   2222110  15899999999877


Q ss_pred             HHHHHHHHHH--cCCcEEEEecCCC
Q 020101          112 AAAAILEAME--AELDLVVCITEGI  134 (331)
Q Consensus       112 ~~~~v~~~~~--~Gi~~ivi~t~G~  134 (331)
                      ....+..+++  .+...++..+.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           97 TNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             HHHHHHHHHHHHCCCCeEEEEECCH
Confidence            6665555544  4666666555543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.54  E-value=0.0044  Score=60.39  Aligned_cols=105  Identities=12%  Similarity=0.066  Sum_probs=68.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-H-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-L-  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v-~-  117 (331)
                      +..++.|||. |++|+.+.+.+..+|++++ ..||... ....+...+.+++++..  ..|++++++|... ...++ + 
T Consensus       144 ~gktlGiIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~  218 (404)
T 1sc6_A          144 RGKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENK-LPLGNATQVQHLSDLLN--MSDVVSLHVPENPSTKNMMGAK  218 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CCCTTCEECSCHHHHHH--HCSEEEECCCSSTTTTTCBCHH
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EEcCCch-hccCCceecCCHHHHHh--cCCEEEEccCCChHHHHHhhHH
Confidence            4567899999 9999999999999999987 7888652 22233555668999988  6899999999752 33233 1 


Q ss_pred             HHHHcCCcE-EEEecCCCChhHHHHHHHHHhccCCc
Q 020101          118 EAMEAELDL-VVCITEGIPQHDMVRVKAALNNQSKT  152 (331)
Q Consensus       118 ~~~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi  152 (331)
                      .....+-.. +++.+.|-. -+...|.+.. ++.++
T Consensus       219 ~l~~mk~ga~lIN~aRg~~-vd~~aL~~aL-~~g~i  252 (404)
T 1sc6_A          219 EISLMKPGSLLINASRGTV-VDIPALADAL-ASKHL  252 (404)
T ss_dssp             HHHHSCTTEEEEECSCSSS-BCHHHHHHHH-HTTSE
T ss_pred             HHhhcCCCeEEEECCCChH-HhHHHHHHHH-HcCCc
Confidence            222333333 345555532 2334455554 45444

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.52  E-value=0.0098  Score=47.47  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=57.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---cCcccc-c---CHHHhhhc--CCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVF-N---TVAEAKAE--TKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---~G~p~y-~---sl~dl~~~--~~iDlaii~vp~~  110 (331)
                      +.++|+|+|+ |.+|+.+.+.|.+.|++++ .++++... +..   .|...+ .   +.+.+.+.  .+.|++++++|.+
T Consensus         3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            3467899999 9999999999999999876 66654310 111   244332 1   22222211  2689999999987


Q ss_pred             hHHHHH-HHHHHcCCcEEEEecCCC
Q 020101          111 FAAAAI-LEAMEAELDLVVCITEGI  134 (331)
Q Consensus       111 ~~~~~v-~~~~~~Gi~~ivi~t~G~  134 (331)
                      .....+ ..+.+.+.+.++..+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           81 EVNLMSSLLAKSYGINKTIARISEI  105 (140)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred             hHHHHHHHHHHHcCCCEEEEEecCH
Confidence            654433 445556766666656554

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.49  E-value=0.005  Score=58.75  Aligned_cols=107  Identities=16%  Similarity=0.097  Sum_probs=67.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-ecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH--
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI--  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v--  116 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ ..||.....+ ..|...+.+++++.+  +.|++++++|. +....++  
T Consensus       172 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~~Plt~~T~~li~~  247 (345)
T 4g2n_A          172 TGRRLGIFGM-GRIGRAIATRARGFGLAIH-YHNRTRLSHALEEGAIYHDTLDSLLG--ASDIFLIAAPGRPELKGFLDH  247 (345)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHTTCEECSSHHHHHH--TCSEEEECSCCCGGGTTCBCH
T ss_pred             CCCEEEEEEe-ChhHHHHHHHHHHCCCEEE-EECCCCcchhhhcCCeEeCCHHHHHh--hCCEEEEecCCCHHHHHHhCH
Confidence            4567899999 9999999999999999987 7887642111 226555569999998  79999999994 3333333  


Q ss_pred             HHHHHcCCcEEE-EecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 LEAMEAELDLVV-CITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~~~~~~Gi~~iv-i~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      +.....+-..++ +.+.|-- -+.+.|.++. ++..+.
T Consensus       248 ~~l~~mk~gailIN~aRG~~-vde~aL~~aL-~~g~i~  283 (345)
T 4g2n_A          248 DRIAKIPEGAVVINISRGDL-INDDALIEAL-RSKHLF  283 (345)
T ss_dssp             HHHHHSCTTEEEEECSCGGG-BCHHHHHHHH-HHTSEE
T ss_pred             HHHhhCCCCcEEEECCCCch-hCHHHHHHHH-HhCCce
Confidence            223333444433 3444421 2333445544 444444

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.47  E-value=0.0087  Score=50.81  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCccc-------ccCHHHhhhcCCCCEEEEecChh--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPV-------FNTVAEAKAETKANASAIYVPPP--  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~-------y~sl~dl~~~~~iDlaii~vp~~--  110 (331)
                      ++|+|.|++|.+|+.+++.|.+.|++++.. +.+... ..  ..++..       ..+++++.+  ++|+++.+....  
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~~   80 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL-VRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRND   80 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEE-EeChhhcccccCCceEEEEecCCCHHHHHHHHc--CCCEEEECccCCCC
Confidence            578899999999999999999999987743 322110 00  112221       223555555  689999776532  


Q ss_pred             ---------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ---------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ---------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                               ....+++.|.+.+++.++.+++
T Consensus        81 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss  111 (206)
T 1hdo_A           81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (206)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence                     3567778888888888776665

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.47  E-value=0.0068  Score=56.99  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-------CeEEEEeCCCCC-----C-cee----------------cCcccccCHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKG-----G-TEH----------------LGLPVFNTVAE   93 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-------~~iv~~VnP~~~-----g-~~i----------------~G~p~y~sl~d   93 (331)
                      .+|+|||+ |.||..+...|.+.|       +++. .+++...     . +.+                .++....++++
T Consensus         9 mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            9 KKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence            57999999 999999999988877       6655 6665431     0 000                12334467777


Q ss_pred             hhhcCCCCEEEEecChhhHHHHHHHHHHc-C-CcEEEEecCCCC
Q 020101           94 AKAETKANASAIYVPPPFAAAAILEAMEA-E-LDLVVCITEGIP  135 (331)
Q Consensus        94 l~~~~~iDlaii~vp~~~~~~~v~~~~~~-G-i~~ivi~t~G~~  135 (331)
                      ..+  +.|++++++|+....+++++.... + =..++.++.|+.
T Consensus        87 ~~~--~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           87 AAE--DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHT--TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHc--CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            665  789999999999888888876542 1 134555777875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.46  E-value=0.0026  Score=60.72  Aligned_cols=90  Identities=10%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-------CeEEEEeCCCCC-----C-cee----------------cCcccccCHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVTPKKG-----G-TEH----------------LGLPVFNTVAE   93 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-------~~iv~~VnP~~~-----g-~~i----------------~G~p~y~sl~d   93 (331)
                      .+|+|||+ |+||..+...|.+.|       +++. .+|+...     . +.+                .++....++++
T Consensus        22 ~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e   99 (375)
T 1yj8_A           22 LKISILGS-GNWASAISKVVGTNAKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS   99 (375)
T ss_dssp             BCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence            47899999 999999999988877       7765 5555431     0 000                13445567777


Q ss_pred             hhhcCCCCEEEEecChhhHHHHHHHHHH----c-CC-cEEEEecCCCCh
Q 020101           94 AKAETKANASAIYVPPPFAAAAILEAME----A-EL-DLVVCITEGIPQ  136 (331)
Q Consensus        94 l~~~~~iDlaii~vp~~~~~~~v~~~~~----~-Gi-~~ivi~t~G~~e  136 (331)
                      +.+  +.|++++++|+....+++++...    . +- ..++.++.|++.
T Consensus       100 a~~--~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A          100 VIN--DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             HHT--TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             HHc--CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            665  68999999999988888887654    1 11 244556678764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.45  E-value=0.0053  Score=57.54  Aligned_cols=89  Identities=13%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---cCc--------------ccccCHHHhhhcCCCCEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGL--------------PVFNTVAEAKAETKANAS  103 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---~G~--------------p~y~sl~dl~~~~~iDla  103 (331)
                      .++|+|||+ |.+|..+...|.+.|+++. .+++.... +.+   .++              ..+.+++++..  +.|++
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~v   79 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVI   79 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh--cCCEE
Confidence            367999999 9999999999998899865 66664310 011   121              24567888665  79999


Q ss_pred             EEecChhhHHHHHHHHHHc-CCcEEEEecCCC
Q 020101          104 AIYVPPPFAAAAILEAMEA-ELDLVVCITEGI  134 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~-Gi~~ivi~t~G~  134 (331)
                      ++++|+..+.++++++... +-..+++...|+
T Consensus        80 i~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~  111 (359)
T 1bg6_A           80 LIVVPAIHHASIAANIASYISEGQLIILNPGA  111 (359)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence            9999999998888776542 222333333553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.42  E-value=0.0089  Score=54.09  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--c---Cc----c-cccCHHHhhhcCCCCEEEEecChhhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L---GL----P-VFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~---G~----p-~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +|+|||+ |+||..+...|.+.|++++ .+|++... +.+  .   |.    . ...+. +..+  +.|++++++|+..+
T Consensus         2 ~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~d~vi~~v~~~~~   76 (291)
T 1ks9_A            2 KITVLGC-GALGQLWLTALCKQGHEVQ-GWLRVPQPYCSVNLVETDGSIFNESLTANDP-DFLA--TSDLLLVTLKAWQV   76 (291)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSEEEEEEECTTSCEEEEEEEESCH-HHHH--TCSEEEECSCGGGH
T ss_pred             eEEEECc-CHHHHHHHHHHHhCCCCEE-EEEcCccceeeEEEEcCCCceeeeeeeecCc-cccC--CCCEEEEEecHHhH
Confidence            6889999 9999999999999999876 66654421 111  1   21    1 12333 3334  68999999999999


Q ss_pred             HHHHHHHHHc-C-CcEEEEecCCCCh
Q 020101          113 AAAILEAMEA-E-LDLVVCITEGIPQ  136 (331)
Q Consensus       113 ~~~v~~~~~~-G-i~~ivi~t~G~~e  136 (331)
                      .+++++.... + -..++.++.|+..
T Consensus        77 ~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           77 SDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             HHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             HHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            8888776543 1 1234556888754

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.42  E-value=0.0076  Score=57.10  Aligned_cols=105  Identities=13%  Similarity=0.066  Sum_probs=65.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-H-H
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-L-E  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v-~-~  118 (331)
                      ..+|.|||. |++|+.+++.+..+|++++ .+||... ........|.+++++..  ..|++++++|... ...++ + .
T Consensus       145 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~~~~P~~~~t~~li~~~~  219 (333)
T 1dxy_A          145 QQTVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPM-KGDHPDFDYVSLEDLFK--QSDVIDLHVPGIEQNTHIINEAA  219 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-SSCCTTCEECCHHHHHH--HCSEEEECCCCCGGGTTSBCHHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcc-hhhHhccccCCHHHHHh--cCCEEEEcCCCchhHHHHhCHHH
Confidence            456889999 9999999999999999977 7777652 11111123568999887  6899999999643 22222 1 1


Q ss_pred             HHHcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          119 AMEAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       119 ~~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      ....+-.. +++.+.|-. .+.+.|.+.. ++.++.
T Consensus       220 l~~mk~ga~lIn~srg~~-vd~~aL~~aL-~~g~i~  253 (333)
T 1dxy_A          220 FNLMKPGAIVINTARPNL-IDTQAMLSNL-KSGKLA  253 (333)
T ss_dssp             HHHSCTTEEEEECSCTTS-BCHHHHHHHH-HTTSEE
T ss_pred             HhhCCCCcEEEECCCCcc-cCHHHHHHHH-HhCCcc
Confidence            22223333 344555532 3334555555 555554

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.42  E-value=0.01  Score=57.93  Aligned_cols=74  Identities=20%  Similarity=0.169  Sum_probs=52.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee---------------------cC-cccccCHHHhhhcCCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---------------------LG-LPVFNTVAEAKAETKA  100 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i---------------------~G-~p~y~sl~dl~~~~~i  100 (331)
                      +|+|||+ |.+|..+...|.+.|++++ .+|.+... +.+                     .| +....++++...  +.
T Consensus         2 kI~VIG~-G~vG~~~A~~la~~G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~--~a   77 (436)
T 1mv8_A            2 RISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--DS   77 (436)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--TC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc--cC
Confidence            6889998 9999999999999999876 66654310 000                     12 444556776665  68


Q ss_pred             CEEEEecChhh----------HHHHHHHHHH
Q 020101          101 NASAIYVPPPF----------AAAAILEAME  121 (331)
Q Consensus       101 Dlaii~vp~~~----------~~~~v~~~~~  121 (331)
                      |++++++|...          +.+++++...
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~  108 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVCREIGF  108 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHHHHHHH
Confidence            99999998765          6777666543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.40  E-value=0.0069  Score=59.72  Aligned_cols=106  Identities=15%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----ecCcc-----c--ccCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGLP-----V--FNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----i~G~p-----~--y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ..+|+|+|+ |.+|+.+++.|.+.|++++ .++.+... +.    ..+..     +  +.+++++.+  ++|++|.++|.
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~~V~-v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~   78 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPY   78 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEE-EEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcCEEE-EEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCcc
Confidence            356888995 9999999999998898855 55543210 01    11121     1  123445555  79999999998


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ..+..+.+.|++.|.+. +.  .........++.+.| +++|+.++
T Consensus        79 ~~~~~i~~a~l~~g~~v-vd--~~~~~~~~~~l~~aA-~~aGv~~i  120 (450)
T 1ff9_A           79 TFHATVIKSAIRQKKHV-VT--TSYVSPAMMELDQAA-KDAGITVM  120 (450)
T ss_dssp             -CHHHHHHHHHHHTCEE-EE--SSCCCHHHHHTHHHH-HHTTCEEE
T ss_pred             ccchHHHHHHHhCCCeE-EE--eecccHHHHHHHHHH-HHCCCeEE
Confidence            87777888899998775 32  223233445666666 67887754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.38  E-value=0.013  Score=57.93  Aligned_cols=101  Identities=14%  Similarity=0.143  Sum_probs=61.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-cee---------------------cCcccccCHHHhhhc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TEH---------------------LGLPVFNTVAEAKAE   97 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~~i---------------------~G~p~y~sl~dl~~~   97 (331)
                      ..+|+|||+ |.+|..+...|.+.  |++++ .+|.+... +.+                     .++....++++..+ 
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~-~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~-   81 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVT-VVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK-   81 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH-
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHh-
Confidence            357999998 99999999999887  78876 66654310 010                     13444456776665 


Q ss_pred             CCCCEEEEecChhh---------------HHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHH
Q 020101           98 TKANASAIYVPPPF---------------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus        98 ~~iDlaii~vp~~~---------------~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                       +.|++++++|...               +.++++...+. .-..+|+..+..+....+++.+..
T Consensus        82 -~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l  145 (467)
T 2q3e_A           82 -EADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIF  145 (467)
T ss_dssp             -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHH
T ss_pred             -cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHH
Confidence             6899999987543               34555555543 333445444444433334444444

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.38  E-value=0.00055  Score=60.22  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      +..+|.|||+ |+||+.+.+.|.+.|++++ .+|++...+.  ..|+... +++++.+  +.|++++++|+....+++ +
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~-~~~~~~~--~aDvVilav~~~~~~~v~-~   91 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGYSVV-FGSRNPQVSSLLPRGAEVL-CYSEAAS--RSDVIVLAVHREHYDFLA-E   91 (201)
Confidence            4457889998 9999999999998888865 5665542111  1345544 6666665  689999999998766655 2


Q ss_pred             HHHcC-CcEEEEecCCCCh
Q 020101          119 AMEAE-LDLVVCITEGIPQ  136 (331)
Q Consensus       119 ~~~~G-i~~ivi~t~G~~e  136 (331)
                      ..... =+.++.++.|++.
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            22111 1244556778753

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.38  E-value=0.0085  Score=57.16  Aligned_cols=89  Identities=9%  Similarity=0.020  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCceec--Ccc-cccCHHH-hhhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL--GLP-VFNTVAE-AKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i~--G~p-~y~sl~d-l~~~~~iDlaii~vp~~~~~~~  115 (331)
                      ++|+|+||||-.|..+++.|.++.|   +++..-..+..|+.+.  |.. .+.++++ ..  .++|+++.++|.....+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~--~~~Dvvf~a~~~~~s~~~   79 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADP--SGLDIALFSAGSAMSKVQ   79 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCC--TTCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHh--ccCCEEEECCChHHHHHH
Confidence            6899999999999999998888754   4554455666565432  210 1111111 11  268999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCC
Q 020101          116 ILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +..+.++|++. |-.++-|
T Consensus        80 a~~~~~~G~~v-ID~Sa~~   97 (344)
T 3tz6_A           80 APRFAAAGVTV-IDNSSAW   97 (344)
T ss_dssp             HHHHHHTTCEE-EECSSTT
T ss_pred             HHHHHhCCCEE-EECCCcc
Confidence            99999999975 5566654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.36  E-value=0.0064  Score=54.98  Aligned_cols=87  Identities=21%  Similarity=0.170  Sum_probs=59.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEe-CCCCCCc-eecCcccc-------cCHHHhhhcCCCCEEEEecCh----
Q 020101           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGV-TPKKGGT-EHLGLPVF-------NTVAEAKAETKANASAIYVPP----  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~V-nP~~~g~-~i~G~p~y-------~sl~dl~~~~~iDlaii~vp~----  109 (331)
                      +|+|.|++|.+|+.+++.|.+. |+++++.+ +|..... .-.++.++       .+++++.+  ++|+++.+...    
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~~~   79 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSIIHPS   79 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCCCSH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCccc
Confidence            5889999999999999998887 88877543 3322100 01233222       23555555  79999988654    


Q ss_pred             ----hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ----PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ----~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                          .....+++.|.+.|++.++.+++
T Consensus        80 ~~~~~~~~~l~~aa~~~gv~~iv~~Ss  106 (289)
T 3e48_A           80 FKRIPEVENLVYAAKQSGVAHIIFIGY  106 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                45667888899999998776665

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.36  E-value=0.0063  Score=56.84  Aligned_cols=90  Identities=18%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-------ec----------CcccccCHHHhhhcCCCCEEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------HL----------GLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-------i~----------G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      .+|+|+|+ |.+|......|.+.|+++. .+++... +.       +.          .+.++.+.+++.+  +.|++++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~--~~DlVil   77 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGHCVS-VVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET--KPDCTLL   77 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTCEEE-EECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS--CCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC--CCCEEEE
Confidence            57899999 9999999999998898876 6665431 11       11          1234556777654  6899999


Q ss_pred             ecChhhHHHHHHHHHHc-C-CcEEEEecCCCChh
Q 020101          106 YVPPPFAAAAILEAMEA-E-LDLVVCITEGIPQH  137 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~-G-i~~ivi~t~G~~e~  137 (331)
                      +||+....++++++... + -..++.++.|+..+
T Consensus        78 avK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~  111 (320)
T 3i83_A           78 CIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE  111 (320)
T ss_dssp             CCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS
T ss_pred             ecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH
Confidence            99999988888776542 1 13566688899643

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=96.35  E-value=0.0023  Score=62.91  Aligned_cols=119  Identities=13%  Similarity=0.192  Sum_probs=80.8

Q ss_pred             ccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC---C-----CceecCcccccCHHHhhhcCCCCEEEEe
Q 020101           35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK---G-----GTEHLGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        35 ~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~---~-----g~~i~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      -++|..  .+|+|||. |..|+.+..||++.|.+++.++-|..   .     ..+-.|..+++ ++|+.+  ..|++++.
T Consensus        32 ~~~lkg--K~IaVIGy-GsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~-~~eA~~--~ADvV~~L  105 (491)
T 3ulk_A           32 ASYLQG--KKVVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGT-YEELIP--QADLVINL  105 (491)
T ss_dssp             TGGGTT--SEEEEESC-SHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEE-HHHHGG--GCSEEEEC
T ss_pred             hHHHcC--CEEEEeCC-ChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecC-HHHHHH--hCCEEEEe
Confidence            356744  56788999 99999999999999999776665431   0     01246888775 777766  68999999


Q ss_pred             cChhhHHHHHHHHHHcC--CcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101          107 VPPPFAAAAILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~G--i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      +|.+...++.++ ++..  -...+.|+.||+-.... + + ..+.-++-++.|.++|-.
T Consensus       106 ~PD~~q~~vy~~-I~p~lk~G~~L~faHGFnI~~~~-i-~-pp~dvdVimVAPKgpG~~  160 (491)
T 3ulk_A          106 TPDKQHSDVVRT-VQPLMKDGAALGYSHGFNIVEVG-E-Q-IRKDITVVMVAPKCPGTE  160 (491)
T ss_dssp             SCGGGHHHHHHH-HGGGSCTTCEEEESSCHHHHTTC-C-C-CCTTSEEEEEEESSCHHH
T ss_pred             CChhhHHHHHHH-HHhhCCCCCEEEecCcccccccc-c-c-cCCCcceEEeCCCCCcHH
Confidence            999999888876 6543  34567799999532100 0 0 002333556677777643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.32  E-value=0.0042  Score=58.33  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v-  116 (331)
                      +..+|.|||. |++|+.+.+.++..|++++ .+||.....  ...|.. +.+++++..  +.|++++++|... ...++ 
T Consensus       141 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          141 AGKTIGIVGF-GRIGTKVGIIANAMGMKVL-AYDILDIREKAEKINAK-AVSLEELLK--NSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCE-ECCHHHHHH--HCSEEEECCCCCTTSCCSBC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCcchhHHHhcCce-ecCHHHHHh--hCCEEEEeccCChHHHHhhC
Confidence            3567899999 9999999999999999987 778765211  123554 348988887  6899999999543 22222 


Q ss_pred             HHH-HHcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 LEA-MEAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~~~-~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      ++. ...+-.. +++.+.|- -.+...|.+.. ++.++.
T Consensus       216 ~~~l~~mk~ga~lIn~arg~-~vd~~aL~~aL-~~g~i~  252 (313)
T 2ekl_A          216 YPQFELMKDNVIIVNTSRAV-AVNGKALLDYI-KKGKVY  252 (313)
T ss_dssp             HHHHHHSCTTEEEEESSCGG-GBCHHHHHHHH-HTTCEE
T ss_pred             HHHHhcCCCCCEEEECCCCc-ccCHHHHHHHH-HcCCCc
Confidence            111 1223233 34445542 23344555555 455443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.31  E-value=0.012  Score=57.55  Aligned_cols=106  Identities=11%  Similarity=0.101  Sum_probs=67.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH--H
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI--L  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v--~  117 (331)
                      +..+|.|||. |++|+.+.+.+..+|++++ ..||... ....+...+.+++++..  ..|++++++|... ...++  +
T Consensus       155 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~yd~~~~-~~~~~~~~~~sl~ell~--~aDvV~lhvPlt~~T~~li~~~  229 (416)
T 3k5p_A          155 RGKTLGIVGY-GNIGSQVGNLAESLGMTVR-YYDTSDK-LQYGNVKPAASLDELLK--TSDVVSLHVPSSKSTSKLITEA  229 (416)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTCC-CCBTTBEECSSHHHHHH--HCSEEEECCCC-----CCBCHH
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCcch-hcccCcEecCCHHHHHh--hCCEEEEeCCCCHHHhhhcCHH
Confidence            4567899999 9999999999999999987 7787641 22334455678999998  7899999999643 33333  2


Q ss_pred             HHHHcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          118 EAMEAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       118 ~~~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      .....+-.. +|+.+.|-. -+...|.++. ++..+.
T Consensus       230 ~l~~mk~gailIN~aRG~v-vd~~aL~~aL-~~g~i~  264 (416)
T 3k5p_A          230 KLRKMKKGAFLINNARGSD-VDLEALAKVL-QEGHLA  264 (416)
T ss_dssp             HHHHSCTTEEEEECSCTTS-BCHHHHHHHH-HTTSEE
T ss_pred             HHhhCCCCcEEEECCCChh-hhHHHHHHHH-HcCCcc
Confidence            233334334 344555532 2334455554 455544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.30  E-value=0.013  Score=58.32  Aligned_cols=101  Identities=18%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--c-------C-------------cccccCHHHhhhc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-------G-------------LPVFNTVAEAKAE   97 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~-------G-------------~p~y~sl~dl~~~   97 (331)
                      -+++|+|||+ |.+|......|.+.|++++ ++|.+... +.+  .       |             +....++++..+ 
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~~V~-~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~-   83 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGHDVF-CLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVA-   83 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHH-
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhh-
Confidence            4689999999 9999999999999999977 66654210 000  1       1             223345655554 


Q ss_pred             CCCCEEEEecCh----------hhHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHH
Q 020101           98 TKANASAIYVPP----------PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAA  145 (331)
Q Consensus        98 ~~iDlaii~vp~----------~~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~  145 (331)
                       +.|++++++|.          ..+.++++..... .-..+|+..++++....+++.+.
T Consensus        84 -~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~  141 (478)
T 2y0c_A           84 -HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAA  141 (478)
T ss_dssp             -HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHH
T ss_pred             -cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHH
Confidence             58999999998          7888888776652 33455555567655443334333

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.30  E-value=0.0064  Score=52.90  Aligned_cols=86  Identities=12%  Similarity=0.040  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHH-HcCCeEEEEe-CCC-CCCc---eecCccc-------ccCHHHhhhcCCCCEEEEecCh-
Q 020101           44 RVICQGITGKNGTFHTEQAI-EYGTKMVGGV-TPK-KGGT---EHLGLPV-------FNTVAEAKAETKANASAIYVPP-  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~-~~g~~iv~~V-nP~-~~g~---~i~G~p~-------y~sl~dl~~~~~iDlaii~vp~-  109 (331)
                      +|+|.|++|.+|+.+++.|. +.|++++... ++. ...+   ...++..       ..+++++.+  ++|++|.+... 
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~ag~~   84 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGAMES   84 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESCCCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcCCCC
Confidence            48899999999999999999 7899977432 332 1000   1111221       223555555  79999987754 


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        + ...+++.+.+.|++.+|.+++
T Consensus        85 n~~-~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           85 GSD-MASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             HHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred             Chh-HHHHHHHHHhcCCCeEEEEee
Confidence              3 667777888889988777665

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.28  E-value=0.0033  Score=59.29  Aligned_cols=66  Identities=9%  Similarity=0.156  Sum_probs=51.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC-CCCCce--ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-KKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP-~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|||. |++|+.+++.+...|++++ .+|| ......  ..|.....+++++..  +.|++++++|..
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvVil~~p~~  213 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPST  213 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcChhhhhhcCcEEcCCHHHHHh--hCCEEEEeccCc
Confidence            4567899999 9999999999999999977 7888 652111  146654558999887  689999999964

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.28  E-value=0.0042  Score=58.34  Aligned_cols=97  Identities=15%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHHH-H
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAIL-E  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v~-~  118 (331)
                      +..+|.|||. |++|+.+.+.+..+|++++ .+||...  ... + .+.+++++..  +.|++++++|... ...++. +
T Consensus       143 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~--~~~-~-~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~  214 (311)
T 2cuk_A          143 QGLTLGLVGM-GRIGQAVAKRALAFGMRVV-YHARTPK--PLP-Y-PFLSLEELLK--EADVVSLHTPLTPETHRLLNRE  214 (311)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC--SSS-S-CBCCHHHHHH--HCSEEEECCCCCTTTTTCBCHH
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHCCCEEE-EECCCCc--ccc-c-ccCCHHHHHh--hCCEEEEeCCCChHHHhhcCHH
Confidence            4567899999 9999999999999999977 7887652  212 2 3678999887  6899999999863 333332 2


Q ss_pred             HHH-cCCc-EEEEecCCCChhHHHHHHHHH
Q 020101          119 AME-AELD-LVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus       119 ~~~-~Gi~-~ivi~t~G~~e~~~~~l~~~a  146 (331)
                      ..+ .+-. .+++.+.|- -.+..+|.+..
T Consensus       215 ~l~~mk~ga~lin~srg~-~vd~~aL~~aL  243 (311)
T 2cuk_A          215 RLFAMKRGAILLNTARGA-LVDTEALVEAL  243 (311)
T ss_dssp             HHTTSCTTCEEEECSCGG-GBCHHHHHHHH
T ss_pred             HHhhCCCCcEEEECCCCC-ccCHHHHHHHH
Confidence            222 2222 345555552 22334555555

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.26  E-value=0.0064  Score=58.17  Aligned_cols=65  Identities=15%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ...+|.|||. |++|+.+++.+..+|++++ ..|+.....+   ..|+..+.+++++..  +.|++++++|.
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~Pl  230 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLL-YHDRLQMAPELEKETGAKFVEDLNEMLP--KCDVIVINMPL  230 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCEEE-EECSSCCCHHHHHHHCCEECSCHHHHGG--GCSEEEECSCC
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCCEEE-EeCCCccCHHHHHhCCCeEcCCHHHHHh--cCCEEEECCCC
Confidence            4567899999 9999999999999999977 7777542111   246666678999988  78999999995

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.25  E-value=0.0055  Score=58.04  Aligned_cols=107  Identities=20%  Similarity=0.225  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v-  116 (331)
                      +..+|.|||. |++|+.+++.+...|++++ .+|+....+.  ..|+. +.+++++..  +.|++++++|.. ....++ 
T Consensus       145 ~g~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~e~l~--~aDiVil~vp~~~~t~~~i~  219 (333)
T 2d0i_A          145 YGKKVGILGM-GAIGKAIARRLIPFGVKLY-YWSRHRKVNVEKELKAR-YMDIDELLE--KSDIVILALPLTRDTYHIIN  219 (333)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCHHHHHHHTEE-ECCHHHHHH--HCSEEEECCCCCTTTTTSBC
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCce-ecCHHHHHh--hCCEEEEcCCCChHHHHHhC
Confidence            3567899999 9999999999999999977 7787652111  13544 347888876  689999999987 333333 


Q ss_pred             ---HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 ---LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 ---~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                         ....+.|  .+++.+.|.. .+..+|.+.. ++..+.-.|
T Consensus       220 ~~~~~~mk~g--ilin~srg~~-vd~~aL~~aL-~~~~i~gag  258 (333)
T 2d0i_A          220 EERVKKLEGK--YLVNIGRGAL-VDEKAVTEAI-KQGKLKGYA  258 (333)
T ss_dssp             HHHHHHTBTC--EEEECSCGGG-BCHHHHHHHH-HTTCBCEEE
T ss_pred             HHHHhhCCCC--EEEECCCCcc-cCHHHHHHHH-HcCCceEEE
Confidence               2233445  5555555532 2233444444 444444444

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.23  E-value=0.017  Score=52.07  Aligned_cols=73  Identities=8%  Similarity=-0.066  Sum_probs=54.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      |..++|+|||+ |++|..+.+.|.+.|++++ .+|..               +++ .  +.|  ++++|.+...++++++
T Consensus         4 ~~~mkI~IIG~-G~~G~sLA~~L~~~G~~V~-~~~~~---------------~~~-~--~aD--ilavP~~ai~~vl~~l   61 (232)
T 3dfu_A            4 APRLRVGIFDD-GSSTVNMAEKLDSVGHYVT-VLHAP---------------EDI-R--DFE--LVVIDAHGVEGYVEKL   61 (232)
T ss_dssp             CCCCEEEEECC-SCCCSCHHHHHHHTTCEEE-ECSSG---------------GGG-G--GCS--EEEECSSCHHHHHHHH
T ss_pred             CCCcEEEEEee-CHHHHHHHHHHHHCCCEEE-EecCH---------------HHh-c--cCC--EEEEcHHHHHHHHHHH
Confidence            44578999999 9999999999999999877 55541               233 2  468  9999999999999887


Q ss_pred             HHc-CCcEEEEecCCC
Q 020101          120 MEA-ELDLVVCITEGI  134 (331)
Q Consensus       120 ~~~-Gi~~ivi~t~G~  134 (331)
                      ... .-..+|+-++|-
T Consensus        62 ~~~l~~g~ivvd~sgs   77 (232)
T 3dfu_A           62 SAFARRGQMFLHTSLT   77 (232)
T ss_dssp             HTTCCTTCEEEECCSS
T ss_pred             HHhcCCCCEEEEECCc
Confidence            753 233445444553

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.22  E-value=0.0046  Score=58.53  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|.|||. |++|+.+++.+..+|++++ .+||... ......-.|.+++++..  +.|++++++|..
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~~~~p~t  209 (331)
T 1xdw_A          146 NCTVGVVGL-GRIGRVAAQIFHGMGATVI-GEDVFEI-KGIEDYCTQVSLDEVLE--KSDIITIHAPYI  209 (331)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CSCTTTCEECCHHHHHH--HCSEEEECCCCC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcc-HHHHhccccCCHHHHHh--hCCEEEEecCCc
Confidence            456889999 9999999999999999977 7787652 11111123568999887  689999999863

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.22  E-value=0.0049  Score=58.33  Aligned_cols=107  Identities=20%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-eecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHH-H
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI-L  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v-~  117 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ ++|+..... .......+.+++++..  +.|++++++|. +....++ +
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPlt~~t~~li~~  211 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASALGMHVI-GVNTTGHPADHFHETVAFTATADALA--TANFIVNALPLTPTTHHLFST  211 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSCCCCTTCSEEEEGGGCHHHHH--HCSEEEECCCCCGGGTTCBSH
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhCCCEEE-EECCCcchhHhHhhccccCCHHHHHh--hCCEEEEcCCCchHHHHhcCH
Confidence            4567899999 9999999999999999987 677654111 1111223467889887  68999999994 3333333 2


Q ss_pred             HHHH-cCCc-EEEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          118 EAME-AELD-LVVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       118 ~~~~-~Gi~-~ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      +.++ .+-. .+|+.+.|-. -+.+.|.+.. ++..+.
T Consensus       212 ~~l~~mk~gailIN~aRG~~-vd~~aL~~aL-~~g~i~  247 (324)
T 3evt_A          212 ELFQQTKQQPMLINIGRGPA-VDTTALMTAL-DHHQLS  247 (324)
T ss_dssp             HHHHTCCSCCEEEECSCGGG-BCHHHHHHHH-HTTSCS
T ss_pred             HHHhcCCCCCEEEEcCCChh-hhHHHHHHHH-HhCCce
Confidence            2232 2322 3444554432 2333455544 455444

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.22  E-value=0.0012  Score=61.24  Aligned_cols=115  Identities=15%  Similarity=0.284  Sum_probs=69.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCccc--ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +..+|.|+|+ |++|+.+++.+...|.+++ .+||.....+   ..|..+  +.+++++..  +.|++++++|....-+.
T Consensus       156 ~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~  231 (300)
T 2rir_A          156 HGSQVAVLGL-GRTGMTIARTFAALGANVK-VGARSSAHLARITEMGLVPFHTDELKEHVK--DIDICINTIPSMILNQT  231 (300)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTCEEEEGGGHHHHST--TCSEEEECCSSCCBCHH
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCeEEchhhHHHHhh--CCCEEEECCChhhhCHH
Confidence            3567899999 9999999999999999876 7777641111   125443  357888776  79999999998543221


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP  165 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc~Gi~~p  165 (331)
                      .-...+.| ..++.++.|-...+.    +.+ ++.|++++ -||..|.+.|
T Consensus       232 ~~~~mk~g-~~lin~a~g~~~~~~----~~a-~~~G~~~i~~pg~~g~v~~  276 (300)
T 2rir_A          232 VLSSMTPK-TLILDLASRPGGTDF----KYA-EKQGIKALLAPGLPGIVAP  276 (300)
T ss_dssp             HHTTSCTT-CEEEECSSTTCSBCH----HHH-HHHTCEEEECCCHHHHHCH
T ss_pred             HHHhCCCC-CEEEEEeCCCCCcCH----HHH-HHCCCEEEECCCCCCcHHH
Confidence            11222233 234555544222222    233 45677755 5665554433

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.22  E-value=0.0095  Score=57.73  Aligned_cols=98  Identities=13%  Similarity=0.043  Sum_probs=61.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--cCc------------------ccccCHHHhhhcCCCCE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGL------------------PVFNTVAEAKAETKANA  102 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~G~------------------p~y~sl~dl~~~~~iDl  102 (331)
                      +|+|||+ |.+|......|.+ |++++ ++|.+... +.+  .+.                  ....++++...  +.|+
T Consensus         2 kI~VIG~-G~vG~~~A~~La~-G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--~aDv   76 (402)
T 1dlj_A            2 KIAVAGS-GYVGLSLGVLLSL-QNEVT-IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--EAEL   76 (402)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--HCSE
T ss_pred             EEEEECC-CHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--CCCE
Confidence            6889999 9999999998888 98876 66664310 011  122                  23345655555  5899


Q ss_pred             EEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHH
Q 020101          103 SAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus       103 aii~vp~~-----------~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                      +++++|+.           .+.++++.....+-..+|+..+..+....+++.+..
T Consensus        77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~  131 (402)
T 1dlj_A           77 VIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKF  131 (402)
T ss_dssp             EEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHT
T ss_pred             EEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHh
Confidence            99999987           477777766554444555552333333344555444

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.20  E-value=0.009  Score=59.33  Aligned_cols=80  Identities=10%  Similarity=0.039  Sum_probs=58.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CC---eEEEEeCCCCCCce---ecCcccc-----c-C----HHHhhhcCCCCEEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GT---KMVGGVTPKKGGTE---HLGLPVF-----N-T----VAEAKAETKANASAI  105 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~---~iv~~VnP~~~g~~---i~G~p~y-----~-s----l~dl~~~~~iDlaii  105 (331)
                      .+|+|+|+ |.+|+.+++.+.+. ++   +++ .+||...+.+   ..|++..     . +    ++.+..  +.|++|-
T Consensus        14 ~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~--~~DvVIN   89 (480)
T 2ph5_A           14 NRFVILGF-GCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLE--ENDFLID   89 (480)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCC--TTCEEEE
T ss_pred             CCEEEECc-CHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhc--CCCEEEE
Confidence            45889998 99999999887764 55   465 7787654332   1243322     2 2    334444  3499999


Q ss_pred             ecChhhHHHHHHHHHHcCCcE
Q 020101          106 YVPPPFAAAAILEAMEAELDL  126 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~Gi~~  126 (331)
                      ..++....++++.|+++|++.
T Consensus        90 ~s~~~~~l~Im~acleaGv~Y  110 (480)
T 2ph5_A           90 VSIGISSLALIILCNQKGALY  110 (480)
T ss_dssp             CCSSSCHHHHHHHHHHHTCEE
T ss_pred             CCccccCHHHHHHHHHcCCCE
Confidence            999999999999999999998

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.20  E-value=0.0097  Score=55.58  Aligned_cols=95  Identities=17%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------Cce--------ecCcccccCHHHhhhcCCCCEEEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTE--------HLGLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g~~--------i~G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      ....+|+|+|+ |.+|..+...|.+.|+++....++...      |-.        ...+++..+.+++ +  +.|++++
T Consensus        17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vil   92 (318)
T 3hwr_A           17 FQGMKVAIMGA-GAVGCYYGGMLARAGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAV-Q--GADLVLF   92 (318)
T ss_dssp             ---CEEEEESC-SHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGG-T--TCSEEEE
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-C--CCCEEEE
Confidence            34567899999 999999999999889886633333210      000        1122334556554 3  6899999


Q ss_pred             ecChhhHHHHHHHHHHc-C-CcEEEEecCCCChhH
Q 020101          106 YVPPPFAAAAILEAMEA-E-LDLVVCITEGIPQHD  138 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~-G-i~~ivi~t~G~~e~~  138 (331)
                      ++|+....+++++.... + -..++.++.|+..++
T Consensus        93 avk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~  127 (318)
T 3hwr_A           93 CVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD  127 (318)
T ss_dssp             CCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred             EcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence            99999998888876542 1 134566889997543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.17  E-value=0.009  Score=54.65  Aligned_cols=92  Identities=12%  Similarity=0.094  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--cCcccc------------cCHHHhhhc-CCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF------------NTVAEAKAE-TKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~G~p~y------------~sl~dl~~~-~~iDlaii~  106 (331)
                      ++|+|||+ |++|..+...|.+.|++++ .++++... +.+  .|+...            .+.+++.+. .+.|+++++
T Consensus         4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~   81 (316)
T 2ew2_A            4 MKIAIAGA-GAMGSRLGIMLHQGGNDVT-LIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL   81 (316)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence            57899999 9999999999999999876 66664310 010  132211            122333210 168999999


Q ss_pred             cChhhHHHHHHHHHHc-C-CcEEEEecCCCCh
Q 020101          107 VPPPFAAAAILEAMEA-E-LDLVVCITEGIPQ  136 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~-G-i~~ivi~t~G~~e  136 (331)
                      +|+....+++++.... + -+.++.++.|+..
T Consensus        82 v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           82 TKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             SCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             eccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            9999988888776543 2 2345556778863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.17  E-value=0.0019  Score=59.75  Aligned_cols=115  Identities=16%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCccc--ccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~--y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      +..+|.|+|+ |++|+.+++.+..+|.+++ .+||.....+   ..|...  +.+++++..  +.|++++++|.....+.
T Consensus       154 ~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDvVi~~~p~~~i~~~  229 (293)
T 3d4o_A          154 HGANVAVLGL-GRVGMSVARKFAALGAKVK-VGARESDLLARIAEMGMEPFHISKAAQELR--DVDVCINTIPALVVTAN  229 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTSEEEEGGGHHHHTT--TCSEEEECCSSCCBCHH
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecChhhHHHHhc--CCCEEEECCChHHhCHH
Confidence            3567899998 9999999999999999876 7777641111   134443  356777776  79999999997543222


Q ss_pred             HHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 020101          116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP  165 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi-GPnc~Gi~~p  165 (331)
                      .-+..+.| ..+++++.|-...+.    +.+ ++.|++++ -||..+.+.|
T Consensus       230 ~l~~mk~~-~~lin~ar~~~~~~~----~~a-~~~Gv~~~~~~~l~~~v~p  274 (293)
T 3d4o_A          230 VLAEMPSH-TFVIDLASKPGGTDF----RYA-EKRGIKALLVPGLPGIVAP  274 (293)
T ss_dssp             HHHHSCTT-CEEEECSSTTCSBCH----HHH-HHHTCEEEECCCHHHHHCH
T ss_pred             HHHhcCCC-CEEEEecCCCCCCCH----HHH-HHCCCEEEECCCCCcccCH
Confidence            22223333 234445544322222    223 45677765 4665555544

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.17  E-value=0.0049  Score=59.91  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v  116 (331)
                      +..+|.|||. |++|+.+++.++.+|++++ ..|+.....+   ..|+..+.+++++..  +.|++++++|.. ....++
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~~~~~~~~~~G~~~~~~l~ell~--~aDvV~l~~Plt~~t~~li  265 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLHPETEHMI  265 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCCTTTTTCB
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EEcCCccchhhHhhcCceecCCHHHHHh--cCCEEEEecCCchHHHHHh
Confidence            4567899999 9999999999999999977 7777642121   246666678999987  789999999953 223333


Q ss_pred             -HHHHH-cCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 -LEAME-AELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 -~~~~~-~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                       ++.++ .+-.. +|+.+.|- --+...|.++. ++..+.
T Consensus       266 ~~~~l~~mk~gailIN~aRG~-~vde~aL~~aL-~~g~i~  303 (393)
T 2nac_A          266 NDETLKLFKRGAYIVNTARGK-LCDRDAVARAL-ESGRLA  303 (393)
T ss_dssp             SHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHH-HTTSEE
T ss_pred             hHHHHhhCCCCCEEEECCCch-HhhHHHHHHHH-HcCCee
Confidence             22222 23333 34444442 22334455555 454443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.16  E-value=0.018  Score=56.84  Aligned_cols=102  Identities=23%  Similarity=0.236  Sum_probs=65.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee-c--------------------C-cccccCHHHhhhc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-L--------------------G-LPVFNTVAEAKAE   97 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i-~--------------------G-~p~y~sl~dl~~~   97 (331)
                      -+++++|||. |.||......|.+.|++++ ++|.+... +.+ .                    | +..-.++++..+ 
T Consensus         7 ~~~~~~vIGl-G~vG~~~A~~La~~G~~V~-~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~-   83 (446)
T 4a7p_A            7 GSVRIAMIGT-GYVGLVSGACFSDFGHEVV-CVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVK-   83 (446)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHT-
T ss_pred             CceEEEEEcC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHh-
Confidence            4789999999 9999999999999999977 54443310 110 1                    1 334456766666 


Q ss_pred             CCCCEEEEecChh-----------hHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHH
Q 020101           98 TKANASAIYVPPP-----------FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus        98 ~~iDlaii~vp~~-----------~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                       +.|++++++|..           .+.++++...+. .-..+|+..++++....+++.+..
T Consensus        84 -~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l  143 (446)
T 4a7p_A           84 -DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERII  143 (446)
T ss_dssp             -TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHH
T ss_pred             -cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHH
Confidence             789999996654           367777666543 223445556677665555555444

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.15  E-value=0.00038  Score=63.88  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      ++|+|||+ |+||+.+.+.+.+. ++++..+|++... +   +..|. .+.+++++.+  +.|++++++|++.+.+++++
T Consensus         3 m~I~iIG~-G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~--~~DvVilav~~~~~~~v~~~   77 (276)
T 2i76_A            3 LVLNFVGT-GTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPE--LNGVVFVIVPDRYIKTVANH   77 (276)
T ss_dssp             -CCEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHTT
T ss_pred             ceEEEEeC-CHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHh--cCCEEEEeCChHHHHHHHHH
Confidence            46889999 99999999888776 7764456665410 1   12355 6667777665  68999999999998888876


Q ss_pred             HHHcCCcEEEEecCCCChh
Q 020101          119 AMEAELDLVVCITEGIPQH  137 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~~e~  137 (331)
                      +...+ +.++..+.+++.+
T Consensus        78 l~~~~-~ivi~~s~~~~~~   95 (276)
T 2i76_A           78 LNLGD-AVLVHCSGFLSSE   95 (276)
T ss_dssp             TCCSS-CCEEECCSSSCGG
T ss_pred             hccCC-CEEEECCCCCcHH
Confidence            54122 3334444466544

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.14  E-value=0.017  Score=52.82  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-------ecCcccccCHHHhhhcCCCCEEEEecCh------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------HLGLPVFNTVAEAKAETKANASAIYVPP------  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-------i~G~p~y~sl~dl~~~~~iDlaii~vp~------  109 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++....... ..       ...+. ..+++++.+  ++|++|-+...      
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~Dl~-~~~~~~~~~--~~d~Vih~a~~~~~~~~   78 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-KAINDYEYRVSDYT-LEDLINQLN--DVDAVVHLAATRGSQGK   78 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTT--TCSEEEECCCCCCSSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-ccCCceEEEEcccc-HHHHHHhhc--CCCEEEEccccCCCCCh
Confidence            468899999999999999999999998855433111 11       12333 445666666  79999977542      


Q ss_pred             --------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                              .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           79 ISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                    23467788888899998776664

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.14  E-value=0.0059  Score=57.99  Aligned_cols=105  Identities=14%  Similarity=0.150  Sum_probs=66.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v-  116 (331)
                      +..+|.|||. |++|+.+++.++.+|++++ .+||.....  ...|+. +.+++++..  +.|++++++|... ...++ 
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li~  238 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGMKTI-GYDPIISPEVSASFGVQ-QLPLEEIWP--LCDFITVHTPLLPSTTGLLN  238 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSSCHHHHHHTTCE-ECCHHHHGG--GCSEEEECCCCCTTTTTSBC
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCce-eCCHHHHHh--cCCEEEEecCCCHHHHHhhC
Confidence            4567899999 9999999999999999987 788865211  123553 458999887  7899999999754 33333 


Q ss_pred             HHHHH-cCCcEE-EEecCCCChhHHHHHHHHHhccCCc
Q 020101          117 LEAME-AELDLV-VCITEGIPQHDMVRVKAALNNQSKT  152 (331)
Q Consensus       117 ~~~~~-~Gi~~i-vi~t~G~~e~~~~~l~~~a~~~~gi  152 (331)
                      ++.++ .+-..+ ++.+.|-. -+..+|.+.. ++..+
T Consensus       239 ~~~l~~mk~gailIN~arg~v-vd~~aL~~aL-~~g~i  274 (335)
T 2g76_A          239 DNTFAQCKKGVRVVNCARGGI-VDEGALLRAL-QSGQC  274 (335)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS-BCHHHHHHHH-HHTSE
T ss_pred             HHHHhhCCCCcEEEECCCccc-cCHHHHHHHH-HhCCc
Confidence            22222 233333 44455532 2334455544 44443

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.13  E-value=0.0062  Score=58.10  Aligned_cols=64  Identities=17%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|.|||. |++|+.+++.++.+|++++ ++||... ....+.-.|.+++++..  +.|++++++|.
T Consensus       147 ~gktvgIiGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDvV~l~~Pl  210 (343)
T 2yq5_A          147 YNLTVGLIGV-GHIGSAVAEIFSAMGAKVI-AYDVAYN-PEFEPFLTYTDFDTVLK--EADIVSLHTPL  210 (343)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-GGGTTTCEECCHHHHHH--HCSEEEECCCC
T ss_pred             CCCeEEEEec-CHHHHHHHHHHhhCCCEEE-EECCChh-hhhhccccccCHHHHHh--cCCEEEEcCCC
Confidence            3457899999 9999999999999999987 7887652 22222234558999987  68999999994

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.13  E-value=0.0037  Score=58.20  Aligned_cols=90  Identities=10%  Similarity=0.034  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-e------------cCcccc-------cCHHHhhhcCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H------------LGLPVF-------NTVAEAKAETKA  100 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i------------~G~p~y-------~sl~dl~~~~~i  100 (331)
                      +..+|+|.|++|-+|+.+++.|.+.|+++++.......... .            .++..+       .+++++.+  ++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--GV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--CC
Confidence            45789999999999999999999999998855432211010 0            122222       23555555  79


Q ss_pred             CEEEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          101 NASAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       101 Dlaii~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      |++|-+...                  .....+++.|.+.|++.+|.+++
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  151 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS  151 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            999977642                  11334788888899988776654

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=96.13  E-value=0.008  Score=58.24  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=69.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-C-CeEEEE-eCCCCC---------C-ce--ecC---------------cccc---
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-G-TKMVGG-VTPKKG---------G-TE--HLG---------------LPVF---   88 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g-~~iv~~-VnP~~~---------g-~~--i~G---------------~p~y---   88 (331)
                      .++|+|+|+||.+|+.+++.+.++ + |++++. .+.+..         + +.  +..               ..++   
T Consensus         4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~   83 (388)
T 1r0k_A            4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   83 (388)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence            378999999999999999988875 4 787744 332210         0 00  011               1111   


Q ss_pred             cCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEE
Q 020101           89 NTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        89 ~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~vi  155 (331)
                      ..+.++.... +|+++.+++.........+|+++|.+. + ....-+. .....+.+.| +++|+.++
T Consensus        84 ~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~V-v-lANKE~lv~~G~~l~~~A-~~~gv~li  147 (388)
T 1r0k_A           84 DALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTV-A-LANKESLVSAGGLMIDAV-REHGTTLL  147 (388)
T ss_dssp             HHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEE-E-ECCSHHHHTTHHHHHHHH-HHHTCEEE
T ss_pred             cHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEE-E-EeCcHHHHhhHHHHHHHH-HHcCCEEE
Confidence            1133455545 999999998888888889999999775 3 2333111 1234566666 78887775

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.08  E-value=0.023  Score=52.76  Aligned_cols=90  Identities=10%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------Cceec---------CcccccCHHHhhhcCCCCEEEEec
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GTEHL---------GLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g~~i~---------G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+|+|+|+ |.+|..+...|.+.|.++. .++++..      |-.+.         .++++.+.+++ .  +.|++++++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~-~--~~D~vilav   77 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGEDVH-FLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEI-G--PMDLVLVGL   77 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSCCEE-EECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHHH-C--CCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCeEE-EEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHHc-C--CCCEEEEec
Confidence            46889999 9999999999998888866 5554421      10111         12334566664 3  689999999


Q ss_pred             ChhhHHHHHHHHHHc-C-CcEEEEecCCCChh
Q 020101          108 PPPFAAAAILEAMEA-E-LDLVVCITEGIPQH  137 (331)
Q Consensus       108 p~~~~~~~v~~~~~~-G-i~~ivi~t~G~~e~  137 (331)
                      |+....++++++... + -..++.++.|+..+
T Consensus        78 k~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~  109 (312)
T 3hn2_A           78 KTFANSRYEELIRPLVEEGTQILTLQNGLGNE  109 (312)
T ss_dssp             CGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH
T ss_pred             CCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH
Confidence            999998888887543 2 23556688899643

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.0081  Score=58.31  Aligned_cols=94  Identities=13%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCC--------e-EEEEeCCCCCCc--------------------eecCccccc
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGT--------K-MVGGVTPKKGGT--------------------EHLGLPVFN   89 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~--------~-iv~~VnP~~~g~--------------------~i~G~p~y~   89 (331)
                      .+|+.||+|+|+ |.+|+++...+.+.|.        + .++.-++....+                    --..+...+
T Consensus        31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~  109 (391)
T 4fgw_A           31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANP  109 (391)
T ss_dssp             --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEES
T ss_pred             cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeC
Confidence            467789999999 9999999887765431        2 222333321100                    012345566


Q ss_pred             CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcC--CcEEEEecCCCC
Q 020101           90 TVAEAKAETKANASAIYVPPPFAAAAILEAMEAE--LDLVVCITEGIP  135 (331)
Q Consensus        90 sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~G--i~~ivi~t~G~~  135 (331)
                      ++++..+  +.|++|+++|.+...+++++....-  -..+|..+-|+.
T Consensus       110 dl~~al~--~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          110 DLIDSVK--DVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             CHHHHHT--TCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             CHHHHHh--cCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence            7888887  7999999999999999999876431  233455777884

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.06  E-value=0.0019  Score=58.75  Aligned_cols=103  Identities=15%  Similarity=0.079  Sum_probs=65.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHH---
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA---  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~---  113 (331)
                      +. +|+|+|+ |.+|+.+.+.+.+.|++++ .+|++... ++   ..|.. +.+++++ .  +.|+++.++|+..++   
T Consensus       116 ~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~-v~~r~~~~~~~l~~~~~~~-~~~~~~~-~--~~Divi~~tp~~~~~~~~  188 (263)
T 2d5c_A          116 KG-PALVLGA-GGAGRAVAFALREAGLEVW-VWNRTPQRALALAEEFGLR-AVPLEKA-R--EARLLVNATRVGLEDPSA  188 (263)
T ss_dssp             CS-CEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHHTCE-ECCGGGG-G--GCSEEEECSSTTTTCTTC
T ss_pred             CC-eEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHhccc-hhhHhhc-c--CCCEEEEccCCCCCCCCC
Confidence            45 7899999 8999999999999888654 78876411 11   12444 6678787 5  799999999988643   


Q ss_pred             HHH-HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          114 AAI-LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       114 ~~v-~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ..+ .++++.|. .++-+..+ +.+.  ++.+.+ ++.|++++
T Consensus       189 ~~l~~~~l~~g~-~viD~~~~-p~~t--~l~~~a-~~~g~~~v  226 (263)
T 2d5c_A          189 SPLPAELFPEEG-AAVDLVYR-PLWT--RFLREA-KAKGLKVQ  226 (263)
T ss_dssp             CSSCGGGSCSSS-EEEESCCS-SSSC--HHHHHH-HHTTCEEE
T ss_pred             CCCCHHHcCCCC-EEEEeecC-Cccc--HHHHHH-HHCcCEEE
Confidence            222 23333443 22333333 2222  355555 66788877

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.03  E-value=0.0064  Score=56.91  Aligned_cols=66  Identities=14%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|.|||. |++|+.+.+.+...|++++ .+||....+  ...|+.. .+++++..  +.|++++++|...
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~ell~--~aDvV~l~~p~~~  208 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGMNIL-LYDPYPNEERAKEVNGKF-VDLETLLK--ESDVVTIHVPLVE  208 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCEE-CCHHHHHH--HCSEEEECCCCST
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHhhcCccc-cCHHHHHh--hCCEEEEecCCCh
Confidence            3457899999 9999999999999999977 788765211  1235543 47988887  6899999999643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.02  E-value=0.0062  Score=57.64  Aligned_cols=66  Identities=12%  Similarity=0.204  Sum_probs=50.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ...+|+|||+ |++|+.+++.+...|++++ .+|+....+.  ..|+. +.+++++..  +.|++++++|...
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~~~l~--~aDvVil~vp~~~  216 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNMRIL-YYSRTRKEEVERELNAE-FKPLEDLLR--ESDFVVLAVPLTR  216 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHCCE-ECCHHHHHH--HCSEEEECCCCCT
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCCEEE-EECCCcchhhHhhcCcc-cCCHHHHHh--hCCEEEECCCCCh
Confidence            3457899999 9999999999999999977 7787652111  13444 458888877  6899999999865

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.02  E-value=0.015  Score=51.24  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEe-CCCCCCcee--cCcccc-------cCHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGGTEH--LGLPVF-------NTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~V-nP~~~g~~i--~G~p~y-------~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|+|.|++|.+|+.+++.|.+.| ++++... ++... .+.  .++..+       .+++++.+  .+|++|.+....
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a~~~   99 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-HKPYPTNSQIIMGDVLNHAALKQAMQ--GQDIVYANLTGE   99 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS-CSSCCTTEEEEECCTTCHHHHHHHHT--TCSEEEEECCST
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh-cccccCCcEEEEecCCCHHHHHHHhc--CCCEEEEcCCCC
Confidence            4678899999999999999999998 7876432 32211 110  122222       23555555  789999776543


Q ss_pred             ----hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ----FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ----~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                          .+..+++.+.+.|++.+|.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~iV~iSS  125 (236)
T 3qvo_A          100 DLDIQANSVIAAMKACDVKRLIFVLS  125 (236)
T ss_dssp             THHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             chhHHHHHHHHHHHHcCCCEEEEEec
Confidence                2445677777888888887776

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=96.02  E-value=0.02  Score=55.05  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEE---------------eCCCCCCceecCccccc-----------CHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGG---------------VTPKKGGTEHLGLPVFN-----------TVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~---------------VnP~~~g~~i~G~p~y~-----------sl~dl~   95 (331)
                      ++|+|+|++|.+|+..++.+.++ .|++++.               .+|+..  .+..-..|.           .+.++.
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v--~v~~~~~~~~~l~~~~~G~~~l~el~   81 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNV--AITGDVEFEDSSINVWKGSHSIEEML   81 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEE--EECSSCCCCCSSSEEEESTTHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEE--EEccHHHHHHHHHHHccCHHHHHHHh
Confidence            67899999999999999988886 6888865               233221  111112221           134555


Q ss_pred             hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCCh-hHHHHHHHHHhccCCcEEE
Q 020101           96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e-~~~~~l~~~a~~~~gi~vi  155 (331)
                      ...++|+++.+++......-...++++|.+. . ++..-+- .....+.+.+ +++|.+++
T Consensus        82 ~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~v-a-LANKEsLV~aG~li~~~a-~~~g~~ll  139 (376)
T 3a06_A           82 EALKPDITMVAVSGFSGLRAVLASLEHSKRV-C-LANKESLVCGGFLVKKKL-KEKGTELI  139 (376)
T ss_dssp             HHHCCSEEEECCCSTTHHHHHHHHHHHCSEE-E-ECCSHHHHHHHHHHHHHH-HHHCCEEE
T ss_pred             cCCCCCEEEEEeeCHHHHHHHHHHHHCCCEE-E-EeChHHHHhhHHHHHHHH-HHcCCEEE
Confidence            4346999999999999999999999999765 3 3444110 1223455555 67777765

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.01  E-value=0.0063  Score=58.87  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=49.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|.|||. |++|+.+++.+..+|++++ +.||..  +...+...+.+++++.+  +.|++++++|-.
T Consensus       119 gktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~--~~~~~~~~~~sl~ell~--~aDiV~l~~Plt  181 (381)
T 3oet_A          119 DRTIGIVGV-GNVGSRLQTRLEALGIRTL-LCDPPR--AARGDEGDFRTLDELVQ--EADVLTFHTPLY  181 (381)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHH--HHTTCCSCBCCHHHHHH--HCSEEEECCCCC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCh--HHhccCcccCCHHHHHh--hCCEEEEcCcCC
Confidence            456889999 9999999999999999987 778753  22212335778999987  689999999943

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.99  E-value=0.0047  Score=59.20  Aligned_cols=87  Identities=15%  Similarity=0.079  Sum_probs=62.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC---------ce-----------------ecC--ccccc--C
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVFN--T   90 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g---------~~-----------------i~G--~p~y~--s   90 (331)
                      .++|+|+|+ |+.|+.++|.+.+. .+++++..+|...-         ++                 +.|  ++++.  +
T Consensus        17 ~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d   95 (354)
T 3cps_A           17 QGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD   95 (354)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred             ceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence            478999999 99999999998886 78998655553210         01                 111  23342  4


Q ss_pred             HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      .++++- +.++|+++.++|.....+.+...++.|+|.+||
T Consensus        96 p~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVI  135 (354)
T 3cps_A           96 PAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVII  135 (354)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred             hHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEE
Confidence            555541 126899999999999999999999999987665

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.97  E-value=0.026  Score=51.18  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC-CC----Cc-------eecCcccc-------cCHHHhhhcCCCCEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KG----GT-------EHLGLPVF-------NTVAEAKAETKANAS  103 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~-~~----g~-------~i~G~p~y-------~sl~dl~~~~~iDla  103 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++.+... ..    .+       ...|+.++       .++.++.+  ++|++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~v   80 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QVDIV   80 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred             cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CCCEE
Confidence            4588999999999999999999899877544322 00    00       01233222       23555555  79999


Q ss_pred             EEecCh---hhHHHHHHHHHHcC-CcEEEEec
Q 020101          104 AIYVPP---PFAAAAILEAMEAE-LDLVVCIT  131 (331)
Q Consensus       104 ii~vp~---~~~~~~v~~~~~~G-i~~ivi~t  131 (331)
                      |.+.+.   .....+++.|.+.| ++.++ ++
T Consensus        81 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v-~S  111 (307)
T 2gas_A           81 ICAAGRLLIEDQVKIIKAIKEAGNVKKFF-PS  111 (307)
T ss_dssp             EECSSSSCGGGHHHHHHHHHHHCCCSEEE-CS
T ss_pred             EECCcccccccHHHHHHHHHhcCCceEEe-ec
Confidence            988763   55677888888898 99865 44

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.95  E-value=0.0078  Score=57.30  Aligned_cols=90  Identities=16%  Similarity=0.050  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH---c-CCeEEEEeCC----------CCC---C----------ce--ecC--cccc--c
Q 020101           43 TRVICQGITGKNGTFHTEQAIE---Y-GTKMVGGVTP----------KKG---G----------TE--HLG--LPVF--N   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~---~-g~~iv~~VnP----------~~~---g----------~~--i~G--~p~y--~   89 (331)
                      +||+|+|+ |+.|+.+++.+.+   . ++++++..+.          +++   |          +.  +.|  ++++  .
T Consensus         3 ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~   81 (339)
T 2x5j_O            3 VRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER   81 (339)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             eEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence            68999999 9999999999887   5 7888854443          000   0          00  122  2333  2


Q ss_pred             CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 020101           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus        90 sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      +.++++- +.++|+++.++|.....+.+...+++|+|.+||=.++
T Consensus        82 dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           82 SLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             SGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence            4555541 1268999999999999999999999999986653344

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.95  E-value=0.0066  Score=57.49  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=64.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-cCcccccCHHHhhhcCCCCEEEEecChhh-HHHHH-HH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAI-LE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~v-~~  118 (331)
                      ..+|.|||. |++|+.+++.+..+|++++ .+||... +.. .+.....+++++..  ..|++++++|... ...++ ++
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~~l~ell~--~aDvV~l~~p~~~~t~~li~~~  220 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRN-PELEKKGYYVDSLDDLYK--QADVISLHVPDVPANVHMINDE  220 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-HHHHHTTCBCSCHHHHHH--HCSEEEECSCCCGGGTTCBSHH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-hhHHhhCeecCCHHHHHh--hCCEEEEcCCCcHHHHHHHhHH
Confidence            456889999 9999999999999999977 7887652 111 12332338989887  6899999999533 22222 11


Q ss_pred             H-HHcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          119 A-MEAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       119 ~-~~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      . ...+-.. +++.+.|- -.+...|.++. ++.++.
T Consensus       221 ~l~~mk~ga~lIn~arg~-~vd~~aL~~aL-~~g~i~  255 (333)
T 1j4a_A          221 SIAKMKQDVVIVNVSRGP-LVDTDAVIRGL-DSGKIF  255 (333)
T ss_dssp             HHHHSCTTEEEEECSCGG-GBCHHHHHHHH-HHTSEE
T ss_pred             HHhhCCCCcEEEECCCCc-ccCHHHHHHHH-HhCCce
Confidence            1 2223233 34444442 22334555555 455544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.95  E-value=0.021  Score=51.81  Aligned_cols=89  Identities=22%  Similarity=0.079  Sum_probs=58.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEe-CCCCCC-c--eecCcccc-------cCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV-TPKKGG-T--EHLGLPVF-------NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~V-nP~~~g-~--~i~G~p~y-------~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +.+|+|.|++|.+|+.+++.|.+.| +++++.. +|.... .  ...|+.++       .+++++.+  ++|.++.+.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--GAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--cCCEEEEeCCC
Confidence            3568899999999999999999888 8887543 332200 0  01133222       23555555  79999988753


Q ss_pred             h----------hHHHHHHHHHHcCCcEEEEecC
Q 020101          110 P----------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ~----------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .          ....+++.|.+.|++.++..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~  115 (299)
T 2wm3_A           83 WESCSQEQEVKQGKLLADLARRLGLHYVVYSGL  115 (299)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             CccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            1          3456778888899998776443

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.94  E-value=0.024  Score=51.47  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--c---------eecCcccc-------cCHHHhhhcCCCCEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--T---------EHLGLPVF-------NTVAEAKAETKANASA  104 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~---------~i~G~p~y-------~sl~dl~~~~~iDlai  104 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++.+......  .         ...|+.++       .++.++.+  ++|+++
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~vi   82 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVVI   82 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc--CCCEEE
Confidence            4588999999999999999999999887544321100  0         01233322       23555555  799999


Q ss_pred             EecCh---hhHHHHHHHHHHcC-CcEEEEecC
Q 020101          105 IYVPP---PFAAAAILEAMEAE-LDLVVCITE  132 (331)
Q Consensus       105 i~vp~---~~~~~~v~~~~~~G-i~~ivi~t~  132 (331)
                      .+.+.   .....+++.|.+.| ++.++ ++.
T Consensus        83 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v-~S~  113 (308)
T 1qyc_A           83 STVGSLQIESQVNIIKAIKEVGTVKRFF-PSE  113 (308)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHCCCSEEE-CSC
T ss_pred             ECCcchhhhhHHHHHHHHHhcCCCceEe-ecc
Confidence            88765   34567888888898 99865 443

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.92  E-value=0.0058  Score=56.25  Aligned_cols=91  Identities=12%  Similarity=0.074  Sum_probs=59.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-----C-CeEEEEeCCCCCCce--e-cCcccc--------------cCHHHhhhc
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-----G-TKMVGGVTPKKGGTE--H-LGLPVF--------------NTVAEAKAE   97 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-----g-~~iv~~VnP~~~g~~--i-~G~p~y--------------~sl~dl~~~   97 (331)
                      +.++|+|+|+ |.||..+...|.+.     | ++++ .+++...-+.  - .|+.+.              .+.++ .+ 
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-   82 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS-WIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE-VG-   82 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE-EECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHH-HC-
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE-EEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccc-cC-
Confidence            3468999999 99999999998887     8 8776 6665210001  1 344332              23333 33 


Q ss_pred             CCCCEEEEecChhhHHHHHHHHHHc-CC-cEEEEecCCCCh
Q 020101           98 TKANASAIYVPPPFAAAAILEAMEA-EL-DLVVCITEGIPQ  136 (331)
Q Consensus        98 ~~iDlaii~vp~~~~~~~v~~~~~~-Gi-~~ivi~t~G~~e  136 (331)
                       +.|++++++|+..+.+++++.... +- +.++.++.|+..
T Consensus        83 -~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           83 -TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             -CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             -CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence             689999999999998888776542 11 234556788854

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.90  E-value=0.016  Score=55.15  Aligned_cols=86  Identities=14%  Similarity=0.036  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCC-------------CCCc----------e--ecC--ccccc--C
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPK-------------KGGT----------E--HLG--LPVFN--T   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~-------------~~g~----------~--i~G--~p~y~--s   90 (331)
                      +||+|+|+ |++|+.+++.+.+.   ++++++..++.             ..|+          .  +.|  ++++.  +
T Consensus         3 ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (339)
T 3b1j_A            3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (339)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             eEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence            68999999 99999999998876   37888544330             0010          1  123  33432  5


Q ss_pred             HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      .++++- +.++|+++.++|.....+.+...+++|++.+|+
T Consensus        82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVI  121 (339)
T 3b1j_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI  121 (339)
T ss_dssp             GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence            666652 137999999999999999999999999998665

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.90  E-value=0.0069  Score=58.14  Aligned_cols=107  Identities=18%  Similarity=0.195  Sum_probs=67.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAA  115 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~  115 (331)
                      +..+|.|||. |++|+.+++.+..+|++ ++ ..|+.....+   ..|+..+.+++++..  +.|++++++|.. ....+
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~~P~t~~t~~l  238 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNPKELL-YYDYQALPKDAEEKVGARRVENIEELVA--QADIVTVNAPLHAGTKGL  238 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCSEEE-EECSSCCCHHHHHHTTEEECSSHHHHHH--TCSEEEECCCCSTTTTTC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCcEEE-EECCCccchhHHHhcCcEecCCHHHHHh--cCCEEEECCCCChHHHHH
Confidence            4567899999 99999999999999997 77 7776542111   246655668999987  799999999985 22233


Q ss_pred             H-HHHH-HcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          116 I-LEAM-EAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       116 v-~~~~-~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      + ++.+ ..+-.. +++.+.|- --+...|.+.. ++.++.
T Consensus       239 i~~~~l~~mk~ga~lIn~arG~-~vd~~aL~~aL-~~g~i~  277 (364)
T 2j6i_A          239 INKELLSKFKKGAWLVNTARGA-ICVAEDVAAAL-ESGQLR  277 (364)
T ss_dssp             BCHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHH-HHTSEE
T ss_pred             hCHHHHhhCCCCCEEEECCCCc-hhCHHHHHHHH-HcCCCc
Confidence            3 1222 223333 34444442 12334455554 455544

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.88  E-value=0.043  Score=54.36  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-cee--c-------------------CcccccCHHHhhhc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-TEH--L-------------------GLPVFNTVAEAKAE   97 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~~i--~-------------------G~p~y~sl~dl~~~   97 (331)
                      ..+|+|||+ |.+|......|.+.  |++++ ++|.+... +.+  .                   ++....++++... 
T Consensus         9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~-~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~-   85 (481)
T 2o3j_A            9 VSKVVCVGA-GYVGGPTCAMIAHKCPHITVT-VVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIA-   85 (481)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhh-
Confidence            357999999 99999999988887  78877 66654310 000  1                   1233345555555 


Q ss_pred             CCCCEEEEecChh---------------hHHHHHHHHHHc-CCcEEEEecCCCChhHHHHHHHHH
Q 020101           98 TKANASAIYVPPP---------------FAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus        98 ~~iDlaii~vp~~---------------~~~~~v~~~~~~-Gi~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                       +.|++++++|..               .+.++++..... .-..+|+..+..+....+++.+..
T Consensus        86 -~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l  149 (481)
T 2o3j_A           86 -EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCIL  149 (481)
T ss_dssp             -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHH
T ss_pred             -cCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHH
Confidence             589999998753               256666655542 334555554455443334444444

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=95.86  E-value=0.019  Score=54.86  Aligned_cols=163  Identities=15%  Similarity=0.111  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCCCcHHHHH---HHHc-CCeEEEEeCCCCCCcee-------cCcccccCHHHhhhcCCCCEEEEecCh--
Q 020101           43 TRVICQGITGKNGTFHTEQ---AIEY-GTKMVGGVTPKKGGTEH-------LGLPVFNTVAEAKAETKANASAIYVPP--  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~---l~~~-g~~iv~~VnP~~~g~~i-------~G~p~y~sl~dl~~~~~iDlaii~vp~--  109 (331)
                      .+++|.+- |.+|+...|.   +.++ ++++++.+|....|++.       .|+|++.|++++.+. ++|++++.+.|  
T Consensus         8 ~~~vi~~~-g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~~~gipi~~~l~~al~~-~~d~lvig~a~~g   85 (349)
T 2obn_A            8 QRVAILLH-EGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEY-KPQVLVIGIAPKG   85 (349)
T ss_dssp             CCEEEECT-TTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCCCSCCCEESSHHHHGGG-CCSEEEECCCCCC
T ss_pred             CcEEEEeC-CCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCCcCCCCccCCHHHHHhC-CCCEEEEEecCCC
Confidence            34555654 6666544443   3544 78999999988776543       359999999999853 79999999822  


Q ss_pred             ----hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEE
Q 020101          110 ----PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGI  185 (331)
Q Consensus       110 ----~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~val  185 (331)
                          +...+.+.+|+++|... +..- .....+..++.++| ++ |..+..=.-    +|..+....-.......-.+-+
T Consensus        86 G~l~~~~~~~i~~Al~~G~~V-vsgl-h~~l~~~pel~~~A-~~-g~~i~dvr~----pp~~l~~~~g~~~~v~~k~i~v  157 (349)
T 2obn_A           86 GGIPDDYWIELKTALQAGMSL-VNGL-HTPLANIPDLNALL-QP-GQLIWDVRK----EPANLDVASGAARTLPCRRVLT  157 (349)
T ss_dssp             C-SCGGGHHHHHHHHHTTCEE-EECS-SSCCTTCHHHHHHC-CT-TCCEEETTC----CCSSCCCCCSGGGGCSSEEEEE
T ss_pred             CCCCHHHHHHHHHHHHcCCcE-EeCc-cchhhCCHHHHHHH-Hc-CCEEEEecc----CcccccccccceeeecceEEEE
Confidence                46678899999999986 4222 22222323466666 67 888775331    1212211100000011112444


Q ss_pred             EecChH-----HHHHHHHHHHhCCCCceEEEecCCC
Q 020101          186 VSRSGT-----LTYEAVFQTTAVGLGQSTCVGIGGD  216 (331)
Q Consensus       186 isQSG~-----~~~~~~~~~~~~g~g~s~~vs~Gn~  216 (331)
                      +.-.-+     .+..+...++++|+-..+ +.+|..
T Consensus       158 ~GTD~~VGK~~ts~~L~~~l~~~G~~a~~-~~tgqt  192 (349)
T 2obn_A          158 VGTDMAIGKMSTSLELHWAAKLRGWRSKF-LATGQT  192 (349)
T ss_dssp             EESSSSSSHHHHHHHHHHHHHHTTCCEEE-ECCSHH
T ss_pred             cCCCccccceeHHHHHHHHHHhcCCcEEE-Eeccch
Confidence            443322     234456677888875554 556643

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.86  E-value=0.029  Score=48.12  Aligned_cols=86  Identities=12%  Similarity=0.066  Sum_probs=49.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-e-cCccccc-CHH----HhhhcCCCCEEEEecCh-------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H-LGLPVFN-TVA----EAKAETKANASAIYVPP-------  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i-~G~p~y~-sl~----dl~~~~~iDlaii~vp~-------  109 (331)
                      +|+|.|++|.+|+.+++.|.+.|+++++. ..+..... . .++..+. ++.    +...  ++|++|.+...       
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~-~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~~~   78 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAI-VRNAGKITQTHKDINILQKDIFDLTLSDLS--DQNVVVDAYGISPDEAEK   78 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESCSHHHHHHCSSSEEEECCGGGCCHHHHT--TCSEEEECCCSSTTTTTS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEE-EcCchhhhhccCCCeEEeccccChhhhhhc--CCCEEEECCcCCccccch
Confidence            68899999999999999999999998744 33220000 0 1222221 222    2222  57777766543       


Q ss_pred             --hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        .....+++.|.+.|++.++++++
T Consensus        79 ~~~~~~~l~~a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           79 HVTSLDHLISVLNGTVSPRLLVVGG  103 (221)
T ss_dssp             HHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEec
Confidence              23344555555555655555543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.85  E-value=0.006  Score=57.62  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|+|||+ |++|+.+.+.+...|++++ .+|+.....+   ..|+... +++++..  +.|++++++|..
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~-~l~e~l~--~aDvVi~~vp~~  221 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGVQRF-LYTGRQPRPEEAAEFQAEFV-STPELAA--QSDFIVVACSLT  221 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCCEE-EEESSSCCHHHHHTTTCEEC-CHHHHHH--HCSEEEECCCCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcchhHHHhcCceeC-CHHHHHh--hCCEEEEeCCCC
Confidence            3457899999 9999999999999999976 6676542111   1344433 8888877  689999999975

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.83  E-value=0.0047  Score=58.74  Aligned_cols=86  Identities=15%  Similarity=0.076  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCC-------------CCCc----------e--ecC--ccccc--CHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK-------------KGGT----------E--HLG--LPVFN--TVA   92 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~-------------~~g~----------~--i~G--~p~y~--sl~   92 (331)
                      +||+|+|+ |+.|+.++|.+.+. .+++++..+..             ..|+          .  +.|  ++++.  +.+
T Consensus         2 ikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   80 (334)
T 3cmc_O            2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE   80 (334)
T ss_dssp             EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChh
Confidence            68999999 99999999998876 67888554431             1111          0  122  33442  455


Q ss_pred             Hhh-hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           93 EAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        93 dl~-~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++ .+.++|+++.++|.....+.+...+++|+|.+||
T Consensus        81 ~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI  118 (334)
T 3cmc_O           81 NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII  118 (334)
T ss_dssp             GCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence            554 1236999999999999999999999999987665

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.83  E-value=0.03  Score=51.34  Aligned_cols=84  Identities=13%  Similarity=0.199  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC-CC---Cc-------eecCcccc-------cCHHHhhhcCCCCEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-KG---GT-------EHLGLPVF-------NTVAEAKAETKANASA  104 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~-~~---g~-------~i~G~p~y-------~sl~dl~~~~~iDlai  104 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++..... ..   ..       ...++.++       .++.++.+  ++|+++
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d~vi   82 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVDIVI   82 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCCEEE
Confidence            4588999999999999999999999877544322 10   00       01133222       23555555  799999


Q ss_pred             EecCh---hhHHHHHHHHHHcC-CcEEE
Q 020101          105 IYVPP---PFAAAAILEAMEAE-LDLVV  128 (331)
Q Consensus       105 i~vp~---~~~~~~v~~~~~~G-i~~iv  128 (331)
                      .+...   .....+++.|.+.| ++.+|
T Consensus        83 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           83 SALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             ECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            88764   45677888898999 99866

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.82  E-value=0.029  Score=51.08  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--ce--------ecCcccc-------cCHHHhhhcCCCCEEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TE--------HLGLPVF-------NTVAEAKAETKANASAI  105 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~~--------i~G~p~y-------~sl~dl~~~~~iDlaii  105 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++.+......  +.        ..|+.++       .++.++.+  ++|+++.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~   82 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVVIS   82 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCEEEE
Confidence            4688999999999999999999999887544321100  00        1233222       23555555  7999998


Q ss_pred             ecCh-------hhHHHHHHHHHHcC-CcEEE
Q 020101          106 YVPP-------PFAAAAILEAMEAE-LDLVV  128 (331)
Q Consensus       106 ~vp~-------~~~~~~v~~~~~~G-i~~iv  128 (331)
                      +...       .....+++.|.+.| ++.+|
T Consensus        83 ~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           83 ALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             CCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            7753       35677888898999 99865

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.80  E-value=0.014  Score=55.08  Aligned_cols=65  Identities=17%  Similarity=0.267  Sum_probs=49.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ +.|+.... ....+...+.+++++..  +.|++++++|.
T Consensus       139 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~lPl  204 (324)
T 3hg7_A          139 KGRTLLILGT-GSIGQHIAHTGKHFGMKVL-GVSRSGRERAGFDQVYQLPALNKMLA--QADVIVSVLPA  204 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCCCTTCSEEECGGGHHHHHH--TCSEEEECCCC
T ss_pred             ccceEEEEEE-CHHHHHHHHHHHhCCCEEE-EEcCChHHhhhhhcccccCCHHHHHh--hCCEEEEeCCC
Confidence            4567899999 9999999999999999987 67765411 11222234578999988  79999999994

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.73  E-value=0.019  Score=53.17  Aligned_cols=91  Identities=15%  Similarity=0.057  Sum_probs=58.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC-C-ce-ecCcccccCHHHhhhcCCCCEEEEecCh-------
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-G-TE-HLGLPVFNTVAEAKAETKANASAIYVPP-------  109 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~-g-~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~-------  109 (331)
                      .+..+|+|.|++|-+|+.+++.|.+.|+++++....... + .. ...+.-..+++++.+  ++|+++-+...       
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~A~~~~~~~~~   94 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIM--GVSAVLHLGAFMSWAPAD   94 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHT--TCSEEEECCCCCCSSGGG
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHh--CCCEEEECCcccCcchhh
Confidence            345678999999999999999999999998854332210 0 11 112222234566666  79999966432       


Q ss_pred             ---------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ---------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ---------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                               .....+++.|.+.|++.+|.+++
T Consensus        95 ~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           95 RDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence                     12456788888899988777665

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.72  E-value=0.044  Score=47.92  Aligned_cols=89  Identities=12%  Similarity=0.062  Sum_probs=57.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEe-CCCCCCc-eecC-------cccccCHHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGV-TPKKGGT-EHLG-------LPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~V-nP~~~g~-~i~G-------~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|+  +++... ++..... ...+       +.-..+++++.+  ++|++|.+....
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~ag~~   95 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLGTT   95 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhc--CCCEEEECCCcc
Confidence            35688999999999999999999998  877432 3322100 0011       112233445554  799999876432


Q ss_pred             ---------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ---------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ---------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                     ....+++.|.+.+++.++.+++
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS  132 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS  132 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence                           2445667777888888777776

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=95.72  E-value=0.013  Score=55.62  Aligned_cols=89  Identities=12%  Similarity=-0.058  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC-------------CCCCc----------e--ecC--ccccc--CHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP-------------KKGGT----------E--HLG--LPVFN--TVAE   93 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP-------------~~~g~----------~--i~G--~p~y~--sl~d   93 (331)
                      +||+|+|+ |+.|+.+++.+.+.++++++.-++             +..|+          .  +.|  ++++.  +.++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~   79 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhh
Confidence            47899999 999999999887768888854443             11111          1  122  34442  4555


Q ss_pred             hhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           94 AKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        94 l~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++- +.++|+++.++|.....+.+...++.|.|.+|+-.+
T Consensus        80 l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsap  119 (331)
T 2g82_O           80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (331)
T ss_dssp             SCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             CcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCC
Confidence            542 236899999999999999999999999998776434

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.71  E-value=0.0037  Score=59.82  Aligned_cols=66  Identities=12%  Similarity=0.130  Sum_probs=52.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ +.||....+  ...|+..+.+++++..  +.|++++++|..
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDiV~l~~Plt  226 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVL-VWGRENSKERARADGFAVAESKDALFE--QSDVLSVHLRLN  226 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCCCS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EECCCCCHHHHHhcCceEeCCHHHHHh--hCCEEEEeccCc
Confidence            4567899999 9999999999999999987 778764101  1357766679999988  689999999853

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=95.71  E-value=0.0052  Score=59.46  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|.|||. |++|+.+++.+..+|++++ ..||... ..-.|. .+.+++++..  +.|++++++|...
T Consensus       115 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~g~-~~~~l~ell~--~aDvV~l~~Plt~  179 (380)
T 2o4c_A          115 AERTYGVVGA-GQVGGRLVEVLRGLGWKVL-VCDPPRQ-AREPDG-EFVSLERLLA--EADVISLHTPLNR  179 (380)
T ss_dssp             GGCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHHH-HHSTTS-CCCCHHHHHH--HCSEEEECCCCCS
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCChh-hhccCc-ccCCHHHHHH--hCCEEEEeccCcc
Confidence            3456899999 9999999999999999987 6787541 111233 4678999987  6899999998644

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=95.69  E-value=0.15  Score=48.79  Aligned_cols=144  Identities=20%  Similarity=0.199  Sum_probs=89.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-----------------------CCeEEEE--eCCCCCCcee------------
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-----------------------GTKMVGG--VTPKKGGTEH------------   82 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-----------------------g~~iv~~--VnP~~~g~~i------------   82 (331)
                      .+.+||+|||+ |+.|+.+++-+..+                       +++++++  ||+...|+.+            
T Consensus        13 ~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n~~~   91 (367)
T 1gr0_A           13 STEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTI   91 (367)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCC
T ss_pred             ccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCCchh
Confidence            46789999999 99999988744322                       2345654  7777766531            


Q ss_pred             ------------------cCcc------------cccCHHHhhhcCCCCEEEEecChhhHHH---HHHHHHHcCCcEEEE
Q 020101           83 ------------------LGLP------------VFNTVAEAKAETKANASAIYVPPPFAAA---AILEAMEAELDLVVC  129 (331)
Q Consensus        83 ------------------~G~p------------~y~sl~dl~~~~~iDlaii~vp~~~~~~---~v~~~~~~Gi~~ivi  129 (331)
                                        .|+.            .-.++.+..+++++|++|...|......   .+..|++.|+.- ++
T Consensus        92 ~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~~f-vN  170 (367)
T 1gr0_A           92 KIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAF-VN  170 (367)
T ss_dssp             CCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEE-EE
T ss_pred             hhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHHhCCcEEEEeeeCCCcCHHHHHHHHHHHcCCce-Ee
Confidence                              0111            1114555555677887777776543322   345677778875 77


Q ss_pred             ecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChHHH--HHHHHHHHhCCCCc
Q 020101          130 ITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLT--YEAVFQTTAVGLGQ  207 (331)
Q Consensus       130 ~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~--~~~~~~~~~~g~g~  207 (331)
                      +++-+.-.. ..+.+.+ +++|+.++|.+                          +=||+|+--  ..+...+..||+.+
T Consensus       171 ~~P~~~~~~-P~~~el~-~~~g~pi~GdD--------------------------~Ksq~G~T~~k~~La~~l~~rg~kv  222 (367)
T 1gr0_A          171 ALPVFIASD-PVWAKKF-TDARVPIVGDD--------------------------IKSQVGATITHRVLAKLFEDRGVQL  222 (367)
T ss_dssp             CSSCCSTTS-HHHHHHH-HHHTCEEEESS--------------------------BCCSSCHHHHHHHHHHHHHHTTCEE
T ss_pred             cCCccccCC-HHHHHHH-HHcCCCEeccc--------------------------cccccCCChHHHHHHHHHHHcCCce
Confidence            777654321 1234444 57778888855                          126777654  34668888999999


Q ss_pred             eEEEec
Q 020101          208 STCVGI  213 (331)
Q Consensus       208 s~~vs~  213 (331)
                      ..+.++
T Consensus       223 ~~~~q~  228 (367)
T 1gr0_A          223 DRTMQL  228 (367)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            988764

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.67  E-value=0.019  Score=55.51  Aligned_cols=86  Identities=14%  Similarity=0.044  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCC-------------CCCCc----------e--ecC--cccc--cC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-------------KKGGT----------E--HLG--LPVF--NT   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP-------------~~~g~----------~--i~G--~p~y--~s   90 (331)
                      +||+|+|+ |++|+.+++.+.+.   ++++++..++             ...|+          .  +.|  ++++  .+
T Consensus         3 ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (380)
T 2d2i_A            3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (380)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             cEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence            68999999 99999999998875   3788865443             10111          1  123  2333  24


Q ss_pred             HHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           91 VAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      .++++- +.++|+++.++|.....+.+...++.|++.+|+
T Consensus        82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVI  121 (380)
T 2d2i_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI  121 (380)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred             hHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence            566651 126999999999999999999999999998664

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.65  E-value=0.012  Score=56.05  Aligned_cols=91  Identities=13%  Similarity=-0.046  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCC-------------CCCC-----------ce--ecCcc--cc--c
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTP-------------KKGG-----------TE--HLGLP--VF--N   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP-------------~~~g-----------~~--i~G~p--~y--~   89 (331)
                      +||+|+|+ |+.|+.++|.+.+.   .+++++..|.             +..|           +.  +.|.+  ++  .
T Consensus         2 ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~   80 (337)
T 1rm4_O            2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   80 (337)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence            68999999 99999999998876   3567744322             1001           11  22322  33  2


Q ss_pred             CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 020101           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus        90 sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      +.++++- +.++|+++.++|.....+.+...++.|++.|+ ++..+.
T Consensus        81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~-iSap~r  126 (337)
T 1rm4_O           81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL-ITAPGK  126 (337)
T ss_dssp             CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEE-ESSCCB
T ss_pred             ChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEE-ECCccc
Confidence            3444431 12689999999999999999999999999866 565553

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.64  E-value=0.03  Score=51.53  Aligned_cols=89  Identities=10%  Similarity=0.015  Sum_probs=56.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec--Ccccc-------cCHHHhhhcCCCCEEEEecChh--
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVF-------NTVAEAKAETKANASAIYVPPP--  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~--G~p~y-------~sl~dl~~~~~iDlaii~vp~~--  110 (331)
                      .++|+|.|++|.+|+.+++.|.+.|+++++........+...  ++..+       .+++++.+  ++|++|-+....  
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~a~~~~~   90 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGYYPS   90 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC------
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc--CCCEEEECCccCcC
Confidence            357999999999999999999999999874432211101111  22222       23455555  799999765421  


Q ss_pred             --------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 --------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 --------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                    ....+++.|.+.|++.+|.+++
T Consensus        91 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  126 (342)
T 2x4g_A           91 RPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS  126 (342)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence                          2356778888889887776665

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.62  E-value=0.017  Score=46.16  Aligned_cols=89  Identities=9%  Similarity=0.081  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccc-c---CHHHhhh--cCCCCEEEEecChh--h
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVF-N---TVAEAKA--ETKANASAIYVPPP--F  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y-~---sl~dl~~--~~~iDlaii~vp~~--~  111 (331)
                      .+|+|+|+ |.+|+.+.+.|.+.|++++ .++++... +.  ..|...+ .   +.+.+.+  -.++|+++++++.+  .
T Consensus         7 ~~v~I~G~-G~iG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   84 (144)
T 2hmt_A            7 KQFAVIGL-GRFGGSIVKELHRMGHEVL-AVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   84 (144)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCCE-EEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHH
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHH
Confidence            35789999 9999999999999898865 55543210 00  1122222 1   2222221  12689999999864  3


Q ss_pred             HHHHHHHHHHcCCcEEEEecCC
Q 020101          112 AAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      ...++..+.+.|++.++..+.+
T Consensus        85 ~~~~~~~~~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           85 STLTTLLLKELDIPNIWVKAQN  106 (144)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCS
T ss_pred             HHHHHHHHHHcCCCeEEEEeCC
Confidence            4566677778888876655544

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.53  E-value=0.021  Score=53.96  Aligned_cols=89  Identities=15%  Similarity=0.056  Sum_probs=56.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCc--e---ecCcccc-------cCHHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT--E---HLGLPVF-------NTVAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~--~---i~G~p~y-------~sl~dl~~~~~iDlaii~v  107 (331)
                      +.++|+|.|++|-+|+.+++.|.+.| +++++. +......  .   ..++..+       .+++++.+  ++|++|-+.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vih~A  107 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVV-DNLLSAEKINVPDHPAVRFSETSITDDALLASLQD--EYDYVFHLA  107 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEE-CCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS--CCSEEEECC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEE-ECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh--CCCEEEECC
Confidence            34678999999999999999999999 998844 3322111  0   1122222       12344444  799999765


Q ss_pred             Chh------------------hHHHHHHHHHHc-CCcEEEEecC
Q 020101          108 PPP------------------FAAAAILEAMEA-ELDLVVCITE  132 (331)
Q Consensus       108 p~~------------------~~~~~v~~~~~~-Gi~~ivi~t~  132 (331)
                      ...                  ....+++.|.+. +++.+|.+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS  151 (377)
T 2q1s_A          108 TYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA  151 (377)
T ss_dssp             CCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             CccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            421                  134566777777 8887776655

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.48  E-value=0.012  Score=54.61  Aligned_cols=90  Identities=9%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee--cCcccc----------cCHHHhhhcCCCCEEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF----------NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i--~G~p~y----------~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ++|+|+|+ |.+|..+...|. .|.++. .+++.... +.+  .|+.+.          +.-++...  +.|+++++|++
T Consensus         3 mkI~IiGa-Ga~G~~~a~~L~-~g~~V~-~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~--~~D~vilavK~   77 (307)
T 3ego_A            3 LKIGIIGG-GSVGLLCAYYLS-LYHDVT-VVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINS--DFDLLVVTVKQ   77 (307)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCS--CCSEEEECCCG
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCceE-EEECCHHHHHHHHhCCceEecCCCeecccccccccccC--CCCEEEEEeCH
Confidence            57899999 999999998888 888876 66654310 111  233221          10012222  68999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChh
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQH  137 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~  137 (331)
                      ....++++++...+-+.++.++.|+..+
T Consensus        78 ~~~~~~l~~l~~~~~~~ivs~~nGi~~~  105 (307)
T 3ego_A           78 HQLQSVFSSLERIGKTNILFLQNGMGHI  105 (307)
T ss_dssp             GGHHHHHHHTTSSCCCEEEECCSSSHHH
T ss_pred             HHHHHHHHHhhcCCCCeEEEecCCccHH
Confidence            9999998877654434467788899643

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.48  E-value=0.013  Score=58.81  Aligned_cols=106  Identities=19%  Similarity=0.304  Sum_probs=68.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v~  117 (331)
                      +..+|.|||. |++|+.+.+.+...|++++ ..||....+  ...|+... +++++..  +.|++++++|.. ....++.
T Consensus       141 ~g~~vgIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-~l~e~~~--~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          141 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIELL-SLDDLLA--RADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCEEC-CHHHHHH--HCSEEEECCCCSTTTTTCBC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCcEEc-CHHHHHh--cCCEEEECCCCchHHHHHhC
Confidence            3457889999 9999999999999999977 778865211  12455544 7888887  689999999987 5555554


Q ss_pred             H-HHH-cCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          118 E-AME-AELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       118 ~-~~~-~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      + ... .+-.. ++..+.|-. -+..+|.+.. ++.++.
T Consensus       216 ~~~~~~~k~g~ilin~arg~i-v~~~aL~~al-~~g~i~  252 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGL-VDEAALADAI-TGGHVR  252 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS-BCHHHHHHHH-HTSSEE
T ss_pred             HHHHhCCCCCCEEEECCCCch-hhHHHHHHHH-HcCCcc
Confidence            4 322 22233 333444432 2333455544 454443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.47  E-value=0.045  Score=44.99  Aligned_cols=87  Identities=13%  Similarity=0.001  Sum_probs=52.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--ce-----ecCccccc-------CHHHh-hhcCCCCEEEEec
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TE-----HLGLPVFN-------TVAEA-KAETKANASAIYV  107 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~~-----i~G~p~y~-------sl~dl-~~~~~iDlaii~v  107 (331)
                      .+|+|+|+ |+.|+.+.+.|.+.|++++ .+++....  +.     -.|+.++.       .+++. .+  +.|++++++
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~~g~~V~-vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~   79 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQRGQNVT-VISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGID--RCRAILALS   79 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEE-EEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTT--TCSEEEECS
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChh--hCCEEEEec
Confidence            45788998 9999999999999999877 66654200  01     12333331       23333 22  689999999


Q ss_pred             ChhhHHHHH-HHHHHc-CCcEEEEecCC
Q 020101          108 PPPFAAAAI-LEAMEA-ELDLVVCITEG  133 (331)
Q Consensus       108 p~~~~~~~v-~~~~~~-Gi~~ivi~t~G  133 (331)
                      +.+..-..+ ..+-+. +...++....+
T Consensus        80 ~~d~~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           80 DNDADNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            876544433 444444 54454544433

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.45  E-value=0.018  Score=54.63  Aligned_cols=90  Identities=18%  Similarity=0.085  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCc--------ee-----------------cC--ccccc--CHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT--------EH-----------------LG--LPVFN--TVA   92 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~--------~i-----------------~G--~p~y~--sl~   92 (331)
                      +||+|+|+ |+.|+.++|.+.+. .+++++.-+....+.        ++                 .|  ++++.  +.+
T Consensus         2 ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   80 (330)
T 1gad_O            2 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA   80 (330)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChh
Confidence            68999996 99999999998876 578885544311110        00                 11  11233  355


Q ss_pred             Hhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101           93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus        93 dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      +++- +.++|+++.++|.....+.+...+++|++.|+ ++..+
T Consensus        81 ~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVd-lSa~~  122 (330)
T 1gad_O           81 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV-MTGPS  122 (330)
T ss_dssp             GGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE-ESSCC
T ss_pred             hCccccccCCEEEECCCccccHHHHHHHHHCCCEEEE-ECCCC
Confidence            5541 12699999999999999999999999999855 67666

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.42  E-value=0.0056  Score=57.09  Aligned_cols=90  Identities=13%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee------------cCcccccCHHHhhhcCCCCEEEEec
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------------LGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i------------~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ..+.+|+|||+ |.||..++.++. .|++++ .+|++.  +..            .++....+++++ .  +.|++|.++
T Consensus        10 ~~~~~V~vIG~-G~MG~~iA~~la-aG~~V~-v~d~~~--~~~~~~~~~l~~~~~~~i~~~~~~~~~-~--~aDlVieav   81 (293)
T 1zej_A           10 HHHMKVFVIGA-GLMGRGIAIAIA-SKHEVV-LQDVSE--KALEAAREQIPEELLSKIEFTTTLEKV-K--DCDIVMEAV   81 (293)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCH--HHHHHHHHHSCGGGGGGEEEESSCTTG-G--GCSEEEECC
T ss_pred             cCCCeEEEEee-CHHHHHHHHHHH-cCCEEE-EEECCH--HHHHHHHHHHHHHHhCCeEEeCCHHHH-c--CCCEEEEcC
Confidence            34577899999 999999999999 999877 777764  211            145556677773 4  689999999


Q ss_pred             ChhhH--HHHHHHHHHcCCcEEEE-ecCCCChhH
Q 020101          108 PPPFA--AAAILEAMEAELDLVVC-ITEGIPQHD  138 (331)
Q Consensus       108 p~~~~--~~~v~~~~~~Gi~~ivi-~t~G~~e~~  138 (331)
                      |.+..  ..+..++... -..++. -|+.++.++
T Consensus        82 pe~~~vk~~l~~~l~~~-~~~IlasntSti~~~~  114 (293)
T 1zej_A           82 FEDLNTKVEVLREVERL-TNAPLCSNTSVISVDD  114 (293)
T ss_dssp             CSCHHHHHHHHHHHHTT-CCSCEEECCSSSCHHH
T ss_pred             cCCHHHHHHHHHHHhcC-CCCEEEEECCCcCHHH
Confidence            98775  3333444444 333332 244566554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.39  E-value=0.061  Score=49.17  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=58.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCce-----ecCcccc-------cCHHHhhhcCCCCEEEEecCh-
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE-----HLGLPVF-------NTVAEAKAETKANASAIYVPP-  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~-----i~G~p~y-------~sl~dl~~~~~iDlaii~vp~-  109 (331)
                      +|+|.|++|.+|+.+++.|.+.|+++++.+. +....+.     -.|+.++       .++.++.+  ++|+++.+.+. 
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a~~~   90 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISALAFP   90 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCGG
T ss_pred             eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECCchh
Confidence            5889999999999999999999998775433 3210000     1233332       23555555  79999988764 


Q ss_pred             --hhHHHHHHHHHHcC-CcEEEEecC
Q 020101          110 --PFAAAAILEAMEAE-LDLVVCITE  132 (331)
Q Consensus       110 --~~~~~~v~~~~~~G-i~~ivi~t~  132 (331)
                        .....+++.|.+.| ++.++ ++.
T Consensus        91 ~~~~~~~l~~aa~~~g~v~~~v-~S~  115 (318)
T 2r6j_A           91 QILDQFKILEAIKVAGNIKRFL-PSD  115 (318)
T ss_dssp             GSTTHHHHHHHHHHHCCCCEEE-CSC
T ss_pred             hhHHHHHHHHHHHhcCCCCEEE-eec
Confidence              44677888888888 99865 443

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.39  E-value=0.069  Score=50.40  Aligned_cols=91  Identities=8%  Similarity=0.011  Sum_probs=58.6

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee--cCccc-------ccCHHHhhhcCCCCEEEEecChh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LGLPV-------FNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i--~G~p~-------y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      .+.++|+|.|++|.+|+.+++.|.+.|+++++...........  .++..       ..+++++.+  ++|++|-+....
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~  104 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADM  104 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCEEEECceec
Confidence            3456899999999999999999999999987543322110110  12221       223555555  799999765311


Q ss_pred             -------------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 -------------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 -------------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                         ....+++.|.+.+++.+|.+++
T Consensus       105 ~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS  145 (379)
T 2c5a_A          105 GGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS  145 (379)
T ss_dssp             CCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence                               1345677788889988776665

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.38  E-value=0.0095  Score=56.39  Aligned_cols=106  Identities=21%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v  116 (331)
                      ...+|.|||. |++|+.+++.+..+|++++ ..||.....+   ..|.. +.+++++..  ..|++++++|.. ....++
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGATLQ-YHEAKALDTQTEQRLGLR-QVACSELFA--SSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCCEEE-EECSSCCCHHHHHHHTEE-ECCHHHHHH--HCSEEEECCCCSTTTTTCB
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCCCcHhHHHhcCce-eCCHHHHHh--hCCEEEEcCCCCHHHHHHh
Confidence            4567899999 9999999999999999977 7787641111   23553 458999987  689999999943 333333


Q ss_pred             -HHHHH-cCCcEE-EEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 -LEAME-AELDLV-VCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 -~~~~~-~Gi~~i-vi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                       ++.++ .+-..+ |+.+.|- --+...|.+.. ++.++.
T Consensus       219 ~~~~l~~mk~gailIN~arg~-~vd~~aL~~aL-~~g~i~  256 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGS-VVDEAAVLAAL-ERGQLG  256 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHH-HHTSEE
T ss_pred             CHHHHhhCCCCcEEEECCCCc-hhCHHHHHHHH-HhCCcc
Confidence             22222 233333 3344442 22334455554 455544

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.38  E-value=0.024  Score=51.77  Aligned_cols=92  Identities=10%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccc-------ccCHHHhhhcCCCCEEEEecChh-
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-------FNTVAEAKAETKANASAIYVPPP-  110 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~-------y~sl~dl~~~~~iDlaii~vp~~-  110 (331)
                      .+++.+|+|.|++|-+|+.+++.|.+.|+++++...... .+. .++..       ..+++++.+..++|++|-+.... 
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~-l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~   86 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE-AKL-PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSS   86 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT-CCC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc-ccc-ceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccc
Confidence            467888999999999999999999999999875433221 111 12221       22344554422489999765321 


Q ss_pred             -----------------hHHHHHHHHHHc-CCcEEEEecC
Q 020101          111 -----------------FAAAAILEAMEA-ELDLVVCITE  132 (331)
Q Consensus       111 -----------------~~~~~v~~~~~~-Gi~~ivi~t~  132 (331)
                                       ....+++.|.+. +++.+|.+++
T Consensus        87 ~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  126 (321)
T 2pk3_A           87 VKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS  126 (321)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred             hhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence                             134566666554 5777776665

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.37  E-value=0.0064  Score=56.08  Aligned_cols=93  Identities=14%  Similarity=-0.007  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee---cCc---ccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH---LGL---PVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i---~G~---p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      .+|+|+|+ |.+|......|.+.|.++. .+++...+-+.   .|.   ++..+..+... .+.|+++++||+....+++
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~D~vilavk~~~~~~~l   79 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLPHTT-LIGRHAKTITYYTVPHAPAQDIVVKGYEDVT-NTFDVIIIAVKTHQLDAVI   79 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCTTCE-EEESSCEEEEEESSTTSCCEEEEEEEGGGCC-SCEEEEEECSCGGGHHHHG
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeccCcEEEEecCCeeccceecCchHhcC-CCCCEEEEeCCccCHHHHH
Confidence            46889999 9999999999988887755 55554311111   231   12222223221 2689999999999999988


Q ss_pred             HHHHHc-CC-cEEEEecCCCChhH
Q 020101          117 LEAMEA-EL-DLVVCITEGIPQHD  138 (331)
Q Consensus       117 ~~~~~~-Gi-~~ivi~t~G~~e~~  138 (331)
                      +++... +- ..++.++.|+..++
T Consensus        80 ~~l~~~l~~~~~iv~~~nGi~~~~  103 (294)
T 3g17_A           80 PHLTYLAHEDTLIILAQNGYGQLE  103 (294)
T ss_dssp             GGHHHHEEEEEEEEECCSSCCCGG
T ss_pred             HHHHHhhCCCCEEEEeccCcccHh
Confidence            887653 21 34566788986544

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.36  E-value=0.025  Score=52.28  Aligned_cols=93  Identities=8%  Similarity=0.042  Sum_probs=57.7

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCC-CC--cee------cCcccc-------cCHHHhhhcCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GG--TEH------LGLPVF-------NTVAEAKAETKA  100 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~-~g--~~i------~G~p~y-------~sl~dl~~~~~i  100 (331)
                      ..+.++|+|.|++|-+|+.+++.|.+.|  ++++ .++... ..  ..+      .++..+       .+++++.+..++
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   99 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKII-NFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV   99 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEE-EEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEE-EEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence            4566789999999999999999999888  6666 443221 00  000      122222       235555553348


Q ss_pred             CEEEEecChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          101 NASAIYVPPP------------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       101 Dlaii~vp~~------------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      |++|-+....                  ....+++.|.+.|++.+|.+++
T Consensus       100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  149 (346)
T 4egb_A          100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST  149 (346)
T ss_dssp             CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred             CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            9999665321                  1356788888899998776664

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.32  E-value=0.021  Score=54.87  Aligned_cols=106  Identities=11%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI-  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v-  116 (331)
                      ...+|.|||. |++|+.+++.++.+|++++ ..||....+  ...|+. +.+++++..  ..|++++++|.. ....++ 
T Consensus       175 ~gktvGIIGl-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~--~aDvV~l~~Plt~~T~~li~  249 (365)
T 4hy3_A          175 AGSEIGIVGF-GDLGKALRRVLSGFRARIR-VFDPWLPRSMLEENGVE-PASLEDVLT--KSDFIFVVAAVTSENKRFLG  249 (365)
T ss_dssp             SSSEEEEECC-SHHHHHHHHHHTTSCCEEE-EECSSSCHHHHHHTTCE-ECCHHHHHH--SCSEEEECSCSSCC---CCC
T ss_pred             CCCEEEEecC-CcccHHHHHhhhhCCCEEE-EECCCCCHHHHhhcCee-eCCHHHHHh--cCCEEEEcCcCCHHHHhhcC
Confidence            4567899999 9999999999999999987 778764211  124554 568999998  799999999964 233333 


Q ss_pred             HHHH-HcCCcE-EEEecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 LEAM-EAELDL-VVCITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~~~~-~~Gi~~-ivi~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      ++.+ ..+-.. +|+.+.|- --+...|.++. ++..+.
T Consensus       250 ~~~l~~mk~gailIN~aRG~-~vde~aL~~aL-~~g~i~  286 (365)
T 4hy3_A          250 AEAFSSMRRGAAFILLSRAD-VVDFDALMAAV-SSGHIV  286 (365)
T ss_dssp             HHHHHTSCTTCEEEECSCGG-GSCHHHHHHHH-HTTSSE
T ss_pred             HHHHhcCCCCcEEEECcCCc-hhCHHHHHHHH-HcCCce
Confidence            2222 233333 34455452 23344555555 566665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.32  E-value=0.015  Score=49.36  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=53.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-ce--ecCcccc-c---C---HHHhhhcCCCCEEEEecChh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE--HLGLPVF-N---T---VAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~~--i~G~p~y-~---s---l~dl~~~~~iDlaii~vp~~  110 (331)
                      ..+|+|+|+ |++|+.+++.|.+. |++++ .++.+... +.  ..|..++ -   +   +.++..-.+.|++++++|..
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~-vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~  116 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISL-GIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH  116 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEE-EEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEE-EEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence            345889998 99999999999998 99877 66655310 00  1354433 1   2   23320012689999999865


Q ss_pred             hH-HHHHHHHHHcC-CcEEEEec
Q 020101          111 FA-AAAILEAMEAE-LDLVVCIT  131 (331)
Q Consensus       111 ~~-~~~v~~~~~~G-i~~ivi~t  131 (331)
                      .. ..++..+.+.+ ...++..+
T Consensus       117 ~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          117 QGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEE
Confidence            44 44455555656 44444433

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.31  E-value=0.043  Score=51.69  Aligned_cols=192  Identities=10%  Similarity=-0.003  Sum_probs=101.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCC-cee---cCccc-----c---cCHHHhhhcCCCCEEEEecC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-TEH---LGLPV-----F---NTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g-~~i---~G~p~-----y---~sl~dl~~~~~iDlaii~vp  108 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|+++++.+. +.... +..   .++..     +   .++.++.+  ++|+++.+..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~a~   82 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINTT   82 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEcCC
Confidence            346889999999999999999988999875443 32100 000   12211     1   23455555  7899997664


Q ss_pred             h------hhHHHHHHHHHHcC-CcEEEEecCCC-Ch---------hHH-HHHHHHHhccCCcE--EEccCCCCcccCC--
Q 020101          109 P------PFAAAAILEAMEAE-LDLVVCITEGI-PQ---------HDM-VRVKAALNNQSKTR--LVGPNCPGVIKPG--  166 (331)
Q Consensus       109 ~------~~~~~~v~~~~~~G-i~~ivi~t~G~-~e---------~~~-~~l~~~a~~~~gi~--viGPnc~Gi~~p~--  166 (331)
                      .      .....+++.|.+.| ++.+|.+++.. .+         ... ....+.+ ++.+++  ++=|+   ++.+.  
T Consensus        83 ~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~-~~~gi~~~ivrpg---~~g~~~~  158 (352)
T 1xgk_A           83 SQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYV-RQLGLPSTFVYAG---IYNNNFT  158 (352)
T ss_dssp             STTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHH-HTSSSCEEEEEEC---EEGGGCB
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHH-HHcCCCEEEEecc---eecCCch
Confidence            3      23466778888889 98878777642 11         011 1223333 455643  33333   22222  


Q ss_pred             Cc-------c---cccC--CCCCCCCCCEEEEecChHHHHHHHHHHHhCC---CCceEEEecCCCCCCCCCHHHHHHHhh
Q 020101          167 EC-------K---IGIM--PGYIHKPGRIGIVSRSGTLTYEAVFQTTAVG---LGQSTCVGIGGDPFNGTNFVDCVTKFI  231 (331)
Q Consensus       167 ~~-------~---~~~~--~~~~~~~G~valisQSG~~~~~~~~~~~~~g---~g~s~~vs~Gn~~~~~v~~~d~l~~l~  231 (331)
                      ..       .   .+..  +......+.+.+++--..++..+...+.+..   .|-.+.++  ++   .+++.|+++.+.
T Consensus       159 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~--~~---~~s~~e~~~~i~  233 (352)
T 1xgk_A          159 SLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALT--FE---TLSPVQVCAAFS  233 (352)
T ss_dssp             SSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEEC--SE---EECHHHHHHHHH
T ss_pred             hcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEe--cC---CCCHHHHHHHHH
Confidence            00       0   0000  0000123455665422456666655554321   23334444  34   478899988887


Q ss_pred             cCCCccEEEEEEc
Q 020101          232 ADPQTEGIILIGE  244 (331)
Q Consensus       232 ~Dp~T~~I~ly~E  244 (331)
                      +--..+.-...+.
T Consensus       234 ~~~G~~~~~~~vp  246 (352)
T 1xgk_A          234 RALNRRVTYVQVP  246 (352)
T ss_dssp             HHHTSCEEEEECS
T ss_pred             HHHCCCCceEECC
Confidence            7555555444444

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.30  E-value=0.04  Score=51.21  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e--------ecCcccc-------cCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--------HLGLPVF-------NTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~--------i~G~p~y-------~sl~dl~~~~~iDlaii~  106 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++.+....... .        -.++.++       .++.++.++.++|++|.+
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~   90 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST   90 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence            46889999999999999999999998875544321000 0        0122222       235555554579999988


Q ss_pred             cCh---hhHHHHHHHHHHcC-CcEEE
Q 020101          107 VPP---PFAAAAILEAMEAE-LDLVV  128 (331)
Q Consensus       107 vp~---~~~~~~v~~~~~~G-i~~iv  128 (331)
                      ...   .....+++.|.+.| ++.++
T Consensus        91 a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           91 VGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CchhhHHHHHHHHHHHHHcCCceEEe
Confidence            765   45678888999999 99865

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.24  E-value=0.022  Score=54.03  Aligned_cols=86  Identities=14%  Similarity=0.054  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCC-------------CCCc----------e--ecC--ccccc--C
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPK-------------KGGT----------E--HLG--LPVFN--T   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~-------------~~g~----------~--i~G--~p~y~--s   90 (331)
                      +||+|+|+ |+.|+.++|.+.+.   .+++++.-+..             ..|+          .  +.|  ++++.  +
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            47899999 99999999988765   47888554321             0111          0  122  33442  4


Q ss_pred             HHHhh-hcCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           91 VAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        91 l~dl~-~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      .++++ .+.++|+++.++|.....+.+...+++|+|.+||
T Consensus        80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI  119 (332)
T 1hdg_O           80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII  119 (332)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence            55553 1126899999999999999999999999987664

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.23  E-value=0.0094  Score=54.61  Aligned_cols=69  Identities=16%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +..+|+|+|+ |.+|+.+++.|.+.|++++ .+|++... ++   ..|+.++++++++.+  +.|++|.+||+....
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~~V~-v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDiVi~atp~~~~~  200 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGAKVF-LWNRTKEKAIKLAQKFPLEVVNSPEEVID--KVQVIVNTTSVGLKD  200 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSSHHHHHHHTTTSCEEECSCGGGTGG--GCSEEEECSSTTSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCCEEE-EEECCHHHHHHHHHHcCCeeehhHHhhhc--CCCEEEEeCCCCCCC
Confidence            4567899998 9999999999998888654 88876411 11   235666667777766  689999999988643

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.19  E-value=0.019  Score=51.53  Aligned_cols=86  Identities=19%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEe-CCCCCCcee--cCcccc-------cCHHHhhhcCCCCEEEEecCh--
Q 020101           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGGTEH--LGLPVF-------NTVAEAKAETKANASAIYVPP--  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~V-nP~~~g~~i--~G~p~y-------~sl~dl~~~~~iDlaii~vp~--  109 (331)
                      +|+|.|++|.+|+.+++.|.+.  |+++++.. +|... +..  .++.++       .+++++.+  ++|+++.+...  
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~~   77 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA-QALAAQGITVRQADYGDEAALTSALQ--GVEKLLLISSSEV   77 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTC-HHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECC----
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhh-hhhhcCCCeEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCc
Confidence            3788999999999999999887  88877443 23221 110  122222       23555555  78999977643  


Q ss_pred             ----hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ----PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ----~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                          .....+++.|.+.|++.++.+++
T Consensus        78 ~~~~~~~~~l~~a~~~~~~~~~v~~Ss  104 (286)
T 2zcu_A           78 GQRAPQHRNVINAAKAAGVKFIAYTSL  104 (286)
T ss_dssp             ----CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                34667788888899988777665

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.18  E-value=0.027  Score=52.83  Aligned_cols=87  Identities=15%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee--cC-------------cccccCHHHhhhcCCCCEEEEec
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--LG-------------LPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i--~G-------------~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      .+|+|||+ |.+|..+...|.+.|+++. .+++...-+.+  .|             +++..+.+++ .  +.|++++++
T Consensus         4 mkI~IiGa-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~Vilav   78 (335)
T 3ghy_A            4 TRICIVGA-GAVGGYLGARLALAGEAIN-VLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G--EQDVVIVAV   78 (335)
T ss_dssp             CCEEEESC-CHHHHHHHHHHHHTTCCEE-EECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C--CCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCEEE-EEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C--CCCEEEEeC
Confidence            57899999 9999999999998898866 66652100100  12             2334567775 3  689999999


Q ss_pred             ChhhHHHHHHHHHHc-C-CcEEEEecCCC
Q 020101          108 PPPFAAAAILEAMEA-E-LDLVVCITEGI  134 (331)
Q Consensus       108 p~~~~~~~v~~~~~~-G-i~~ivi~t~G~  134 (331)
                      |+....+++++.... + -..++.++.|+
T Consensus        79 k~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           79 KAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            998888877765432 1 23456678896

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.17  E-value=0.042  Score=50.16  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh-----------
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-----------  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-----------  110 (331)
                      .++|+|.|++|-+|+.+++.|.+.|++++. +.....    ..+.-..+++++.++.++|++|-+....           
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~-~~r~~~----~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~   77 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELV-LRTRDE----LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPA   77 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEE-CCCTTT----CCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEE-EecCcc----CCccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHH
Confidence            367899999999999999999999998774 443221    1122223455555433689999765321           


Q ss_pred             --------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 --------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 --------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                              ....+++.|.+.+++.+|.+++
T Consensus        78 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  107 (321)
T 1e6u_A           78 DFIYQNMMIESNIIHAAHQNDVNKLLFLGS  107 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence                    2345677888889988776665

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.15  E-value=0.017  Score=54.38  Aligned_cols=58  Identities=28%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             cccccccCCCCCCCCCCCCcccccCCCC-eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           15 MSSEICCGQSRSFTTAPPPAPAVFVDKN-TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~l~~ll~~k~-~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      |++|---..+++-.++++..+..- ++. .+|+|.|++|-+|+.+++.|.+.|+++++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~M~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~   59 (381)
T 1n7h_A            1 MASENNGSRSDSESITAPKADSTV-VEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLI   59 (381)
T ss_dssp             ----------------------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCccCCCCcccccccccCCCCchh-hhhCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence            444433334445444444444433 222 4789999999999999999999999987543

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.00  E-value=0.062  Score=49.43  Aligned_cols=92  Identities=10%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee--------cCccc-------ccCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH--------LGLPV-------FNTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i--------~G~p~-------y~sl~dl~~~~~iDlai  104 (331)
                      +..+|+|.|++|-+|+.+++.|.+.|++++.... +....+..        .++..       ..+++++.++.++|++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            3457889999999999999999999999874322 22110000        01111       22355555444699998


Q ss_pred             EecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          105 IYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       105 i~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      -+...                  .....+++.|.+.+++.+|.+++
T Consensus        84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  129 (341)
T 3enk_A           84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS  129 (341)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            76531                  12445677888889988777765

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.91  E-value=0.11  Score=44.23  Aligned_cols=88  Identities=19%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceecCcccc-cCHHHh---hhcCCCCEEEEecChh-----
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLPVF-NTVAEA---KAETKANASAIYVPPP-----  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~G~p~y-~sl~dl---~~~~~iDlaii~vp~~-----  110 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|.  +++ .++.+.. +...++..+ -++.+.   .+.. +|++|.+....     
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~-~~~r~~~-~~~~~~~~~~~D~~~~~~~~~~~-~d~vi~~a~~~~~~~~   81 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI-APARKAL-AEHPRLDNPVGPLAELLPQLDGS-IDTAFCCLGTTIKEAG   81 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE-CCBSSCC-CCCTTEECCBSCHHHHGGGCCSC-CSEEEECCCCCHHHHS
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEE-EEeCCCc-ccCCCceEEeccccCHHHHHHhh-hcEEEECeeeccccCC
Confidence            35789999999999999999999887  777 4443321 112233222 244442   2222 89999876431     


Q ss_pred             -----------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 -----------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 -----------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                 ....+++.|.+.|++.++.+++
T Consensus        82 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  114 (215)
T 2a35_A           82 SEEAFRAVDFDLPLAVGKRALEMGARHYLVVSA  114 (215)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECC
Confidence                       3455777888889988777666

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.84  E-value=0.016  Score=55.15  Aligned_cols=87  Identities=14%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce----ecCccccc--------------------CHHHhhhc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE----HLGLPVFN--------------------TVAEAKAE   97 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~----i~G~p~y~--------------------sl~dl~~~   97 (331)
                      +||+|+|+ |++|+.+++.+.+. ++++++..+.......    ..|..+|.                    +.++++. 
T Consensus         3 ikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~-   80 (343)
T 2yyy_A            3 AKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE-   80 (343)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG-
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc-
Confidence            68999999 99999999998876 6888865443210000    11222222                    2333333 


Q ss_pred             CCCCEEEEecChhhHHHHHH-HHHHcCCcEEEEecCCC
Q 020101           98 TKANASAIYVPPPFAAAAIL-EAMEAELDLVVCITEGI  134 (331)
Q Consensus        98 ~~iDlaii~vp~~~~~~~v~-~~~~~Gi~~ivi~t~G~  134 (331)
                       ++|+++.++|.....+..+ .++++|.+ ++ .+.+.
T Consensus        81 -~vDiV~eatg~~~s~~~a~~~~l~aG~~-VI-~sap~  115 (343)
T 2yyy_A           81 -DADIVVDGAPKKIGKQNLENIYKPHKVK-AI-LQGGE  115 (343)
T ss_dssp             -GCSEEEECCCTTHHHHHHHHTTTTTTCE-EE-ECTTS
T ss_pred             -CCCEEEECCCccccHHHHHHHHHHCCCE-EE-ECCCc
Confidence             7999999999999888886 89999966 34 45544

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.82  E-value=0.057  Score=46.51  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      +|+|.|++|.+|+.+++.|.+.|+++++.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~   30 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAV   30 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEE
Confidence            68899999999999999999999998744

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.77  E-value=0.069  Score=50.02  Aligned_cols=96  Identities=10%  Similarity=0.129  Sum_probs=61.3

Q ss_pred             CcccccCCCCeEEEEEcCCCCCCcHHHHHHHHc-CC-eEEEEeCCCCCCc----------e----ecCcccccCHHHhhh
Q 020101           33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEY-GT-KMVGGVTPKKGGT----------E----HLGLPVFNTVAEAKA   96 (331)
Q Consensus        33 ~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~-g~-~iv~~VnP~~~g~----------~----i~G~p~y~sl~dl~~   96 (331)
                      .+...|.  ..+|+|.|++|.+|+.+++.|.+. |+ +++ .++......          .    ...+.-..+++++.+
T Consensus        14 ~~~~~~~--~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~   90 (344)
T 2gn4_A           14 NHQNMLD--NQTILITGGTGSFGKCFVRKVLDTTNAKKII-VYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE   90 (344)
T ss_dssp             --CCTTT--TCEEEEETTTSHHHHHHHHHHHHHCCCSEEE-EEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT
T ss_pred             cHHHhhC--CCEEEEECCCcHHHHHHHHHHHhhCCCCEEE-EEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh
Confidence            3556663  456889999999999999999988 97 776 443321000          0    012222234555555


Q ss_pred             cCCCCEEEEecChhh------------------HHHHHHHHHHcCCcEEEEecCC
Q 020101           97 ETKANASAIYVPPPF------------------AAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus        97 ~~~iDlaii~vp~~~------------------~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                        ++|++|-+.....                  ...+++.|.+.|++.+|.+++.
T Consensus        91 --~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~  143 (344)
T 2gn4_A           91 --GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD  143 (344)
T ss_dssp             --TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred             --cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence              7999997763211                  2467788888999988877763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.76  E-value=0.054  Score=49.99  Aligned_cols=91  Identities=14%  Similarity=0.090  Sum_probs=57.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCC---ceecCcccc-------cCHHHhhhcCCCCEEEEecCh-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG---TEHLGLPVF-------NTVAEAKAETKANASAIYVPP-  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g---~~i~G~p~y-------~sl~dl~~~~~iDlaii~vp~-  109 (331)
                      .++|+|.|++|-+|+.+++.|.+.|+++++... +....   +.+.++..+       .+++++.++.++|++|-+... 
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~   99 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAY   99 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCccC
Confidence            357889999999999999999999999875443 22110   011122222       124444432268999876532 


Q ss_pred             --------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                    .....+++.|.+.|++.+|.+++
T Consensus       100 ~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS  136 (330)
T 2pzm_A          100 KDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQT  136 (330)
T ss_dssp             SCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence                          12456777888888887776664

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.65  E-value=0.1  Score=47.71  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ceec-Cccc-------ccCHHHhhhcCCCCEEEEecCh----
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHL-GLPV-------FNTVAEAKAETKANASAIYVPP----  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i~-G~p~-------y~sl~dl~~~~~iDlaii~vp~----  109 (331)
                      ++|+|.|++|-+|+.+++.|.+.|+++++........ +.+. ++..       ..+++++.++.++|++|-+...    
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~~   81 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVG   81 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCcc
Confidence            4688999999999999999999999987543321100 1111 2221       1234444443368999876532    


Q ss_pred             --------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                    .....+++.|.+.|++.+|.+++
T Consensus        82 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss  118 (330)
T 2c20_A           82 VSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST  118 (330)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence                          12345667777889988776665

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.65  E-value=0.14  Score=44.45  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=56.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC--------cee-cCcccccCHHHhhhcCCCCEEEEecCh-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG--------TEH-LGLPVFNTVAEAKAETKANASAIYVPP-  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g--------~~i-~G~p~y~sl~dl~~~~~iDlaii~vp~-  109 (331)
                      ..+|+|.|++|.+|+.+++.|.+.  |++++.. +.+...        ..+ ..+.-..+++++.+  ++|++|.+... 
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~   80 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL-VRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAV   80 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEE-ESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEE-EcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CCCEEEEecccc
Confidence            456889999999999999999988  7887743 332100        000 11222234556555  68999876531 


Q ss_pred             ------------------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ------------------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ------------------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                                    .....+++.|.+.+++.+|.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  133 (253)
T 1xq6_A           81 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS  133 (253)
T ss_dssp             CEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             ccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence                                          12466777888888888776665

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.65  E-value=0.077  Score=52.66  Aligned_cols=88  Identities=15%  Similarity=0.075  Sum_probs=54.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh-----------
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-----------  110 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-----------  110 (331)
                      .++|+|.|++|.+|+.+++.|.+.|+++++.+......+.+.+-. -..+.+..+  ++|++|-+....           
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~-~~~~~~~l~--~~D~Vih~A~~~~~~~~~~~~~~  223 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDP-LNPASDLLD--GADVLVHLAGEPIFGRFNDSHKE  223 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCT-TSCCTTTTT--TCSEEEECCCC-----CCGGGHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecc-cchhHHhcC--CCCEEEECCCCccccccchhHHH
Confidence            678999999999999999999999999885543222111221111 122334444  789999764321           


Q ss_pred             --------hHHHHHHH-HHHcCCcEEEEecC
Q 020101          111 --------FAAAAILE-AMEAELDLVVCITE  132 (331)
Q Consensus       111 --------~~~~~v~~-~~~~Gi~~ivi~t~  132 (331)
                              ....+++. +.+.+++.+|.+++
T Consensus       224 ~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS  254 (516)
T 3oh8_A          224 AIRESRVLPTKFLAELVAESTQCTTMISASA  254 (516)
T ss_dssp             HHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence                    13445565 44567888776654

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=94.64  E-value=0.028  Score=53.18  Aligned_cols=87  Identities=17%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCe---EEEEeCCCCCCcee--cC--ccccc-CHHHhhhcCCCCEEEEecChhhHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LG--LPVFN-TVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~---iv~~VnP~~~g~~i--~G--~p~y~-sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +||+|+||+|..|+.+++.+.+.++.   ++..-..+..|+.+  .|  ++++. +.+++    ++|+++.++|.....+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~~----~~DvV~~a~g~~~s~~   76 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL----PVDLVLASAGGGISRA   76 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSCC----CCSEEEECSHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhhc----CCCEEEECCCccchHH
Confidence            36899999999999999988855443   33222322222221  22  22222 11111    5899999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCC
Q 020101          115 AILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .+..+.+.|++. |..++-|
T Consensus        77 ~a~~~~~~G~~v-Id~s~~~   95 (331)
T 2yv3_A           77 KALVWAEGGALV-VDNSSAW   95 (331)
T ss_dssp             HHHHHHHTTCEE-EECSSSS
T ss_pred             HHHHHHHCCCEE-EECCCcc
Confidence            999999999975 4456554

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.53  E-value=0.044  Score=48.93  Aligned_cols=32  Identities=13%  Similarity=0.115  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      .+|+|.|++|.+|+.+++.|.+.|++++ .++.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~r   34 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVR-LSDI   34 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEE-ECCS
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEE-EEeC
Confidence            4688999999999999999998898877 4443

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=94.52  E-value=0.03  Score=52.24  Aligned_cols=80  Identities=19%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-ce---ecC--cccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-TE---HLG--LPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~~---i~G--~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ++..+|+|||+ |.+|+.+++.+.+. |++.+...|+.... +.   ..+  +..+.+++++.+  +.|+++.+||..  
T Consensus       133 ~~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~--~aDiVi~atp~~--  207 (312)
T 2i99_A          133 PSSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVA--GADVIITVTLAT--  207 (312)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHT--TCSEEEECCCCS--
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHh--cCCEEEEEeCCC--
Confidence            45678999999 99999999988775 87544477876421 11   124  667789999887  789999999952  


Q ss_pred             HHHHH-HHHHcCC
Q 020101          113 AAAIL-EAMEAEL  124 (331)
Q Consensus       113 ~~~v~-~~~~~Gi  124 (331)
                      .++++ +.++.|.
T Consensus       208 ~~v~~~~~l~~g~  220 (312)
T 2i99_A          208 EPILFGEWVKPGA  220 (312)
T ss_dssp             SCCBCGGGSCTTC
T ss_pred             CcccCHHHcCCCc
Confidence            33333 3444454

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=94.51  E-value=0.024  Score=50.94  Aligned_cols=83  Identities=16%  Similarity=0.122  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh------------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~------------  110 (331)
                      ++|+|.|++|.+|+.+++.|.+.|++++ .++...  .+   +.-..+++++.++.++|++|-+....            
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~--~D---~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~   79 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIY-PFDKKL--LD---ITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLA   79 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEE-EECTTT--SC---TTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEE-Eecccc--cC---CCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHH
Confidence            3789999999999999999998899887 444322  11   22233455665533589999764221            


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                            ....+++.|.+.|++ ++.+++
T Consensus        80 ~~~n~~~~~~l~~~~~~~~~~-~v~~SS  106 (287)
T 3sc6_A           80 YVINAIGARNVAVASQLVGAK-LVYIST  106 (287)
T ss_dssp             HHHHTHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence                  134578888888997 455554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.51  E-value=0.12  Score=51.27  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=32.2

Q ss_pred             cccccC--CCCeEEEEEcCCCCCCcHHHHHHHHc-CC-eEEEEeCCCC
Q 020101           34 APAVFV--DKNTRVICQGITGKNGTFHTEQAIEY-GT-KMVGGVTPKK   77 (331)
Q Consensus        34 l~~ll~--~k~~~VaIvGasgk~G~~~~~~l~~~-g~-~iv~~VnP~~   77 (331)
                      |+.++.  .+..+|+|||+ |.||..+...|.+. |+ +++ .+|.+.
T Consensus         8 ~~~~~~~~~~~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~-~~D~~~   53 (478)
T 3g79_A            8 LEKLLKERGPIKKIGVLGM-GYVGIPAAVLFADAPCFEKVL-GFQRNS   53 (478)
T ss_dssp             HHHHHHHHCSCCEEEEECC-STTHHHHHHHHHHSTTCCEEE-EECCCC
T ss_pred             HHHHHhhcCCCCEEEEECc-CHHHHHHHHHHHHhCCCCeEE-EEECCh
Confidence            555552  23568999999 99999999999999 99 877 555443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.42  E-value=0.028  Score=45.78  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----ecCccccc-C------HHHhhhcCCCCEEEEecChhh
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVFN-T------VAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i~G~p~y~-s------l~dl~~~~~iDlaii~vp~~~  111 (331)
                      +|+|+|+ |++|+.+++.|.+.|++++ .++.+.  +.     -.|++++. +      ++++.- .+.|++++++|.+.
T Consensus         9 ~viIiG~-G~~G~~la~~L~~~g~~v~-vid~~~--~~~~~~~~~g~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~~~   83 (140)
T 3fwz_A            9 HALLVGY-GRVGSLLGEKLLASDIPLV-VIETSR--TRVDELRERGVRAVLGNAANEEIMQLAHL-ECAKWLILTIPNGY   83 (140)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCH--HHHHHHHHTTCEEEESCTTSHHHHHHTTG-GGCSEEEECCSCHH
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEE-EEECCH--HHHHHHHHcCCCEEECCCCCHHHHHhcCc-ccCCEEEEECCChH
Confidence            4788999 9999999999999999877 666654  21     13555432 2      222211 26899999999765


Q ss_pred             HH-HHHHHHHHc
Q 020101          112 AA-AAILEAMEA  122 (331)
Q Consensus       112 ~~-~~v~~~~~~  122 (331)
                      .- .++..+.+.
T Consensus        84 ~n~~~~~~a~~~   95 (140)
T 3fwz_A           84 EAGEIVASARAK   95 (140)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            43 344545444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.41  E-value=0.01  Score=48.51  Aligned_cols=66  Identities=8%  Similarity=-0.037  Sum_probs=48.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcc--cccCHHHhhhcCCCCEEEEecChhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLP--VFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ..+|+|+|+ |.+|+.+++.+.+.|++ +..+|++... +.   ..|..  .+.+++++.+  +.|+++.+||...
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~Divi~at~~~~   92 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIK--NNDVIITATSSKT   92 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCEEEECSCHHHHHH--TCSEEEECSCCSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCceEeecCHHHHhc--CCCEEEEeCCCCC
Confidence            567899998 99999999988888998 5577776421 11   12333  4667888777  7899999999763

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.39  E-value=0.046  Score=49.23  Aligned_cols=85  Identities=13%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh----------
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP----------  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~----------  110 (331)
                      ...+|+|.|++|-+|+.+++.|.+.|++++ .++.+.  .+   +.-..+++++.++.++|++|-+....          
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~--~D---l~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~   84 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVI-PTDVQD--LD---ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYD   84 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEE-EECTTT--CC---TTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHH
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEE-eccCcc--CC---CCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcCHH
Confidence            457789999999999999999999999887 444332  11   22233455555422589999765321          


Q ss_pred             --------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 --------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 --------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                              ....+++.|.+.|+ .+|.+++
T Consensus        85 ~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS  113 (292)
T 1vl0_A           85 LAYKINAIGPKNLAAAAYSVGA-EIVQIST  113 (292)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC-eEEEech
Confidence                    13566777888888 4555554

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.37  E-value=0.038  Score=49.54  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=57.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeC-CCCCCcee--cCcccc-------cCHHHhhhcCCCCEEEEecCh--
Q 020101           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVT-PKKGGTEH--LGLPVF-------NTVAEAKAETKANASAIYVPP--  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~Vn-P~~~g~~i--~G~p~y-------~sl~dl~~~~~iDlaii~vp~--  109 (331)
                      +|+|.|++|.+|+.+++.|.+.  |+++++... +... ...  .++..+       .+++++.+  ++|+++.+...  
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~   78 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA-STLADQGVEVRHGDYNQPESLQKAFA--GVSKLLFISGPHY   78 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT-HHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECCCCCS
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH-hHHhhcCCeEEEeccCCHHHHHHHHh--cCCEEEEcCCCCc
Confidence            4788999999999999999887  888875433 2211 111  122222       23455555  79999977643  


Q ss_pred             ------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                            .....+++.|.+.|++.++.+++
T Consensus        79 ~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss  107 (287)
T 2jl1_A           79 DNTLLIVQHANVVKAARDAGVKHIAYTGY  107 (287)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                  24566778888899988776665

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.36  E-value=0.11  Score=48.17  Aligned_cols=90  Identities=12%  Similarity=0.075  Sum_probs=58.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee------------cCccc-------ccCHHHhhhcCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH------------LGLPV-------FNTVAEAKAETKA  100 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i------------~G~p~-------y~sl~dl~~~~~i  100 (331)
                      +..+|+|.|++|-+|+.+++.|.+.|+++++... +....+..            .++..       ..+++++.+  ++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CC
Confidence            4567899999999999999999999999874432 21100000            12222       223555555  79


Q ss_pred             CEEEEecChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          101 NASAIYVPPP------------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       101 Dlaii~vp~~------------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      |++|-+....                  ....+++.|.+.|++.+|.+++
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  153 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS  153 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            9999775421                  1345677788889988776664

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.32  E-value=0.13  Score=47.49  Aligned_cols=92  Identities=18%  Similarity=0.200  Sum_probs=57.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-ee---cCcccc-------cCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH---LGLPVF-------NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~i---~G~p~y-------~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +.++|+|.|++|.+|+.+++.|.+.|+++++......... ..   .++..+       .+++++.+..++|++|-+...
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            4567899999999999999999999999885433211001 01   122212       234455542238999876432


Q ss_pred             ---------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 ---------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ---------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                     .....+++.|.+.|++.+|.+++
T Consensus       100 ~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS  137 (333)
T 2q1w_A          100 YKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT  137 (333)
T ss_dssp             CSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence                           12456777888888877776654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.26  E-value=0.16  Score=46.44  Aligned_cols=91  Identities=18%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC--------------CC-cee--cCcccccCHHHhhhcCCCCE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--------------GG-TEH--LGLPVFNTVAEAKAETKANA  102 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~--------------~g-~~i--~G~p~y~sl~dl~~~~~iDl  102 (331)
                      ++..+|+|.|++|-+|+.+++.|.+.|+++++.+....              .+ ..+  ..+.-..+++++.+  ++|+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~   86 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--CCCE
Confidence            35567899999999999999999999999874433110              00 001  11222233445444  6899


Q ss_pred             EEEecCh---------------hhHHHHHHHHHH-cCCcEEEEecC
Q 020101          103 SAIYVPP---------------PFAAAAILEAME-AELDLVVCITE  132 (331)
Q Consensus       103 aii~vp~---------------~~~~~~v~~~~~-~Gi~~ivi~t~  132 (331)
                      +|-+...               .....+++.|.+ .+++.+|.+++
T Consensus        87 vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           87 VAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            9976532               123455666663 57888777765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.25  E-value=0.073  Score=42.87  Aligned_cols=86  Identities=12%  Similarity=-0.002  Sum_probs=52.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccc-cC------HHHhhhcCCCCEEEEecChhhH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVF-NT------VAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y-~s------l~dl~~~~~iDlaii~vp~~~~  112 (331)
                      .+|+|+|+ |++|+.+++.|.+.|++++ .++.+... +.  -.|..++ -+      ++++.- .+.|++++++|.+..
T Consensus         7 ~~v~I~G~-G~iG~~la~~L~~~g~~V~-~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            7 YEYIVIGS-EAAGVGLVRELTAAGKKVL-AVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDL-EGVSAVLITGSDDEF   83 (141)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCC-TTCSEEEECCSCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCc-ccCCEEEEecCCHHH
Confidence            45889999 9999999999999999877 66654310 00  1243322 12      222211 268999999985443


Q ss_pred             -HHHHHHHHHcCCcEEEEec
Q 020101          113 -AAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       113 -~~~v~~~~~~Gi~~ivi~t  131 (331)
                       ..++..+-+.+...++...
T Consensus        84 n~~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           84 NLKILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             HHHHHHHHHHHCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCceEEEEE
Confidence             4445556566755544433

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.13  E-value=0.35  Score=47.35  Aligned_cols=106  Identities=13%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-----cCccccc-CHHHhhh-------------cCCCCE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVFN-TVAEAKA-------------ETKANA  102 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-----~G~p~y~-sl~dl~~-------------~~~iDl  102 (331)
                      ..+.-|||. |.+|.....+|.+.|++++ ++|.+.  +.+     ...|+|. .++++..             -.+.|+
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~~V~-~~D~~~--~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDv   86 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGVDVL-GVDINQ--QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDV   86 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSE
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCCEEE-EEECCH--HHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCE
Confidence            345677999 9999999999999999987 666554  221     2345554 4554421             025899


Q ss_pred             EEEecChhh------------HHHHHHHHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCC
Q 020101          103 SAIYVPPPF------------AAAAILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSK  151 (331)
Q Consensus       103 aii~vp~~~------------~~~~v~~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g  151 (331)
                      +++++|...            +..+.+...+ ..-..+|+..+..+....+++.+...++.|
T Consensus        87 vii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g  148 (431)
T 3ojo_A           87 FIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLG  148 (431)
T ss_dssp             EEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTT
T ss_pred             EEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcC
Confidence            999998865            4555555444 233456667777776655555443223344

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.12  E-value=0.068  Score=48.45  Aligned_cols=88  Identities=10%  Similarity=0.011  Sum_probs=55.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC----CCce---ecCcc-cccCHHHhhhcCCCCEEEEecCh----
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK----GGTE---HLGLP-VFNTVAEAKAETKANASAIYVPP----  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~----~g~~---i~G~p-~y~sl~dl~~~~~iDlaii~vp~----  109 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|+++++......    ....   ....+ +-.-..|+.   ++|+++-+...    
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---~~d~vi~~a~~~~~~   83 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS---DVRLVYHLASHKSVP   83 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---TEEEEEECCCCCCHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---cCCEEEECCccCChH
Confidence            467899999999999999999999999884432211    0011   11101 111123332   57888865432    


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 -------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                   .....+++.|.+.|++.+|.+++
T Consensus        84 ~~~~~~~~~~~n~~~~~~ll~a~~~~~v~~~v~~SS  119 (321)
T 3vps_A           84 RSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGST  119 (321)
T ss_dssp             HHTTSTTTTHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Confidence                         12356788888999988776664

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=94.08  E-value=0.031  Score=52.95  Aligned_cols=106  Identities=14%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-ecCcccccCHHHhhhcCCCCEEEEecChhh-HHHH--H
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAA--I  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i~G~p~y~sl~dl~~~~~iDlaii~vp~~~-~~~~--v  116 (331)
                      +..+|.|+|. |++|+.+.+.+..+|.+++ ..||...... ..+. .|.+++++..  +.|++++.+|-.. ...+  -
T Consensus       140 ~g~tvGIiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~-~~~~l~ell~--~sDivslh~Plt~~T~~li~~  214 (334)
T 3kb6_A          140 NRLTLGVIGT-GRIGSRVAMYGLAFGMKVL-CYDVVKREDLKEKGC-VYTSLDELLK--ESDVISLHVPYTKETHHMINE  214 (334)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-EECCHHHHHH--HCSEEEECCCCCTTTTTCBCH
T ss_pred             cCcEEEEECc-chHHHHHHHhhcccCceee-ecCCccchhhhhcCc-eecCHHHHHh--hCCEEEEcCCCChhhccCcCH
Confidence            3456889999 9999999999999999988 7787652111 1232 4678999998  6899999998532 2222  2


Q ss_pred             HHHHHcCCcEEE-EecCCCChhHHHHHHHHHhccCCcE
Q 020101          117 LEAMEAELDLVV-CITEGIPQHDMVRVKAALNNQSKTR  153 (331)
Q Consensus       117 ~~~~~~Gi~~iv-i~t~G~~e~~~~~l~~~a~~~~gi~  153 (331)
                      +.....+-..++ +.+-|- --+...|.++. ++..+.
T Consensus       215 ~~l~~mk~~a~lIN~aRG~-iVde~aL~~aL-~~g~i~  250 (334)
T 3kb6_A          215 ERISLMKDGVYLINTARGK-VVDTDALYRAY-QRGKFS  250 (334)
T ss_dssp             HHHHHSCTTEEEEECSCGG-GBCHHHHHHHH-HTTCEE
T ss_pred             HHHhhcCCCeEEEecCccc-cccHHHHHHHH-HhCCce
Confidence            333344444433 333341 12233455554 455444

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.00  E-value=0.14  Score=47.52  Aligned_cols=80  Identities=10%  Similarity=-0.036  Sum_probs=51.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCceecC-----------------cccccCHHHhhhcCCCCEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLG-----------------LPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~~i~G-----------------~p~y~sl~dl~~~~~iDla  103 (331)
                      ..+|+|||+ |.+|..+...+...|+ +++ .+|++.  +...+                 +....++++ .+  +.|++
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~-l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a-~~--~aDiV   76 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAE--GIPQGKALDITHSMVMFGSTSKVIGTDDYAD-IS--GSDVV   76 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GT--TCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCc--hHHHHHHHHHHhhhhhcCCCcEEEECCCHHH-hC--CCCEE
Confidence            467999999 9999999998888887 754 777654  21111                 112245533 33  68999


Q ss_pred             EEec--------------Ch--hhHHHHHHHHHHcCCcEEE
Q 020101          104 AIYV--------------PP--PFAAAAILEAMEAELDLVV  128 (331)
Q Consensus       104 ii~v--------------p~--~~~~~~v~~~~~~Gi~~iv  128 (331)
                      |+++              |.  +...++++++.+..-+.++
T Consensus        77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~ii  117 (317)
T 2ewd_A           77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFV  117 (317)
T ss_dssp             EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEE
Confidence            9998              32  3345666666666555534

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.00  E-value=0.055  Score=48.68  Aligned_cols=88  Identities=13%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC-CCc---ee-cCcccccCHHHhhhcCCCCEEEEecCh--------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-GGT---EH-LGLPVFNTVAEAKAETKANASAIYVPP--------  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~-~g~---~i-~G~p~y~sl~dl~~~~~iDlaii~vp~--------  109 (331)
                      .+|+|.|+ |-+|+.+++.|.+.|+++++...... ...   .+ ..+.-..+++++.+. ++|++|-+...        
T Consensus         4 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~vih~a~~~~~~~~~~   81 (286)
T 3gpi_A            4 SKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHL-RPEILVYCVAASEYSDEHY   81 (286)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGG-CCSEEEECHHHHHHC----
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcC-CCCEEEEeCCCCCCCHHHH
Confidence            56889995 99999999999999999884432211 000   01 122222334444442 49999977633        


Q ss_pred             -----hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 -----PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 -----~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                           .....+++.|.+.|++.++.+++
T Consensus        82 ~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           82 RLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             -CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence                 23566777777788888776664

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.92  E-value=0.14  Score=47.66  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCcee---cCcccc--------cCHHHhhhcCCCCEEEEecC-
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH---LGLPVF--------NTVAEAKAETKANASAIYVP-  108 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i---~G~p~y--------~sl~dl~~~~~iDlaii~vp-  108 (331)
                      ..+|+|.|++|-+|+.+++.|.+. |+++++.......-...   .++..+        .+++++.+  ++|++|-+.. 
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~--~~d~Vih~A~~  101 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK--KCDVILPLVAI  101 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--HCSEEEECBCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--cCCEEEEcCcc
Confidence            467899999999999999999987 89988544322110111   122222        23555555  6999996432 


Q ss_pred             --h---------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 --P---------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 --~---------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                        +               .....+++.|.+.| +.+|.+++
T Consensus       102 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS  141 (372)
T 3slg_A          102 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPST  141 (372)
T ss_dssp             CCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECC
T ss_pred             ccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCc
Confidence              1               11245788888888 77676665

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.86  E-value=0.1  Score=51.38  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             hhhhhhhhcccccccCCCC----CCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee
Q 020101            7 SRVVRSLYMSSEICCGQSR----SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH   82 (331)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i   82 (331)
                      +|-.|.+|....-+-....    ++...+       ..+..+|+|||+ |.||..+...+.+.|++++ .+|++.  +..
T Consensus         5 ~~~l~~~f~~~~~~~~~~~~~~~~~~~~~-------~~~~~kV~VIGa-G~MG~~iA~~la~~G~~V~-l~D~~~--~~~   73 (463)
T 1zcj_A            5 AKALQYAFFAEKSANKWSTPSGASWKTAS-------AQPVSSVGVLGL-GTMGRGIAISFARVGISVV-AVESDP--KQL   73 (463)
T ss_dssp             HHHHHHHHHGGGGGGSCBCTTCCBTTTCC-------CCCCCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSH--HHH
T ss_pred             HHHHHHHHHHHHHhcCCCCccCCCccccc-------cCCCCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEECCH--HHH
Confidence            4556788877655544221    112211       112357899999 9999999999999999876 667653  110


Q ss_pred             ----------------cC-----------cccccCHHHhhhcCCCCEEEEecChhhH--HHHHHHHH
Q 020101           83 ----------------LG-----------LPVFNTVAEAKAETKANASAIYVPPPFA--AAAILEAM  120 (331)
Q Consensus        83 ----------------~G-----------~p~y~sl~dl~~~~~iDlaii~vp~~~~--~~~v~~~~  120 (331)
                                      .|           ..+..+++++ .  +.|++|.++|.+..  .+++.++.
T Consensus        74 ~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~--~aDlVIeaVpe~~~~k~~v~~~l~  137 (463)
T 1zcj_A           74 DAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL-S--TVDLVVEAVFEDMNLKKKVFAELS  137 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGGG-T--TCSEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHHH-C--CCCEEEEcCCCCHHHHHHHHHHHH
Confidence                            01           1233456443 3  68999999997642  44444443

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.82  E-value=0.22  Score=46.65  Aligned_cols=89  Identities=8%  Similarity=-0.075  Sum_probs=55.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCCce---ec--C----cccc---cCHHHhhhcCCCCEEEEe
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGGTE---HL--G----LPVF---NTVAEAKAETKANASAIY  106 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g~~---i~--G----~p~y---~sl~dl~~~~~iDlaii~  106 (331)
                      +.+||+|+||+|..|+.+...|.+.|  .+++ .+|.......   +.  .    +..+   .++++..+  +.|+++++
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~-l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~--gaDvVi~~   83 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLH-LYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT--GMDLIIVP   83 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEE-EEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT--TCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC--CCCEEEEc
Confidence            45789999988999999888887777  4555 5553321001   10  1    1111   13455555  79999998


Q ss_pred             cCh----------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          107 VPP----------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       107 vp~----------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .+.                +...++++.+.+.+.+.++++.+
T Consensus        84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            742                33566778888888877665544

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=93.70  E-value=0.16  Score=47.32  Aligned_cols=89  Identities=11%  Similarity=-0.076  Sum_probs=55.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHH--cCCeEEEEeC-CC------------CCCcee---------cCcccccCHHHh-h
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVT-PK------------KGGTEH---------LGLPVFNTVAEA-K   95 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~--~g~~iv~~Vn-P~------------~~g~~i---------~G~p~y~sl~dl-~   95 (331)
                      +..+|+|.|++|-+|+.+++.|.+  .|+++++... +.            ..-...         ..+.-..+++++ .
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   88 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEK   88 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhc
Confidence            456789999999999999999998  8999885432 21            000001         111112234555 3


Q ss_pred             hcCCCCEEEEecCh----------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101           96 AETKANASAIYVPP----------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        96 ~~~~iDlaii~vp~----------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .  ++|++|-+...                .....+++.|.+.|++ +|.+++
T Consensus        89 ~--~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS  138 (362)
T 3sxp_A           89 L--HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS  138 (362)
T ss_dssp             S--CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             c--CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence            3  79999965431                2234677888888888 666665

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=93.59  E-value=0.098  Score=47.34  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCCce-ecCcc-------cccCHHHhhhcCCCCEEEEecCh---
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGGTE-HLGLP-------VFNTVAEAKAETKANASAIYVPP---  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g~~-i~G~p-------~y~sl~dl~~~~~iDlaii~vp~---  109 (331)
                      ++|+|.|++|-+|+.+++.|.+.  |+++++.. .+..... ..++.       -..+++++.++.++|++|-+...   
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~-r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~   81 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTENVIASD-IRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSA   81 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE-SCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHH
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc-CCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCC
Confidence            45889999999999999999887  78877443 2221111 11111       12234555543468999977432   


Q ss_pred             --------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                    .....+++.|.+.|++.++.+++
T Consensus        82 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  118 (312)
T 2yy7_A           82 TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSS  118 (312)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEE
T ss_pred             chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence                          11335667777788877665554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.58  E-value=0.078  Score=49.68  Aligned_cols=78  Identities=9%  Similarity=0.040  Sum_probs=55.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC-------------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP-------------  108 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp-------------  108 (331)
                      ++|+|.|++|.+|+.+++.|.+.|+ +++ .+|...         -..+++++.+  ++|+++-+..             
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~-~~d~~~---------d~~~l~~~~~--~~d~Vih~a~~~~~~~~~~~~~~   68 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIF-EVHRQT---------KEEELESALL--KADFIVHLAGVNRPEHDKEFSLG   68 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEE-ECCTTC---------CHHHHHHHHH--HCSEEEECCCSBCTTCSTTCSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEE-EECCCC---------CHHHHHHHhc--cCCEEEECCcCCCCCCHHHHHHH
Confidence            3688999999999999999999898 877 555521         1234566665  6899886642             


Q ss_pred             -hhhHHHHHHHHHHcCCc-EEEEecC
Q 020101          109 -PPFAAAAILEAMEAELD-LVVCITE  132 (331)
Q Consensus       109 -~~~~~~~v~~~~~~Gi~-~ivi~t~  132 (331)
                       -.....+++.|.+.|++ .++.+++
T Consensus        69 n~~~~~~l~~a~~~~~~~~~~v~~Ss   94 (369)
T 3st7_A           69 NVSYLDHVLDILTRNTKKPAILLSSS   94 (369)
T ss_dssp             CCBHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEeCc
Confidence             22356688888888987 6665554

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.56  E-value=0.16  Score=46.69  Aligned_cols=90  Identities=10%  Similarity=-0.028  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC------Cc------------e---e-cCcccccCHHHhhhcCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------GT------------E---H-LGLPVFNTVAEAKAETKA  100 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~------g~------------~---i-~G~p~y~sl~dl~~~~~i  100 (331)
                      .+|+|.|++|-+|+.+++.|.+.|+++++.......      ..            .   + ..+.-..+++++.++.++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF   82 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCC
Confidence            468899999999999999999999998744321110      00            0   0 011111234444443358


Q ss_pred             CEEEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          101 NASAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       101 Dlaii~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      |++|-+...                  .....+++.|.+.|++.+|.+++
T Consensus        83 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  132 (348)
T 1ek6_A           83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS  132 (348)
T ss_dssp             EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence            988866532                  11345667777788887776664

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.55  E-value=0.15  Score=47.10  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCC-c----eec--------Cccc-ccCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG-T----EHL--------GLPV-FNTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g-~----~i~--------G~p~-y~sl~dl~~~~~iDlaii~  106 (331)
                      .+|+|||+ |.+|..+...|.+.|  .+++ .+|.+... +    +..        ...+ ..+.++ .+  +.|+++++
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~-~~--~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAA-LA--DADVVIST   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGG-GT--TCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHH-hC--CCCEEEEe
Confidence            47899997 999999999888877  5665 77765310 0    010        1223 234533 33  68999999


Q ss_pred             cChhh--------------------HHHHHHHHHHcCCcEE-EEecC
Q 020101          107 VPPPF--------------------AAAAILEAMEAELDLV-VCITE  132 (331)
Q Consensus       107 vp~~~--------------------~~~~v~~~~~~Gi~~i-vi~t~  132 (331)
                      +|...                    ..++++++.+...+.+ +++|-
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tN  123 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            98755                    3566777766554443 33443

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=93.50  E-value=0.27  Score=44.02  Aligned_cols=87  Identities=13%  Similarity=0.032  Sum_probs=55.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCe---EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh-------
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-------  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~---iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-------  110 (331)
                      +.++|+|.|++|-+|+.+++.|.+.|+.   ....+....     ..+.-..+++++.+..++|++|-+....       
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~-----~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~   79 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD-----ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNI   79 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTT-----CCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHT
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCcee-----cccCCHHHHHHHHhhcCCCEEEECceecccccccc
Confidence            3567899999999999999999988761   111122111     1122223466666644599999764221       


Q ss_pred             ------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                  ....+++.|.+.|++.+|.+++
T Consensus        80 ~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS  113 (319)
T 4b8w_A           80 KYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS  113 (319)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence                        1234678888899988776565

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.47  E-value=0.12  Score=47.30  Aligned_cols=91  Identities=9%  Similarity=0.116  Sum_probs=54.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--ee------cCcccc-------cCHHHhhhcCCCCEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EH------LGLPVF-------NTVAEAKAETKANASAIY  106 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i------~G~p~y-------~sl~dl~~~~~iDlaii~  106 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|+++++.........  .+      .++..+       .+++++.+..++|++|-+
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   82 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL   82 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence            356889999999999999999999999874432211000  00      012222       224444442247999876


Q ss_pred             cChh------------------hHHHHHHHHHHcCC-cEEEEecC
Q 020101          107 VPPP------------------FAAAAILEAMEAEL-DLVVCITE  132 (331)
Q Consensus       107 vp~~------------------~~~~~v~~~~~~Gi-~~ivi~t~  132 (331)
                      ....                  ....+++.|.+.++ +.+|.+++
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  127 (345)
T 2z1m_A           83 AAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST  127 (345)
T ss_dssp             CCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence            5321                  13456677777786 66666654

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=93.45  E-value=0.19  Score=47.88  Aligned_cols=92  Identities=16%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--------------Cc---e---------ecC--ccccc--
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------------GT---E---------HLG--LPVFN--   89 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--------------g~---~---------i~G--~p~y~--   89 (331)
                      .+.++|+|.|. |++|+.++|.+.+.+.++++.-||..+              |+   +         +.|  ++++.  
T Consensus         5 ~~~~kvgInGF-GRIGrlv~R~~~~~~veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   83 (346)
T 3h9e_O            5 ARELTVGINGF-GRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK   83 (346)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CCeeEEEEECC-ChHHHHHHHHHHhCCCEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence            35688999999 999999999888888999976666321              10   0         223  23442  


Q ss_pred             CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        90 sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +.++++= +.++|+++-++......+-+...++.|.|.++|-.+
T Consensus        84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsap  127 (346)
T 3h9e_O           84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAP  127 (346)
T ss_dssp             SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred             ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence            4555551 236999999999988888899999999998776443

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.45  E-value=0.19  Score=45.96  Aligned_cols=92  Identities=13%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--------eecCccc-------ccCHHHhhhcCCCCEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------EHLGLPV-------FNTVAEAKAETKANASAI  105 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--------~i~G~p~-------y~sl~dl~~~~~iDlaii  105 (331)
                      .+.+|.|.|++|-+|+.+++.|.+.|+++++.........        .-.++..       ..+++++.+..++|++|-
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih   92 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   92 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence            3577899999999999999999999999875443221000        0011211       123444444224799886


Q ss_pred             ecChh------------------hHHHHHHHHHHcCC-cEEEEecC
Q 020101          106 YVPPP------------------FAAAAILEAMEAEL-DLVVCITE  132 (331)
Q Consensus       106 ~vp~~------------------~~~~~v~~~~~~Gi-~~ivi~t~  132 (331)
                      +....                  ....+++.|.+.|+ +.+|.+++
T Consensus        93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  138 (335)
T 1rpn_A           93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST  138 (335)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            64321                  13356777777886 67666654

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=93.42  E-value=0.071  Score=48.06  Aligned_cols=84  Identities=15%  Similarity=0.049  Sum_probs=53.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-cCcccccCHHHhhhcCCCCEEEEecChh------------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-~G~p~y~sl~dl~~~~~iDlaii~vp~~------------  110 (331)
                      +|+|.|++|.+|+.+++.|. .|++++ .++.+.  ..+ ..+.-..+++++.+..++|+++-+....            
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~-~~~r~~--~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~   77 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLI-ALDVHS--KEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA   77 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEE-EECTTC--SSSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEE-Eecccc--ccccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHHH
Confidence            68899999999999999988 799988 444332  111 1222233455555522489999775321            


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                            ....+++.|.+.|++ ++.+++
T Consensus        78 ~~~n~~~~~~l~~a~~~~~~~-~v~~SS  104 (299)
T 1n2s_A           78 QLLNATSVEAIAKAANETGAW-VVHYST  104 (299)
T ss_dssp             HHHHTHHHHHHHHHHTTTTCE-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-EEEEec
Confidence                  145667777777885 454554

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=93.41  E-value=0.15  Score=46.31  Aligned_cols=89  Identities=13%  Similarity=0.078  Sum_probs=54.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEe-CCCCC-C-cee-cCcccccCHHHhhhcCCCCEEEEecChh-------
Q 020101           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKG-G-TEH-LGLPVFNTVAEAKAETKANASAIYVPPP-------  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~V-nP~~~-g-~~i-~G~p~y~sl~dl~~~~~iDlaii~vp~~-------  110 (331)
                      +|+|.|++|-+|+.+++.|.+.  |+++++.. ++... + ..+ ..+.-..+++++.++.++|+++-+....       
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~   80 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKD   80 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccccC
Confidence            3788999999999999998887  78877432 22210 0 001 1111122355555434699999765321       


Q ss_pred             ----------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ----------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ----------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                ....+++.|.+.|++.++.+++
T Consensus        81 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  112 (317)
T 3ajr_A           81 PALAYKVNMNGTYNILEAAKQHRVEKVVIPST  112 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hHHHhhhhhHHHHHHHHHHHHcCCCEEEEecC
Confidence                      1345677788889987776654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.36  E-value=0.12  Score=46.91  Aligned_cols=88  Identities=16%  Similarity=0.111  Sum_probs=50.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-cee-cCcccccCHHHhhhcCCCCEEEEecChh----------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLPVFNTVAEAKAETKANASAIYVPPP----------  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~i-~G~p~y~sl~dl~~~~~iDlaii~vp~~----------  110 (331)
                      .+|+|.|++|.+|+.+++.|.+.|+++++ ++.+... ..+ ..+.-..+++++.+..++|++|-+....          
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~   81 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNWHAVG-CGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPD   81 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEE-EC------------------CHHHHHHHCCSEEEECC-------------
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCeEEE-EccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCHH
Confidence            46889999999999999999999999874 4422100 000 1111223444554422489988765321          


Q ss_pred             --------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 --------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 --------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                              ....+++.|.+.|++ +|.+++
T Consensus        82 ~~~~~n~~~~~~l~~a~~~~~~~-~v~~SS  110 (315)
T 2ydy_A           82 AASQLNVDASGNLAKEAAAVGAF-LIYISS  110 (315)
T ss_dssp             ------CHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence                    135577778888875 454554

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=93.36  E-value=0.24  Score=45.83  Aligned_cols=90  Identities=18%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCcee-------cCccc-------ccCHHHhhhcCCCCEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEH-------LGLPV-------FNTVAEAKAETKANASAIY  106 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i-------~G~p~-------y~sl~dl~~~~~iDlaii~  106 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|+++++... +... ...       .++..       ..+++++.+..++|++|-+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV-PSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS-SCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCccc-chhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            457899999999999999999999999875432 2211 110       11211       1234455442248999977


Q ss_pred             cCh---h---------------hHHHHHHHHHHcC-CcEEEEecC
Q 020101          107 VPP---P---------------FAAAAILEAMEAE-LDLVVCITE  132 (331)
Q Consensus       107 vp~---~---------------~~~~~v~~~~~~G-i~~ivi~t~  132 (331)
                      ...   .               ....+++.|.+.+ ++.+|.+++
T Consensus        88 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           88 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             CCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            541   1               1234667777776 788777776

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.27  E-value=0.2  Score=49.44  Aligned_cols=124  Identities=12%  Similarity=0.007  Sum_probs=70.6

Q ss_pred             hhhhhhcccccccCCCCCCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c-------
Q 020101            9 VVRSLYMSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T-------   80 (331)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~-------   80 (331)
                      .||...|+.|--.++-.-++.+. .....-..+..+|+|||+ |.||..++..+.+.|++++ .+|++... .       
T Consensus        22 ~~~~~~~~a~~~~~~w~~p~~~~-~~~~~~~~~i~kVaVIGa-G~MG~~IA~~la~aG~~V~-l~D~~~e~a~~~i~~~l   98 (460)
T 3k6j_A           22 EVRSYLMEAHSLAGQWSLPNDRG-DHTNSEAYDVNSVAIIGG-GTMGKAMAICFGLAGIETF-LVVRNEQRCKQELEVMY   98 (460)
T ss_dssp             HHHHHHHHTTCCTTSCBCSTTSC-BTTSCCCCCCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhhccccCCCCcc-ccccCCcccCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEECcHHHHHHHHHHHH
Confidence            46777777776665533332110 000111123467999999 9999999999999999977 66665410 0       


Q ss_pred             -e--ecC-------------cccccCHHHhhhcCCCCEEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCChhH
Q 020101           81 -E--HLG-------------LPVFNTVAEAKAETKANASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIPQHD  138 (331)
Q Consensus        81 -~--i~G-------------~p~y~sl~dl~~~~~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~iv-i~t~G~~e~~  138 (331)
                       .  -.|             +....+++++ .  +.|++|.++|.+.  -.+++.++.+. .-..++ .-|++++.++
T Consensus        99 ~~~~~~G~l~~~~~~~~~~~i~~t~dl~al-~--~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~  173 (460)
T 3k6j_A           99 AREKSFKRLNDKRIEKINANLKITSDFHKL-S--NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNE  173 (460)
T ss_dssp             HHHHHTTSCCHHHHHHHHTTEEEESCGGGC-T--TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH
T ss_pred             HHHHHcCCCCHHHHHHHhcceEEeCCHHHH-c--cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHH
Confidence             0  011             2234456543 3  6899999999753  33455554432 223433 2456666443

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=93.24  E-value=0.16  Score=46.09  Aligned_cols=89  Identities=17%  Similarity=0.172  Sum_probs=54.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-ee-cCcccc-------cCHHHhhhcCCCCEEEEecChh----
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH-LGLPVF-------NTVAEAKAETKANASAIYVPPP----  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~i-~G~p~y-------~sl~dl~~~~~iDlaii~vp~~----  110 (331)
                      +|+|.|++|-+|+.+++.|.+.|+++++......... .. .++..+       .+++++.++..+|.++.+....    
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~   81 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKV   81 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCchh
Confidence            5889999999999999999999999874332111001 11 122211       2244444322589888664211    


Q ss_pred             --------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 --------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 --------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                    ....+++.|.+.|++.+|.+++
T Consensus        82 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  117 (311)
T 2p5y_A           82 SVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST  117 (311)
T ss_dssp             HHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                          1345667777888888776665

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=93.23  E-value=0.1  Score=46.78  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      .+|+|.|++|-+|+.+.+.|.+.|++++.
T Consensus         4 k~vlVTGasg~IG~~la~~L~~~G~~V~~   32 (267)
T 3rft_A            4 KRLLVTGAAGQLGRVMRERLAPMAEILRL   32 (267)
T ss_dssp             EEEEEESTTSHHHHHHHHHTGGGEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            56888999999999999999998988763

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=93.04  E-value=0.27  Score=44.28  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |..|..++++|...|..-+..+|+..
T Consensus        27 ~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           27 LDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             hcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3567899999 88999999999999985444887764

>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1

Probab=93.02  E-value=0.16  Score=46.93  Aligned_cols=117  Identities=13%  Similarity=0.103  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      .+|+|+|+ |..|...+..++..    .+.+++..++..-++-+.|.|+++ .+|+... +.|-++|+..- .-.++=.+
T Consensus         2 ~~~~I~g~-~~~~~~a~n~~~~~~~~~~~~i~~~~~~dk~a~~idg~~v~s-~~~i~~~-e~DyiiIa~~~-~~~qi~~~   77 (306)
T 2g6t_A            2 YKCLIWGV-NDEYTLAYDKLLFEISKGNLSIEALISKDKYAKYIDGKEVID-KTEISNY-EFDYIIIFNKE-RYSDIKNE   77 (306)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHTTSEEEEEEECSSCSCSBSSSCBEEC-GGGGGGS-CCSEEEECCTT-THHHHHHH
T ss_pred             ceEEEEec-cHHHHHHHHHHHHHhhcccceEEEEecchhhhhhhCCeeccC-HHHHhcC-CCCEEEEeccc-cHHHHHHH
Confidence            46889999 66777777665532    378888788776667899999997 4555542 79999999776 56666677


Q ss_pred             HHHcCCcEEEEecCCC---ChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101          119 AMEAELDLVVCITEGI---PQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~---~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p  165 (331)
                      +++.||+.==|++-.+   +.-+.++-.+ . +.+++.||-.||.|-.-.
T Consensus        78 l~~~gi~~~ki~~~~~~~i~~~~~~r~~r-L-~N~~~TIISnNC~Gg~iy  125 (306)
T 2g6t_A           78 ALELGIPERKILNGKFFFISNFDFKRYCK-L-IENPITIISDDCWGGLVS  125 (306)
T ss_dssp             HHHTTCCGGGEECSGGGGSTTCCHHHHHH-H-HHTTCEEEESSSHHHHHH
T ss_pred             HHHcCCchhheeeeEEEecccccHHHHHH-h-cCCCcEEEecCchhHHHH
Confidence            7798875422233321   2223332222 2 578899999999875443

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=92.97  E-value=0.2  Score=47.49  Aligned_cols=86  Identities=15%  Similarity=0.023  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCC-------------CCCC----------ce--ecC--ccccc--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTP-------------KKGG----------TE--HLG--LPVFN--   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP-------------~~~g----------~~--i~G--~p~y~--   89 (331)
                      +||+|.|+ |++|+.+++.+.+.    ++++++.-++             ...|          +.  +.|  ++++.  
T Consensus         2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~   80 (335)
T 1obf_O            2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR   80 (335)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence            68999999 99999999988776    5788866553             1100          11  223  23442  


Q ss_pred             CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        90 sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +.++++- +.++|+++.+++.....+.+...++.|.+.+++
T Consensus        81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi  121 (335)
T 1obf_O           81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII  121 (335)
T ss_dssp             CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred             CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEE
Confidence            4455542 237999999999888888888999999998665

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=92.93  E-value=0.27  Score=44.46  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccc-cC-----HHHhhhcCCCCEEEEecCh-----
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVF-NT-----VAEAKAETKANASAIYVPP-----  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y-~s-----l~dl~~~~~iDlaii~vp~-----  109 (331)
                      +|+|.|++|-+|+.+++.|.+.|+++++ ++..... ..  ..++..+ -+     +.++.+  . |++|-+...     
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~-d~vih~A~~~~~~~   77 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVV-VDNLSSGRREFVNPSAELHVRDLKDYSWGAGIK--G-DVVFHFAANPEVRL   77 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE-ECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCC--C-SEEEECCSSCSSSG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEE-EeCCCCCchhhcCCCceEEECccccHHHHhhcC--C-CEEEECCCCCCchh
Confidence            6889999999999999999999999874 3322110 11  1122211 12     222222  3 888865431     


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 -------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                   ..+..+++.|.+.|++.+|.+++
T Consensus        78 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  113 (312)
T 3ko8_A           78 STTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS  113 (312)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence                         12346778888889988776665

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.91  E-value=0.11  Score=46.41  Aligned_cols=88  Identities=15%  Similarity=0.112  Sum_probs=55.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcccc-cCHHHhhhcCCCCEEEEecCh-----hhHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVF-NTVAEAKAETKANASAIYVPP-----PFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p~y-~sl~dl~~~~~iDlaii~vp~-----~~~~~  114 (331)
                      ++|+|.|+ |.+|+.+++.|.+.|+++++.+........  -.++..+ -++.++. -.++|++|-+...     .....
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~~~~~~   83 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGDPVLAA   83 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBCHHHHH
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCccccccHHHHH
Confidence            57899998 999999999999999998854332210000  1233322 2333322 2379999987743     22455


Q ss_pred             HHHHHHH--cCCcEEEEecC
Q 020101          115 AILEAME--AELDLVVCITE  132 (331)
Q Consensus       115 ~v~~~~~--~Gi~~ivi~t~  132 (331)
                      +++.|.+  .+++.+|.+++
T Consensus        84 l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           84 LGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             HHHHHHHTGGGCSEEEEEEE
T ss_pred             HHHHHHhhcCCceEEEEeec
Confidence            6666666  68888776554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=92.87  E-value=0.093  Score=52.12  Aligned_cols=88  Identities=17%  Similarity=0.096  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee----------------cC-------------cccccCHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------LG-------------LPVFNTVAE   93 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i----------------~G-------------~p~y~sl~d   93 (331)
                      .+|+|||+ |.||..++..+.+.|++++ .+|++.  +..                .|             +....++++
T Consensus         6 ~kVgVIGa-G~MG~~IA~~la~aG~~V~-l~D~~~--e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (483)
T 3mog_A            6 QTVAVIGS-GTMGAGIAEVAASHGHQVL-LYDISA--EALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA   81 (483)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCH--HHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCeEE-EEECCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH
Confidence            46889999 9999999999999999876 667654  211                11             223445654


Q ss_pred             hhhcCCCCEEEEecChhhH--HHHHHHHHHc-CCcEEE-EecCCCChh
Q 020101           94 AKAETKANASAIYVPPPFA--AAAILEAMEA-ELDLVV-CITEGIPQH  137 (331)
Q Consensus        94 l~~~~~iDlaii~vp~~~~--~~~v~~~~~~-Gi~~iv-i~t~G~~e~  137 (331)
                      + +  +.|++|.++|.+..  .+++.++.+. .-..++ .-+++++.+
T Consensus        82 ~-~--~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~  126 (483)
T 3mog_A           82 L-A--AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT  126 (483)
T ss_dssp             G-G--GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred             h-c--CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH
Confidence            4 3  58999999998743  4566665443 233344 346677654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.84  E-value=0.23  Score=46.70  Aligned_cols=88  Identities=10%  Similarity=-0.015  Sum_probs=56.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCC--c---ee------cC----cccccCHHHhhhcCCCCEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGG--T---EH------LG----LPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g--~---~i------~G----~p~y~sl~dl~~~~~iDla  103 (331)
                      ++..||+|+|+ |.+|..+...+...|+ +++ .+|.+...  .   ++      .+    +....++++..+  +.|++
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~-L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~--~aDiV   82 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GADCV   82 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEE-EEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC--CCCEE
Confidence            44578999999 9999999888888887 744 66655410  0   00      11    112356775455  78999


Q ss_pred             EEec--Chh-------------------hHHHHHHHHHHcCCcEEEEec
Q 020101          104 AIYV--PPP-------------------FAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       104 ii~v--p~~-------------------~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      |+++  |..                   ...++++++.+...+.+++..
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~  131 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVV  131 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            9998  532                   256677777777666655444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.64  E-value=0.22  Score=43.25  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=55.0

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCccccc----C---HHHhhhcCCCCEEEEecChhhH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFN----T---VAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~----s---l~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +|+|+|+ |++|+.+++.|.+.|++++ .++.+... +.   ..|.+++.    +   +++..- .+.|+++++++.+..
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~-vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~d~~   78 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVV-IINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEV-SKNDVVVILTPRDEV   78 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTC-CTTCEEEECCSCHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCc-ccCCEEEEecCCcHH
Confidence            5889998 9999999999999999877 66654310 11   12443332    2   333211 268999999998876


Q ss_pred             HHHHHHHHH--cCCcEEEEecC
Q 020101          113 AAAILEAME--AELDLVVCITE  132 (331)
Q Consensus       113 ~~~v~~~~~--~Gi~~ivi~t~  132 (331)
                      -..+...++  .+...++.-+.
T Consensus        79 n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           79 NLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCeEEEEEe
Confidence            555555444  46776565443

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=92.62  E-value=0.38  Score=45.06  Aligned_cols=31  Identities=19%  Similarity=0.188  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHH-HcCCeEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGV   73 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~-~~g~~iv~~V   73 (331)
                      ++|+|.|++|-+|+.+++.|. +.|+++++..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~   34 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEe
Confidence            478899999999999999999 8999987443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.52  E-value=0.3  Score=43.93  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK   77 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~   77 (331)
                      ..+|+|+|+ |..|..++++|...|. ++. .||+..
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~-lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLT-LLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEE-EEcCCC
Confidence            457899999 8999999999999997 455 888765

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=92.30  E-value=0.3  Score=44.24  Aligned_cols=85  Identities=13%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---------ecCcccccCHHHhhhcCCCCEEEEecCh-----
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------HLGLPVFNTVAEAKAETKANASAIYVPP-----  109 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---------i~G~p~y~sl~dl~~~~~iDlaii~vp~-----  109 (331)
                      +|+|.|++|-+|+.+++.|.+.| .++...+......+         ...+.- .++.++.+  ++|+++-+...     
T Consensus         3 ~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~d~vih~a~~~~~~~   78 (313)
T 3ehe_A            3 LIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLK--GAEEVWHIAANPDVRI   78 (313)
T ss_dssp             CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHT--TCSEEEECCCCCCCC-
T ss_pred             EEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhc--CCCEEEECCCCCChhh
Confidence            57899999999999999999888 44434433221011         012222 45666665  79999865431     


Q ss_pred             -------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 -------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 -------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                   .....+++.|.+.|++.+|.+++
T Consensus        79 ~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS  114 (313)
T 3ehe_A           79 GAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST  114 (313)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence                         12344677788889988777776

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=92.22  E-value=0.53  Score=43.01  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=54.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc---C---CeEEEEeCCCCCC--cee------cCcccc-------cCHHHhhhcCCCCE
Q 020101           44 RVICQGITGKNGTFHTEQAIEY---G---TKMVGGVTPKKGG--TEH------LGLPVF-------NTVAEAKAETKANA  102 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~---g---~~iv~~VnP~~~g--~~i------~G~p~y-------~sl~dl~~~~~iDl  102 (331)
                      +|+|.|++|-+|+.+++.|.+.   |   +++++.......+  +..      .++..+       .+++++..  ++|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   79 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVDA   79 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--TCCE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc--CCCE
Confidence            6889999999999999999885   7   8887443321100  111      112111       23444444  7999


Q ss_pred             EEEecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          103 SAIYVPP------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       103 aii~vp~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +|-+...                  .....+++.|.+.+++.+|.+++
T Consensus        80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS  127 (337)
T 1r6d_A           80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST  127 (337)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            9976532                  12346777888889987776664

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.20  E-value=0.081  Score=50.67  Aligned_cols=75  Identities=16%  Similarity=0.080  Sum_probs=52.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeC---CCCCC-ce-e--c----------C--c------c-cccCHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT---PKKGG-TE-H--L----------G--L------P-VFNTVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~Vn---P~~~g-~~-i--~----------G--~------p-~y~sl~dl~   95 (331)
                      ++|+|+|+ |.+|..+...|.+ .|+++. .++   +.... +. +  .          |  .      . +..++++..
T Consensus         3 mkI~ViGa-G~~G~~~a~~La~~~G~~V~-~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   80 (404)
T 3c7a_A            3 VKVCVCGG-GNGAHTLSGLAASRDGVEVR-VLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI   80 (404)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTSTTEEEE-EECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred             ceEEEECC-CHHHHHHHHHHHhCCCCEEE-EEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence            57899999 9999999998877 488766 666   32100 00 0  0          2  1      1 344677766


Q ss_pred             hcCCCCEEEEecChhhHHHHHHHHHH
Q 020101           96 AETKANASAIYVPPPFAAAAILEAME  121 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~~~~~v~~~~~  121 (331)
                      +  +.|++++++|+....++++++..
T Consensus        81 ~--~aD~Vilav~~~~~~~v~~~l~~  104 (404)
T 3c7a_A           81 S--GADVVILTVPAFAHEGYFQAMAP  104 (404)
T ss_dssp             T--TCSEEEECSCGGGHHHHHHHHTT
T ss_pred             C--CCCEEEEeCchHHHHHHHHHHHh
Confidence            5  68999999999999888887654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.18  E-value=0.13  Score=49.56  Aligned_cols=65  Identities=15%  Similarity=0.277  Sum_probs=43.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCc-e---ecCccc--ccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGT-E---HLGLPV--FNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~-~---i~G~p~--y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |.+|+.+++.+...|. +++ .+|+..... +   ..|..+  |.++.++..  +.|+++.+||.
T Consensus       166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~-v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~--~aDvVi~at~~  237 (404)
T 1gpj_A          166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVL-VANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAA  237 (404)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCCSEEE-EECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSS
T ss_pred             cCCEEEEECh-HHHHHHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHHcCCceecHHhHHHHhc--CCCEEEEccCC
Confidence            5677999999 9999999999999998 666 788764210 1   123322  234555544  56777777654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.06  E-value=0.24  Score=46.14  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceec--------C------cccc-cCHHHhhhcCCCCEEEEe
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHL--------G------LPVF-NTVAEAKAETKANASAIY  106 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~--------G------~p~y-~sl~dl~~~~~iDlaii~  106 (331)
                      +|+|||+ |.+|..++..+...|+  +++ .+|.+.  +...        +      ..+. .+.+++ .  +.|+++++
T Consensus         2 kI~VIGa-G~~G~~la~~l~~~g~~~~V~-l~D~~~--~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~--~aDvViia   74 (319)
T 1a5z_A            2 KIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDVDK--KRAEGDALDLIHGTPFTRRANIYAGDYADL-K--GSDVVIVA   74 (319)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH--HHHHHHHHHHHHHGGGSCCCEEEECCGGGG-T--TCSEEEEC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCCh--HHHHHHHHHHHhhhhhcCCcEEEeCCHHHh-C--CCCEEEEc
Confidence            6889999 9999999888888787  766 677653  1111        1      1111 233332 3  68999999


Q ss_pred             cChhh----------------HHHHHHHHHHcCCcEEE
Q 020101          107 VPPPF----------------AAAAILEAMEAELDLVV  128 (331)
Q Consensus       107 vp~~~----------------~~~~v~~~~~~Gi~~iv  128 (331)
                      +|...                ..++++++.+...+.++
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~i  112 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIV  112 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            98533                35666666665555433

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=91.67  E-value=0.07  Score=50.75  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCC---C----------CCC----------ce--ecC--ccccc--CHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTP---K----------KGG----------TE--HLG--LPVFN--TVA   92 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP---~----------~~g----------~~--i~G--~p~y~--sl~   92 (331)
                      +||+|.|+ |++|+.+++.+.+. .+++++.-+.   +          ..|          +.  +.|  ++++.  +.+
T Consensus         3 ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~   81 (342)
T 2ep7_A            3 IKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPS   81 (342)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCChh
Confidence            68999999 99999999988776 7899865443   1          011          01  122  23443  344


Q ss_pred             Hhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           93 EAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        93 dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++- +.++|+++.+++.....+.....++.|.+.+++
T Consensus        82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvi  119 (342)
T 2ep7_A           82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII  119 (342)
T ss_dssp             GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEE
T ss_pred             hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEe
Confidence            4431 126899999999988888889999999988664

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.66  E-value=0.39  Score=45.05  Aligned_cols=83  Identities=10%  Similarity=-0.028  Sum_probs=53.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCceec---------------C--cccccCHHHhhhcCCCCEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHL---------------G--LPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~~i~---------------G--~p~y~sl~dl~~~~~iDla  103 (331)
                      ..+|+|+|+ |.+|..+...+...|+ +++ .+|.+..  ...               .  +....++++ ..  +.|++
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~-L~Di~~~--~l~~~~~~l~~~~~~~~~~~~i~~t~d~~a-l~--~aD~V   86 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEG--VPQGKALDLNHCMALIGSPAKIFGENNYEY-LQ--NSDVV   86 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSTT--HHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GT--TCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEE-EEECCHH--HHHHHHHHHHhHhhccCCCCEEEECCCHHH-HC--CCCEE
Confidence            358999999 9999998888888887 744 7666542  111               1  112245533 33  68999


Q ss_pred             EEec--Ch--------------hhHHHHHHHHHHcCCcEEEEec
Q 020101          104 AIYV--PP--------------PFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       104 ii~v--p~--------------~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      |+++  |.              +...++++++.+...+.++++.
T Consensus        87 I~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  130 (328)
T 2hjr_A           87 IITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI  130 (328)
T ss_dssp             EECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEe
Confidence            9998  43              2355666777666666554433

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=91.59  E-value=0.47  Score=43.34  Aligned_cols=90  Identities=11%  Similarity=0.065  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCce-------------e-cCcccccCHHHhhhcCCCCEEEEec
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTE-------------H-LGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~-------------i-~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ++|+|.|++|-+|+.+++.|.+.|+++++... .......             + ..+.-..+++++.+..++|++|-+.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   81 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence            36889999999999999999999999874432 1110000             0 1111122355555522389999765


Q ss_pred             Chh------------------hHHHHHHHHHHcCCc-EEEEecC
Q 020101          108 PPP------------------FAAAAILEAMEAELD-LVVCITE  132 (331)
Q Consensus       108 p~~------------------~~~~~v~~~~~~Gi~-~ivi~t~  132 (331)
                      ...                  ....+++.|.+.+++ .+|.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS  125 (347)
T 1orr_A           82 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST  125 (347)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             cccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            421                  134567788888886 6665554

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=91.59  E-value=0.23  Score=47.16  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCC-ce----e---cC--cccccCHHHhhhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H---LG--LPVFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g-~~----i---~G--~p~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      ++..+|+|||+ |.+|+.+++.+.. .+.+.+...|++... +.    .   .|  +..+.+++++..  +.|+++.+||
T Consensus       127 ~~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~--~aDiVi~aTp  203 (350)
T 1x7d_A          127 PNARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVK--GVDIITTVTA  203 (350)
T ss_dssp             TTCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHT--TCSEEEECCC
T ss_pred             ccCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHh--cCCEEEEecc
Confidence            45678999999 9999999888754 466555588876421 11    1   15  346788998887  7999999999


Q ss_pred             hhhHHHHH-HHHHHcCCcE
Q 020101          109 PPFAAAAI-LEAMEAELDL  126 (331)
Q Consensus       109 ~~~~~~~v-~~~~~~Gi~~  126 (331)
                      ...+..++ .+.++.|.+.
T Consensus       204 s~~~~pvl~~~~l~~G~~V  222 (350)
T 1x7d_A          204 DKAYATIITPDMLEPGMHL  222 (350)
T ss_dssp             CSSEEEEECGGGCCTTCEE
T ss_pred             CCCCCceecHHHcCCCCEE
Confidence            76322222 2455667654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=91.57  E-value=1.1  Score=40.74  Aligned_cols=89  Identities=13%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCc-----ee---cCccc-------ccCHHHhhhcCCCCEEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT-----EH---LGLPV-------FNTVAEAKAETKANASAI  105 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~-----~i---~G~p~-------y~sl~dl~~~~~iDlaii  105 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|+++++.+ ++....+     ..   .++..       ..+++++.+  ++|+++-
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih   86 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIA--GCDFVFH   86 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHT--TCSEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHc--CCCEEEE
Confidence            35688999999999999999999999987544 3321100     00   01211       234555555  6898885


Q ss_pred             ecCh---------h--------hHHHHHHHHHHcC-CcEEEEecC
Q 020101          106 YVPP---------P--------FAAAAILEAMEAE-LDLVVCITE  132 (331)
Q Consensus       106 ~vp~---------~--------~~~~~v~~~~~~G-i~~ivi~t~  132 (331)
                      +..+         +        ....+++.|.+.+ ++.+|..++
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            4311         1        1234566777775 888776665

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=91.37  E-value=0.62  Score=42.57  Aligned_cols=89  Identities=11%  Similarity=0.033  Sum_probs=53.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC-Cce--------------e-cCcccccCHHHhhhcCCCCEEEEec
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTE--------------H-LGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~-g~~--------------i-~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      +|+|.|++|-+|+.+++.|.+.|++++...+.... .+.              + ..+.-..+++++.++.++|++|-+.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A   81 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECC
Confidence            57899999999999999999999997743221110 000              0 0111112344444433589998654


Q ss_pred             Ch------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          108 PP------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       108 p~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ..                  .....+++.|.+.|++.+|.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  124 (338)
T 1udb_A           82 GLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             SCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            21                  11234566677788887776664

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=91.35  E-value=0.54  Score=43.81  Aligned_cols=31  Identities=32%  Similarity=0.546  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      .+|+|.|++|-+|+.+++.|.+.|+++++..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~   55 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIV   55 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence            5688999999999999999999999987543

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=91.23  E-value=0.52  Score=48.23  Aligned_cols=92  Identities=13%  Similarity=0.102  Sum_probs=56.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCc---ee-----cCcccc-------cCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT---EH-----LGLPVF-------NTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~---~i-----~G~p~y-------~sl~dl~~~~~iDlai  104 (331)
                      +..+|+|.|++|-+|+.+++.|.+.|+++++... +....+   .+     .++..+       .+++++.++.++|++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vi   89 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   89 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEE
Confidence            3467899999999999999999999999874432 211000   00     112111       2344444433689998


Q ss_pred             EecChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          105 IYVPPP------------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       105 i~vp~~------------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      -+....                  ....+++.|.+.+++.+|.+++
T Consensus        90 h~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS  135 (699)
T 1z45_A           90 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  135 (699)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            764321                  1344667777788888776665

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.19  E-value=0.67  Score=42.88  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=39.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC-c----ee-cC---------cccccCHHHhhhcCCCCEEEEe
Q 020101           44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T----EH-LG---------LPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g-~----~i-~G---------~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      +|+|+|+ |.+|..+...+...  +.+++ .+|.+... +    +. ..         +....+.++ .+  +.|+++++
T Consensus         2 kI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~--~aDvViia   76 (310)
T 1guz_A            2 KITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TA--NSDIVIIT   76 (310)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GT--TCSEEEEC
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HC--CCCEEEEe
Confidence            6899999 99999988877764  67766 66654410 0    01 11         122245666 33  68999999


Q ss_pred             cCh
Q 020101          107 VPP  109 (331)
Q Consensus       107 vp~  109 (331)
                      +|.
T Consensus        77 v~~   79 (310)
T 1guz_A           77 AGL   79 (310)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            964

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.10  E-value=0.37  Score=44.29  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPK   76 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~   76 (331)
                      ..+|+|+|+ |.+|..+...|...|+  +++ .+|.+
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~-l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIA   41 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence            468999999 9999999888888887  766 66664

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.05  E-value=0.3  Score=43.60  Aligned_cols=40  Identities=23%  Similarity=0.236  Sum_probs=32.7

Q ss_pred             ccc-CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           36 AVF-VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        36 ~ll-~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      ++| .-+..+|+|||+ |++|..-++.|.+.|.+++ .|+|..
T Consensus        24 Pifl~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~Vt-Vvap~~   64 (223)
T 3dfz_A           24 TVMLDLKGRSVLVVGG-GTIATRRIKGFLQEGAAIT-VVAPTV   64 (223)
T ss_dssp             EEEECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEE-EECSSC
T ss_pred             ccEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCC
Confidence            344 556778999999 8898888899999999877 888865

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=91.03  E-value=0.69  Score=42.94  Aligned_cols=86  Identities=14%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC--Cce-----e--cCcccccCHHHhhhcCCCCEEEEecC--
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG--GTE-----H--LGLPVFNTVAEAKAETKANASAIYVP--  108 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~--g~~-----i--~G~p~y~sl~dl~~~~~iDlaii~vp--  108 (331)
                      ..||+|||+ |.+|......+...|+  +++ .+|.+..  |..     .  ..+..+.+.+++ +  +.|++|++..  
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~-L~Di~~~~~g~a~dl~~~~~~~i~~t~d~~~l-~--~aD~Vi~aag~~   88 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLV-LLDLSEGTKGATMDLEIFNLPNVEISKDLSAS-A--HSKVVIFTVNSL   88 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECCC-----CHHHHHHHTCTTEEEESCGGGG-T--TCSEEEECCCC-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEcCCcchHHHHHHHhhhcCCCeEEeCCHHHH-C--CCCEEEEcCCCC
Confidence            367999998 9999888877777676  655 6555431  111     0  123333566554 3  6899999862  


Q ss_pred             -------------hhhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 -------------PPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 -------------~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                   .+...++++++.+...+.++++.+
T Consensus        89 ~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s  125 (303)
T 2i6t_A           89 GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS  125 (303)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence                         123556777777766666544433

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.81  E-value=0.16  Score=50.56  Aligned_cols=67  Identities=18%  Similarity=0.090  Sum_probs=50.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ...+|+|+|+ |.+|+.+++.++..|.+++ .+++.....   .-.|.. +.+++++..  ..|+++++++....
T Consensus       273 ~GktV~IiG~-G~IG~~~A~~lka~Ga~Vi-v~d~~~~~~~~A~~~Ga~-~~~l~e~l~--~aDvVi~atgt~~~  342 (494)
T 3ce6_A          273 GGKKVLICGY-GDVGKGCAEAMKGQGARVS-VTEIDPINALQAMMEGFD-VVTVEEAIG--DADIVVTATGNKDI  342 (494)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCE-ECCHHHHGG--GCSEEEECSSSSCS
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCE-EecHHHHHh--CCCEEEECCCCHHH
Confidence            4567899998 9999999999999999876 777754111   124655 346778776  78999999986654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.78  E-value=0.18  Score=49.02  Aligned_cols=79  Identities=24%  Similarity=0.272  Sum_probs=53.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----ecCccccc-C------HHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----HLGLPVFN-T------VAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i~G~p~y~-s------l~dl~~~~~iDlaii~vp~  109 (331)
                      ..+|+|+|+ |++|+.+.+.|.+.|++++ .|+.+.  +.     -.|.+++. +      ++++.- .+.|++|++++.
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vv-vId~d~--~~v~~~~~~g~~vi~GDat~~~~L~~agi-~~A~~viv~~~~   78 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMV-VLDHDP--DHIETLRKFGMKVFYGDATRMDLLESAGA-AKAEVLINAIDD   78 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEE-EEECCH--HHHHHHHHTTCCCEESCTTCHHHHHHTTT-TTCSEEEECCSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCH--HHHHHHHhCCCeEEEcCCCCHHHHHhcCC-CccCEEEECCCC
Confidence            345889999 9999999999999999877 666543  22     24666552 2      333211 268999999987


Q ss_pred             hh-HHHHHHHHHHcCCc
Q 020101          110 PF-AAAAILEAMEAELD  125 (331)
Q Consensus       110 ~~-~~~~v~~~~~~Gi~  125 (331)
                      +. ...++..+-+.+.+
T Consensus        79 ~~~n~~i~~~ar~~~p~   95 (413)
T 3l9w_A           79 PQTNLQLTEMVKEHFPH   95 (413)
T ss_dssp             HHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhCCC
Confidence            54 34455556666654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=90.68  E-value=0.14  Score=46.41  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=46.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +. +|+|+|+ |.+|+.++..|.+.|. +++ .+|.+... ++   ..+...+.++++..+  +.|++|.+||..
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~-v~nR~~~ka~~la~~~~~~~~~~~~~~~~--~aDiVInatp~g  177 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIW-VVNRTIERAKALDFPVKIFSLDQLDEVVK--KAKSLFNTTSVG  177 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHHHHTTCCCEE-EEESCHHHHHTCCSSCEEEEGGGHHHHHH--TCSEEEECSSTT
T ss_pred             CC-eEEEECc-HHHHHHHHHHHHHcCCCEEE-EEeCCHHHHHHHHHHcccCCHHHHHhhhc--CCCEEEECCCCC
Confidence            45 7899999 9999999999999998 455 78876421 11   112224567777666  689999999854

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=90.66  E-value=0.55  Score=41.26  Aligned_cols=31  Identities=16%  Similarity=0.247  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      +|+|.|+++-+|+.+++.|.+.|++++ .++.
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~~V~-~~~r   33 (257)
T 1fjh_A            3 IIVISGCATGIGAATRKVLEAAGHQIV-GIDI   33 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            477899999999999999999999977 4443

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=90.58  E-value=1.1  Score=40.80  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCC----------C--cee----cCcccccCHHHhhhcCCCCEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKG----------G--TEH----LGLPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~----------g--~~i----~G~p~y~sl~dl~~~~~iDlai  104 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|+++++.+ ++...          +  ..+    ..+.-..+++++.+  ++|+++
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi   82 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK--GCTGVF   82 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT--TCSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc--CCCEEE
Confidence            35688899999999999999999999987544 34310          0  000    11222234555555  689888


Q ss_pred             EecCh--------h--h-------HHHHHHHHHHcC-CcEEEEecC
Q 020101          105 IYVPP--------P--F-------AAAAILEAMEAE-LDLVVCITE  132 (331)
Q Consensus       105 i~vp~--------~--~-------~~~~v~~~~~~G-i~~ivi~t~  132 (331)
                      -+..+        .  .       ...+++.|.+.+ ++.+|..++
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           83 HVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             ECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            54311        1  1       244667777777 888776665

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=90.55  E-value=0.54  Score=43.09  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=53.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEEeCCCCCC--c---ee--cCcccc-------cCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG--T---EH--LGLPVF-------NTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~VnP~~~g--~---~i--~G~p~y-------~sl~dl~~~~~iDlaii~  106 (331)
                      .+|+|.|++|-+|+.+++.|.+.  |+++++.......+  +   ++  .++..+       .+++++.+  .+|++|-+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~   82 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIVHY   82 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEEEC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhh--cCCEEEEC
Confidence            57889999999999999998887  88887443321100  0   01  122211       23455555  67999876


Q ss_pred             cChh------------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          107 VPPP------------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       107 vp~~------------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ....                  ....+++.|.+.|+ .+|.+++
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS  125 (348)
T 1oc2_A           83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVST  125 (348)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecc
Confidence            5321                  14456777888888 4455553

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=90.33  E-value=0.42  Score=44.09  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEe
Q 020101           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGV   73 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~V   73 (331)
                      +|+|.|++|-+|+.+++.|.+. |+++++..
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~   32 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEe
Confidence            5889999999999999998887 78887443

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=90.26  E-value=0.59  Score=43.28  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      .+|+|.|++|-+|+.+++.|.+.|++++..
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~   31 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGYEVHGI   31 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            468899999999999999999999987743

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=90.19  E-value=0.33  Score=44.97  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCc---eecCcccc------cCHHHhhhc---CCCCEEEEecC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---EHLGLPVF------NTVAEAKAE---TKANASAIYVP  108 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~---~i~G~p~y------~sl~dl~~~---~~iDlaii~vp  108 (331)
                      ..+|+|.|++|-+|+.+++.|.+.| +++++...... ..   ...++.+.      .+++++.+.   .++|++|-+..
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~  124 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-GTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA  124 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS-GGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC-cchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECCc
Confidence            3568899999999999999999999 88774433221 11   11111111      124444431   14899987653


Q ss_pred             hh----------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          109 PP----------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~~----------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ..                ....+++.|.+.|+ .+|.+++
T Consensus       125 ~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS  163 (357)
T 2x6t_A          125 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS  163 (357)
T ss_dssp             CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             ccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcc
Confidence            21                13567778888888 4455554

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=90.18  E-value=0.31  Score=43.82  Aligned_cols=87  Identities=16%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCCc---eecCcccc------cCHHHhhhc---CCCCEEEEecChh
Q 020101           44 RVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---EHLGLPVF------NTVAEAKAE---TKANASAIYVPPP  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g~---~i~G~p~y------~sl~dl~~~---~~iDlaii~vp~~  110 (331)
                      +|+|.|++|.+|+.+++.|.+.| +++++...... ..   ...++.+.      .+++++.+.   .++|++|-+....
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~   79 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-GTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSS-GGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCC-CchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcccc
Confidence            37889999999999999999999 78774433221 11   11121111      124444431   1489999765321


Q ss_pred             ----------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ----------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ----------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                                      ....+++.|.+.|+ .++.+++
T Consensus        80 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS  116 (310)
T 1eq2_A           80 STTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS  116 (310)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             cCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEee
Confidence                            14567778888888 4455554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.15  E-value=0.46  Score=43.91  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-cC------cccc-cCHHHhhhcCCCCEEEEecC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-LG------LPVF-NTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~G------~p~y-~sl~dl~~~~~iDlaii~vp  108 (331)
                      ||+|+|+ |.+|..+...+...|+  +++ .+|.+..   +.  ++ .+      .++. .+.+++ +  +.|++|++++
T Consensus         2 kI~VIGa-G~vG~~la~~la~~g~~~eV~-L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~-~--~aDvVIi~~~   76 (304)
T 2v6b_A            2 KVGVVGT-GFVGSTAAFALVLRGSCSELV-LVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSEL-A--DAQVVILTAG   76 (304)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGG-T--TCSEEEECC-
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHh-C--CCCEEEEcCC
Confidence            6899999 9999998888887787  665 6665431   00  00 11      1122 233332 2  6899999995


Q ss_pred             hhh----------------HHHHHHHHHHcCCcEEEE
Q 020101          109 PPF----------------AAAAILEAMEAELDLVVC  129 (331)
Q Consensus       109 ~~~----------------~~~~v~~~~~~Gi~~ivi  129 (331)
                      ...                ..++++++.+...+.+++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi  113 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL  113 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEE
Confidence            432                255666666666555443

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=90.10  E-value=0.4  Score=42.27  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCCCceecCcccccCHHHhhhcCCCCEEEEecChh------------
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------  110 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~------------  110 (331)
                      +|+|.|++|.+|+.+++.|.+ |+++++... +.....-...+.-..+++++.+..++|++|-+....            
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~   80 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKA   80 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCTTCEECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHH
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCCCCceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCHHHH
Confidence            578999999999999999885 888774332 211000011111122344544422489998765321            


Q ss_pred             ------hHHHHHHHHHHcCCcEEEEecC
Q 020101          111 ------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                            ....+++.|.+.|++ ++.+++
T Consensus        81 ~~~n~~~~~~l~~~~~~~~~~-iv~~SS  107 (273)
T 2ggs_A           81 YKINAEAVRHIVRAGKVIDSY-IVHIST  107 (273)
T ss_dssp             HHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             HHHhHHHHHHHHHHHHHhCCe-EEEEec
Confidence                  235566777777774 454554

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=90.08  E-value=0.62  Score=42.64  Aligned_cols=91  Identities=11%  Similarity=-0.005  Sum_probs=54.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcC-------CeEEEEeC-CCCC----Ccee----cCcccccCHHHhhhcCCCCEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYG-------TKMVGGVT-PKKG----GTEH----LGLPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g-------~~iv~~Vn-P~~~----g~~i----~G~p~y~sl~dl~~~~~iDlai  104 (331)
                      +.++|+|.|++|-+|+.+++.|.+.|       ++++.... +...    +..+    ..+.-..+++++.+ .++|++|
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vi   91 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE-ARPDVIF   91 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH-TCCSEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHh-cCCCEEE
Confidence            35678999999999999999999988       67764322 2110    0111    12222234555552 2799999


Q ss_pred             EecChh-----------------hHHHHHHHHHHcC-----CcEEEEecC
Q 020101          105 IYVPPP-----------------FAAAAILEAMEAE-----LDLVVCITE  132 (331)
Q Consensus       105 i~vp~~-----------------~~~~~v~~~~~~G-----i~~ivi~t~  132 (331)
                      -+....                 ....+++.|.+.+     ++.+|.+++
T Consensus        92 h~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS  141 (342)
T 2hrz_A           92 HLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSS  141 (342)
T ss_dssp             ECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred             ECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCc
Confidence            765421                 1234566666665     777676654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=90.04  E-value=0.76  Score=43.42  Aligned_cols=118  Identities=13%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc-----------CHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~-----------sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|+|+|+ |-.|..++++|...|..-+..+|+.....+..+...|-           .+.+-..+.++++-+.+.+.
T Consensus        35 ~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~  113 (346)
T 1y8q_A           35 RASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE  113 (346)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence            3567899999 88999999999999985444888765422222222221           12222333355655544443


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      .... ...+.. .+...|+..+.  +.+....+.+.| +++++.++--.+.|+.-
T Consensus       114 ~~~~-~~~~~~-~~~dvVv~~~d--~~~~r~~ln~~~-~~~~ip~i~~~~~G~~G  163 (346)
T 1y8q_A          114 DIEK-KPESFF-TQFDAVCLTCC--SRDVIVKVDQIC-HKNSIKFFTGDVFGYHG  163 (346)
T ss_dssp             CGGG-CCHHHH-TTCSEEEEESC--CHHHHHHHHHHH-HHTTCEEEEEEEEBTEE
T ss_pred             ccCc-chHHHh-cCCCEEEEcCC--CHHHHHHHHHHH-HHcCCCEEEEeecccEE
Confidence            2211 122222 36776554332  334444566666 77888877666666543

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=89.98  E-value=0.89  Score=41.02  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=52.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe--CCCC-C-Cce---e-----------cCcccccCHHHhhhcCCCCEEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKK-G-GTE---H-----------LGLPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V--nP~~-~-g~~---i-----------~G~p~y~sl~dl~~~~~iDlai  104 (331)
                      .+|+|.|++|-+|+.+++.|.+.|+++++.+  +|.. . ...   .           ..+.-..+++++.+  ++|++|
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   79 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIE--GCVGIF   79 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHT--TCSEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHc--CCCEEE
Confidence            3588999999999999999999999987544  4321 0 000   0           01111224555555  689988


Q ss_pred             EecCh---------h--------hHHHHHHHHHHc-CCcEEEEecC
Q 020101          105 IYVPP---------P--------FAAAAILEAMEA-ELDLVVCITE  132 (331)
Q Consensus       105 i~vp~---------~--------~~~~~v~~~~~~-Gi~~ivi~t~  132 (331)
                      -+..+         +        ....+++.|.+. +++.+|.+++
T Consensus        80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS  125 (322)
T 2p4h_X           80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSS  125 (322)
T ss_dssp             ECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence            65421         0        122345556666 7888776665

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=89.82  E-value=0.17  Score=52.63  Aligned_cols=90  Identities=17%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee--------------cC-------------cccccCHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH--------------LG-------------LPVFNTVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i--------------~G-------------~p~y~sl~dl~   95 (331)
                      .+|+|||+ |.||..+...+.+.|++++ .+|++...-+-              .|             +....++++ .
T Consensus       315 ~kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~-~  391 (715)
T 1wdk_A          315 KQAAVLGA-GIMGGGIAYQSASKGTPIL-MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-F  391 (715)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-G
T ss_pred             CEEEEECC-ChhhHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHH-H
Confidence            45889999 9999999999999999877 66765410000              12             122334533 3


Q ss_pred             hcCCCCEEEEecChhh--HHHHHHHHHHc-CCcEEEE-ecCCCChh
Q 020101           96 AETKANASAIYVPPPF--AAAAILEAMEA-ELDLVVC-ITEGIPQH  137 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~--~~~~v~~~~~~-Gi~~ivi-~t~G~~e~  137 (331)
                      .  +.|++|.++|.+.  -..++.++.+. .-+.+++ .|++++.+
T Consensus       392 ~--~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~  435 (715)
T 1wdk_A          392 G--NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS  435 (715)
T ss_dssp             G--GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred             C--CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH
Confidence            3  6899999999665  33455554332 1233332 45677654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.59  E-value=0.61  Score=43.42  Aligned_cols=82  Identities=21%  Similarity=0.158  Sum_probs=50.8

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHcCCeEEEEeCCCCCCc-----eecCccccc--CHHHhh-hcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFN--TVAEAK-AETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~g~~iv~~VnP~~~g~-----~i~G~p~y~--sl~dl~-~~~~iDlaii~vp~~~  111 (331)
                      ...+|.++|. |..|.. +++.|.+.|+++. +.|-+....     +-.|++++.  +.+++. .  ++|++|+...-..
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~-~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~--~~d~vV~Spgi~~   78 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFEVS-GCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEF--KADVYVIGNVAKR   78 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTCEEE-EEESSCCTTHHHHHHHTTCEEEESCCGGGGGSC--CCSEEEECTTCCT
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCC--CCCEEEECCCcCC
Confidence            4567889999 888875 6788889999977 655443101     124777763  344554 3  5898887531112


Q ss_pred             HHHHHHHHHHcCCcE
Q 020101          112 AAAAILEAMEAELDL  126 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~  126 (331)
                      .-+.++++.++|++.
T Consensus        79 ~~p~~~~a~~~gi~v   93 (326)
T 3eag_A           79 GMDVVEAILNLGLPY   93 (326)
T ss_dssp             TCHHHHHHHHTTCCE
T ss_pred             CCHHHHHHHHcCCcE
Confidence            223356666777664

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=89.47  E-value=0.36  Score=47.26  Aligned_cols=90  Identities=12%  Similarity=0.035  Sum_probs=57.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCC----------------------------Cce-e-cCcc-
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG----------------------------GTE-H-LGLP-   86 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~----------------------------g~~-i-~G~p-   86 (331)
                      +..+|+|.|++|-+|+.+++.|.+.   |+++++.+-....                            +-+ + ..+. 
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~  151 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE  151 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence            5678999999999999999999887   8998855422110                            000 0 1111 


Q ss_pred             -----cccCHHHhhhcCCCCEEEEecCh--------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101           87 -----VFNTVAEAKAETKANASAIYVPP--------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        87 -----~y~sl~dl~~~~~iDlaii~vp~--------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                           -..+++++.+  ++|++|-+...              .....+++.|.+.+++.++.+++
T Consensus       152 ~~~gld~~~~~~~~~--~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          152 PDLGLDQPMWRRLAE--TVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             GGGGCCHHHHHHHHH--HCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             cccCCCHHHHHHHHc--CCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence                 1123455555  68999866422              23566778888889877777765

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=89.35  E-value=0.94  Score=40.28  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMV   70 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv   70 (331)
                      ..+|+|.|+++.+|+.+++.|.+.|++++
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~   49 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGDKVA   49 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            34578899999999999999999999976

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=89.29  E-value=0.7  Score=43.64  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=63.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC--------------Cc---e---------ecC--cccc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG--------------GT---E---------HLG--LPVF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~--------------g~---~---------i~G--~p~y--~sl   91 (331)
                      +||+|-|. |++|+.+.|.+.+. ++++++.-||..+              |+   +         +.|  ++++  .+.
T Consensus         2 ~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp   80 (332)
T 3pym_A            2 VRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERDP   80 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             eEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeeccc
Confidence            68899999 99999999987775 6889977667210              10   0         223  3444  246


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      ++++- +.++|+++-++......+-+...++.|.+.+++-+
T Consensus        81 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsa  121 (332)
T 3pym_A           81 ANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITA  121 (332)
T ss_dssp             GGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESS
T ss_pred             ccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECC
Confidence            66653 24799999999988888888999999999877533

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=89.16  E-value=1.7  Score=40.32  Aligned_cols=86  Identities=15%  Similarity=0.129  Sum_probs=49.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-cCc------cccc-CHHHhhhcCCCCEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-LGL------PVFN-TVAEAKAETKANASAI  105 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~G~------p~y~-sl~dl~~~~~iDlaii  105 (331)
                      ++.||+|||+ |..|....-.+...+.  +++ .+|.+..   |.  ++ .+.      .+.. +.++ .+  +.|++|+
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~-L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a-~~--~aDvVii   80 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELV-LIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD-VK--DCDVIVV   80 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG-GT--TCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHH-hC--CCCEEEE
Confidence            3568999999 9999887777777665  555 6554431   10  00 111      1221 2222 23  7999999


Q ss_pred             ecChhh----------------HHHHHHHHHHcCCcEEEEec
Q 020101          106 YVPPPF----------------AAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       106 ~vp~~~----------------~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      +.+...                ..++++++.+...+.+++..
T Consensus        81 ~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           81 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             cCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            887543                45667777776666655543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=89.03  E-value=0.59  Score=43.06  Aligned_cols=86  Identities=10%  Similarity=-0.005  Sum_probs=52.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-----CeEEEEeCCCCCCc-eecCccc-------ccCHHHhhhcCC-CCEEEEecC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-----TKMVGGVTPKKGGT-EHLGLPV-------FNTVAEAKAETK-ANASAIYVP  108 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-----~~iv~~VnP~~~g~-~i~G~p~-------y~sl~dl~~~~~-iDlaii~vp  108 (331)
                      ++|+|.|++|-+|+.+++.|.+.|     +++++.+....... ...++..       ..+++++.+... +|+++-+..
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a~   81 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTW   81 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECCC
Confidence            468899999999999999998888     88775443221100 0012211       123455555222 899987743


Q ss_pred             -----h--------hhHHHHHHHHHHc--CCcEEE
Q 020101          109 -----P--------PFAAAAILEAMEA--ELDLVV  128 (331)
Q Consensus       109 -----~--------~~~~~~v~~~~~~--Gi~~iv  128 (331)
                           +        .....+++.|.+.  +++.++
T Consensus        82 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v  116 (364)
T 2v6g_A           82 ANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS  116 (364)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred             CCcchHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence                 1        1245566777776  788865

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=88.97  E-value=1.2  Score=40.58  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce---ecCcccc--------cCHHHhhhcCCCCEEEEecC---
Q 020101           44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---HLGLPVF--------NTVAEAKAETKANASAIYVP---  108 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~---i~G~p~y--------~sl~dl~~~~~iDlaii~vp---  108 (331)
                      +|+|.|++|-+|+.+++.|.+. |+++++.......-..   ..++..+        ..++++.+  ++|++|-+..   
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~d~vih~A~~~~   79 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAIAT   79 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCCCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhcc--CCCEEEEcccccC
Confidence            6889999999999999999987 8998744332110000   0122211        12444554  6899986532   


Q ss_pred             hh---------------hHHHHHHHHHHcCCcEEEEecC
Q 020101          109 PP---------------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~~---------------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +.               ....+++.|.+.| +.+|.+++
T Consensus        80 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS  117 (345)
T 2bll_A           80 PIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST  117 (345)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred             ccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence            11               1345667777888 66666665

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=88.96  E-value=0.19  Score=49.87  Aligned_cols=66  Identities=14%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ...+|+|+|. |++|+.+++.++.+|.+++ .+||.....   .-.|+. +.+++++..  ..|++++++....
T Consensus       256 ~GktVgIIG~-G~IG~~vA~~l~~~G~~Vi-v~d~~~~~~~~a~~~g~~-~~~l~ell~--~aDiVi~~~~t~~  324 (479)
T 1v8b_A          256 SGKIVVICGY-GDVGKGCASSMKGLGARVY-ITEIDPICAIQAVMEGFN-VVTLDEIVD--KGDFFITCTGNVD  324 (479)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSCHHHHHHHHTTTCE-ECCHHHHTT--TCSEEEECCSSSS
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCcCEEE-EEeCChhhHHHHHHcCCE-ecCHHHHHh--cCCEEEECCChhh
Confidence            3456889998 9999999999999999977 778765210   123553 357999887  7999999974433

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=88.93  E-value=0.5  Score=42.29  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=38.7

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---C--CCCEEEEEeCCCC
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---T--EKPIVAFIAGLTA  275 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~--~KPVvv~k~Grs~  275 (331)
                      .+.+.|+.+.+||++|+|++.+.+.|-......++.++++   .  .||||++-.|...
T Consensus        33 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~   91 (240)
T 3rst_A           33 TFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAA   91 (240)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCeeh
Confidence            3556677788899999999999986654555555444443   3  8999998777554

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=88.90  E-value=0.14  Score=48.92  Aligned_cols=92  Identities=12%  Similarity=0.055  Sum_probs=59.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC----------CC-------------Cc--eecC--ccccc--C
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK----------KG-------------GT--EHLG--LPVFN--T   90 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~----------~~-------------g~--~i~G--~p~y~--s   90 (331)
                      +..++|+|.|+ |++|+.+++.+.+.++++++.-||.          ++             ++  .+.|  ++++.  +
T Consensus        19 ~~~~kVaInGf-GrIGr~vlr~l~e~~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~d   97 (356)
T 3hja_A           19 PGSMKLAINGF-GRIGRNVFKIAFERGIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAERD   97 (356)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             CCCeEEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence            55789999999 9999999999888789988655553          00             00  1233  23443  3


Q ss_pred             HHHhhh-cCCCCEEEEecChhhH----HHHHHHHHH-cCCcEEEEecC
Q 020101           91 VAEAKA-ETKANASAIYVPPPFA----AAAILEAME-AELDLVVCITE  132 (331)
Q Consensus        91 l~dl~~-~~~iDlaii~vp~~~~----~~~v~~~~~-~Gi~~ivi~t~  132 (331)
                      .++++- +.++|+++.++.....    .+-+...++ .|.+.++|-.+
T Consensus        98 p~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsap  145 (356)
T 3hja_A           98 PKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVP  145 (356)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSC
T ss_pred             hhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCC
Confidence            554432 2378999988876655    556666777 88887665444

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=88.81  E-value=1.1  Score=40.74  Aligned_cols=89  Identities=10%  Similarity=0.022  Sum_probs=52.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCCCC--cee------cCcccc-------cCHHHhhhcCCCCEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG--TEH------LGLPVF-------NTVAEAKAETKANASA  104 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~~g--~~i------~G~p~y-------~sl~dl~~~~~iDlai  104 (331)
                      .++|+|.|++|-+|+.+++.|.+.|  +++++.......+  +..      .++..+       .+++++..  ++|++|
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   80 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVR--KVDGVV   80 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH--TCSEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhh--CCCEEE
Confidence            3568999999999999999998875  8877443211000  110      011111       23445554  789998


Q ss_pred             EecChh------------------hHHHHHHHHHHcCC-cEEEEecC
Q 020101          105 IYVPPP------------------FAAAAILEAMEAEL-DLVVCITE  132 (331)
Q Consensus       105 i~vp~~------------------~~~~~v~~~~~~Gi-~~ivi~t~  132 (331)
                      -+....                  ....+++.|.+.+. +.+|.+++
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  127 (336)
T 2hun_A           81 HLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVST  127 (336)
T ss_dssp             ECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence            765321                  13456677777765 56665554

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=88.65  E-value=0.83  Score=41.93  Aligned_cols=33  Identities=18%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      +..+|+|.|++|-+|+.+++.|.+.|+++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~   58 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVD   58 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEe
Confidence            456799999999999999999999999987443

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=88.58  E-value=0.68  Score=40.21  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      +|+|.|++|-+|+.+++.|.+.|++++.
T Consensus         3 ~vlVtGasg~iG~~l~~~L~~~g~~V~~   30 (255)
T 2dkn_A            3 VIAITGSASGIGAALKELLARAGHTVIG   30 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHhCCCEEEE
Confidence            5788999999999999999999999773

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=88.55  E-value=1.1  Score=41.93  Aligned_cols=88  Identities=10%  Similarity=0.008  Sum_probs=54.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-------eEEEEeCCC----CC---C------c----eecCcccccCHHHhhh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPK----KG---G------T----EHLGLPVFNTVAEAKA   96 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-------~iv~~VnP~----~~---g------~----~i~G~p~y~sl~dl~~   96 (331)
                      ++.||+|+|++|..|+.+...|...+.       +++ .+|..    ..   |      +    ....+....++.+..+
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~-l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQ-LLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEE-EEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence            457899999999999988887776664       555 67655    10   0      0    0111222345666555


Q ss_pred             cCCCCEEEEecCh----------------hhHHHHHHHHHHcC-CcE-EEEec
Q 020101           97 ETKANASAIYVPP----------------PFAAAAILEAMEAE-LDL-VVCIT  131 (331)
Q Consensus        97 ~~~iDlaii~vp~----------------~~~~~~v~~~~~~G-i~~-ivi~t  131 (331)
                        +.|+++++...                ....++++.+.+.+ .+. ++++|
T Consensus        83 --~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           83 --DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             --TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             --CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence              78999977531                12456778888884 774 34444

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=88.44  E-value=1.8  Score=38.49  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=29.4

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      .++.-+..+|+|.|+++.+|+.+.+.|.+.|++++ .++
T Consensus        28 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~-~~~   65 (279)
T 3ctm_A           28 DLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVA-IWY   65 (279)
T ss_dssp             GGGCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEE-EEE
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence            33333456688899999999999999999999977 444

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=88.41  E-value=1.1  Score=41.80  Aligned_cols=33  Identities=15%  Similarity=0.058  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG   72 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~   72 (331)
                      .+..+|+|.|++|-+|+.+++.|.+.|+++++.
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~   41 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIV   41 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            456789999999999999999999999998743

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=88.29  E-value=2  Score=37.86  Aligned_cols=34  Identities=9%  Similarity=0.100  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      +..+|+|.|+++.+|+.+++.|.+.|++++ .++.
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~-~~~r   51 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGAEVT-ICAR   51 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence            345678899999999999999999999976 4443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=88.10  E-value=0.56  Score=44.12  Aligned_cols=91  Identities=13%  Similarity=0.130  Sum_probs=52.4

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCC---Cc--ee-c------CcccccCHHHhhhcCCCC
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKG---GT--EH-L------GLPVFNTVAEAKAETKAN  101 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~---g~--~i-~------G~p~y~sl~dl~~~~~iD  101 (331)
                      ++|+.+..||+|+|+ |.+|+.++..+...+.  +++ .+|....   |.  ++ .      ...++.+..+...  +.|
T Consensus         3 ~~~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~-l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~--~aD   78 (326)
T 3vku_A            3 SITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIG-IVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAK--DAD   78 (326)
T ss_dssp             ----CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT--TCS
T ss_pred             ccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhc--CCC
Confidence            567667789999998 9999999888877765  555 7776431   00  01 1      2223333223333  689


Q ss_pred             EEEEecChhh----------------HHHHHHHHHHcCCcEEEEe
Q 020101          102 ASAIYVPPPF----------------AAAAILEAMEAELDLVVCI  130 (331)
Q Consensus       102 laii~vp~~~----------------~~~~v~~~~~~Gi~~ivi~  130 (331)
                      ++|++.....                ..++++.+.+...+.+++.
T Consensus        79 iVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilv  123 (326)
T 3vku_A           79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV  123 (326)
T ss_dssp             EEEECCCCC----------------CHHHHHHHHHTTTCCSEEEE
T ss_pred             EEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            9998864221                3455666666666654443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=87.94  E-value=0.4  Score=49.93  Aligned_cols=91  Identities=12%  Similarity=-0.037  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-e-------------cC-------------cccccCHHHhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H-------------LG-------------LPVFNTVAEAK   95 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-i-------------~G-------------~p~y~sl~dl~   95 (331)
                      .+|+|||+ |.||..+...+.+.|++++ .+|.+...-+ .             .|             +....++++ .
T Consensus       313 ~kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~-~  389 (725)
T 2wtb_A          313 KKVAIIGG-GLMGSGIATALILSNYPVI-LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYES-F  389 (725)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGG-G
T ss_pred             cEEEEEcC-CHhhHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHH-H
Confidence            46899999 9999999999999999876 6665431000 0             11             122334543 3


Q ss_pred             hcCCCCEEEEecChhhH--HHHHHHHHHc-CCcEEE-EecCCCChhH
Q 020101           96 AETKANASAIYVPPPFA--AAAILEAMEA-ELDLVV-CITEGIPQHD  138 (331)
Q Consensus        96 ~~~~iDlaii~vp~~~~--~~~v~~~~~~-Gi~~iv-i~t~G~~e~~  138 (331)
                      .  +.|++|.++|.+..  ..++.+..+. .-+.++ .-|++++.++
T Consensus       390 ~--~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~  434 (725)
T 2wtb_A          390 R--DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNK  434 (725)
T ss_dssp             T--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred             C--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH
Confidence            3  68999999998763  3444444332 222333 2356776543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=87.76  E-value=0.7  Score=45.04  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--Cc-----eecCccccc--CHHHhhhcCC-CCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GT-----EHLGLPVFN--TVAEAKAETK-ANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--g~-----~i~G~p~y~--sl~dl~~~~~-iDlaii~vp~~  110 (331)
                      +..+|.|+|. |..|...++.|.+.|+++. +.|.+..  ..     +-.|++++.  .-+++.+  + +|++|+...-.
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~G~~V~-~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~--~~~d~vv~spgi~   83 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKLGAIVT-VNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLD--EDFCYMIKNPGIP   83 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHTTCEEE-EEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGG--SCEEEEEECTTSC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEeCCcccCChHHHHHHhCCCEEEECCChHHhhc--CCCCEEEECCcCC
Confidence            3567889999 9999988999999999977 6555321  00     124777663  2233433  4 79888763222


Q ss_pred             hHHHHHHHHHHcCCcE
Q 020101          111 FAAAAILEAMEAELDL  126 (331)
Q Consensus       111 ~~~~~v~~~~~~Gi~~  126 (331)
                      ..-+.+.++.++|++.
T Consensus        84 ~~~p~~~~a~~~gi~v   99 (451)
T 3lk7_A           84 YNNPMVKKALEKQIPV   99 (451)
T ss_dssp             TTSHHHHHHHHTTCCE
T ss_pred             CCChhHHHHHHCCCcE
Confidence            2223467777777664

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.50  E-value=0.6  Score=40.84  Aligned_cols=83  Identities=11%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee----cCccccc----CHHHhhhc--CCCCEEEEecChhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----LGLPVFN----TVAEAKAE--TKANASAIYVPPPF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i----~G~p~y~----sl~dl~~~--~~iDlaii~vp~~~  111 (331)
                      ..+|+|+|+ |+.|+.+++.|.+.|+ ++ .++.+.  +..    .|+.++.    +.+.+.+.  .+.|++++++|.+.
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~-vid~~~--~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FV-LAEDEN--VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS   83 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EE-EESCGG--GHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EE-EEECCH--HHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence            346889999 9999999999988888 66 777654  211    3444332    22222111  26899999998764


Q ss_pred             H-HHHHHHHHHcCCc-EEEE
Q 020101          112 A-AAAILEAMEAELD-LVVC  129 (331)
Q Consensus       112 ~-~~~v~~~~~~Gi~-~ivi  129 (331)
                      . ..++..+-+.+.+ .++.
T Consensus        84 ~n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           84 ETIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             HHHHHHHHHHHHCSSSEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEE
Confidence            3 4445666667776 5443

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=87.48  E-value=0.58  Score=41.39  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=41.7

Q ss_pred             HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101          224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~  275 (331)
                      .+.|+++.+|+..+.|.+|+.+.|-....+....++++ .+|||+++..|...
T Consensus        63 ~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~~~pV~t~v~G~Aa  115 (218)
T 1y7o_A           63 IAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAA  115 (218)
T ss_dssp             HHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEccEeH
Confidence            34566778899999999999987655777888888777 77999999977644

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=87.43  E-value=0.63  Score=44.09  Aligned_cols=82  Identities=15%  Similarity=0.012  Sum_probs=50.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceec--------------CcccccCHHHhhhcCCCCEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHL--------------GLPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~--------------G~p~y~sl~dl~~~~~iDla  103 (331)
                      .+..||+|+|++|..|..++..+...|.  +++ .+|...  +...              .+....+..+..+  +.|++
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evv-LiDi~~--~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~--dADvV   80 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLC-LYDPFA--VGLEGVAEEIRHCGFEGLNLTFTSDIKEALT--DAKYI   80 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEE-EECSCH--HHHHHHHHHHHHHCCTTCCCEEESCHHHHHT--TEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEE-EEeCCc--hhHHHHHHhhhhCcCCCCceEEcCCHHHHhC--CCCEE
Confidence            3457899999989999988877777774  565 777653  1111              1111235655454  68999


Q ss_pred             EEecCh----------------hhHHHHHHHHHHcCCcE
Q 020101          104 AIYVPP----------------PFAAAAILEAMEAELDL  126 (331)
Q Consensus       104 ii~vp~----------------~~~~~~v~~~~~~Gi~~  126 (331)
                      |++...                ....++++.+.+.+.+.
T Consensus        81 vitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a  119 (343)
T 3fi9_A           81 VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDC  119 (343)
T ss_dssp             EECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            987521                22344556666666665

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=87.35  E-value=0.55  Score=43.85  Aligned_cols=80  Identities=13%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCc-e----e----cCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT-E----H----LGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~-~----i----~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ++..+++|||+ |.+|+.+++.+.+ .+.+.+...|+..... +    .    ..+. +.+++++.   +.|+++.+||.
T Consensus       123 ~~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v---~aDvVi~aTp~  197 (322)
T 1omo_A          123 KNSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS---RCDVLVTTTPS  197 (322)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT---SSSEEEECCCC
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh---CCCEEEEeeCC
Confidence            45678999999 9999999998877 4666566888764211 1    1    1234 77888876   38999999997


Q ss_pred             hhHHHHH-HHHHHcCCcE
Q 020101          110 PFAAAAI-LEAMEAELDL  126 (331)
Q Consensus       110 ~~~~~~v-~~~~~~Gi~~  126 (331)
                      ..  .++ .++++.|.+.
T Consensus       198 ~~--pv~~~~~l~~G~~V  213 (322)
T 1omo_A          198 RK--PVVKAEWVEEGTHI  213 (322)
T ss_dssp             SS--CCBCGGGCCTTCEE
T ss_pred             CC--ceecHHHcCCCeEE
Confidence            53  223 3455666554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=87.01  E-value=0.27  Score=45.18  Aligned_cols=69  Identities=6%  Similarity=0.057  Sum_probs=43.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCC-ce-ecCcc--cccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGG-TE-HLGLP--VFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g-~~-i~G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +..+++|+|+ |.+|+.++..|.+.|+ +++ .+|.+... ++ ...+.  .+.++++...  +.|++|-+||.....
T Consensus       116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~-v~~R~~~~a~~la~~~~~~~~~~~~~~~~--~aDiVInaTp~Gm~~  189 (277)
T 3don_A          116 EDAYILILGA-GGASKGIANELYKIVRPTLT-VANRTMSRFNNWSLNINKINLSHAESHLD--EFDIIINTTPAGMNG  189 (277)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHTTCCSCCE-EECSCGGGGTTCCSCCEEECHHHHHHTGG--GCSEEEECCC-----
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHhcccccHhhHHHHhc--CCCEEEECccCCCCC
Confidence            4556889999 8899999999999998 555 78876521 11 11222  2344555444  689999999976543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=86.99  E-value=2  Score=37.41  Aligned_cols=82  Identities=15%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCC-C-EEEEecChhhHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKA-N-ASAIYVPPPFAAAAILE  118 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~i-D-laii~vp~~~~~~~v~~  118 (331)
                      +..+|+|.|+++.+|+.+++.|.+.|++++ .++.+.  +...     ...+++..  ++ . +..+.+.++.+.+.+++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~-~~~r~~--~~~~-----~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~   79 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLI-LIDREA--AALD-----RAAQELGA--AVAARIVADVTDAEAMTAAAAE   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCH--HHHH-----HHHHHHGG--GEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCCH--HHHH-----HHHHHhcc--cceeEEEEecCCHHHHHHHHHH
Confidence            345688899999999999999999999977 554432  1100     00112211  11 1 11234455666666665


Q ss_pred             HHHc-CCcEEEEecCC
Q 020101          119 AMEA-ELDLVVCITEG  133 (331)
Q Consensus       119 ~~~~-Gi~~ivi~t~G  133 (331)
                      +.+. ++..+|. ..|
T Consensus        80 ~~~~~~id~li~-~Ag   94 (254)
T 2wsb_A           80 AEAVAPVSILVN-SAG   94 (254)
T ss_dssp             HHHHSCCCEEEE-CCC
T ss_pred             HHhhCCCcEEEE-CCc
Confidence            5543 5777554 444

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=86.78  E-value=1.5  Score=39.19  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      +...|+|.|+++.+|+.+++.|.+.|++++ .++.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~-~~~r   64 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVV-GCAR   64 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence            345678899999999999999999999977 4443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=86.72  E-value=0.5  Score=47.04  Aligned_cols=65  Identities=14%  Similarity=0.016  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ...+|+|+|. |++|+.+++.++.+|.+++ .+||.....   ...|.. +.+++++..  ..|++++++...
T Consensus       276 ~GktVgIIG~-G~IG~~vA~~l~~~G~~V~-v~d~~~~~~~~a~~~G~~-~~~l~ell~--~aDiVi~~~~t~  343 (494)
T 3d64_A          276 AGKIAVVAGY-GDVGKGCAQSLRGLGATVW-VTEIDPICALQAAMEGYR-VVTMEYAAD--KADIFVTATGNY  343 (494)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSCHHHHHHHHTTTCE-ECCHHHHTT--TCSEEEECSSSS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCChHhHHHHHHcCCE-eCCHHHHHh--cCCEEEECCCcc
Confidence            3456889998 9999999999999999977 777764200   113554 347999887  799999998543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=86.70  E-value=2.4  Score=41.81  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             cCCCCeEEEEEcCCCCCCcH-HHHHHHHcCCeEEEEeCCCCCCc----eecCccccc--CHHHhhhcCCCCEEEEec--C
Q 020101           38 FVDKNTRVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFN--TVAEAKAETKANASAIYV--P  108 (331)
Q Consensus        38 l~~k~~~VaIvGasgk~G~~-~~~~l~~~g~~iv~~VnP~~~g~----~i~G~p~y~--sl~dl~~~~~iDlaii~v--p  108 (331)
                      +..+..+|.|+|. |..|.. +++.|.+.|+++. +.|.+....    +-.|++++.  +.+.+ .  ++|++|+..  |
T Consensus        18 ~~~~~~~v~viGi-G~sG~s~~A~~l~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~g~~~~~~-~--~~d~vV~Spgi~   92 (494)
T 4hv4_A           18 EMRRVRHIHFVGI-GGAGMGGIAEVLANEGYQIS-GSDLAPNSVTQHLTALGAQIYFHHRPENV-L--DASVVVVSTAIS   92 (494)
T ss_dssp             ----CCEEEEETT-TSTTHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHHTTCEEESSCCGGGG-T--TCSEEEECTTSC
T ss_pred             hhccCCEEEEEEE-cHhhHHHHHHHHHhCCCeEE-EEECCCCHHHHHHHHCCCEEECCCCHHHc-C--CCCEEEECCCCC
Confidence            3345578999999 889985 6899999999987 777554200    124777664  23333 2  589988763  3


Q ss_pred             hhhHHHHHHHHHHcCCc
Q 020101          109 PPFAAAAILEAMEAELD  125 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~  125 (331)
                      ++ . +.+.++.++|++
T Consensus        93 ~~-~-p~~~~a~~~gi~  107 (494)
T 4hv4_A           93 AD-N-PEIVAAREARIP  107 (494)
T ss_dssp             TT-C-HHHHHHHHTTCC
T ss_pred             CC-C-HHHHHHHHCCCC
Confidence            32 2 335556666655

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=86.39  E-value=1.3  Score=41.88  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus       117 ~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            3567899999 88999999999998875344777754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.20  E-value=2.3  Score=37.58  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=53.8

Q ss_pred             cccccCCCCeEEEEEcCCC-CCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE---EEecCh
Q 020101           34 APAVFVDKNTRVICQGITG-KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS---AIYVPP  109 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasg-k~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla---ii~vp~  109 (331)
                      +...+.-+...|+|.|++| .+|+.+++.|.+.|++++ .++.+.  +..     -...+++.+....++.   .+.+.+
T Consensus        14 ~~~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~-~~~r~~--~~~-----~~~~~~l~~~~~~~~~~~~~Dl~~~   85 (266)
T 3o38_A           14 IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVV-ISDYHE--RRL-----GETRDQLADLGLGRVEAVVCDVTST   85 (266)
T ss_dssp             CCCCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEE-EEESCH--HHH-----HHHHHHHHTTCSSCEEEEECCTTCH
T ss_pred             cccccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEE-EecCCH--HHH-----HHHHHHHHhcCCCceEEEEeCCCCH
Confidence            3334333456688899987 599999999999999977 554432  110     0112222211112222   244566


Q ss_pred             hhHHHHHHHHHHc--CCcEEEEecCCC
Q 020101          110 PFAAAAILEAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       110 ~~~~~~v~~~~~~--Gi~~ivi~t~G~  134 (331)
                      +.+.++++++.+.  ++..+|+ ..|+
T Consensus        86 ~~v~~~~~~~~~~~g~id~li~-~Ag~  111 (266)
T 3o38_A           86 EAVDALITQTVEKAGRLDVLVN-NAGL  111 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEE-CCCc
Confidence            7777777777665  5887554 5554

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=86.09  E-value=0.78  Score=40.17  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             EEecCCCCCCCCC---HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101          210 CVGIGGDPFNGTN---FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       210 ~vs~Gn~~~~~v~---~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~  275 (331)
                      +|-+++.. .+.+   +.+.|.++..|+..+.|.+|+.+.|-....+.+..++++ .+|||+++..|...
T Consensus        29 ii~l~G~I-~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g~Aa   97 (208)
T 2cby_A           29 IIFLGSEV-NDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAA   97 (208)
T ss_dssp             EEEECSCB-CHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEEE
T ss_pred             EEEEcCEE-CHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEECcEeH
Confidence            46667664 1223   344455668889999999999998766788888888887 77999999877544

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=85.99  E-value=0.51  Score=45.06  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      ..+|+|.|++|-+|+.+++.|.+.|+++++.+
T Consensus        69 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~  100 (427)
T 4f6c_A           69 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFI  100 (427)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHTTTEEEEEEEE
T ss_pred             CCEEEEecCCcHHHHHHHHHHHcCCCEEEEEE
Confidence            45789999999999999999988888887543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=85.88  E-value=0.68  Score=45.37  Aligned_cols=98  Identities=14%  Similarity=0.075  Sum_probs=60.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      ...+|+|+|. |++|+.+++.++..|.+++ .+||.....   ...|.. +.+++++..  ..|+++.++........ +
T Consensus       210 ~GktVgIiG~-G~IG~~vA~~Lka~Ga~Vi-v~D~~p~~a~~A~~~G~~-~~sL~eal~--~ADVVilt~gt~~iI~~-e  283 (436)
T 3h9u_A          210 AGKTACVCGY-GDVGKGCAAALRGFGARVV-VTEVDPINALQAAMEGYQ-VLLVEDVVE--EAHIFVTTTGNDDIITS-E  283 (436)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCE-ECCHHHHTT--TCSEEEECSSCSCSBCT-T
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCChhhhHHHHHhCCe-ecCHHHHHh--hCCEEEECCCCcCccCH-H
Confidence            3567899999 9999999999999999976 677653101   124543 448999987  79999987654333220 1


Q ss_pred             HHHHcCCcEEEE-ecCCCChhHHHHHHH
Q 020101          118 EAMEAELDLVVC-ITEGIPQHDMVRVKA  144 (331)
Q Consensus       118 ~~~~~Gi~~ivi-~t~G~~e~~~~~l~~  144 (331)
                      ......-..+++ .+.|-.|-+...|.+
T Consensus       284 ~l~~MK~gAIVINvgRg~vEID~~~L~~  311 (436)
T 3h9u_A          284 HFPRMRDDAIVCNIGHFDTEIQVAWLKA  311 (436)
T ss_dssp             TGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred             HHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence            122223334333 333433445555554

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=85.82  E-value=1.1  Score=41.59  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      +..||+|||+ |.+|..++..+...+.  +++ .+|.+.
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~-l~Di~~   41 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDANE   41 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEeCCc
Confidence            4568999999 9999988877766554  555 766653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=85.80  E-value=0.62  Score=42.80  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .-+..+|+|||+ |+.|..-++.|.+.|.+++ .|+|..
T Consensus        10 ~l~~k~VLVVGg-G~va~rka~~Ll~~Ga~Vt-Viap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLT-LVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEE-EEEEEE
T ss_pred             EcCCCEEEEECC-cHHHHHHHHHHHhCCCEEE-EEcCCC
Confidence            456788999999 8888888899999999876 777754

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=85.66  E-value=2  Score=37.71  Aligned_cols=29  Identities=17%  Similarity=0.179  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMV   70 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv   70 (331)
                      ..+|+|.|+++.+|+.+.+.|.+.|++++
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~   43 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGHKVA   43 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            34578889999999999999999999976

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=85.55  E-value=1.8  Score=38.14  Aligned_cols=72  Identities=10%  Similarity=0.054  Sum_probs=46.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      .+|+|.|+++.+|+.+++.|.+.|++++ .++.+..  ....           ....+|    .+..+.+.+.++++.+.
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~~V~-~~~r~~~--~~~~-----------~~~~~d----~~d~~~v~~~~~~~~~~   84 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSWNTI-SIDFREN--PNAD-----------HSFTIK----DSGEEEIKSVIEKINSK   84 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSCC--TTSS-----------EEEECS----CSSHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeCCcc--cccc-----------cceEEE----eCCHHHHHHHHHHHHHH
Confidence            4578899999999999999999999976 5444331  1000           001234    55667777777777664


Q ss_pred             --CCcEEEEecCC
Q 020101          123 --ELDLVVCITEG  133 (331)
Q Consensus       123 --Gi~~ivi~t~G  133 (331)
                        ++..+| ...|
T Consensus        85 ~g~iD~li-~~Ag   96 (251)
T 3orf_A           85 SIKVDTFV-CAAG   96 (251)
T ss_dssp             TCCEEEEE-ECCC
T ss_pred             cCCCCEEE-ECCc
Confidence              366644 4555

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=85.52  E-value=2  Score=37.06  Aligned_cols=78  Identities=19%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcC-CCCE-EEEecChhhHHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAET-KANA-SAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~-~iDl-aii~vp~~~~~~~v~~~~  120 (331)
                      .+|+|.|+++.+|+.+.+.|.+.|++++ .++.+.  +.         ++++.++. ++.. ..+.+..+.+.+.++++.
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~~V~-~~~r~~--~~---------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   73 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGYRVG-LMARDE--KR---------LQALAAELEGALPLPGDVREEGDWARAVAAME   73 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEE-EEESCH--HH---------HHHHHHHSTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEECCH--HH---------HHHHHHHhhhceEEEecCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999977 444332  11         12221110 1222 224455566666666665


Q ss_pred             Hc--CCcEEEEecCC
Q 020101          121 EA--ELDLVVCITEG  133 (331)
Q Consensus       121 ~~--Gi~~ivi~t~G  133 (331)
                      +.  ++..++. ..|
T Consensus        74 ~~~~~id~li~-~Ag   87 (234)
T 2ehd_A           74 EAFGELSALVN-NAG   87 (234)
T ss_dssp             HHHSCCCEEEE-CCC
T ss_pred             HHcCCCCEEEE-CCC
Confidence            43  5777554 444

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=85.48  E-value=1.2  Score=44.09  Aligned_cols=109  Identities=6%  Similarity=-0.013  Sum_probs=65.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCCc-ee-----------cCccccc---------CHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGT-EH-----------LGLPVFN---------TVA   92 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g~-~i-----------~G~p~y~---------sl~   92 (331)
                      +..+|+|.|. |+.|+..++.|.+.|.++++.       +||+..-. ++           ..+.-|.         +-+
T Consensus       251 ~g~~vaVqG~-GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~  329 (470)
T 2bma_A          251 EKQTAVVSGS-GNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNE  329 (470)
T ss_dssp             GGCEEEEECS-SHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSSC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecCc
Confidence            4577899998 999999999999999998854       45654200 11           0112121         112


Q ss_pred             HhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101           93 EAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus        93 dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ++. +.++|+++=|. +.....+.++.+++.+++.|+=.+-+....+..++   . +++|+.++
T Consensus       330 ~~~-~~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~~---L-~~rGIl~~  388 (470)
T 2bma_A          330 KPW-GVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINL---F-KSNNIIYC  388 (470)
T ss_dssp             CTT-SSCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHHHH---H-HHTTCEEE
T ss_pred             Cee-ecCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHHHH---H-HHCCcEEE
Confidence            333 24789999655 44556777888888899975533333322222222   2 46676554

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=85.47  E-value=0.36  Score=46.17  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=52.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee------cCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i------~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +..+|+|+|+ |++|+..++.+.+.|.+++ ..|+..  +.+      .|... -+.+++.. .+.|+++.+......-.
T Consensus       172 ~GktV~V~G~-G~VG~~~A~~L~~~GakVv-v~D~~~--~~l~~~a~~~ga~~-v~~~~ll~-~~~DIvip~a~~~~I~~  245 (364)
T 1leh_A          172 EGLAVSVQGL-GNVAKALCKKLNTEGAKLV-VTDVNK--AAVSAAVAEEGADA-VAPNAIYG-VTCDIFAPCALGAVLND  245 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHHHCCEE-CCGGGTTT-CCCSEEEECSCSCCBST
T ss_pred             CcCEEEEECc-hHHHHHHHHHHHHCCCEEE-EEcCCH--HHHHHHHHHcCCEE-EChHHHhc-cCCcEeeccchHHHhCH
Confidence            4567889999 9999999999999999987 778764  221      13322 24455543 36899987754332211


Q ss_pred             HHHHHHHcCCcEEEEec
Q 020101          115 AILEAMEAELDLVVCIT  131 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t  131 (331)
                        +.+-..|.+.|+..+
T Consensus       246 --~~~~~lg~~iV~e~A  260 (364)
T 1leh_A          246 --FTIPQLKAKVIAGSA  260 (364)
T ss_dssp             --THHHHCCCSEECCSC
T ss_pred             --HHHHhCCCcEEEeCC
Confidence              123334777644333

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=85.17  E-value=1  Score=42.65  Aligned_cols=89  Identities=15%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC------------------CCce----------ecC--cccc--
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK------------------GGTE----------HLG--LPVF--   88 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~------------------~g~~----------i~G--~p~y--   88 (331)
                      .+||+|-|. |++|+.++|.+.+. .+++++.-||..                  .|.+          +.|  ++++  
T Consensus         3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e   81 (337)
T 3v1y_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence            478999999 99999999987775 578887666721                  1101          112  2343  


Q ss_pred             cCHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 020101           89 NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus        89 ~sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      .+.++++- +.++|+++-++......+-+...++.|.+.+++-.
T Consensus        82 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsa  125 (337)
T 3v1y_O           82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISA  125 (337)
T ss_dssp             SSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESS
T ss_pred             cCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECC
Confidence            24555432 23789999999888888888888999998866533

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.08  E-value=0.42  Score=45.62  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |.+|+..++.+...|.+++ .+|++.
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~-~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVT-VLDINI  201 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCCH
Confidence            3467899999 9999999999999999866 677654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=85.05  E-value=0.77  Score=40.98  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhH
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFA  112 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~  112 (331)
                      ..+++..+...|+|.|+++-+|+.+++.|.+.|++++ .++.+.  +.....             .+. +..+.+-++.+
T Consensus        20 ~~~m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r~~--~~~~~~-------------~~~~~~~Dv~d~~~v   83 (260)
T 3un1_A           20 FQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVV-ATSRSI--KPSADP-------------DIHTVAGDISKPETA   83 (260)
T ss_dssp             CHHHHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEESSC--CCCSST-------------TEEEEESCTTSHHHH
T ss_pred             hhhhhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCCh--hhcccC-------------ceEEEEccCCCHHHH
Confidence            4445544556678889999999999999999999977 444332  111000             111 12234566777


Q ss_pred             HHHHHHHHHc--CCcEEEEecCCC
Q 020101          113 AAAILEAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       113 ~~~v~~~~~~--Gi~~ivi~t~G~  134 (331)
                      .+.++++.+.  ++..+++ ..|.
T Consensus        84 ~~~~~~~~~~~g~iD~lv~-nAg~  106 (260)
T 3un1_A           84 DRIVREGIERFGRIDSLVN-NAGV  106 (260)
T ss_dssp             HHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred             HHHHHHHHHHCCCCCEEEE-CCCC
Confidence            7777776665  6887664 4443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.93  E-value=0.7  Score=45.39  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=47.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcc------cccC-HHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLP------VFNT-VAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p------~y~s-l~dl~~~~~iDlaii~vp~  109 (331)
                      ..++|+|+|+ |+.|+.+++.|.+.|++++ .||.+... +   +..+++      +.++ |+++-- .+.|++|.+|+.
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~-vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi-~~ad~~ia~t~~   78 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENNDIT-IVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGA-QDADMLVAVTNT   78 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTEEEE-EEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTT-TTCSEEEECCSC
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCC-CcCCEEEEEcCC
Confidence            3578999999 9999999999988898877 77765410 0   112333      3322 444432 368999988887


Q ss_pred             hhH
Q 020101          110 PFA  112 (331)
Q Consensus       110 ~~~  112 (331)
                      +.+
T Consensus        79 De~   81 (461)
T 4g65_A           79 DET   81 (461)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            654

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=84.85  E-value=0.97  Score=39.00  Aligned_cols=53  Identities=13%  Similarity=0.100  Sum_probs=42.1

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCC
Q 020101          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTA  275 (331)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvv~k~Grs~  275 (331)
                      +.+-|.++..|+..+.|.||+.+.|-....+.+..++++ .++||+++..|...
T Consensus        43 i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g~Aa   96 (193)
T 1yg6_A           43 IVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAA   96 (193)
T ss_dssp             HHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEeeeHH
Confidence            344555777777889999999997766788888888887 67999999977654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=84.83  E-value=2  Score=42.27  Aligned_cols=128  Identities=13%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCCc-ee--------------------cCcccccCH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGT-EH--------------------LGLPVFNTV   91 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g~-~i--------------------~G~p~y~sl   91 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.       +||+..-. ++                    .|...+ +-
T Consensus       233 l~Gk~vaVQG~-GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~~  310 (450)
T 4fcc_A          233 FEGMRVSVSGS-GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-EG  310 (450)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-ET
T ss_pred             cCCCEEEEeCC-ChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-cC
Confidence            45678999998 999999999999999998854       55653200 00                    011111 11


Q ss_pred             HHhhhcCCCCEEEEe-cChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccCCCccc
Q 020101           92 AEAKAETKANASAIY-VPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKI  170 (331)
Q Consensus        92 ~dl~~~~~iDlaii~-vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~  170 (331)
                      +++.. .++|+++=| +......+.++.+.+.|++.|+-.+-+....+..++   . +++||.++ |.            
T Consensus       311 ~~i~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~i---L-~~rGIl~~-PD------------  372 (450)
T 4fcc_A          311 QQPWS-VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATEL---F-QQAGVLFA-PG------------  372 (450)
T ss_dssp             CCGGG-SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH---H-HHTTCEEE-CH------------
T ss_pred             ccccc-CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHH---H-HHCCCEEE-Ch------------
Confidence            22222 368999965 455666788888989999986644444433333332   2 46676554 44            


Q ss_pred             ccCCCCCCCCCCEEEEecChHHHHHHHHHHH
Q 020101          171 GIMPGYIHKPGRIGIVSRSGTLTYEAVFQTT  201 (331)
Q Consensus       171 ~~~~~~~~~~G~valisQSG~~~~~~~~~~~  201 (331)
                                    ++.-+|++...-+.|.+
T Consensus       373 --------------~~aNAGGVi~S~~E~~q  389 (450)
T 4fcc_A          373 --------------KAANAGGVATSGLEMAQ  389 (450)
T ss_dssp             --------------HHHTTHHHHHHHHHHHH
T ss_pred             --------------HHhcCccHhhhHHHHhh
Confidence                          23457888877778765

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=84.82  E-value=1.8  Score=39.94  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=50.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCc-----ee-c-------Cccc--ccCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGT-----EH-L-------GLPV--FNTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~-----~i-~-------G~p~--y~sl~dl~~~~~iDlaii~  106 (331)
                      .||+|||+ |.+|..+...+...|. + +..+|.+...-     ++ .       ...+  ..+.+++ +  +.|++|++
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~-~--~aD~Vi~a   77 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADT-A--NSDVIVVT   77 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGG-T--TCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHH-C--CCCEEEEc
Confidence            47899999 9999998888877775 7 44777654100     00 0       1111  2455443 3  68999999


Q ss_pred             cChh----------------hHHHHHHHHHHcCCcEEEEec
Q 020101          107 VPPP----------------FAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       107 vp~~----------------~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      .+..                ...++.+++.+.+.+.+++..
T Consensus        78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~  118 (309)
T 1ur5_A           78 SGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV  118 (309)
T ss_dssp             CCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEEC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEc
Confidence            7322                223455556566666655444

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=84.75  E-value=0.48  Score=43.74  Aligned_cols=68  Identities=7%  Similarity=-0.035  Sum_probs=45.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCC-cee---cCc---ccc--cCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGG-TEH---LGL---PVF--NTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g-~~i---~G~---p~y--~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|+|+|+ |.+|+.++..|.+.|. +++ .+|.+... ++.   .+.   .+.  .++.+...  +.|++|.++|..
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~-v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~--~aDivIn~t~~~  215 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERID-MANRTVEKAERLVREGDERRSAYFSLAEAETRLA--EYDIIINTTSVG  215 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEE-EECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGG--GCSEEEECSCTT
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhc--cCCEEEECCCCC
Confidence            4567899999 8899999999999998 565 88876411 111   111   121  23444444  689999999876


Q ss_pred             hH
Q 020101          111 FA  112 (331)
Q Consensus       111 ~~  112 (331)
                      ..
T Consensus       216 ~~  217 (297)
T 2egg_A          216 MH  217 (297)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=84.63  E-value=1.3  Score=41.96  Aligned_cols=90  Identities=17%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCC-------------C----------ce--ecC--cccc--c
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG-------------G----------TE--HLG--LPVF--N   89 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~-------------g----------~~--i~G--~p~y--~   89 (331)
                      .+||+|-|. |++|+.+.|.+.+.   ++++++.-||...             |          +.  +.|  ++++  .
T Consensus         2 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~   80 (335)
T 3doc_A            2 AVRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVR   80 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCS
T ss_pred             CEEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeec
Confidence            368999999 99999999987765   4678866666210             0          00  123  2344  2


Q ss_pred             CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        90 sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +.++++- +.++|+++-++......+-+...++.|.+.+++-++
T Consensus        81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  124 (335)
T 3doc_A           81 NPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAP  124 (335)
T ss_dssp             STTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCC
Confidence            4555542 247999999999888888889999999998775333

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=84.31  E-value=1.9  Score=40.25  Aligned_cols=85  Identities=11%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCc-----ee------c--C--cccccCHHHhhhcCCCCEEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGT-----EH------L--G--LPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~-----~i------~--G--~p~y~sl~dl~~~~~iDlaii  105 (331)
                      ..||+|||+ |.+|..+...+...|+ + +..+|.+...-     ++      .  .  +....+.++ .+  +.|++|+
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~a-l~--~aD~Vi~   78 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDD-LA--GADVVIV   78 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGG-GT--TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHH-hC--CCCEEEE
Confidence            457999999 9999998888888787 7 44766554200     01      0  1  112245533 33  6899999


Q ss_pred             ec--Chh-------------------hHHHHHHHHHHcCCcEEEEec
Q 020101          106 YV--PPP-------------------FAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       106 ~v--p~~-------------------~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      ++  |..                   ...++++++.+...+.++++.
T Consensus        79 a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~  125 (322)
T 1t2d_A           79 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV  125 (322)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred             eCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            97  421                   345566666666656544333

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=84.24  E-value=1  Score=41.97  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCcee-------cCcc--cccCHHHhhhcCCCCEEEEecC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTEH-------LGLP--VFNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~i-------~G~p--~y~sl~dl~~~~~iDlaii~vp  108 (331)
                      .++..+++|||+ |.+|+.+++.+.. .+.+-+...|+.. .+..       .|++  .+ +++++..  +.|+++.+||
T Consensus       118 ~~~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~-a~~la~~l~~~~g~~~~~~-~~~eav~--~aDIVi~aT~  192 (313)
T 3hdj_A          118 RPRSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYA-SPEILERIGRRCGVPARMA-APADIAA--QADIVVTATR  192 (313)
T ss_dssp             CTTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTC-CHHHHHHHHHHHTSCEEEC-CHHHHHH--HCSEEEECCC
T ss_pred             cCCCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcH-HHHHHHHHHHhcCCeEEEe-CHHHHHh--hCCEEEEccC
Confidence            455678999999 9999999998876 4665455888872 2221       2553  34 8888877  6899999998


Q ss_pred             hh
Q 020101          109 PP  110 (331)
Q Consensus       109 ~~  110 (331)
                      ..
T Consensus       193 s~  194 (313)
T 3hdj_A          193 ST  194 (313)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.09  E-value=1.5  Score=40.49  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG   78 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~   78 (331)
                      +..+|+|||+ |..|..++++|...|..-+..||+...
T Consensus        35 ~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4567899999 889999999999988753337787653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=84.09  E-value=3.9  Score=40.04  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~   76 (331)
                      +..+|+|||. |-+|-...-.+.+.|++++ ++|.+
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A~~G~~V~-g~Did   53 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFALLGHRVV-GYDVN   53 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCCcEE-EEECC
Confidence            3467899998 7777666667777899988 65544

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.06  E-value=1.6  Score=42.64  Aligned_cols=82  Identities=7%  Similarity=-0.076  Sum_probs=56.5

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee------cCccccc---CHHHhhhcCCCCEEEEecCh
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN---TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i------~G~p~y~---sl~dl~~~~~iDlaii~vp~  109 (331)
                      .-+..+|+|||+ |+.|..-++.|.+.|.+++ .|+|+.. +++      .++....   +-+++ +  +.|+++.++..
T Consensus         9 ~l~~~~vlVvGg-G~va~~k~~~L~~~ga~V~-vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l-~--~~~lVi~at~~   82 (457)
T 1pjq_A            9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLT-VNALTFI-PQFTVWANEGMLTLVEGPFDETLL-D--SCWLAIAATDD   82 (457)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEE-EEESSCC-HHHHHHHTTTSCEEEESSCCGGGG-T--TCSEEEECCSC
T ss_pred             ECCCCEEEEECC-CHHHHHHHHHHHhCcCEEE-EEcCCCC-HHHHHHHhcCCEEEEECCCCcccc-C--CccEEEEcCCC
Confidence            345678999999 8999888999999999876 8888642 111      1232221   12333 2  58999988765


Q ss_pred             h-hHHHHHHHHHHcCCcE
Q 020101          110 P-FAAAAILEAMEAELDL  126 (331)
Q Consensus       110 ~-~~~~~v~~~~~~Gi~~  126 (331)
                      . .-..+.++|-++|+..
T Consensus        83 ~~~n~~i~~~a~~~~i~v  100 (457)
T 1pjq_A           83 DTVNQRVSDAAESRRIFC  100 (457)
T ss_dssp             HHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHcCCEE
Confidence            5 4677888888888763

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=84.00  E-value=2  Score=40.54  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCC----------C---Cc---e---------ecC--cccc--cCH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK----------G---GT---E---------HLG--LPVF--NTV   91 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~----------~---g~---~---------i~G--~p~y--~sl   91 (331)
                      .+||+|-|. |++|+.+.|.+.+. .+++++.-|...          +   |+   +         +.|  ++++  .+.
T Consensus         4 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp   82 (338)
T 3lvf_P            4 AVKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDA   82 (338)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred             cEEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEeccc
Confidence            478999999 99999999987765 578885533210          0   10   0         223  3444  356


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++++- +.++|+++-++......+-+...++.|.+.+++-++
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (338)
T 3lvf_P           83 SKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAP  124 (338)
T ss_dssp             GGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred             ccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCC
Confidence            66653 247999999999888888899999999998775333

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=83.94  E-value=2.8  Score=38.74  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=53.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC-------eEEEEeCCCCC-----Cc--ee--------cCcccccCHHHhhhcC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPKKG-----GT--EH--------LGLPVFNTVAEAKAET   98 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~-------~iv~~VnP~~~-----g~--~i--------~G~p~y~sl~dl~~~~   98 (331)
                      +.+||+|+|++|..|+.+...|.+.|+       +++ .+|....     +.  ++        ..+....++.+..+  
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~-l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~--   79 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQ-LLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--   79 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEE-EEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC--
Confidence            356899999999999999988887775       565 6664320     00  11        01122234555555  


Q ss_pred             CCCEEEEecC-----h-----------hhHHHHHHHHHHcC-Cc-EEEEec
Q 020101           99 KANASAIYVP-----P-----------PFAAAAILEAMEAE-LD-LVVCIT  131 (331)
Q Consensus        99 ~iDlaii~vp-----~-----------~~~~~~v~~~~~~G-i~-~ivi~t  131 (331)
                      ++|+++.+..     .           ....++++.+.+.+ .+ .+++++
T Consensus        80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~s  130 (327)
T 1y7t_A           80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (327)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            7999997632     1           11344567777775 65 445444

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=83.85  E-value=2.7  Score=42.69  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCcee---cCcccc-------cC-HHHhhhcCCCCEEEEecC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEH---LGLPVF-------NT-VAEAKAETKANASAIYVP  108 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i---~G~p~y-------~s-l~dl~~~~~iDlaii~vp  108 (331)
                      +..+|+|.|++|-+|+.+++.|.+. |+++++.......-...   .++..+       .+ ++++.+  ++|+++-+..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~--~~D~Vih~Aa  391 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVA  391 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHH--HCSEEEECCC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhc--CCCEEEECce
Confidence            4567999999999999999999987 88887543321110111   122211       11 333444  6899986431


Q ss_pred             h------------------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          109 P------------------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~------------------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .                  .....+++.|.+.| +.++.+++
T Consensus       392 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS  432 (660)
T 1z7e_A          392 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST  432 (660)
T ss_dssp             CCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred             ecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEec
Confidence            1                  12345677788888 66676665

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=83.66  E-value=1.2  Score=40.26  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=50.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE---EEecChhhHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS---AIYVPPPFAAAAILE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla---ii~vp~~~~~~~v~~  118 (331)
                      ...++|.|+++-+|+.+++.|.+.|++++ .++.+.. +.     .-...+++.. ...++.   .+.+.++.+.+++++
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~~~~~-~~-----~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGFDIA-ITGIGDA-EG-----VAPVIAELSG-LGARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCCH-HH-----HHHHHHHHHH-TTCCEEEEECCTTSGGGHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCeEE-EEeCCCH-HH-----HHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHH
Confidence            34577889999999999999999999977 4442210 11     0011222221 122222   245667777888887


Q ss_pred             HHHc--CCcEEEEecCCC
Q 020101          119 AMEA--ELDLVVCITEGI  134 (331)
Q Consensus       119 ~~~~--Gi~~ivi~t~G~  134 (331)
                      +.+.  ++..+|+ ..|+
T Consensus       101 ~~~~~g~iD~lvn-nAg~  117 (280)
T 4da9_A          101 VVAEFGRIDCLVN-NAGI  117 (280)
T ss_dssp             HHHHHSCCCEEEE-ECC-
T ss_pred             HHHHcCCCCEEEE-CCCc
Confidence            7765  6887665 4454

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=83.63  E-value=3.6  Score=36.03  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      ..+++|.|+++.+|+.+.+.|.+.|++++ .++.
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~r   39 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGAKVT-GFDQ   39 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            34578899999999999999999999977 4443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=83.56  E-value=8.4  Score=34.64  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=50.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEE---EecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA---IYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlai---i~vp~~~~~~~v~  117 (331)
                      +...|+|.|+++-+|+.+.+.|.+.|++++ .++.+.  +.     .-..+.+..++...++..   +.+-++.+.+.++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~-~~~r~~--~~-----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~  117 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIA-IAYLDE--EG-----DANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQ  117 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSC--HH-----HHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCCc--hH-----HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            445688899999999999999999999976 444332  11     001122222222233332   4456677777777


Q ss_pred             HHHHc--CCcEEEEec
Q 020101          118 EAMEA--ELDLVVCIT  131 (331)
Q Consensus       118 ~~~~~--Gi~~ivi~t  131 (331)
                      ++.+.  ++..+|+.+
T Consensus       118 ~~~~~~g~iD~lvnnA  133 (291)
T 3ijr_A          118 ETVRQLGSLNILVNNV  133 (291)
T ss_dssp             HHHHHHSSCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence            77664  588766543

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=83.39  E-value=2.6  Score=36.44  Aligned_cols=30  Identities=17%  Similarity=0.115  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG   71 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~   71 (331)
                      ..+|+|.|+++.+|+.+.+.|.+.|++++.
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~~V~~   34 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVL   34 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            456788999999999999999999999773

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=83.36  E-value=1.4  Score=41.33  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCcee--------cCccc-------ccCHHHhhhcCCCCEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEH--------LGLPV-------FNTVAEAKAETKANAS  103 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i--------~G~p~-------y~sl~dl~~~~~iDla  103 (331)
                      +..+|+|+|+ |.+|..++..+...|.  +++ .+|...  +..        .+.|.       +.+-.+...  +.|++
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~-l~D~~~--~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~--~aDvV   77 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELV-VIDVNK--EKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCK--DADIV   77 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSCH--HHHHHHHHHHHHTGGGSSSCCEEEEECGGGGT--TCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEecch--HHHHHHHHHHHhccccccCCeEEEeCcHHHhC--CCCEE
Confidence            3568999998 9999999888887775  555 777643  211        12232       222222233  68999


Q ss_pred             EEecCh----------------hhHHHHHHHHHHcCCcEEEE
Q 020101          104 AIYVPP----------------PFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus       104 ii~vp~----------------~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      |++.+.                ....++++.+.+...+.+++
T Consensus        78 vi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vl  119 (326)
T 3pqe_A           78 CICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL  119 (326)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            998732                12345556666666665443

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=83.36  E-value=1.3  Score=42.08  Aligned_cols=90  Identities=18%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC-------------C----------ce--ecC--cccc--cCH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-------------G----------TE--HLG--LPVF--NTV   91 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~-------------g----------~~--i~G--~p~y--~sl   91 (331)
                      .+||+|-|. |++|+.+.|.+.+. .+++++.-||...             |          +.  +.|  ++++  .+.
T Consensus         4 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp   82 (345)
T 4dib_A            4 MTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRDP   82 (345)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSCG
T ss_pred             cEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCCh
Confidence            578999999 99999999987765 6889866666310             0          00  223  3444  346


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++++- +.++|+++-++......+-+...++.|.+.+++-++
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (345)
T 4dib_A           83 KELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAP  124 (345)
T ss_dssp             GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCC
Confidence            66653 247999999999888888889999999998776433

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=82.92  E-value=3.6  Score=38.36  Aligned_cols=39  Identities=18%  Similarity=0.116  Sum_probs=26.3

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCC
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPK   76 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~   76 (331)
                      +++..++.||+|+|+ |..|....-.+...+.  +++ .+|..
T Consensus         3 ~~~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~-L~Di~   43 (326)
T 2zqz_A            3 SITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIG-IVDIF   43 (326)
T ss_dssp             ---CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSC
T ss_pred             ccccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEE-EEeCC
Confidence            345566789999999 9999887766665553  454 66654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=82.78  E-value=2.8  Score=37.73  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             ccccccCCCCCCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhh
Q 020101           16 SSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK   95 (331)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~   95 (331)
                      +|+-|-.++..|-+.      ++..+...++|.|+++-+|+.+.+.|.+.|++++ .++.+.  +..     -...+++.
T Consensus         8 ~~~~~~~~~~~~~~~------m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~r~~--~~~-----~~~~~~l~   73 (283)
T 3v8b_A            8 SSGVDLGTENLYFQS------MMNQPSPVALITGAGSGIGRATALALAADGVTVG-ALGRTR--TEV-----EEVADEIV   73 (283)
T ss_dssp             -------------------------CCCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESSH--HHH-----HHHHHHHT
T ss_pred             ccccccccchhhhhh------hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeCCH--HHH-----HHHHHHHH
Confidence            445555444444332      3323345678899999999999999999999977 554432  110     01122222


Q ss_pred             hcCCCCEE---EEecChhhHHHHHHHHHHc--CCcEEEEecCC
Q 020101           96 AETKANAS---AIYVPPPFAAAAILEAMEA--ELDLVVCITEG  133 (331)
Q Consensus        96 ~~~~iDla---ii~vp~~~~~~~v~~~~~~--Gi~~ivi~t~G  133 (331)
                      . ...++.   .+.+.++.+.++++++.+.  ++..+|+ ..|
T Consensus        74 ~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVn-nAg  114 (283)
T 3v8b_A           74 G-AGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVA-NAG  114 (283)
T ss_dssp             T-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE-CCC
T ss_pred             h-cCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEE-CCC
Confidence            1 122222   2445666777777777664  5887554 444

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=82.75  E-value=2.3  Score=38.01  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      ..+..+|+|.|+++-+|+.+++.|.+.|++++ .++.+.  +...+         .    ..-+..+.+.++.+.+++++
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~-~~~r~~--~~~~~---------~----~~~~~~Dv~~~~~v~~~~~~   74 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVV-SVSLDE--KSDVN---------V----SDHFKIDVTNEEEVKEAVEK   74 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEESCC----CTT---------S----SEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCCc--hhccC---------c----eeEEEecCCCHHHHHHHHHH
Confidence            34566788899999999999999999999977 444332  11111         0    00122345667777777777


Q ss_pred             HHHc--CCcEEEEecCCC
Q 020101          119 AMEA--ELDLVVCITEGI  134 (331)
Q Consensus       119 ~~~~--Gi~~ivi~t~G~  134 (331)
                      +.+.  ++..+|+ ..|.
T Consensus        75 ~~~~~g~iD~lv~-nAg~   91 (269)
T 3vtz_A           75 TTKKYGRIDILVN-NAGI   91 (269)
T ss_dssp             HHHHHSCCCEEEE-CCCC
T ss_pred             HHHHcCCCCEEEE-CCCc
Confidence            7665  6887664 4453

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=82.72  E-value=3.6  Score=38.07  Aligned_cols=86  Identities=12%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC--CeEEEEeCCCC-CCc--eec-C-----cccc---cCHHHhhhcCCCCEEEEecC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKK-GGT--EHL-G-----LPVF---NTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g--~~iv~~VnP~~-~g~--~i~-G-----~p~y---~sl~dl~~~~~iDlaii~vp  108 (331)
                      +||+|+|++|..|+.+...|...+  .+++ .+|... .+.  ++. .     +..+   .++++..+  +.|+++++..
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~-L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~--~aDvVvi~ag   77 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLT-LYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK--GCDVVVIPAG   77 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEE-EEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT--TCSEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEE-EEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhC--CCCEEEECCC
Confidence            378999999999999888887766  4554 544332 111  111 1     2222   24666555  7999999863


Q ss_pred             h----------------hhHHHHHHHHHHcCCcEEEEec
Q 020101          109 P----------------PFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       109 ~----------------~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      .                ....++++.+.+.+.+..+++.
T Consensus        78 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  116 (314)
T 1mld_A           78 VPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII  116 (314)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE
Confidence            2                2355666777777766544443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=82.69  E-value=1.5  Score=43.10  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=46.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe--CCCCCC-ceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V--nP~~~g-~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      ...+|+|+|. |++|+.+++.++.+|.+++ .+  ||...- ....|+.+ .+++++..  ..|+++.+++..
T Consensus       246 ~GKTVgVIG~-G~IGr~vA~~lrafGa~Vi-v~d~dp~~a~~A~~~G~~v-v~LeElL~--~ADIVv~atgt~  313 (464)
T 3n58_A          246 AGKVAVVCGY-GDVGKGSAQSLAGAGARVK-VTEVDPICALQAAMDGFEV-VTLDDAAS--TADIVVTTTGNK  313 (464)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEE-CCHHHHGG--GCSEEEECCSSS
T ss_pred             cCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EEeCCcchhhHHHhcCcee-ccHHHHHh--hCCEEEECCCCc
Confidence            4567889999 9999999999999999976 44  443200 01245543 47889887  789999887543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=82.54  E-value=2.6  Score=37.87  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHH
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAA  114 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~  114 (331)
                      ..+.-+...++|.|+++-+|+.+.+.|.+.|++++ .++.+.  +..  ......+.+...  ++. +..+.+.++.+.+
T Consensus        26 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~r~~--~~~--~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~   98 (276)
T 3r1i_A           26 DLFDLSGKRALITGASTGIGKKVALAYAEAGAQVA-VAARHS--DAL--QVVADEIAGVGG--KALPIRCDVTQPDQVRG   98 (276)
T ss_dssp             GGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESSG--GGG--HHHHHHHHHTTC--CCEEEECCTTCHHHHHH
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCCH--HHH--HHHHHHHHhcCC--eEEEEEcCCCCHHHHHH
Confidence            44444556788899999999999999999999976 444432  110  011111222111  222 2235566777777


Q ss_pred             HHHHHHHc--CCcEEEEecCCC
Q 020101          115 AILEAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       115 ~v~~~~~~--Gi~~ivi~t~G~  134 (331)
                      +++++.+.  ++..+|+ ..|.
T Consensus        99 ~~~~~~~~~g~iD~lvn-nAg~  119 (276)
T 3r1i_A           99 MLDQMTGELGGIDIAVC-NAGI  119 (276)
T ss_dssp             HHHHHHHHHSCCSEEEE-CCCC
T ss_pred             HHHHHHHHcCCCCEEEE-CCCC
Confidence            88777665  6888665 4443

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=82.21  E-value=2.6  Score=36.91  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEeCCCCCCceecCcccccCHHHhhhcC-CCCEE---EEecCh-hhHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAET-KANAS---AIYVPP-PFAAAA  115 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~-~iDla---ii~vp~-~~~~~~  115 (331)
                      ..+|+|.|+++-+|+.+++.|.+.|++ ++ .++.+.  ..       ..++++.+.. ..++.   .+.+.+ +.+.+.
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~-~~~r~~--~~-------~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~   74 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNLKNFV-ILDRVE--NP-------TALAELKAINPKVNITFHTYDVTVPVAESKKL   74 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEE-EEESSC--CH-------HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEE-EEecCc--hH-------HHHHHHHHhCCCceEEEEEEecCCChHHHHHH
Confidence            456788999999999999999999996 55 554432  11       1122322210 11222   133334 566666


Q ss_pred             HHHHHHc--CCcEEEEecCCC
Q 020101          116 ILEAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       116 v~~~~~~--Gi~~ivi~t~G~  134 (331)
                      ++++.+.  ++..+|+ ..|+
T Consensus        75 ~~~~~~~~g~id~lv~-~Ag~   94 (254)
T 1sby_A           75 LKKIFDQLKTVDILIN-GAGI   94 (254)
T ss_dssp             HHHHHHHHSCCCEEEE-CCCC
T ss_pred             HHHHHHhcCCCCEEEE-CCcc
Confidence            6666554  6887654 5554

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=81.88  E-value=1.7  Score=39.13  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=50.4

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE---EEecChhhHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS---AIYVPPPFAAAAILE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla---ii~vp~~~~~~~v~~  118 (331)
                      ...++|.|+++-+|+.+++.|.+.|++++ .++.+.. +..     -...+++.+.....+.   .+.+.++.+.+++++
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~-~~~r~~~-~~~-----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~   97 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGANIV-LNGFGAP-DEI-----RTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAM   97 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEE-EECCCCH-HHH-----HHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCCCh-HHH-----HHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHH
Confidence            45578899999999999999999999977 5554220 110     0011222111112222   245566777777777


Q ss_pred             HHHc--CCcEEEEecCCC
Q 020101          119 AMEA--ELDLVVCITEGI  134 (331)
Q Consensus       119 ~~~~--Gi~~ivi~t~G~  134 (331)
                      +.+.  ++..+|+ ..|.
T Consensus        98 ~~~~~g~iD~lv~-nAg~  114 (281)
T 3v2h_A           98 VADRFGGADILVN-NAGV  114 (281)
T ss_dssp             HHHHTSSCSEEEE-CCCC
T ss_pred             HHHHCCCCCEEEE-CCCC
Confidence            7665  5887664 4453

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=81.50  E-value=3.5  Score=38.27  Aligned_cols=80  Identities=13%  Similarity=-0.019  Sum_probs=48.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC------ceecCcccccCHHHhhh-cCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG------TEHLGLPVFNTVAEAKA-ETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g------~~i~G~p~y~sl~dl~~-~~~iDlaii~vp~~~~~~~  115 (331)
                      .+|+|+|. |..|..+++.+++.|++++ .+|++...      ++..-++.+.+.+.+.. ..++|+++...-.......
T Consensus         2 K~I~ilGg-g~~g~~~~~~Ak~~G~~vv-~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~   79 (363)
T 4ffl_A            2 KTICLVGG-KLQGFEAAYLSKKAGMKVV-LVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIEF   79 (363)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHHH
Confidence            56889997 7778888888899999987 66655421      11222334444333322 2379988765444444455


Q ss_pred             HHHHHHcCC
Q 020101          116 ILEAMEAEL  124 (331)
Q Consensus       116 v~~~~~~Gi  124 (331)
                      ..++.+.+.
T Consensus        80 ~~~~~~~~~   88 (363)
T 4ffl_A           80 LNSIKEKFS   88 (363)
T ss_dssp             HHHHGGGCS
T ss_pred             HHHHHHHCC
Confidence            566666553

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=81.33  E-value=3  Score=40.53  Aligned_cols=85  Identities=20%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeC-------CCCCC-cee-------cCccccc-----CHHHhhhcC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-------PKKGG-TEH-------LGLPVFN-----TVAEAKAET   98 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~Vn-------P~~~g-~~i-------~G~p~y~-----sl~dl~~~~   98 (331)
                      .+..+|+|.|. |++|+..++.|.+ .|.++++..|       |+..- +.+       ..+.-|+     +.+++.+ .
T Consensus       207 l~g~~vaVqG~-GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~-~  284 (415)
T 2tmg_A          207 PKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE-L  284 (415)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT-C
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc-C
Confidence            35678999998 9999999999998 9999987644       42210 000       0111121     3445543 4


Q ss_pred             CCCEEEEecChhhHHHHHHHHHHcCCcEEE
Q 020101           99 KANASAIYVPPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus        99 ~iDlaii~vp~~~~~~~v~~~~~~Gi~~iv  128 (331)
                      ++|+++-|......  .-+.+.+.+.+.|+
T Consensus       285 ~~DIliP~A~~n~i--~~~~a~~l~ak~V~  312 (415)
T 2tmg_A          285 DVDILVPAALEGAI--HAGNAERIKAKAVV  312 (415)
T ss_dssp             SCSEEEECSSTTSB--CHHHHTTCCCSEEE
T ss_pred             CCcEEEecCCcCcc--CcccHHHcCCeEEE
Confidence            78999987654433  12444455778644

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=81.19  E-value=4.7  Score=34.93  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~   76 (331)
                      .+++|.|+++.+|+.+.+.|.+.|++++ .++.+
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~~V~-~~~r~   35 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGYRVA-IASRN   35 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            4578899999999999999999999977 55443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.85  E-value=4.4  Score=38.30  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus        33 ~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4677899999 88999999999999986444777765

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=80.84  E-value=4.2  Score=36.89  Aligned_cols=84  Identities=14%  Similarity=0.097  Sum_probs=52.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEE---EEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS---AIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDla---ii~vp~~~~~~~v~  117 (331)
                      +...|+|.|+++-+|+.+++.|.+.|++++ .++.+.  +..     -...+++... ..++.   .+.+..+.+.+.++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~-~~~r~~--~~~-----~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~  100 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLV-LSDVDQ--PAL-----EQAVNGLRGQ-GFDAHGVVCDVRHLDEMVRLAD  100 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCH--HHH-----HHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HHH-----HHHHHHHHhc-CCceEEEEccCCCHHHHHHHHH
Confidence            345678899999999999999999999977 554432  111     1112222221 22322   34556677777777


Q ss_pred             HHHHc--CCcEEEEecCCC
Q 020101          118 EAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       118 ~~~~~--Gi~~ivi~t~G~  134 (331)
                      ++.+.  ++..+|+ ..|+
T Consensus       101 ~~~~~~g~id~lvn-nAg~  118 (301)
T 3tjr_A          101 EAFRLLGGVDVVFS-NAGI  118 (301)
T ss_dssp             HHHHHHSSCSEEEE-CCCC
T ss_pred             HHHHhCCCCCEEEE-CCCc
Confidence            77665  6888664 5553

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=80.71  E-value=2.2  Score=42.75  Aligned_cols=36  Identities=11%  Similarity=0.023  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      ++.+|+|||+ |-.|..++++|...|..-+..||+..
T Consensus        31 ~~~~VlvvG~-GGlGseiak~La~aGVg~itlvD~D~   66 (531)
T 1tt5_A           31 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQ   66 (531)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECCCB
T ss_pred             hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3567899999 88999999999999986444888764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=80.66  E-value=4.4  Score=35.53  Aligned_cols=85  Identities=13%  Similarity=0.024  Sum_probs=52.5

Q ss_pred             CCCeEEEEEcCC--CCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhc-CCCCE-EEEecChhhHHHH
Q 020101           40 DKNTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE-TKANA-SAIYVPPPFAAAA  115 (331)
Q Consensus        40 ~k~~~VaIvGas--gk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~-~~iDl-aii~vp~~~~~~~  115 (331)
                      .+..+|+|.|++  +.+|+.+.+.|.+.|++++ .++.+.  ..      -..++++.++ ..+.. ..+.+..+.+...
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~-~~~r~~--~~------~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~   82 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELA-FTYVGD--RF------KDRITEFAAEFGSELVFPCDVADDAQIDAL   82 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE-EEESSG--GG------HHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEE-EEecch--hh------HHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence            456678899998  8899999999999999977 443322  10      1113333221 12222 2355667778888


Q ss_pred             HHHHHHc--CCcEEEEecCCC
Q 020101          116 ILEAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       116 v~~~~~~--Gi~~ivi~t~G~  134 (331)
                      ++++.+.  ++..+| ...|+
T Consensus        83 ~~~~~~~~g~id~lv-~nAg~  102 (271)
T 3ek2_A           83 FASLKTHWDSLDGLV-HSIGF  102 (271)
T ss_dssp             HHHHHHHCSCEEEEE-ECCCC
T ss_pred             HHHHHHHcCCCCEEE-ECCcc
Confidence            8887765  466655 45553

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=80.54  E-value=3.4  Score=36.67  Aligned_cols=84  Identities=20%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEE---EecChhhHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA---IYVPPPFAAAAILE  118 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlai---i~vp~~~~~~~v~~  118 (331)
                      ...|+|.|+++.+|+.+++.|.+.|++++.......  +...  ..   .+++.+ ...++..   +.+..+.+.+++++
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~--~~~~--~~---~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~   97 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR--EAAD--AV---VAAITE-SGGEAVAIPGDVGNAADIAAMFSA   97 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHHH--HH---HHHHHH-TTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh--hHHH--HH---HHHHHh-cCCcEEEEEcCCCCHHHHHHHHHH
Confidence            345778899999999999999999999763334332  1100  01   112211 1222222   34556667777777


Q ss_pred             HHHc--CCcEEEEecCCC
Q 020101          119 AMEA--ELDLVVCITEGI  134 (331)
Q Consensus       119 ~~~~--Gi~~ivi~t~G~  134 (331)
                      +.+.  ++..+|. ..|+
T Consensus        98 ~~~~~g~id~li~-nAg~  114 (272)
T 4e3z_A           98 VDRQFGRLDGLVN-NAGI  114 (272)
T ss_dssp             HHHHHSCCCEEEE-CCCC
T ss_pred             HHHhCCCCCEEEE-CCCC
Confidence            7664  6887654 4443

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=80.38  E-value=2.5  Score=41.52  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=54.9

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCC-Cc-ee-----------cCccccc--------CHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKG-GT-EH-----------LGLPVFN--------TVA   92 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~-g~-~i-----------~G~p~y~--------sl~   92 (331)
                      +..+|+|.|. |++|+..++.|.+.|.++++.       +||+.. -. ++           ..+.-|+        +-+
T Consensus       229 ~g~~v~VqG~-GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~~~  307 (449)
T 1bgv_A          229 VGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGE  307 (449)
T ss_dssp             TTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeCch
Confidence            5678899998 999999999999999998864       556532 00 00           0111110        111


Q ss_pred             HhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEE
Q 020101           93 EAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus        93 dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~iv  128 (331)
                      ++. +.++|+++=|. +.....+.+..+...|++.|+
T Consensus       308 e~~-~~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~  343 (449)
T 1bgv_A          308 KPW-GQKVDIIMPCATQNDVDLEQAKKIVANNVKYYI  343 (449)
T ss_dssp             CGG-GSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEE
T ss_pred             hhh-cCCcceeeccccccccchhhHHHHHhcCCeEEE
Confidence            222 23688888544 445567778888888999744

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=80.13  E-value=4.7  Score=39.78  Aligned_cols=67  Identities=12%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CCeEEEEEcCCCCCC---------cHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           41 KNTRVICQGITGKNG---------TFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        41 k~~~VaIvGasgk~G---------~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      +..+|+|.|.+-|++         ..+++.|.+.|.++. ..||..  .....+....++++..+  +.|++|+.|..+.
T Consensus       352 ~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~-~~DP~~--~~~~~~~~~~~~~~~~~--~ad~vvi~t~~~~  426 (478)
T 3g79_A          352 DGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVM-VHDPYV--VNYPGVEISDNLEEVVR--NADAIVVLAGHSA  426 (478)
T ss_dssp             TTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEE-EECSSC--CCBTTBCEESCHHHHHT--TCSEEEECSCCHH
T ss_pred             CCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEE-EECCCc--ccccCcceecCHHHHHh--cCCEEEEecCCHH
Confidence            456799999986654         356788888999877 889987  44444444467888776  7999999998765


Q ss_pred             H
Q 020101          112 A  112 (331)
Q Consensus       112 ~  112 (331)
                      .
T Consensus       427 f  427 (478)
T 3g79_A          427 Y  427 (478)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=80.02  E-value=0.84  Score=43.26  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      ..+|+|+|+ |.+|+..++.+...|.+++ .+|++.
T Consensus       166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~-~~d~~~  199 (369)
T 2eez_A          166 PASVVILGG-GTVGTNAAKIALGMGAQVT-ILDVNH  199 (369)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCH
Confidence            367889999 9999999999999999866 666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1euca1	130	c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c	6e-56
d2nu7a1	119	c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c	1e-52
d1oi7a1	121	c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c	1e-52
d1euca2	176	c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alph	7e-45
d2nu7a2	166	c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alph	6e-41
d1oi7a2	167	c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alph	2e-39
d2csua2	161	c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chai	2e-25

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  176 bits (447), Expect = 6e-56
 Identities = 89/123 (72%), Positives = 101/123 (82%)

Query: 35  PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
             ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFNTV EA
Sbjct: 8   KHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEA 67

Query: 95  KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
           K +T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK  L  Q KTRL
Sbjct: 68  KEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRL 127

Query: 155 VGP 157
           +GP
Sbjct: 128 IGP 130

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

 Score =  167 bits (424), Expect = 1e-52
 Identities = 76/120 (63%), Positives = 92/120 (76%), Gaps = 1/120 (0%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 1   ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 60

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
            T A AS IYVP PF   +ILEA++A + L++ ITEGIP  DM+ VK  L +++  R++G
Sbjct: 61  ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIG 119

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

 Score =  167 bits (424), Expect = 1e-52
 Identities = 64/120 (53%), Positives = 83/120 (69%), Gaps = 1/120 (0%)

Query: 37  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
           + V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2   ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61

Query: 97  ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
             + +AS I+VP P AA A LEA  A + L+V ITEGIP  DMVR    +     +RL+G
Sbjct: 62  HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIG 120

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  149 bits (376), Expect = 7e-45
 Identities = 121/175 (69%), Positives = 143/175 (81%), Gaps = 3/175 (1%)

Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
           NCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDP
Sbjct: 1   NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDP 60

Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEK---PIVAFIAGLT 274
           FNGT+F DC+  F+ DP TEGIILIGEIGG AEE+AA  +K+  +     P+V+FIAGLT
Sbjct: 61  FNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLT 120

Query: 275 APPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 329
           APPGRRMGHAGAI++GGKG A++KI  L+ AGV V  SPA++G  + + F++R +
Sbjct: 121 APPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 175

>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  138 bits (349), Expect = 6e-41
 Identities = 113/166 (68%), Positives = 131/166 (78%), Gaps = 1/166 (0%)

Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
           N PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP
Sbjct: 1   NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDP 60

Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277
             G+NF+D +  F  DPQTE I++IGEIGG+AEE+AAA IKE  T KP+V +IAG+TAP 
Sbjct: 61  IPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPK 119

Query: 278 GRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 323
           G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V
Sbjct: 120 GKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV 165

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score =  134 bits (339), Expect = 2e-39
 Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 1/167 (0%)

Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
           NCPG+I   E KIGIMPG++ K GR+GI+SRSGTLTYEA    +  GLG +T VGIGGDP
Sbjct: 1   NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDP 60

Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277
             GT F D +  F  DP+TE ++LIGEIGG+ EE+AAA +K+    KP+V FI G +AP 
Sbjct: 61  VIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMK-KPVVGFIGGRSAPK 119

Query: 278 GRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 324
           G+RMGHAGAI+ G  GT + K++   EAG+ V ++  +I   + +  
Sbjct: 120 GKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 166

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 97.8 bits (243), Expect = 2e-25
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 16/166 (9%)

Query: 170 IGIMPGYIH---------KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG 220
           +GIM  ++          K G +  +S+SG L    V++T    +G S  + +G      
Sbjct: 1   VGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-- 58

Query: 221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR 280
            +F + +       + + I L  E     ++    + K    +KPI+A  AG +    R 
Sbjct: 59  VDFAELMEYLADTEEDKAIALYIEGVRNGKK-FMEVAKRVTKKKPIIALKAGKSESGARA 117

Query: 281 MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 326
                  ++   G+ +      +++GV V  +  ++ +     F Q
Sbjct: 118 ASSHTGSLA---GSWKIYEAAFKQSGVLVANTIDEMLSM-ARAFSQ 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1euca2	176	Succinyl-CoA synthetase, alpha-chain, C-terminal d	100.0
d1oi7a2	167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	100.0
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	100.0
d2nu7a2	166	Succinyl-CoA synthetase, alpha-chain, C-terminal d	100.0
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	99.93
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.91
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	99.9
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	99.87
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.87
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.87
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	99.84
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	99.47
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	99.39
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.29
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	99.02
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.99
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.98
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.97
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.96
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	98.84
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.84
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	98.82
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.78
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.16
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.15
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	98.11
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.92
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.89
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.65
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.64
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.63
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.58
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.56
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.45
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.45
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.45
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.4
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.38
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.3
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.28
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.22
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.22
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.21
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.2
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	97.1
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.08
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.97
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	96.96
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.93
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	96.9
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.88
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.78
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.61
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.54
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.52
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	96.26
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.23
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.06
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.05
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.02
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.98
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.79
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.65
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.62
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.56
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.44
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.33
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	95.3
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.24
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.15
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	95.06
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.02
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.95
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.83
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.82
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.76
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.58
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.48
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.44
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.37
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.32
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.19
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.04
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.97
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.77
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.59
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.45
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.2
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.08
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	92.92
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.91
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.87
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.65
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	92.53
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.15
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.03
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	91.96
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	91.91
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.78
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.75
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.7
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.28
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.28
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.73
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.59
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.46
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.96
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.72
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.61
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.25
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.01
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.97
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.64
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	88.61
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.46
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.34
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.05
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	87.78
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.14
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	85.86
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.63
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.61
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	85.27
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.23
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	85.15
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.03
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.02
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.7
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.2
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	84.1
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	83.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	83.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.74
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.09
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	83.01
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.45
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	82.4
d1xdpa3	187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	82.29
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.18
d2o8ra3	188	Polyphosphate kinase, PPK {Porphyromonas gingivali	82.18
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	82.03
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	81.94
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	81.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	81.51
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	81.09
d1wd7a_	254	Probable uroporphyrinogen-III synthase {Thermus th	80.92
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	80.91
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	80.84
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	80.68
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	80.64

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.3e-40  Score=289.18  Aligned_cols=168  Identities=67%  Similarity=1.136  Sum_probs=149.3

Q ss_pred             CCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q 020101          158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTE  237 (331)
Q Consensus       158 nc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~  237 (331)
                      ||+|+++|+....+++|...++||+||+|||||+++.++++++.++|+|+++++++||..+.|+++.|+|+||.+||+|+
T Consensus         1 NC~Gii~p~~~~~~~~~~~~~~~G~iaivSQSG~l~~~l~~~~~~~g~g~~~~~~~g~~~~~~~~~~d~l~~~~~d~~t~   80 (176)
T d1euca2           1 NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATE   80 (176)
T ss_dssp             SCCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSCSSCSCCHHHHHHHHHHCTTCC
T ss_pred             CCCeEEccccceeeEcCCcCCCCCCEEEEeCCcHHHHHHHHHHHhcCCceEEEEecccchhhhhHHHHHHHHHHhhccCc
Confidence            99999999844456667667899999999999999999999999999999999999888666999999999999999999


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCCC----CCCcccccCCCCCHHHHHHHHHHcCCeEe
Q 020101          238 GIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRRM----GHAGAIVSGGKGTAQDKIKTLREAGVTVV  310 (331)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~~----sHtga~a~~~~g~~~~~~a~~~~aGv~~v  310 (331)
                      +|++|+|+++++++..++|+++.+   ++||||++|+||+....+++    +|||+++    |++++|+++|||+||++|
T Consensus        81 ~i~~~~E~~~~~~~~~~~~~~a~~~~~~~kPvv~~k~grs~~~~~~~~~a~s~tgs~a----gs~~~~~aafrqaGvi~v  156 (176)
T d1euca2          81 GIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGK----GGAKEKITALQSAGVVVS  156 (176)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHHSSSSSCCCEEEEEECTTCCTTSCCSSTTCCCBTTB----SCHHHHHHHHHHTTCEEC
T ss_pred             ccceEEEeeccchhhhHHHHHHHHhccCCCceEEEeccccccccccccccchhccCCC----CCHHHHHHHHHHCCCeEc
Confidence            999999999888888888888775   78999999999997633334    5566666    999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHhcCC
Q 020101          311 ESPAKIGAAMLEVFKQRGL  329 (331)
Q Consensus       311 ~~~~el~~~~~a~~~~~~~  329 (331)
                      +|++||.++++.+|+.|+|
T Consensus       157 ~s~~El~~~l~~~~~~~~~  175 (176)
T d1euca2         157 MSPAQLGTTIYKEFEKRKM  175 (176)
T ss_dssp             SSGGGHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999886

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7e-41  Score=290.14  Aligned_cols=163  Identities=49%  Similarity=0.842  Sum_probs=133.9

Q ss_pred             CCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q 020101          158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTE  237 (331)
Q Consensus       158 nc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~  237 (331)
                      ||+|+++|...+++++|...++||+||+|||||+++.++++++.++|+|+|+++++||+.+.|+++.|+++||.+||+|+
T Consensus         1 NC~Gii~p~~~~~g~~p~~~~~~G~va~iSQSG~~~~~~~~~~~~~g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D~~t~   80 (167)
T d1oi7a2           1 NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETE   80 (167)
T ss_dssp             SSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCC
T ss_pred             CCCcEEccCcceEeecccccCCCCcEEEEEeccHHHHHHHHHHHHcCCCceeEEEecceeecCchHHHHHHHHhhccccc
Confidence            99999999866788888777899999999999999999999999999999999999999767899999999999999999


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHh
Q 020101          238 GIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPA  314 (331)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~  314 (331)
                      +|++|+|++    +++++|+++++   .+||+|++|.|++.+.+++++||++++....|++++++++|||+||++++|++
T Consensus        81 vI~l~~E~~----~~~~~f~~~~~~~~~~kpvvv~~~g~~a~~~~~~~~a~a~~~s~~g~~~~~~aaf~qaGv~~v~~~~  156 (167)
T d1oi7a2          81 AVVLIGEIG----GSDEEEAAAWVKDHMKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTID  156 (167)
T ss_dssp             EEEEEECSS----SSHHHHHHHHHHHHCCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBCSSHH
T ss_pred             eeeEeeecc----chHHHHHHHHHHHhcCCceEEEeccccccccccccccchhhcCCCCCHHHHHHHHHHCCCEEcCCHH
Confidence            999999995    57888888775   88999999988887646668888887766669999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020101          315 KIGAAMLEVF  324 (331)
Q Consensus       315 el~~~~~a~~  324 (331)
                      ||+|+++..+
T Consensus       157 El~d~lk~~l  166 (167)
T d1oi7a2         157 EIVELVKKAL  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988643

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.8e-41  Score=288.89  Aligned_cols=151  Identities=20%  Similarity=0.344  Sum_probs=125.4

Q ss_pred             CCcccCC-CcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccE
Q 020101          160 PGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEG  238 (331)
Q Consensus       160 ~Gi~~p~-~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~  238 (331)
                      +|++||+ +++.+|.|.  +++|+||+|||||+++.++++++.++|+|||++||+||++  |+++.|+|+||.+||+||+
T Consensus         1 lGi~n~~~~l~~tf~~~--~~~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~--~~~~~d~l~~l~~D~~t~~   76 (161)
T d2csua2           1 VGIMNTHVDLNATFITV--AKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMA--DVDFAELMEYLADTEEDKA   76 (161)
T ss_dssp             CEEEEGGGTEEEESSCC--CEECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCC--SSCHHHHHHHHTTCSSCCE
T ss_pred             CeeeeCcCCcccccCCC--CCCCCEEEEECCHHHHHHHHHHHHhCCCCeeEEEecCCcc--ccCHHHHHHHHhcCCCCcE
Confidence            6899998 888888764  6899999999999999999999999999999999999998  9999999999999999999


Q ss_pred             EEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCCH
Q 020101          239 IILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVESP  313 (331)
Q Consensus       239 I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~  313 (331)
                      |++|+|+++    ++++|++++|   ++||||++|+||++. +.+  .+|||+++    |++++++++|||+|+++++|+
T Consensus        77 i~l~~E~~~----~~~~f~~~~r~~~~~Kpvv~~k~G~s~~-g~~aa~sHtga~a----g~~~~~~a~~~~aGvi~v~~~  147 (161)
T d2csua2          77 IALYIEGVR----NGKKFMEVAKRVTKKKPIIALKAGKSES-GARAASSHTGSLA----GSWKIYEAAFKQSGVLVANTI  147 (161)
T ss_dssp             EEEEESCCS----CHHHHHHHHHHHHHHSCEEEEECC-----------------------CHHHHHHHHHHTTCEEESSH
T ss_pred             EEEEecCCc----CHHHHHHHHHHHhccCCeeEEEeecccc-ccccccccccccc----ccHHHHHHHHHHCCceEeCCH
Confidence            999999854    6788888776   789999999999998 665  79999999    899999999999999999999


Q ss_pred             hHHHHHHHHH
Q 020101          314 AKIGAAMLEV  323 (331)
Q Consensus       314 ~el~~~~~a~  323 (331)
                      +||+++++.+
T Consensus       148 ~el~~~a~~l  157 (161)
T d2csua2         148 DEMLSMARAF  157 (161)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-39  Score=280.56  Aligned_cols=161  Identities=58%  Similarity=0.929  Sum_probs=144.8

Q ss_pred             CCCCcccCCCcccccCCCCCCCCCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q 020101          158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTE  237 (331)
Q Consensus       158 nc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~  237 (331)
                      ||+|+++|.....+++|...++||+||+|||||+++.++++++.++++|+|+++|+||+.+.|+++.|+++|+.+||.|+
T Consensus         1 N~~GiI~P~~~~~g~~~~~~~~~G~iaiiSQSG~~~~~l~~~~~~~~~g~s~~vs~Gn~~~~~~~~~~~~~~~~dd~~t~   80 (166)
T d2nu7a2           1 NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTE   80 (166)
T ss_dssp             SCCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCC
T ss_pred             CCCcEEcCCccceeeccccCCCCCCEEEEECCchHHHHHHHHhhhhhcCcceeeccCCCcccchHHHHHHHhhccCCccE
Confidence            99999999866678888777999999999999999999999999999999999999999877899999999999999999


Q ss_pred             EEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCC--CCCCcccccCCCCCHHHHHHHHHHcCCeEeCC
Q 020101          238 GIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAPPGRR--MGHAGAIVSGGKGTAQDKIKTLREAGVTVVES  312 (331)
Q Consensus       238 ~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~  312 (331)
                      +|++|.|.+    +++++|..+++   ++||||+||+|||+. +++  .+||+++++ ..|++++|+++|||+||++++|
T Consensus        81 vi~~~~e~~----~~~~~~~~~~~~~~~~KPvV~~k~Grs~~-g~~aa~sht~~~a~-~~g~~~~~~aa~r~aGvi~v~~  154 (166)
T d2nu7a2          81 AIVMIGEIG----GSAEEEAAAYIKEHVTKPVVGYIAGVTAP-KGKRMGHAGAIIAG-GKGTADEKFAALEAAGVKTVRS  154 (166)
T ss_dssp             EEEEEEESS----SSHHHHHHHHHHHHCCSCEEEEEECTTCC-TTCCCSSTTCCCGG-GCCCHHHHHHHHHTTTCEECSS
T ss_pred             EEEEEEecc----cchhhHHHHHHHHhcCCCeEEEeCCcCCc-chhhhhccchhccC-CCCCHHHHHHHHHHCCceEeCC
Confidence            999999985    45666666543   899999999999998 665  689999883 3489999999999999999999


Q ss_pred             HhHHHHHHHHHH
Q 020101          313 PAKIGAAMLEVF  324 (331)
Q Consensus       313 ~~el~~~~~a~~  324 (331)
                      ++||++++++++
T Consensus       155 ~~el~~~l~~vl  166 (166)
T d2nu7a2         155 LADIGEALKTVL  166 (166)
T ss_dssp             GGGHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999863

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=6.2e-27  Score=193.72  Aligned_cols=118  Identities=23%  Similarity=0.336  Sum_probs=102.2

Q ss_pred             cccccCCCCeEEEEEcCCCCC---CcHHHHHHHHcC-CeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVFVDKNTRVICQGITGKN---GTFHTEQAIEYG-TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~---G~~~~~~l~~~g-~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |+.||.||++  +|||+|.+.   |+.++++|++.+ ++++ +|||+.  ++++|++||+|++|+|+  .+|++++++|+
T Consensus         2 L~~lf~PksI--AVVGaS~~~~~~g~~v~~~L~~~~~g~v~-pVnP~~--~~i~G~~~y~sl~dlp~--~vDlvvi~vp~   74 (129)
T d2csua1           2 LDYFFNPKGI--AVIGASNDPKKLGYEVFKNLKEYKKGKVY-PVNIKE--EEVQGVKAYKSVKDIPD--EIDLAIIVVPK   74 (129)
T ss_dssp             CCTTTSCSEE--EEETCCSCTTSHHHHHHHHHTTCCSSEEE-EECSSC--SEETTEECBSSTTSCSS--CCSEEEECSCH
T ss_pred             hhHhCCCCeE--EEEccCCCCCCcHHHHHHHHHHcCCCcEE-EeccCc--cccCCeEeecchhhcCC--CCceEEEecCh
Confidence            6789988874  669999554   556778887655 5665 999998  89999999999999998  89999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhH------HHHHHHHHhccCCcEEEccCC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNC  159 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~------~~~l~~~a~~~~gi~viGPnc  159 (331)
                      +.+++++++|.++|++.+|+++.||+|.+      .++|.+.+ +++|++++||||
T Consensus        75 ~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a-~~~girv~GPNC  129 (129)
T d2csua1          75 RFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIA-HKYGMRIIGPNC  129 (129)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHH-HHHTCEEECSSC
T ss_pred             HHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHH-HHcCCEEeCCCC
Confidence            99999999999999999999999998743      23566777 899999999999

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=5.3e-24  Score=173.32  Aligned_cols=129  Identities=71%  Similarity=1.117  Sum_probs=121.2

Q ss_pred             CCCCCCCCcccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEE
Q 020101           26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        26 ~~~~~~~~l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      ||+++   ..+||.+|+.||+|.|.+|+.|+++.+.+++||.+++++|+|...|+++.|+|+|++++|..+++++|..++
T Consensus         2 ~~~~~---~~sIli~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvI   78 (130)
T d1euca1           2 SYTAS---RKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVI   78 (130)
T ss_dssp             CGGGG---GGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             Ccccc---ceeEEEcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEE
Confidence            57777   789999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEcc
Q 020101          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP  157 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGP  157 (331)
                      |+||..+.+++.||+++|++.++++|+|++..|+.++.+.+.++.+.+++||
T Consensus        79 fVPp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~liGP  130 (130)
T d1euca1          79 YVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGP  130 (130)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECS
T ss_pred             ecCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcEEeCc
Confidence            9999999999999999999999999999999999988776546677999998

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=4.4e-24  Score=173.31  Aligned_cols=110  Identities=19%  Similarity=0.296  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCC---CcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           44 RVICQGITGKN---GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        44 ~VaIvGasgk~---G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +|+|||+|.++   |+.++++|++.||+++ ||||+.  +++.|++||++++|+|+  +||++++++|++.+.+++++|+
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~~g~~V~-pVnP~~--~~i~G~~~y~sl~~lp~--~~D~vvi~vp~~~~~~~l~~~~   77 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLSKGFEVL-PVNPNY--DEIEGLKCYRSVRELPK--DVDVIVFVVPPKVGLQVAKEAV   77 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCEEE-EECTTC--SEETTEECBSSGGGSCT--TCCEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHHCCCEEE-EEcccc--ccccCccccccchhccc--cceEEEEEeCHHHHHHHHHHHH
Confidence            47789999654   5677889999999866 999998  89999999999999998  8999999999999999999999


Q ss_pred             HcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101          121 EAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus       121 ~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      +.|++.+| +++|...++   +.+.+ +++|++++||||+|+-
T Consensus        78 ~~g~k~v~-~~~g~~~~~---~~~~a-~~~gi~vigpnC~~ve  115 (116)
T d1y81a1          78 EAGFKKLW-FQPGAESEE---IRRFL-EKAGVEYSFGRCIMVE  115 (116)
T ss_dssp             HTTCCEEE-ECTTSCCHH---HHHHH-HHHTCEEECSCCHHHH
T ss_pred             hcCCceEE-eccchhhHH---HHHHH-HHcCCEEEcCCCCCEe
Confidence            99999977 677764444   34555 7889999999999874

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=8.2e-23  Score=170.76  Aligned_cols=119  Identities=16%  Similarity=0.229  Sum_probs=98.6

Q ss_pred             ccccc-CCCCeEEEEEcCCCC---CCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVF-VDKNTRVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll-~~k~~~VaIvGasgk---~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |.++| .+|+  |+|||||.+   +|+.++++|++.||+++ ||||++  +++.|.|||++++|+++  .+|++++++|+
T Consensus        12 i~~~L~~~ks--IAVVGaS~~~~~~g~~v~~~L~~~g~~v~-pVnP~~--~~i~G~~~~~sl~dlp~--~iD~v~i~vp~   84 (139)
T d2d59a1          12 IREILTRYKK--IALVGASPKPERDANIVMKYLLEHGYDVY-PVNPKY--EEVLGRKCYPSVLDIPD--KIEVVDLFVKP   84 (139)
T ss_dssp             HHHHHHHCCE--EEEETCCSCTTSHHHHHHHHHHHTTCEEE-EECTTC--SEETTEECBSSGGGCSS--CCSEEEECSCH
T ss_pred             HHHHHhcCCe--EEEEeecCCCCCchHHHHHHHHHCCCEEE-EECCcc--cccCCCcccccccccCc--cceEEEEEeCH
Confidence            67777 5666  567999964   56677889999999876 999998  89999999999999998  89999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      +.+++++++|+++|++.+|+.+.+++| +.   .+.+ +++|++++||||+.+..
T Consensus        85 ~~~~~~~~e~~~~g~k~v~~~~G~~~e-e~---~~~a-~~~gi~vig~~C~~v~~  134 (139)
T d2d59a1          85 KLTMEYVEQAIKKGAKVVWFQYNTYNR-EA---SKKA-DEAGLIIVANRCMMREH  134 (139)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECTTCCCH-HH---HHHH-HHTTCEEEESCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEeccccCH-HH---HHHH-HHCCCEEEcCCcChhhh
Confidence            999999999999999998754444543 33   3344 68899999999987654

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=4.4e-22  Score=159.78  Aligned_cols=119  Identities=64%  Similarity=1.055  Sum_probs=113.8

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|.+|+.||+|.|.+|+.|+.+.+.+++||.+++++|+|...|+++.|+|+|++++|..+++++|..++|+||..+.+.+
T Consensus         1 Ili~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~   80 (119)
T d2nu7a1           1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI   80 (119)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred             CeecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      .||++.|++.++++|+|.+..|+.++.+.+ ++.+.+++|
T Consensus        81 ~EAi~agI~~iV~ITEgIP~~D~~~i~~~~-~~~~~~liG  119 (119)
T d2nu7a1          81 LEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIG  119 (119)
T ss_dssp             HHHHHTTCSEEEECCCCCCHHHHHHHHHHH-HHHTCEEEC
T ss_pred             HHHHHCCCCEEEEecCCCCHHHHHHHHHHH-hhCCCEEeC
Confidence            999999999999999999999999998888 788999987

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=5.7e-22  Score=159.55  Aligned_cols=119  Identities=54%  Similarity=0.871  Sum_probs=113.5

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +|.+|+.||+|.|.+|+.|+.+.+.+++||.+++++|+|...|+++.|+|+|++++|..+++++|+.++|+||..+.+++
T Consensus         2 ili~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi   81 (121)
T d1oi7a1           2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA   81 (121)
T ss_dssp             CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred             EEecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      .||+++|++.++++|+|.+..|+.++.+.+ ++.+.+++|
T Consensus        82 ~EAi~agI~liv~ITEgVPv~Dm~~i~~~~-~~~~~~liG  120 (121)
T d1oi7a1          82 LEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIG  120 (121)
T ss_dssp             HHHHHTTCSEEEECCSCCCHHHHHHHHHHH-HHHTCEEEE
T ss_pred             HHHHhCCCcEEEEecCCCCHHHHHHHHHHH-HhCCCEEeC
Confidence            999999999999999999999999988888 678899997

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=5.1e-22  Score=165.30  Aligned_cols=122  Identities=19%  Similarity=0.297  Sum_probs=103.7

Q ss_pred             ccccc-CCCCeEEEEEcCCCC---CCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           34 APAVF-VDKNTRVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        34 l~~ll-~~k~~~VaIvGasgk---~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      |..+| .||+  |+|||||.+   +|+.++++|++.||+++ +|||+..++++.|.++|++++|+++  .+|++++++|+
T Consensus         6 i~~~L~~pks--IAVVGaS~~~~k~g~~v~~~L~~~g~~~~-~v~~~~~~~~i~g~~~~~~l~~i~~--~iD~v~v~~p~   80 (136)
T d1iuka_           6 LRAYLSQAKT--IAVLGAHKDPSRPAHYVPRYLREQGYRVL-PVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPP   80 (136)
T ss_dssp             HHHHHHHCCE--EEEETCCSSTTSHHHHHHHHHHHTTCEEE-EECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCH
T ss_pred             HHHHHhCCCe--EEEEeecCCCCCchHHHHHHHhcCCCCce-EEEeccccceeeceecccchhhccC--CCceEEEeccH
Confidence            66766 6776  567999965   45667788999999876 9998876689999999999999998  89999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcccC
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP  165 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p  165 (331)
                      +.+.+++++|+++|++.+| +++|+.+++.   .++| +++|+++++|||+++-.+
T Consensus        81 ~~v~~~v~~~~~~g~k~i~-~q~G~~~~e~---~~~a-~~~Gi~vV~~~C~~ie~~  131 (136)
T d1iuka_          81 SALMDHLPEVLALRPGLVW-LQSGIRHPEF---EKAL-KEAGIPVVADRCLMVEHK  131 (136)
T ss_dssp             HHHTTTHHHHHHHCCSCEE-ECTTCCCHHH---HHHH-HHTTCCEEESCCHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCeEE-EecCccCHHH---HHHH-HHcCCEEEcCCccHHHHH
Confidence            9999999999999999976 7999866654   4455 789999999999987553

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=4.3e-14  Score=120.11  Aligned_cols=119  Identities=16%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCC---Cc--------eecCcccccCHHHhhhcCCCCEEEEec
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---GT--------EHLGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~---g~--------~i~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ++.+||+|+||+||||+.+.+.+.+. ++++++.++++..   |+        ...+++++.+++++.+  ++|++|+|+
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~--~~DViIDFs   79 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFT   79 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhc--ccceEEEec
Confidence            56899999999999999999988775 8898888875431   11        1246678888888877  799999999


Q ss_pred             ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCC-CCcc
Q 020101          108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI  163 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc-~Gi~  163 (331)
                      .|+.+.+.++.|.+.|++. |+.|+||++++..+|.+.+ ++-. -++.||. +|+.
T Consensus        80 ~p~~~~~~~~~a~~~~~~~-ViGTTG~~~~~~~~i~~~a-~~ip-i~~apN~SlGi~  133 (162)
T d1diha1          80 RPEGTLNHLAFCRQHGKGM-VIGTTGFDEAGKQAIRDAA-ADIA-IVFAANFSMTFA  133 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCEE-EECCCCCCHHHHHHHHHHT-TTSC-EEECSCCCHHHH
T ss_pred             cHHHHHHHHHHHHhcccee-EEecCCCcHHHHHHHHHHc-CCCC-EEEEccccHHHH
Confidence            9999999999999999987 6699999999888888776 4544 3778885 6653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=1.6e-12  Score=107.05  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHHH-cCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           44 RVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~-~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      ||+|+|++||||+.+.+.+.+ .++++++.+|++.            ++..+.. .++|++|+|+.|+.+.+.++.|.++
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~------------~~~~~~~-~~~DvvIDFS~p~~~~~~~~~~~~~   67 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD------------PLSLLTD-GNTEVVIDFTHPDVVMGNLEFLIDN   67 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC------------CTHHHHT-TTCSEEEECCCTTTHHHHHHHHHHT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC------------chhhhcc-ccCCEEEEcccHHHHHHHHHHHHhc
Confidence            689999999999999998776 4899999998753            1223322 3789999999999999999999999


Q ss_pred             CCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC-CCc
Q 020101          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGV  162 (331)
Q Consensus       123 Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc-~Gi  162 (331)
                      |++. |+.|+||++++.++|.+.+.+..++. ++.||. +|+
T Consensus        68 ~~~~-ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGv  108 (135)
T d1yl7a1          68 GIHA-VVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFV  108 (135)
T ss_dssp             TCEE-EECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGH
T ss_pred             CCCE-EEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHH
Confidence            9997 66999999999888887543566675 778886 453

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=7.5e-12  Score=101.98  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      +||+|+|++||||+.+.+.+.+.++++++.++++.  .+.            .+  ++|++|+|+.|+.+.+.++.|.++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~--~~~------------~~--~~DVvIDFS~p~~~~~~l~~~~~~   64 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--VEE------------LD--SPDVVIDFSSPEALPKTVDLCKKY   64 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--EEE------------CS--CCSEEEECSCGGGHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc--HHH------------hc--cCCEEEEecCHHHHHHHHHHHHhc
Confidence            47899999999999999988888999998888654  211            12  689999999999999999999999


Q ss_pred             CCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEccCC
Q 020101          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC  159 (331)
Q Consensus       123 Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viGPnc  159 (331)
                      +++. |+.|+|+++++.+++.+++ ++  ++ +..||+
T Consensus        65 ~~p~-ViGTTG~~~~~~~~i~~~a-k~--~pv~~a~N~   98 (128)
T d1vm6a3          65 RAGL-VLGTTALKEEHLQMLRELS-KE--VPVVQAYSR   98 (128)
T ss_dssp             TCEE-EECCCSCCHHHHHHHHHHT-TT--SEEEECSCT
T ss_pred             CCCE-EEEcCCCCHHHHHHHHHHH-hh--CCEEeeecc
Confidence            9986 7799999999988888775 33  45 457775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.02  E-value=1.8e-10  Score=93.29  Aligned_cols=92  Identities=14%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHH-cCCeEEEEe--CCCCCCceecCccccc--CHHHhhhcCCCCEEEEecChhhHHH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGV--TPKKGGTEHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~-~g~~iv~~V--nP~~~g~~i~G~p~y~--sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +|+++|+|+|| |+.|+.+++.+.. .+|++++.+  ||+..|..+.|+|+|.  .++++.+ ..++++++++|.+..++
T Consensus         1 ~~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~-~~i~iai~~i~~~~~~~   78 (126)
T d2dt5a2           1 NRKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVP-GRIEIALLTVPREAAQK   78 (126)
T ss_dssp             TSCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHST-TTCCEEEECSCHHHHHH
T ss_pred             CCCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHh-hcccEEEEeCCHHHHHH
Confidence            46789999999 9999999887653 489999876  5777788999999994  3555444 36999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCC
Q 020101          115 AILEAMEAELDLVVCITEG  133 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G  133 (331)
                      +++.|.+.||+.++.|+++
T Consensus        79 I~d~l~~~gIk~I~~f~~~   97 (126)
T d2dt5a2          79 AADLLVAAGIKGILNFAPV   97 (126)
T ss_dssp             HHHHHHHHTCCEEEECSSS
T ss_pred             HHHHHHHcCCCEEeecCce
Confidence            9999999999999999875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=1.2e-09  Score=93.02  Aligned_cols=109  Identities=7%  Similarity=0.064  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCC-c---eecC----cccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLG----LPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G----~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +||+|||+ |++|+.+++.+... ++++++.++++... +   +..+    ..+|.+++++.++.++|++++++|+..+.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence            78999999 99999999988875 78999888876421 0   1223    45799999998877899999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcEE
Q 020101          114 AAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTRL  154 (331)
Q Consensus       114 ~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~v  154 (331)
                      +.+.+|+++|++. ++=-+ ..+.++..+|.+.+ +++++.+
T Consensus        81 ~~~~~~l~~g~~v-~~EKP~~~~~~e~~~l~~~~-~~~~~~~  120 (184)
T d1ydwa1          81 EWAIKAAEKGKHI-LLEKPVAMNVTEFDKIVDAC-EANGVQI  120 (184)
T ss_dssp             HHHHHHHTTTCEE-EECSSCSSSHHHHHHHHHHH-HTTTCCE
T ss_pred             chhhhhhhcccee-ecccccccCHHHHHHHHHHH-HhhCCEE
Confidence            9999999999875 44233 35667888898888 7777664

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.4e-09  Score=90.89  Aligned_cols=109  Identities=14%  Similarity=0.154  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCCc----eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHH
Q 020101           43 TRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI  116 (331)
Q Consensus        43 ~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g~----~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v  116 (331)
                      +||+|||+ |++|+. +.+.+... ++++++.+||+....    +-.+++.|++++++.+  ++|++++++|+..+.+.+
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~D~V~I~tp~~~h~~~~   78 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHSSTASHFDVV   78 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECSCTTHHHHHH
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhh--hcccccccccchhccccc
Confidence            68999998 999975 56777765 789998889876321    1458899999999986  799999999999999999


Q ss_pred             HHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEc
Q 020101          117 LEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      ..|+++|.+. ++=-| ..+.++..+|.+++ +++|+. .+|
T Consensus        79 ~~al~~gk~V-~~EKPla~~~~e~~~l~~~a-~~~~~~~~v~  118 (164)
T d1tlta1          79 STLLNAGVHV-CVDKPLAENLRDAERLVELA-ARKKLTLMVG  118 (164)
T ss_dssp             HHHHHTTCEE-EEESSSCSSHHHHHHHHHHH-HHTTCCEEEE
T ss_pred             ccccccccee-eccccccCCHHHHHHHHHHH-HHcCCcEEEE
Confidence            9999999775 44222 45567888888887 677754 444

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.97  E-value=2.7e-10  Score=96.34  Aligned_cols=109  Identities=10%  Similarity=0.001  Sum_probs=82.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +++||+|+|+ |++|+.+++.+.+. ++++++.++++.......+...+.+++++.+  ++|++++++|+..+.+.+..|
T Consensus         2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvi~tp~~~h~~~a~~a   78 (170)
T d1f06a1           2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAPK   78 (170)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHHH
T ss_pred             CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhcc--ccceEEEeCCCcccHHHHHHH
Confidence            4689999999 99999999999885 7899988887763234456666677777766  799999999999999999999


Q ss_pred             HHcCCcEEEEecCCCC--hhHHHHHHHHHhccCCcEE
Q 020101          120 MEAELDLVVCITEGIP--QHDMVRVKAALNNQSKTRL  154 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G~~--e~~~~~l~~~a~~~~gi~v  154 (331)
                      +++|++.+.+ .....  .++.++|.++| +++|..+
T Consensus        79 L~aG~~vv~~-~~~~~~~~~~~~~l~~~A-~~~~~~~  113 (170)
T d1f06a1          79 FAQFACTVDT-YDNHRDIPRHRQVMNEAA-TAAGNVA  113 (170)
T ss_dssp             HTTTSEEECC-CCCGGGHHHHHHHHHHHH-HHHTCEE
T ss_pred             HHCCCcEEEe-cCccccCHHHHHHHHHHH-HhcCceE
Confidence            9999997432 22222  24456777776 6666553

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=1.1e-09  Score=93.14  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCCCcH-HHHHHHHc--CCeEEEEeCCCCCC-c---eecCc-ccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           41 KNTRVICQGITGKNGTF-HTEQAIEY--GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~-~~~~l~~~--g~~iv~~VnP~~~g-~---~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      |.+||+|||+ |.+|+. +++.+.+.  .+++++.+|+.... +   +..+. .+|.+++|+.++.++|+++++||++.+
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence            5689999999 888875 67888774  36899888886521 1   12344 589999999987789999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          113 AAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      .+.+++|+++|.+. ++=-| +.+.++..+|.+.+ ++++.. .+|-|
T Consensus        81 ~~~~~~al~~gk~V-~~EKPl~~~~~e~~~l~~~~-~~~~~~~~v~~~  126 (181)
T d1zh8a1          81 LPFIEKALRKGVHV-ICEKPISTDVETGKKVVELS-EKSEKTVYIAEN  126 (181)
T ss_dssp             HHHHHHHHHTTCEE-EEESSSSSSHHHHHHHHHHH-HHCSSCEEEECG
T ss_pred             ccccccccccchhh-hcCCCCcCCHHHHHHHHHHH-HHhCCeEEEEee
Confidence            99999999999775 44233 45677888898888 677755 45433

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=98.84  E-value=1.3e-08  Score=90.11  Aligned_cols=125  Identities=10%  Similarity=0.044  Sum_probs=89.7

Q ss_pred             CcccccCCCCeEEEEEcCCCCCC----cHHHHHHHHc--CCeEEEEeCCCCCC-c---e---ecCcccccCHHHhhhcCC
Q 020101           33 PAPAVFVDKNTRVICQGITGKNG----TFHTEQAIEY--GTKMVGGVTPKKGG-T---E---HLGLPVFNTVAEAKAETK   99 (331)
Q Consensus        33 ~l~~ll~~k~~~VaIvGasgk~G----~~~~~~l~~~--g~~iv~~VnP~~~g-~---~---i~G~p~y~sl~dl~~~~~   99 (331)
                      ++..+-..|.+||+|||+ |..|    +.++..+.+.  ++++++.+||+... +   +   +.....|.+++++.++++
T Consensus         7 ~~~~~~~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   85 (237)
T d2nvwa1           7 KLSTVPSSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKD   85 (237)
T ss_dssp             GGGSSGGGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTT
T ss_pred             ccccCCCCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccc
Confidence            345555678899999999 5443    4456667653  68999888987521 0   1   234567899999988778


Q ss_pred             CCEEEEecChhhHHHHHHHHHHcCC-----cEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          100 ANASAIYVPPPFAAAAILEAMEAEL-----DLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       100 iDlaii~vp~~~~~~~v~~~~~~Gi-----~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      +|+++++||+..+.+.+..|+++|+     +.+++=-| +.+.++..++.+.++++.++. .+|-|
T Consensus        86 iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~  151 (237)
T d2nvwa1          86 IDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQ  151 (237)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECG
T ss_pred             cceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEEC
Confidence            9999999999999999999999996     56565333 456678888888773344555 35543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.84  E-value=3.8e-09  Score=92.91  Aligned_cols=120  Identities=15%  Similarity=0.201  Sum_probs=88.8

Q ss_pred             cccCCCCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC-c---eecC-----cccccCHHHhhhcCCCCEEE
Q 020101           36 AVFVDKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-T---EHLG-----LPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G-----~p~y~sl~dl~~~~~iDlai  104 (331)
                      .+..++.++|+|||+ |++|+. +++.+... ++++++.+|++... +   +-.|     +..|.+++++.++.++|+++
T Consensus        27 ~~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~  105 (221)
T d1h6da1          27 PMPEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVY  105 (221)
T ss_dssp             CCCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             CCCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeee
Confidence            344568899999999 888864 55666654 78999898986421 1   1123     34688999998877899999


Q ss_pred             EecChhhHHHHHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEccC
Q 020101          105 IYVPPPFAAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVGPN  158 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viGPn  158 (331)
                      |+||+..+.+.+.+|+++|++. ++=-+ ..+.++..+|.+.+ +++++. .+|-+
T Consensus       106 I~tp~~~H~~~~~~al~~gk~v-~~EKPla~~~~e~~~l~~~a-~~~~~~~~v~~~  159 (221)
T d1h6da1         106 IILPNSLHAEFAIRAFKAGKHV-MCEKPMATSVADCQRMIDAA-KAANKKLMIGYR  159 (221)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEE-EECSSCCSSHHHHHHHHHHH-HHHTCCEEECCG
T ss_pred             eccchhhhhhHHHHhhhcchhh-hcCCCccCCHHHHHHHHHHH-HhcCCcEEEeec
Confidence            9999999999999999999876 33222 45677888888888 666654 45544

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=8.7e-09  Score=86.70  Aligned_cols=113  Identities=10%  Similarity=0.038  Sum_probs=82.4

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ..+.++|+|||+ |.+|+.+++.+.+.    .+.++...+++.. ....+.+ +.+++|+.+++++|+++++||++.+.+
T Consensus         4 ~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H~~   80 (172)
T d1lc0a1           4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVR-QISLEDALRSQEIDVAYICSESSSHED   80 (172)
T ss_dssp             CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH
T ss_pred             CCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHHH-HHhhccC-cCCHHHHHhCCCcchhhhccccccccc
Confidence            467789999999 99999988876653    2345534444431 2334444 457999988778999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecC-CCChhHHHHHHHHHhccCCcE-EEc
Q 020101          115 AILEAMEAELDLVVCITE-GIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~-G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      .+.+|+++|.+. ++=-| ..+.++..+|.+.+ +++|.. .+|
T Consensus        81 ~~~~al~~gk~V-~~EKP~a~~~~e~~~l~~~a-~~~~~~~~v~  122 (172)
T d1lc0a1          81 YIRQFLQAGKHV-LVEYPMTLSFAAAQELWELA-AQKGRVLHEE  122 (172)
T ss_dssp             HHHHHHHTTCEE-EEESCSCSCHHHHHHHHHHH-HHTTCCEEEE
T ss_pred             ccccccccchhh-hcCCCccccHHHHHHHHHHH-HHcCCeEEEe
Confidence            999999999774 44233 45667888888887 677754 444

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.78  E-value=1.2e-08  Score=85.40  Aligned_cols=111  Identities=8%  Similarity=0.033  Sum_probs=82.3

Q ss_pred             CeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCC-c---eecCc-ccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           42 NTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGG-T---EHLGL-PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g-~---~i~G~-p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      ++||+|||+ |++|+. +.+.+.+. +++++ .++++... +   +.++. +.|.+++++.++ ++|++++++|+..+.+
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~iD~V~I~tp~~~H~~   77 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQY-GVDAVMIHAATDVHST   77 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGGG-CCSEEEECSCGGGHHH
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHhcccccccccHHHhccc-ccceeccccccccccc
Confidence            478999999 888864 66777665 56665 78876421 1   12454 478999998864 7999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcE-EEc
Q 020101          115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVG  156 (331)
Q Consensus       115 ~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~-viG  156 (331)
                      .+.+|+++|.+.++=-.-+.+.++..+|.+.+ +++|.. .+|
T Consensus        78 ~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a-~~~~~~~~vg  119 (167)
T d1xeaa1          78 LAAFFLHLGIPTFVDKPLAASAQECENLYELA-EKHHQPLYVG  119 (167)
T ss_dssp             HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHH-HHTTCCEEEE
T ss_pred             ccccccccccccccCCCCcCCHHHHHHHHHHH-HHcCCEEEEE
Confidence            99999999988533222256677888898887 677765 445

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.16  E-value=6.6e-06  Score=67.82  Aligned_cols=108  Identities=13%  Similarity=0.168  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH--
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL--  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~--  117 (331)
                      +||.|||. |+||+.++++|.+.||+++ ..|.+....   .-.+.....+.+|+.+  +.|++++++|.....+.+-  
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~d~ii~~v~~~~~v~~v~~~   76 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLPNSPHVKEVALG   76 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCCeEE-EEeCCcchhHHHHHhhhhhcccHHHHHh--CCCeEEEEcCCHHHHHHHHhC
Confidence            46899999 9999999999999999976 666654101   1257778889999988  7999999998655444432  


Q ss_pred             --HHHH-cCC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          118 --EAME-AEL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       118 --~~~~-~Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                        .+.. ... +.++..++ .+.+...++.+.+ ++.|+.++.
T Consensus        77 ~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~-~~~g~~~vd  117 (161)
T d1vpda2          77 ENGIIEGAKPGTVLIDMSS-IAPLASREISDAL-KAKGVEMLD  117 (161)
T ss_dssp             TTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHH-HTTTCEEEE
T ss_pred             CcchhhccCCCCEEEECCC-CCHHHHHHHHHHH-HHcCCceec
Confidence              2332 222 33343444 4456666777766 677888775

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.15  E-value=3.3e-06  Score=68.99  Aligned_cols=103  Identities=15%  Similarity=0.072  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +||+|||. |+||+.+.++|.+.|++++ ..|.......   -.+..+-.+.+|+..  ..|++++++|++.+.+++.++
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~diIi~~v~~~~~~~~~~~~   76 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVTETSEEDVY--SCPVVISAVTPGVALGAARRA   76 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCEEE-ECCTTCCHHHHHHHHHHTCEECCHHHHH--TSSEEEECSCGGGHHHHHHHH
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCCeEE-EEcCchhHHHHHhhhcccccccHHHHHh--hcCeEEEEecCchHHHHHHhh
Confidence            47899999 9999999999999999977 6665542111   235556678888887  799999999999999999887


Q ss_pred             HHcCCcEEEEecCCCChhHHHHHHHHHhccCC
Q 020101          120 MEAELDLVVCITEGIPQHDMVRVKAALNNQSK  151 (331)
Q Consensus       120 ~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~g  151 (331)
                      ...-=+. ++-.+-.+.+..+++.+.+ ++.+
T Consensus        77 ~~~~~~~-~id~st~~p~~~~~l~~~~-~~~~  106 (152)
T d1i36a2          77 GRHVRGI-YVDINNISPETVRMASSLI-EKGG  106 (152)
T ss_dssp             HTTCCSE-EEECSCCCHHHHHHHHHHC-SSSE
T ss_pred             cccCCce-eeccCcCCHHHHHHHHHHH-hccC
Confidence            7654344 4434444455556676665 4443

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.11  E-value=2.8e-05  Score=64.00  Aligned_cols=125  Identities=18%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             CEEEEecChHHHHHHHHHHHhCCCCceE---------------EEecCCCCC-----CCCCHHHHHHHhhcCCCccEEEE
Q 020101          182 RIGIVSRSGTLTYEAVFQTTAVGLGQST---------------CVGIGGDPF-----NGTNFVDCVTKFIADPQTEGIIL  241 (331)
Q Consensus       182 ~valisQSG~~~~~~~~~~~~~g~g~s~---------------~vs~Gn~~~-----~~v~~~d~l~~l~~Dp~T~~I~l  241 (331)
                      +|++||-||+.+..+.+.+.+.|+-+..               +.+..|-.|     ..-.+.+.++-+.+||++..|++
T Consensus         5 rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~~vd~v~v   84 (163)
T d2csua3           5 KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIA   84 (163)
T ss_dssp             EEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEE
T ss_pred             eEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCCCcCEEEE
Confidence            4999999999999999999988876532               234444320     11237788899999999998876


Q ss_pred             EEcc--C-CC-cHHHHHHHHHHhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHh
Q 020101          242 IGEI--G-GT-AEEDAAALIKESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPA  314 (331)
Q Consensus       242 y~E~--~-g~-~~~~~~~f~~a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~  314 (331)
                      ++-.  . +. ........+++++   .+|||++...|-..                   .....+.|+++|+..-++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~-------------------~~~~~~~l~~~Gip~f~~pe  145 (163)
T d2csua3          85 ICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV-------------------SEKAKELLEKNGIPTYERPE  145 (163)
T ss_dssp             EEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT-------------------THHHHHHHHTTTCCEESSHH
T ss_pred             eeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCC-------------------hHHHHHHHHHCCCCcCCCHH
Confidence            5532  1 11 1233444555443   67999876554211                   23457789999999999999


Q ss_pred             HHHHHHHHHHH
Q 020101          315 KIGAAMLEVFK  325 (331)
Q Consensus       315 el~~~~~a~~~  325 (331)
                      +-..++.++++
T Consensus       146 ~a~~Al~~l~~  156 (163)
T d2csua3         146 DVASAAYALVE  156 (163)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.92  E-value=1.3e-05  Score=65.86  Aligned_cols=88  Identities=10%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c--eecC-cc-cccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLG-LP-VFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~--~i~G-~p-~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      +||+|||+ |+||..+++.|.+.|++++ +.|++... +  .-.| +. ....++.+ +  +.|++++++|++...++++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~-~~d~~~~~~~~a~~~~~~~~~~~~~~~~-~--~~DiIilavp~~~~~~vl~   75 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLL-Q--TAKIIFLCTPIQLILPTLE   75 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGG-T--TCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCchHHHHHHHhhccceeeeecccc-c--ccccccccCcHhhhhhhhh
Confidence            47899999 9999999999999999987 77876410 0  0123 22 23345444 4  6899999999999999999


Q ss_pred             HHHHc-CCcEEEEecCCCC
Q 020101          118 EAMEA-ELDLVVCITEGIP  135 (331)
Q Consensus       118 ~~~~~-Gi~~ivi~t~G~~  135 (331)
                      +.... .-+.+++-..+..
T Consensus        76 ~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          76 KLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             HHGGGSCTTCEEEECCSCC
T ss_pred             hhhhhcccccceeeccccc
Confidence            98775 3444443333343

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.92  E-value=4.4e-05  Score=62.78  Aligned_cols=109  Identities=11%  Similarity=0.128  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE-  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~-  118 (331)
                      .+|.+||. |+||..++++|.+.||++. ..|.+....   ...|.....++.|+..  ..|++++++|...+.+.+.. 
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~--~~diii~~v~~~~~~~~v~~~   77 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQ--GADVVISMLPASQHVEGLYLD   77 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHT--SCSEEEECCSCHHHHHHHHHS
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCCeEE-EEECchhhhhhhhhhhccccchhhhhcc--ccCeeeecccchhhHHHHHhc
Confidence            46899999 9999999999999999976 666554101   1346667778888887  78999999998877665432 


Q ss_pred             ---HHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          119 ---AME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       119 ---~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                         ... ..-..+|+-.+-.+.+...++.+.+ ++.|+.++.
T Consensus        78 ~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~-~~~gi~~~d  118 (162)
T d3cuma2          78 DDGLLAHIAPGTLVLECSTIAPTSARKIHAAA-RERGLAMLD  118 (162)
T ss_dssp             TTCHHHHSCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             cccccccCCCCCEEEECCCCCHHHHHHHHHHH-HHCCCcEEe
Confidence               222 2223344434444566666777776 678888774

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.89  E-value=1e-05  Score=66.30  Aligned_cols=92  Identities=11%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      +||++||+ |+||+.+++.|.+.+++++ ..+++... +   +..|+....+.+++.+  +.|+++++++|+.+.+++++
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~~i~-v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~~dvIilavkp~~~~~vl~~   76 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPHELI-ISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIKPQLFETVLKP   76 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSCEEE-EECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSCGGGHHHHHTT
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCCeEE-EEcChHHhHHhhccccceeeechhhhhhh--ccceeeeecchHhHHHHhhh
Confidence            47899999 9999999999998899866 55554311 1   1358888889999988  79999999999999888776


Q ss_pred             HHHcCCcEEEEecCCCChhHHH
Q 020101          119 AMEAELDLVVCITEGIPQHDMV  140 (331)
Q Consensus       119 ~~~~Gi~~ivi~t~G~~e~~~~  140 (331)
                      . ..+ +.++-+++|.+-+..+
T Consensus        77 l-~~~-~~iis~~agi~~~~l~   96 (152)
T d2ahra2          77 L-HFK-QPIISMAAGISLQRLA   96 (152)
T ss_dssp             S-CCC-SCEEECCTTCCHHHHH
T ss_pred             c-ccc-eeEecccccccHHHHH
Confidence            4 333 3456678898765544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.65  E-value=1.5e-05  Score=64.90  Aligned_cols=92  Identities=16%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-c---eecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL  117 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~  117 (331)
                      +||++||+ |+||+.+++.|.+.| ++++ ..|++... +   +..|+.++.+.+++.   +.|+++++++|+...++++
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~~~~~~l~~~~~~~~~~~~~~v~---~~Div~lavkP~~~~~v~~   75 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGVETSATLPELH---SDDVLILAVKPQDMEAACK   75 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCCEEESSCCCCC---TTSEEEECSCHHHHHHHHT
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCChhHHHHhhhhccccccccccccc---ccceEEEecCHHHHHHhHH
Confidence            47899999 999999999888776 6665 77776521 1   135788888877764   5799999999999888887


Q ss_pred             HHHHcCCcEEEEecCCCChhHHH
Q 020101          118 EAMEAELDLVVCITEGIPQHDMV  140 (331)
Q Consensus       118 ~~~~~Gi~~ivi~t~G~~e~~~~  140 (331)
                      +....+ +.++-+..|.+.+..+
T Consensus        76 ~l~~~~-~~viS~~ag~~~~~l~   97 (152)
T d1yqga2          76 NIRTNG-ALVLSVAAGLSVGTLS   97 (152)
T ss_dssp             TCCCTT-CEEEECCTTCCHHHHH
T ss_pred             HHhhcc-cEEeecccCCCHHHHH
Confidence            764333 4555567888765544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.64  E-value=4.9e-05  Score=64.07  Aligned_cols=83  Identities=18%  Similarity=0.194  Sum_probs=64.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce---------------------ecCcccccCHHHhhhcCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---------------------HLGLPVFNTVAEAKAETK   99 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~---------------------i~G~p~y~sl~dl~~~~~   99 (331)
                      .+||+|.|. |++|+.++|.+.+. ++++++..++......                     ..++++..++.++.+  +
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~--~   77 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--T   77 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--H
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh--c
Confidence            478999998 99999999998875 6889966665431010                     124556666777766  6


Q ss_pred             CCEEEEecChhhHHHHHHHHHHcCCcEE
Q 020101          100 ANASAIYVPPPFAAAAILEAMEAELDLV  127 (331)
Q Consensus       100 iDlaii~vp~~~~~~~v~~~~~~Gi~~i  127 (331)
                      +|+++.|||.-...+.++..++.|+|.+
T Consensus        78 vDiViecTG~f~~~e~a~~hl~~G~KvI  105 (178)
T d1b7go1          78 SDIVVDTTPNGVGAQYKPIYLQLQRNAI  105 (178)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECCCCcCCHHHHHHHHHcCCEEE
Confidence            9999999999999999999999997763

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.63  E-value=3.9e-05  Score=63.33  Aligned_cols=91  Identities=13%  Similarity=0.067  Sum_probs=61.4

Q ss_pred             CCCeEEEEEcCCCCCCcH-HHHHHHHc-CCeEEEEeCCCCCCc-----eecCccccc-CHHHhhh---cCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTF-HTEQAIEY-GTKMVGGVTPKKGGT-----EHLGLPVFN-TVAEAKA---ETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~-~~~~l~~~-g~~iv~~VnP~~~g~-----~i~G~p~y~-sl~dl~~---~~~iDlaii~vp  108 (331)
                      .+.+||+|||+ |++|+. +.+.+++. .+++++.++.+..+.     +-.|++.+. +++++.+   ..++|+++++||
T Consensus         2 ~kkirvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATp   80 (157)
T d1nvmb1           2 NQKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (157)
T ss_dssp             CSCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CCCcEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCC
Confidence            46799999995 999875 45666665 457887766544222     236777665 3555543   346999999999


Q ss_pred             hhhHHHH--HHHHHHcCCcEEEEecC
Q 020101          109 PPFAAAA--ILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~~~~~~~--v~~~~~~Gi~~ivi~t~  132 (331)
                      +..+.+.  +.++.++|+.. +-.++
T Consensus        81 ag~h~~~~~~~~aa~~G~~V-ID~s~  105 (157)
T d1nvmb1          81 ASAHVQNEALLRQAKPGIRL-IDLTP  105 (157)
T ss_dssp             HHHHHHHHHHHHHHCTTCEE-EECST
T ss_pred             chhHHHhHHHHHHHHcCCEE-EEccc
Confidence            9877664  45567888876 44443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.58  E-value=0.00022  Score=58.50  Aligned_cols=90  Identities=13%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--------Cce----------ecCcccccCHHHhhhcCCCCEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------GTE----------HLGLPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--------g~~----------i~G~p~y~sl~dl~~~~~iDla  103 (331)
                      +.+|+|+|+ |++|......|.+.|+++. .+++...        +..          .....+..+++|..+  +.|++
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~aD~i   76 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADVI   76 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSEE
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc--CCCEE
Confidence            357889999 9999999999999999866 6665420        000          011223456788776  79999


Q ss_pred             EEecChhhHHHHHHHHHHc-CCcEEEEecCCCC
Q 020101          104 AIYVPPPFAAAAILEAMEA-ELDLVVCITEGIP  135 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~-Gi~~ivi~t~G~~  135 (331)
                      ++++|+..+.++++++..+ .-+.+++++.|..
T Consensus        77 ii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          77 LIVVPAIHHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             EECSCGGGHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEEEchhHHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            9999999999999888764 2234455676654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=6e-05  Score=63.15  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=63.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce----e------------------cCcccccCHHHhhhcC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE----H------------------LGLPVFNTVAEAKAET   98 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~----i------------------~G~p~y~sl~dl~~~~   98 (331)
                      ++||+|.|. |++|+.+++.+.+. ++++++..++......    .                  .++++.-++.++.+  
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--   78 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc--
Confidence            478999999 99999999988775 6889866555432110    0                  13333345555554  


Q ss_pred             CCCEEEEecChhhHHHHHHHHHHcCCcEEE
Q 020101           99 KANASAIYVPPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus        99 ~iDlaii~vp~~~~~~~v~~~~~~Gi~~iv  128 (331)
                      ++|+++.|||.-...+.++..+++|+|.++
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence            799999999999999999999999999855

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.45  E-value=0.00027  Score=57.25  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce----ecCc-----ccc--cCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGL-----PVF--NTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~----i~G~-----p~y--~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +.+|+|+|| |.+|+.++++|.+.|++++ .+|.+... ++    ....     ...  ...++...  ..|+++.++|.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~-v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~   77 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPY   77 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEE-EEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECSCG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECChHHHHHHHhcccccccccccccchhhhHhhhh--ccceeEeeccc
Confidence            467899999 9999999999999999976 88876521 11    1111     111  12344444  68999999999


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ......+..+.+.+.+.   +......+...++.+.+ ++.+..++
T Consensus        78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-~~~~~~~~  119 (182)
T d1e5qa1          78 TFHATVIKSAIRQKKHV---VTTSYVSPAMMELDQAA-KDAGITVM  119 (182)
T ss_dssp             GGHHHHHHHHHHHTCEE---ECSSCCCHHHHHTHHHH-HHTTCEEE
T ss_pred             hhhhHHHHHHHhhccce---eecccCcHHHHHHHHHh-ccccceee
Confidence            99999999999998876   23444334455555555 45554444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.45  E-value=0.00032  Score=58.51  Aligned_cols=92  Identities=8%  Similarity=0.041  Sum_probs=64.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEe---CCCCCCceecC-ccc--------c---cCHHHhhhcCCCCEEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGV---TPKKGGTEHLG-LPV--------F---NTVAEAKAETKANASAI  105 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~V---nP~~~g~~i~G-~p~--------y---~sl~dl~~~~~iDlaii  105 (331)
                      ++||+|+||||-.|+.+++.|.++ .+++.+..   ..+..|+.+.. .|.        +   .+..+..  .++|+++.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dvvf~   78 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS--ADVDVVFL   78 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC--TTCCEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh--cccceeec
Confidence            478999999999999999999997 67776432   12223333211 011        1   1122222  27999999


Q ss_pred             ecChhhHHHHHHHHHHcCCcEEEEecCCCCh
Q 020101          106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQ  136 (331)
Q Consensus       106 ~vp~~~~~~~v~~~~~~Gi~~ivi~t~G~~e  136 (331)
                      ++|.....+.+..+.+.|++. +-.+..|..
T Consensus        79 alp~~~s~~~~~~~~~~~~~v-IDlSadfRl  108 (179)
T d2g17a1          79 ATAHEVSHDLAPQFLQAGCVV-FDLSGAFRV  108 (179)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEE-EECSSTTSS
T ss_pred             cccchhHHHHhhhhhhcCcee-ecccccccc
Confidence            999999999999999999886 657776653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.45  E-value=0.00016  Score=59.97  Aligned_cols=108  Identities=12%  Similarity=0.078  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e----------ecCcccccCHHHhhhcCCCCEEEEecChh-h
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E----------HLGLPVFNTVAEAKAETKANASAIYVPPP-F  111 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~----------i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~  111 (331)
                      +|.+||. |+||..++++|.+.||+++ +.|.+...- +          ..|.....++.+...  ..|.+++++|.. .
T Consensus         4 nIg~IGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~~   79 (176)
T d2pgda2           4 DIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQA   79 (176)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTHH
T ss_pred             cEEEEeE-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchHH
Confidence            5788999 9999999999999999976 666654100 1          012222334444444  689999888774 4


Q ss_pred             HHHHHHHHHHcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          112 AAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       112 ~~~~v~~~~~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      +.++...+...- ...+|+-.+-...++..++.+.+ ++.|++++.
T Consensus        80 v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~-~~~g~~~ld  124 (176)
T d2pgda2          80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDL-KDKGILFVG  124 (176)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHH-HHTTCEEEE
T ss_pred             HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHH-HhcCCceec
Confidence            566666665532 22344434444455556666666 677888774

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.0004  Score=55.80  Aligned_cols=93  Identities=11%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHH
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE  118 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~  118 (331)
                      .+...+|+|||+.|.||+...++|.+.||++. ..|...  .        .+.++..+  ..|.+++++|.....+++.+
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d~~~--~--------~~~~~~~~--~~~~v~~~~~~~~~~~v~~~   72 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRED--W--------AVAESILA--NADVVIVSVPINLTLETIER   72 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTC--G--------GGHHHHHT--TCSEEEECSCGGGHHHHHHH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcE-eccccc--c--------cccchhhh--hccccccccchhhheeeeec
Confidence            35567789999559999999999999999876 777654  1        22344444  78999999999999999999


Q ss_pred             HHHcC-CcEEEEecCCCChhHHHHHHH
Q 020101          119 AMEAE-LDLVVCITEGIPQHDMVRVKA  144 (331)
Q Consensus       119 ~~~~G-i~~ivi~t~G~~e~~~~~l~~  144 (331)
                      ....- -..+|+-.+....+..+++.+
T Consensus        73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~   99 (152)
T d2pv7a2          73 LKPYLTENMLLADLTSVKREPLAKMLE   99 (152)
T ss_dssp             HGGGCCTTSEEEECCSCCHHHHHHHHH
T ss_pred             ccccccCCceEEEecccCHHHHHHHHH
Confidence            88763 344555445555555555543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.38  E-value=0.00016  Score=61.17  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=64.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC---------------CCCC-C-ceecCcccccCHHHhhhcCCCCEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT---------------PKKG-G-TEHLGLPVFNTVAEAKAETKANASA  104 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn---------------P~~~-g-~~i~G~p~y~sl~dl~~~~~iDlai  104 (331)
                      ..||+|+|+ |.+|.++...|.+.|.++. ...               |.+- + .-...+.+..+++++.+  +.|+++
T Consensus         7 m~KI~ViGa-G~wGtAlA~~La~~g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~--~ad~ii   82 (189)
T d1n1ea2           7 LNKAVVFGS-GAFGTALAMVLSKKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIIL   82 (189)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSCEE
T ss_pred             eceEEEECC-CHHHHHHHHHHHHcCCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccC--CCCEEE
Confidence            456899999 9999999999988877744 322               2210 0 00123445567888887  789999


Q ss_pred             EecChhhHHHHHHHHH--------HcCCcEEEEecCCCChhH
Q 020101          105 IYVPPPFAAAAILEAM--------EAELDLVVCITEGIPQHD  138 (331)
Q Consensus       105 i~vp~~~~~~~v~~~~--------~~Gi~~ivi~t~G~~e~~  138 (331)
                      +++|.....+++++..        ..+... +..+-|+..+.
T Consensus        83 iavPs~~~~~~~~~~~~~~~~~~~~~~~~i-i~~tKGie~~t  123 (189)
T d1n1ea2          83 FVIPTQFLRGFFEKSGGNLIAYAKEKQVPV-LVCTKGIERST  123 (189)
T ss_dssp             ECSCHHHHHHHHHHHCHHHHHHHHHHTCCE-EECCCSCCTTT
T ss_pred             EcCcHHHHHHHHHHHHhhhhhhhccCCcEE-EEEECCCccCC
Confidence            9999999998887753        445554 55788985443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00058  Score=55.38  Aligned_cols=90  Identities=10%  Similarity=-0.004  Sum_probs=58.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-C---CeEEEEeCCCCCCceec----Cccccc--CHHHhhhcCCCCEEEEecChhhH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-G---TKMVGGVTPKKGGTEHL----GLPVFN--TVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g---~~iv~~VnP~~~g~~i~----G~p~y~--sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      ++|+|+||||-.|+..++.|.+. .   .++++.-..+..|+.+.    ......  +.+++ .  ++|+++.++|.+.+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~-~--~~DivF~a~~~~~s   78 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL-K--ALDIIVTCQGGDYT   78 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH-H--TCSEEEECSCHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhh-h--cCcEEEEecCchHH
Confidence            47899999999999999876653 2   34553333333333221    112222  22232 2  69999999999999


Q ss_pred             HHHHHHHHHcCCcEEEE-ecCCCC
Q 020101          113 AAAILEAMEAELDLVVC-ITEGIP  135 (331)
Q Consensus       113 ~~~v~~~~~~Gi~~ivi-~t~G~~  135 (331)
                      .+.+.++.++|.+.+|+ .++-|.
T Consensus        79 ~~~~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          79 NEIYPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSTTT
T ss_pred             HHhhHHHHhcCCCeecccCCcccc
Confidence            99999999999885443 444453

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.0004  Score=55.95  Aligned_cols=92  Identities=10%  Similarity=0.066  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---e-------cCcccccCHHHhhhcCCCCEEEEecChhhH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---H-------LGLPVFNTVAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i-------~G~p~y~sl~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +||+|+|+ |.+|..+...|.+.|+++. .++.......   .       .......+..+...  .+|++++++++..+
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~iii~vka~~~   76 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQ-GWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLA--TSDLLLVTLKAWQV   76 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHH--TCSEEEECSCGGGH
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceE-EEEcCHHHhhhhccccCCccccccccccchhhhhc--ccceEEEeecccch
Confidence            47999999 9999999999999999876 5554431111   0       11122223334444  69999999999999


Q ss_pred             HHHHHHHHHcC--CcEEEEecCCCChhH
Q 020101          113 AAAILEAMEAE--LDLVVCITEGIPQHD  138 (331)
Q Consensus       113 ~~~v~~~~~~G--i~~ivi~t~G~~e~~  138 (331)
                      .++++.+...-  =..|+.++.|+..++
T Consensus        77 ~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          77 SDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             HHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             HHHHHhhccccCcccEEeeccCcccHHH
Confidence            99998887642  233566788986544

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.22  E-value=0.00055  Score=55.76  Aligned_cols=92  Identities=17%  Similarity=0.063  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCCCceec----CcccccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHL----GLPVFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~g~~i~----G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .||+|+||||=.|..+++.|.++.|   ++...-..+..|+.+.    ........++...  +.|++..++|+....+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~--~~d~~f~~~~~~~s~~~   79 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAKY   79 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhh--hhhhhhhccCccchhhH
Confidence            5799999999999999999988865   2433334444444331    1222223333333  78999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCChh
Q 020101          116 ILEAMEAELDLVVCITEGIPQH  137 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~e~  137 (331)
                      +.++.+.|++. |-.++-|..+
T Consensus        80 ~~~~~~~~~~V-IDlSsdfR~~  100 (154)
T d2gz1a1          80 APYAVKAGVVV-VDNTSYFRQN  100 (154)
T ss_dssp             HHHHHHTTCEE-EECSSTTTTC
T ss_pred             Hhhhcccccee-hhcChhhhcc
Confidence            99999999886 5577777543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.00044  Score=55.88  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=65.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCceec-Ccc--cccCHHHhhhcCCCCEEEEecChhhHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL-GLP--VFNTVAEAKAETKANASAIYVPPPFAAAA  115 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~i~-G~p--~y~sl~dl~~~~~iDlaii~vp~~~~~~~  115 (331)
                      .++|+|+||||-.|+.+++.|.+.   .+++...-..+..|+.+. ..+  .+.++++... .++|+++.++|.+...+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~-~~~d~vf~a~p~~~s~~~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDF-SSVGLAFFAAAAEVSRAH   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCG-GGCSEEEECSCHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhh-ccceEEEecCCcchhhhh
Confidence            478999999999999999988754   356775556666666542 111  1122322221 268999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCCC
Q 020101          116 ILEAMEAELDLVVCITEGIP  135 (331)
Q Consensus       116 v~~~~~~Gi~~ivi~t~G~~  135 (331)
                      +..+.++|++. +-.++-|.
T Consensus        81 ~~~~~~~g~~V-ID~Ss~fR   99 (144)
T d2hjsa1          81 AERARAAGCSV-IDLSGALE   99 (144)
T ss_dssp             HHHHHHTTCEE-EETTCTTT
T ss_pred             ccccccCCceE-Eeechhhc
Confidence            99999999875 55666664

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=0.00031  Score=57.00  Aligned_cols=107  Identities=10%  Similarity=-0.042  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--ceecCcccccCHHHhhhcCCCCEEEEecChhhH-HHHHHHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAILEAM  120 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~-~~~v~~~~  120 (331)
                      ||.+||. |+||..+.++|.+.|+.++  .|.....  +.........+..+...  +.|++++++|.... ......++
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~v~~~~~~l~   76 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTLV--WNRTFEKALRHQEEFGSEAVPLERVA--EARVIFTCLPTTREVYEVAEALY   76 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEEE--ECSSTHHHHHHHHHHCCEECCGGGGG--GCSEEEECCSSHHHHHHHHHHHT
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEEE--EeCCHHHHHHHHHHcCCccccccccc--ceeEEEecccchhhhhhhhcccc
Confidence            5789999 9999999999998888655  3333210  11111112222223333  47888888877544 44444444


Q ss_pred             HcC-CcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          121 EAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       121 ~~G-i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      ... -..+|+-.+-.+.+..+++.+.+ ++.|++++.
T Consensus        77 ~~~~~~~~iid~sT~~p~~~~~~~~~~-~~~gi~~ld  112 (156)
T d2cvza2          77 PYLREGTYWVDATSGEPEASRRLAERL-REKGVTYLD  112 (156)
T ss_dssp             TTCCTTEEEEECSCCCHHHHHHHHHHH-HTTTEEEEE
T ss_pred             ccccccccccccccCCHHHHHHHHHHH-HHcCCeEEe
Confidence            433 23444444445566777777777 688988874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00055  Score=57.52  Aligned_cols=89  Identities=19%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCC-ceecCcccc-------cCHHHhhhcCCCCEEEEecCh---
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-TEHLGLPVF-------NTVAEAKAETKANASAIYVPP---  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g-~~i~G~p~y-------~sl~dl~~~~~iDlaii~vp~---  109 (331)
                      ..||+|.||||..|+.+++.|++.|+++.+.+ ||.... ....++.++       .+++++..  ++|+++.++..   
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~~~~   80 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRND   80 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhc--CCCEEEEEeccCCc
Confidence            46789999999999999999999999987554 443210 111222222       23555555  78999987643   


Q ss_pred             --------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                              +.+..+++.+.++|++.++.+++
T Consensus        81 ~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence                    23456788888899998776654

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.0045  Score=50.03  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=88.1

Q ss_pred             CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHHH
Q 020101          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIK  258 (331)
Q Consensus       180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~~  258 (331)
                      .|+||++.--++++.+.++.....|--..-|.-+|+.+. .-.+.+.++.+..||++|+|++=+=++=.+ ..-++-+.+
T Consensus        18 dG~IG~i~NGAGlaMaTmD~i~~~Gg~pANFlDiGGga~-~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~GIv~   96 (148)
T d1eucb1          18 DGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVK-ESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITK   96 (148)
T ss_dssp             SCSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSSCC-HHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHHHHH
T ss_pred             cCcEEEEecCCccchhHHHHHHHcCCCeeeEEecCCCCC-HHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHHHHH
Confidence            499999999999999999999999999999999999862 345788899999999999998653332111 123334444


Q ss_pred             HhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCC--eEeCCHhHHHHHHHHHH
Q 020101          259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGV--TVVESPAKIGAAMLEVF  324 (331)
Q Consensus       259 a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv--~~v~~~~el~~~~~a~~  324 (331)
                      +.+   .++|||+=..|..+.                    .=...|+++|+  ..++|   |.++++...
T Consensus        97 A~~e~~~~iPiVVRL~Gtn~e--------------------eg~~iL~~sgl~i~~~~~---l~eAa~~aV  144 (148)
T d1eucb1          97 ACRELELKVPLVVRLEGTNVH--------------------EAQNILTNSGLPITSAVD---LEDAAKKAV  144 (148)
T ss_dssp             HHHHHTCCSCEEEEEESTTHH--------------------HHHHHHHTTCSSEEECSS---HHHHHHHHH
T ss_pred             HHHhcCCCccEEEEeccCChH--------------------HHHHHHHHCCCCeEEeCC---HHHHHHHHH
Confidence            544   789999988886443                    33677889995  34445   555555433

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.08  E-value=0.0006  Score=55.41  Aligned_cols=91  Identities=13%  Similarity=0.003  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-C---CeEEEEeCCCCCCceecC----cccccCHH-HhhhcCCCCEEEEecChhhHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-G---TKMVGGVTPKKGGTEHLG----LPVFNTVA-EAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g---~~iv~~VnP~~~g~~i~G----~p~y~sl~-dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +||+|+||||-.|+.+++.|.++ .   .+++..-..+..|+.+.-    ...+...+ +...  ++|+++.++|.+.+.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~--~~DvvF~alp~~~s~   78 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLK--QLDAVITCQGGSYTE   78 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHT--TCSEEEECSCHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhc--cccEEEEecCchHHH
Confidence            47999999999999999877653 2   456533333333333211    11221111 2233  799999999999999


Q ss_pred             HHHHHHHHcCCcE-EEEecCCCC
Q 020101          114 AAILEAMEAELDL-VVCITEGIP  135 (331)
Q Consensus       114 ~~v~~~~~~Gi~~-ivi~t~G~~  135 (331)
                      +.+.++.+.|.+. +|=.++-|.
T Consensus        79 ~~~~~l~~~g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          79 KVYPALRQAGWKGYWIDAASTLR  101 (147)
T ss_dssp             HHHHHHHHTTCCSEEEESSSTTT
T ss_pred             HHhHHHHHcCCceEEEeCCcccc
Confidence            9999999999984 344676664

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.0011  Score=55.26  Aligned_cols=90  Identities=10%  Similarity=-0.023  Sum_probs=63.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec-------C-ccc-ccCHHHhhhcCCCCEEEEecChhh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G-LPV-FNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~-------G-~p~-y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++||+|+||||-.|+.+++.|.++ .+++.....-+..|+.+.       + ... ..+.+++.+  ++|++..++|...
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~--~~dvvf~a~p~~~   78 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPAGA   78 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCSTTH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc--ccceEEEccccHH
Confidence            478999999999999999999887 567776655555454432       1 111 124566655  6999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCh
Q 020101          112 AAAAILEAMEAELDLVVCITEGIPQ  136 (331)
Q Consensus       112 ~~~~v~~~~~~Gi~~ivi~t~G~~e  136 (331)
                      ..+.+.+  .++++ +|-.++.|.-
T Consensus        79 s~~~~~~--~~~~~-VIDlSadfRl  100 (176)
T d1vkna1          79 SYDLVRE--LKGVK-IIDLGADFRF  100 (176)
T ss_dssp             HHHHHTT--CCSCE-EEESSSTTTC
T ss_pred             HHHHHHh--hccce-EEecCccccc
Confidence            8887765  35665 4667887763

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.96  E-value=0.00053  Score=57.27  Aligned_cols=118  Identities=22%  Similarity=0.332  Sum_probs=80.5

Q ss_pred             ccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC---ceecCcccccCHHHhhhcCCCCEEEEecChhhHH
Q 020101           37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        37 ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g---~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      ++.+  .+|+|||. |..|+.+..||++.|.+++-+.-|....   .+..|+.+++ ++|..+  ..|++.+.+|.+...
T Consensus        13 ~ik~--k~IaViGY-GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~-~~eA~~--~aDiim~L~PD~~q~   86 (182)
T d1np3a2          13 IIQG--KKVAIIGY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVAD-VKTAVA--AADVVMILTPDEFQG   86 (182)
T ss_dssp             HHHT--SCEEEECC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEEC-HHHHHH--TCSEEEECSCHHHHH
T ss_pred             HHCC--CEEEEEee-CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccccc-HHHHhh--hcCeeeeecchHHHH
Confidence            4544  45677999 9999999999999999977577665310   1246887765 777776  789999999999988


Q ss_pred             HHHHHHHHcC--CcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCcc
Q 020101          114 AAILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI  163 (331)
Q Consensus       114 ~~v~~~~~~G--i~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~  163 (331)
                      ++-++-++..  -...+.|+.||+-.-. .+.  -.+.-++.++.|-+.|-.
T Consensus        87 ~vy~~~I~p~lk~g~~L~FaHGfnIh~~-~I~--pp~~vdV~mvAPKgpG~~  135 (182)
T d1np3a2          87 RLYKEEIEPNLKKGATLAFAHGFSIHYN-QVV--PRADLDVIMIAPKAPGHT  135 (182)
T ss_dssp             HHHHHHTGGGCCTTCEEEESCCHHHHTT-SSC--CCTTCEEEEEEESSCSHH
T ss_pred             HHHHHhhhhhcCCCcEEEEeccceEEee-eee--cCCCCceEeeccccccch
Confidence            8888766643  4456779999853211 000  002333556677766633

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.93  E-value=0.00071  Score=56.28  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce----ec------------------CcccccCHHHhhhcC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE----HL------------------GLPVFNTVAEAKAET   98 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~----i~------------------G~p~y~sl~dl~~~~   98 (331)
                      .++|+|-|. ||+|+.++|.+.+. ++++++.-++......    ..                  ++++..++.++.+  
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~--   77 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--   77 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc--
Confidence            368999998 99999999988765 5788855444321010    01                  2333334555555  


Q ss_pred             CCCEEEEecChhhHHHHHHHHHHcCCcEE
Q 020101           99 KANASAIYVPPPFAAAAILEAMEAELDLV  127 (331)
Q Consensus        99 ~iDlaii~vp~~~~~~~v~~~~~~Gi~~i  127 (331)
                      ++|+++.|||.-...+.++.-+++|+|.+
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~v  106 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAI  106 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEE
Confidence            79999999999999999999999999863

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0099  Score=48.07  Aligned_cols=124  Identities=16%  Similarity=0.202  Sum_probs=88.9

Q ss_pred             CCCEEEEecChHHHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcH-HHHHHHHH
Q 020101          180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAE-EDAAALIK  258 (331)
Q Consensus       180 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~-~~~~~f~~  258 (331)
                      .|+||++.--++++.+.++.....|--..-|.-+|+.++ .-.+.+.++.+..||++|+|++=+=+.=.+- .-++-+.+
T Consensus        18 dG~Ig~i~nGAGlamaTmD~i~~~Gg~pANFlDiGG~a~-~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~GIv~   96 (150)
T d2nu7b1          18 DGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGAT-KERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIG   96 (150)
T ss_dssp             SSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCC-HHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHH
T ss_pred             cCcEEEEEcCCccchhhHHHHHHCCCCeeEEEecCCCcc-HHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHHHHHH
Confidence            499999999999999999999999999999999998862 4467888899999999999987644321111 22333444


Q ss_pred             HhC---CCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q 020101          259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK  325 (331)
Q Consensus       259 a~r---~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv~~v~~~~el~~~~~a~~~  325 (331)
                      +.+   .++|||+=..|..+.                    .=...|+++|+- +...++|.++++.+.+
T Consensus        97 A~k~~~~~iPiVVRl~Gtn~e--------------------eg~~iL~~~gl~-i~~~~~l~eAa~~aV~  145 (150)
T d2nu7b1          97 AVAEVGVNVPVVVRLEGNNAE--------------------LGAKKLADSGLN-IIAAKGLTDAAQQVVA  145 (150)
T ss_dssp             HHHHHTCCSCEEEEEESTTHH--------------------HHHHHHHHHCSS-EEECSSHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEecCCCHH--------------------HHHHHHHHCCCC-eEEeCCHHHHHHHHHH
Confidence            554   788999988775433                    335678898864 3344455556555443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.88  E-value=0.0024  Score=51.79  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=59.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCce-----ecCc--ccccCHHHhhhcCCCCEEEEecChhhHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTE-----HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAA  114 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~-----i~G~--p~y~sl~dl~~~~~iDlaii~vp~~~~~~  114 (331)
                      +|.|||+ |.||..+++.|.+.|+  +++ ++|++.  +.     -.|.  ....+.++... .+.|++++++|++...+
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~-~~D~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~dlIila~p~~~~~~   77 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINP--ESISKAVDLGIIDEGTTSIAKVED-FSPDFVMLSSPVRTFRE   77 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCH--HHHHHHHHTTSCSEEESCGGGGGG-TCCSEEEECSCHHHHHH
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEE-EEECCh--HHHHHHHHhhcchhhhhhhhhhhc-cccccccccCCchhhhh
Confidence            5889999 9999999999999886  455 788865  22     1233  22344444432 26899999999999999


Q ss_pred             HHHHHHHc-CCcEEEEecCCC
Q 020101          115 AILEAMEA-ELDLVVCITEGI  134 (331)
Q Consensus       115 ~v~~~~~~-Gi~~ivi~t~G~  134 (331)
                      ++++.... ....+++-..+.
T Consensus        78 vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          78 IAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHSCTTCEEEECCSC
T ss_pred             hhhhhhccccccccccccccc
Confidence            99997764 445544433333

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.78  E-value=0.0013  Score=54.68  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=62.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC----C-------------CCCCceecC--cccccCHHHhhhcCCCCEE
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT----P-------------KKGGTEHLG--LPVFNTVAEAKAETKANAS  103 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn----P-------------~~~g~~i~G--~p~y~sl~dl~~~~~iDla  103 (331)
                      ++|+|+|+ |.+|..++..|.+.|.++. ...    +             ... ..+..  +....+++++.+  +.|++
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~-l~~r~~~~~~~~~i~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~--~ad~I   75 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVR-IWGTEFDTEILKSISAGREHPRLG-VKLNGVEIFWPEQLEKCLE--NAEVV   75 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEE-EECCGGGHHHHHHHHTTCCBTTTT-BCCCSEEEECGGGHHHHHT--TCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEecccHHHHHHHhhhhhhhhhc-chhccccccccccHHHHHh--ccchh
Confidence            47899999 9999999999998888754 322    1             110 01111  223456777776  78999


Q ss_pred             EEecChhhHHHHHHHHHHc-CCcEEEEecCCCC
Q 020101          104 AIYVPPPFAAAAILEAMEA-ELDLVVCITEGIP  135 (331)
Q Consensus       104 ii~vp~~~~~~~v~~~~~~-Gi~~ivi~t~G~~  135 (331)
                      ++++|.....++++++... .-+.+++.+.|+.
T Consensus        76 i~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~  108 (180)
T d1txga2          76 LLGVSTDGVLPVMSRILPYLKDQYIVLISKGLI  108 (180)
T ss_dssp             EECSCGGGHHHHHHHHTTTCCSCEEEECCCSEE
T ss_pred             hcccchhhhHHHHHhhccccccceecccccCcc
Confidence            9999999999999997763 3456666777863

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.61  E-value=0.0017  Score=54.21  Aligned_cols=63  Identities=22%  Similarity=0.266  Sum_probs=51.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|+|. |++|+.+.+.+..+|.+++ ..||..  .+ .....+.+++++..  ..|++++.+|-.
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~-~~d~~~--~~-~~~~~~~~l~ell~--~sDiv~~~~pl~  103 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTP--KE-GPWRFTNSLEEALR--EARAAVCALPLN  103 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSC--CC-SSSCCBSCSHHHHT--TCSEEEECCCCS
T ss_pred             cCceEEEecc-ccccccceeeeeccccccc-cccccc--cc-cceeeeechhhhhh--ccchhhcccccc
Confidence            4567889999 9999999999999999987 778865  22 23445678999988  799999999863

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.54  E-value=0.0028  Score=51.93  Aligned_cols=112  Identities=20%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce----e-------cCcccccCHHHhhhc-CCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE----H-------LGLPVFNTVAEAKAE-TKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~----i-------~G~p~y~sl~dl~~~-~~iDlaii~vp~  109 (331)
                      ++||.|||. |+||..++++|.+.||++. ..|++....+    .       .......+.+++... ...+.+.+++++
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQA   78 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecC
Confidence            357899999 9999999999999999976 6776541000    0       112233455555432 245666666655


Q ss_pred             h-hHHHHHHHHHHcCC-cEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          110 P-FAAAAILEAMEAEL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       110 ~-~~~~~v~~~~~~Gi-~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      . ....++......-. ..+|+-.+-...++..++.+.+ ++.++.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l-~~~~~~~ld  126 (178)
T d1pgja2          79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQL-EAAGLRFLG  126 (178)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHH-HTTTCEEEE
T ss_pred             cchhhhhhhhhhhhccccceecccCccchhHHHHHHHHH-hhcceeEec
Confidence            4 44455555554432 2234433334455566666665 577777664

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.52  E-value=0.00072  Score=56.59  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCceec---------CcccccCHH-HhhhcCCCCEEEEecC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---------GLPVFNTVA-EAKAETKANASAIYVP  108 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~i~---------G~p~y~sl~-dl~~~~~iDlaii~vp  108 (331)
                      .+.+||+|+||||-.|+.+++.|.++ .+++...-..+..|+.+.         ..+...... +...  ++|++..++|
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~alp   80 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFS--NVDAVFCCLP   80 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGG--GCSEEEECCS
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhc--ccceeeeccc
Confidence            46799999999999999999999987 577775555555554431         122222222 2223  6999999999


Q ss_pred             hhhHHHHHHHHHHcCCcEEEEecCCC
Q 020101          109 PPFAAAAILEAMEAELDLVVCITEGI  134 (331)
Q Consensus       109 ~~~~~~~v~~~~~~Gi~~ivi~t~G~  134 (331)
                      .....+.+..+.+.+ +. +..+.++
T Consensus        81 ~~~s~~~~~~l~~~~-~~-v~~~~~~  104 (183)
T d2cvoa1          81 HGTTQEIIKGLPQEL-KI-VDLSADF  104 (183)
T ss_dssp             SSHHHHHHHTSCSSC-EE-EECSSTT
T ss_pred             cchHHHHHHHHHhcC-cc-cccchhh
Confidence            999999988766554 33 4456554

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.26  E-value=0.0047  Score=53.06  Aligned_cols=127  Identities=9%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHc------CCeEEEEeCCCCCC---ceecCcccc----cCHHHhhhcCCC
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKGG---TEHLGLPVF----NTVAEAKAETKA  100 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~------g~~iv~~VnP~~~g---~~i~G~p~y----~sl~dl~~~~~i  100 (331)
                      +...|.. ..+|+|||. |..|+.+..||++.      |.+++-+..+....   .+-.|+.+.    -+++|...  ..
T Consensus        37 ~~~~~kg-~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~--~A  112 (226)
T d1qmga2          37 LPDAFKG-IKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETIS--GS  112 (226)
T ss_dssp             HHHHTTT-CSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHH--TC
T ss_pred             hHHHhcC-CCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHh--hC
Confidence            4555633 256888999 99999999999994      46665577665311   124676533    25777776  78


Q ss_pred             CEEEEecChhhHHHHHHHHHH-cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEccCCCCccc
Q 020101          101 NASAIYVPPPFAAAAILEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK  164 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v~~~~~-~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viGPnc~Gi~~  164 (331)
                      |++++.+|.+...++-++... ..-...+.|+.||+-.-...+.-...+.-++.++.|-+.|-..
T Consensus       113 DiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~V  177 (226)
T d1qmga2         113 DLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSV  177 (226)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHH
T ss_pred             CEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCCCceEEEECCCCCCchH
Confidence            999999999999888876332 3344557799999542221110000023334566788877443

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.23  E-value=0.0072  Score=54.36  Aligned_cols=92  Identities=10%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--ceec-------CcccccCHHHhhhcCCCCEEEEecCh
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHL-------GLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--~~i~-------G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +.+++||+|.|+||-+|+.+++.|.+.|+++++..+.+...  ....       .+.-...+.++.+  ++|.++.+...
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a~~   89 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAAD   89 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhh--cCCeEeecccc
Confidence            45789999999999999999999999999988442322210  0111       1111222333333  78988865411


Q ss_pred             hh-------------------HHHHHHHHHHcCCcEEEEecC
Q 020101          110 PF-------------------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 ~~-------------------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ..                   ...+++.|.++|++.++..++
T Consensus        90 ~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS  131 (363)
T d2c5aa1          90 MGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS  131 (363)
T ss_dssp             CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cccccccccccccccccccchhhHHHHhHHhhCccccccccc
Confidence            11                   244677888999998776554

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.00016  Score=58.16  Aligned_cols=87  Identities=9%  Similarity=0.004  Sum_probs=51.1

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--ecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~  121 (331)
                      |.+||+ |+||+..++.|.+ ++.+....|.+... +.  -.+-..+.+++|+.+  ..|++++++|++...+++.++..
T Consensus         2 IgfIG~-G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~--~~DiVil~v~d~~i~~v~~~l~~   77 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEKHPE--LNGVVFVIVPDRYIKTVANHLNL   77 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC-----CEEECSCTTTHHHHHTTTCC
T ss_pred             EEEEeC-cHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhhhhc--cCcEEEEeccchhhhHHHhhhcc
Confidence            357999 9999999988865 45443344554310 01  122234567878776  68999999999999988877643


Q ss_pred             cCCcEEEEecCCCCh
Q 020101          122 AELDLVVCITEGIPQ  136 (331)
Q Consensus       122 ~Gi~~ivi~t~G~~e  136 (331)
                      .+ +.++-++++.+.
T Consensus        78 ~~-~ivi~~s~~~~~   91 (153)
T d2i76a2          78 GD-AVLVHCSGFLSS   91 (153)
T ss_dssp             SS-CCEEECCSSSCG
T ss_pred             cc-eeeeecccchhh
Confidence            33 333434555543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.05  E-value=0.002  Score=54.63  Aligned_cols=63  Identities=17%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-eecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ..+|.|||. |++|+.+++.+..+|.+++ .+||..... ...+. -+.+++++..  +.|++++++|-
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~~fg~~V~-~~d~~~~~~~~~~~~-~~~~l~~~l~--~sDii~~~~pl  106 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRNPELEKKGY-YVDSLDDLYK--QADVISLHVPD  106 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-BCSCHHHHHH--HCSEEEECSCC
T ss_pred             CCeEEEecc-cccchhHHHhHhhhccccc-ccCccccccccccee-eecccccccc--ccccccccCCc
Confidence            456889999 9999999999999999987 778876311 12222 2357999988  68999999984

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.02  E-value=0.0031  Score=53.33  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=49.3

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ..+|.|+|. |++|+.+.+.+..+|.+++ ..||......... .-+.+++++..  ..|++++.+|-
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~-~~~~~l~~l~~--~~D~v~~~~pl  107 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPMKGDHPD-FDYVSLEDLFK--QSDVIDLHVPG  107 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSSCCTT-CEECCHHHHHH--HCSEEEECCCC
T ss_pred             ceeeeeeec-ccccccccccccccceeee-ccCCccchhhhcc-hhHHHHHHHHH--hcccceeeecc
Confidence            356889999 9999999999999999987 7888653122222 23568999988  68999999985

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.98  E-value=0.0031  Score=53.16  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc--eecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~--~i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|||. |++|+.+.+.+..+|.+++ ..||....+  ...++.-+.+++++..  ..|++++.+|-.
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~l~~ll~--~sD~i~~~~plt  115 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLN  115 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred             eCceEEEecc-ccccccceeeeecccccee-eccCcccccchhhhccccccchhhccc--cCCEEEEeeccc
Confidence            3457899999 9999999999999999987 677765311  1346666778999988  689999999853

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.79  E-value=0.0052  Score=50.04  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCc--ccccCHHHhhhcCCCCEEEEecChh---
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGL--PVFNTVAEAKAETKANASAIYVPPP---  110 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~--p~y~sl~dl~~~~~iDlaii~vp~~---  110 (331)
                      .+..+|+|||+ |.+|+.++++|...|++-+..+|..... .+   .+|.  ..|.++.+...  +.|++|.+|+..   
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~--~~Divi~atss~~~i   98 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAPHPV   98 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSSSCC
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhc--cCCEEEEecCCCCcc
Confidence            46778999999 9999999999999998644488987421 01   1233  34556776666  799999999765   


Q ss_pred             hHHHHHHHHHHcC--CcEEEEecCCCC
Q 020101          111 FAAAAILEAMEAE--LDLVVCITEGIP  135 (331)
Q Consensus       111 ~~~~~v~~~~~~G--i~~ivi~t~G~~  135 (331)
                      ...+.++..+++.  -+.+|++--+.|
T Consensus        99 i~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          99 IHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             ccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            3467777776543  233455555544

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.011  Score=50.03  Aligned_cols=98  Identities=12%  Similarity=0.072  Sum_probs=60.8

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeC-CCC-CCcee-------cCcccccCHHHhhhcCCCCE
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVT-PKK-GGTEH-------LGLPVFNTVAEAKAETKANA  102 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~Vn-P~~-~g~~i-------~G~p~y~sl~dl~~~~~iDl  102 (331)
                      +..=|..++.+|+|.|+||-.|+.+++.|.+.|+  ++++... |.. .....       ..+.-.+++.+...  ++|.
T Consensus         6 ~~~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~--~~d~   83 (232)
T d2bkaa1           6 LREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDV   83 (232)
T ss_dssp             HHHHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSE
T ss_pred             HHHHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccc--cccc
Confidence            4444545667899999999999999999988775  5664432 211 10111       11222223444334  7899


Q ss_pred             EEEecCh-------h--------hHHHHHHHHHHcCCcEEEEecCC
Q 020101          103 SAIYVPP-------P--------FAAAAILEAMEAELDLVVCITEG  133 (331)
Q Consensus       103 aii~vp~-------~--------~~~~~v~~~~~~Gi~~ivi~t~G  133 (331)
                      ++.+...       .        ....+++.|.+.|++.++..++.
T Consensus        84 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~  129 (232)
T d2bkaa1          84 GFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK  129 (232)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             ccccccccccccchhhhhhhcccccceeeecccccCccccccCCcc
Confidence            9876521       1        23457888899999987766653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.62  E-value=0.011  Score=49.42  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee-------------------------cCcccccCHHHhhhc
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE   97 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i-------------------------~G~p~y~sl~dl~~~   97 (331)
                      +||+|||+ |..|...+-.+.+.|++++ ++|.+.  +.+                         ....+..++++..+ 
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~~V~-g~D~n~--~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~-   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL-   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH-
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCCcEE-EEeCCH--HHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh-
Confidence            47899999 9999888888989999987 777643  111                         11234456777665 


Q ss_pred             CCCCEEEEecCh
Q 020101           98 TKANASAIYVPP  109 (331)
Q Consensus        98 ~~iDlaii~vp~  109 (331)
                       +.|++++++|.
T Consensus        76 -~~d~i~i~VpT   86 (202)
T d1mv8a2          76 -DSDVSFICVGT   86 (202)
T ss_dssp             -TCSEEEECCCC
T ss_pred             -hCCEEEEecCc
Confidence             68999999986

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0079  Score=50.11  Aligned_cols=64  Identities=13%  Similarity=0.062  Sum_probs=50.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      +..+|.|+|. |++|+.+.+.+..+|.+++ ..||... .......-+.+++++..  ..|++++..|-
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~-~~~~~~~~~~~l~ell~--~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENK-LPLGNATQVQHLSDLLN--MSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CCCTTCEECSCHHHHHH--HCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEe-ecccccc-chhhhhhhhhhHHHHHh--hccceeecccC
Confidence            4567899999 9999999999999999987 6676542 23344555678999988  68999999884

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.56  E-value=0.026  Score=43.67  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-c---eecCcccc------c-CHHHhhhcCCCCEEEEecChhh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVF------N-TVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~---~i~G~p~y------~-sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      ++|+|+|+ |++|+.+++.|.+.|++++ .|+.+... +   +..+..++      + .++++.- .+.|.++.+++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~-vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i-~~a~~vv~~t~~d~   77 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGI-EDADMYIAVTGKEE   77 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTT-TTCSEEEECCSCHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcc-eecCChhhhhhhhhhhhhhhccCcccchhhhhhcCh-hhhhhhcccCCcHH
Confidence            47899999 9999999999999999977 66554310 0   11244433      1 2444422 26899998888765


Q ss_pred             HHH-HHHHHHHcCCcEEEEe
Q 020101          112 AAA-AILEAMEAELDLVVCI  130 (331)
Q Consensus       112 ~~~-~v~~~~~~Gi~~ivi~  130 (331)
                      .-- +...+-+.|++.+|..
T Consensus        78 ~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          78 VNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             HHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHHHHcCCceEEEE
Confidence            432 2334446787765543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0063  Score=44.72  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME  121 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~  121 (331)
                      ..+|+|+|+ |+.|...++.|.+.|.++. ..|.+..  . ..      .+++.+  ....  .+.+.+  ...+     
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~-~~D~~~~--~-~~------~~~~~~--~~~~--~~~~~~--~~~~-----   62 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGVTPR-VMDTRMT--P-PG------LDKLPE--AVER--HTGSLN--DEWL-----   62 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCCE-EEESSSS--C-TT------GGGSCT--TSCE--EESBCC--HHHH-----
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EeeCCcC--c-hh------HHHHhh--ccce--eecccc--hhhh-----
Confidence            446788999 9999999999999999866 5554431  0 00      112211  2222  222211  1111     


Q ss_pred             cCCcEEEEecCCCChhHHHHHHHHHhccCCcEEEc
Q 020101          122 AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG  156 (331)
Q Consensus       122 ~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~viG  156 (331)
                      .++.. |+.|+|++.+..  +.+.| +++|+.|||
T Consensus        63 ~~~d~-vi~SPGi~~~~~--~~~~a-~~~gi~iiG   93 (93)
T d2jfga1          63 MAADL-IVASPGIALAHP--SLSAA-ADAGIEIVG   93 (93)
T ss_dssp             HHCSE-EEECTTSCTTSH--HHHHH-HHTTCEEEC
T ss_pred             ccCCE-EEECCCCCCCCH--HHHHH-HHcCCCeEC
Confidence            24465 567999986542  23445 688899987

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.012  Score=52.54  Aligned_cols=90  Identities=12%  Similarity=0.068  Sum_probs=58.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-------e---------cCcccccCHHHhhhcCCCCEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------H---------LGLPVFNTVAEAKAETKANASAIY  106 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-------i---------~G~p~y~sl~dl~~~~~iDlaii~  106 (331)
                      +||+|.|++|-.|+.+++.|.+.|+++++..+.......       .         ..+.-+..++++.++.++|+++-+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl   80 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence            468999999999999999999999998854443321111       0         122223346666655679998843


Q ss_pred             c-----C-----hhh--------HHHHHHHHHHcCCcEEEEecC
Q 020101          107 V-----P-----PPF--------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       107 v-----p-----~~~--------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .     +     ++.        +..+++.|.+.+++.++..++
T Consensus        81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss  124 (338)
T d1udca_          81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCc
Confidence            2     1     111        224677888899998776664

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.18  Score=45.53  Aligned_cols=166  Identities=19%  Similarity=0.228  Sum_probs=94.9

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcH---HHHHHHHc--CCeEEEEeCCCCCCce----e----cCcccccCHHHhhhcCCC
Q 020101           34 APAVFVDKNTRVICQGITGKNGTF---HTEQAIEY--GTKMVGGVTPKKGGTE----H----LGLPVFNTVAEAKAETKA  100 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~---~~~~l~~~--g~~iv~~VnP~~~g~~----i----~G~p~y~sl~dl~~~~~i  100 (331)
                      |..+|.|+...++...  |.++..   ...-+.++  .+.++ .|+....|+.    +    .++|+|.|+++..+. .+
T Consensus         3 ~~~m~~p~~~a~Il~~--g~~~~~~gKTa~gLlRy~~~~~v~-~V~~~~aG~~~~~~l~g~~~~IPIv~s~~~A~~~-g~   78 (338)
T d2g0ta1           3 LWKLYQPGTPAAIVAW--GQLGTAHAKTTYGLLRHSRLFKPV-CVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GA   78 (338)
T ss_dssp             HHHHSCTTEEEEEECT--TTTTSGGGHHHHHHHHHCSSEEEE-EEESSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TC
T ss_pred             hhHhcCCCCCEEEEeC--CCcCCCCchHhhhHHhccCCCeEE-EEECCCCCCchhhhcCCCCCCCCEeCCHHHHHhc-CC
Confidence            6778888877665543  333322   22334444  35555 5444555542    2    378999999999874 79


Q ss_pred             CEEEEecCh------hhHHHHHHHHHHcCCcEEEEecCCCC--hhHHHHHHHHHhccCCcEEEccCCCCcccCCCccccc
Q 020101          101 NASAIYVPP------PFAAAAILEAMEAELDLVVCITEGIP--QHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGI  172 (331)
Q Consensus       101 Dlaii~vp~------~~~~~~v~~~~~~Gi~~ivi~t~G~~--e~~~~~l~~~a~~~~gi~viGPnc~Gi~~p~~~~~~~  172 (331)
                      |..|+-+.+      +...+.+.+|+++|... +   +|+-  -++-.++.++| +++|.+++-=.     .|. ....+
T Consensus        79 ~~liiGvAp~GG~lp~~w~~~i~~Al~~Gl~I-v---sGLH~~L~ddpel~~~A-~~~g~~i~DvR-----~p~-~~l~v  147 (338)
T d2g0ta1          79 EVLIIGVSNPGGYLEEQIATLVKKALSLGMDV-I---SGLHFKISQQTEFLKIA-HENGTRIIDIR-----IPP-LELDV  147 (338)
T ss_dssp             CEEEECCCSCCHHHHHHHHHHHHHHHHTTCEE-E---ECCCC--CCHHHHHHHH-HHHTCCEEESS-----SCC-SSCCC
T ss_pred             CEEEEEecccCCcCCHHHHHHHHHHHHcCCeE-E---ecchhhhccCHHHHHHH-HhCCCEEEEee-----CCC-Cccch
Confidence            999987754      45677899999999985 4   3432  23334556666 67777766311     121 01111


Q ss_pred             CCC--CCCCCCCEEEEec---ChHHHHH--HHHHHHhCCCCceEEEecCC
Q 020101          173 MPG--YIHKPGRIGIVSR---SGTLTYE--AVFQTTAVGLGQSTCVGIGG  215 (331)
Q Consensus       173 ~~~--~~~~~G~valisQ---SG~~~~~--~~~~~~~~g~g~s~~vs~Gn  215 (331)
                      ..+  .....-.|.++..   .|=+.++  +...++++|+- +.|+.||.
T Consensus       148 ~~G~~~~~~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~-a~fiaTGQ  196 (338)
T d2g0ta1         148 LRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIK-AGFLATGQ  196 (338)
T ss_dssp             CCSGGGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCC-EEEEECSH
T ss_pred             hhcchhccCCcEEEEeccCccccHHHHHHHHHHHHHhCCCC-eeEEEcCC
Confidence            111  1112223666654   4544444  44677788764 35676664

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.24  E-value=0.01  Score=45.98  Aligned_cols=85  Identities=9%  Similarity=0.114  Sum_probs=51.7

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCC--------C-ceecCccccc-CHHHhhhcCCCCEEEEecChhhHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--------G-TEHLGLPVFN-TVAEAKAETKANASAIYVPPPFAA  113 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~--------g-~~i~G~p~y~-sl~dl~~~~~iDlaii~vp~~~~~  113 (331)
                      +++|+|+ |++|+.+.+.|.+.|++++ .|+++..        + ..+.|-..-+ .++++.-+ +.|.++++++.+...
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~~vv-vid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~-~a~~vi~~~~~~~~~   78 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGHEVL-AVDINEEKVNAYASYATHAVIANATEENELLSLGIR-NFEYVIVAIGANIQA   78 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCE-EEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGG-GCSEEEECCCSCHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEE-EecCcHHHHHHHHHhCCcceeeecccchhhhccCCc-cccEEEEEcCchHHh
Confidence            4788999 9999999999999999877 6665531        0 0122222222 35554222 689999999865444


Q ss_pred             HHH--HHHHHcCCcEEEEec
Q 020101          114 AAI--LEAMEAELDLVVCIT  131 (331)
Q Consensus       114 ~~v--~~~~~~Gi~~ivi~t  131 (331)
                      ..+  ..+-..+...++.-+
T Consensus        79 ~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          79 STLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             HHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEeec
Confidence            332  233345666655433

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.021  Score=44.36  Aligned_cols=82  Identities=11%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             CeEEEEEcCCC-CCCcH---------HHHHHHHcCCeEEEEeCCCCCCcee-----cCcccc------cCHHHhhhcCCC
Q 020101           42 NTRVICQGITG-KNGTF---------HTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVF------NTVAEAKAETKA  100 (331)
Q Consensus        42 ~~~VaIvGasg-k~G~~---------~~~~l~~~g~~iv~~VnP~~~g~~i-----~G~p~y------~sl~dl~~~~~i  100 (331)
                      ..+|+|+|+-. ++|+.         .++.|++.|++.+ .||++.  .++     ..-+.|      .++.++.+.++|
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~I-liN~NP--eTVstd~d~aD~lYfeplt~e~v~~Ii~~E~p   80 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-MVNCNP--ETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKP   80 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-EECCCT--TSSTTSTTSSSEEECCCCSHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEE-EEecCh--hhhhcChhhcCceEEccCCHHHHHHHHHHhCC
Confidence            45788999832 56653         3467888999988 888776  332     111222      246666655589


Q ss_pred             CEEEEecChhhHHHHHHHHHHcCCcE
Q 020101          101 NASAIYVPPPFAAAAILEAMEAELDL  126 (331)
Q Consensus       101 Dlaii~vp~~~~~~~v~~~~~~Gi~~  126 (331)
                      |.+++..-.+.+.....++.+.|++.
T Consensus        81 ~~ii~~~GGQtalnla~~L~~~gv~i  106 (121)
T d1a9xa4          81 KGVIVQYGGQTPLKLARALEAAGVPV  106 (121)
T ss_dssp             SEEECSSSTHHHHTTHHHHHHTTCCB
T ss_pred             CEEEeehhhhhHHHHHHHHHHcCCcE
Confidence            99999999999999999999999885

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.017  Score=50.52  Aligned_cols=85  Identities=19%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec-----------Chh-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV-----------PPP-  110 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v-----------p~~-  110 (331)
                      .||+|.|++|-+|+.+++.|.+.|+.++...+...     ..+.-...++++.....+|.++.+.           +++ 
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~   77 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-----LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPAD   77 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-----CCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh-----ccccCHHHHHHHHhhcCCCEEEEcchhccccccchhhHHH
Confidence            57999999999999999999999998763333322     1233334566665544789988654           121 


Q ss_pred             h-------HHHHHHHHHHcCCcEEEEecC
Q 020101          111 F-------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       111 ~-------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .       ...+++.|.+.+++.+|..++
T Consensus        78 ~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS  106 (315)
T d1e6ua_          78 FIYQNMMIESNIIHAAHQNDVNKLLFLGS  106 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            1       234567777899988776655

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.02  E-value=0.056  Score=44.45  Aligned_cols=88  Identities=19%  Similarity=0.210  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCCCCceecCcc-cccCHHHhhhc--CCCCEEEEecCh--------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKKGGTEHLGLP-VFNTVAEAKAE--TKANASAIYVPP--------  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~~g~~i~G~p-~y~sl~dl~~~--~~iDlaii~vp~--------  109 (331)
                      .+|+|.|+||-+|+.+++.|.+.|+  +++ .+.++.. ....-+. .+.++.++.+.  ..+|.++.+...        
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~-~~~r~~~-~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~~   80 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVI-APARKAL-AEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSE   80 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEE-CCBSSCC-CCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSSH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEE-EEeCCch-hhcccccccccchhhhhhccccchheeeeeeeeeccccccc
Confidence            5789999999999999999998876  455 3333321 1111111 22344444432  257999887522        


Q ss_pred             --------hhHHHHHHHHHHcCCcEEEEecC
Q 020101          110 --------PFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       110 --------~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                              ......++.|.+.+++.++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss  111 (212)
T d2a35a1          81 EAFRAVDFDLPLAVGKRALEMGARHYLVVSA  111 (212)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cccccchhhhhhhcccccccccccccccccc
Confidence                    12345778888899999777665

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.95  E-value=0.012  Score=48.93  Aligned_cols=66  Identities=11%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|+|. |++|+.+++.+..+|.+++ ..+|......   ..+...+.+++|+.+  +.|++++.+|-.
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~~l~--~sD~v~~~~plt  111 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLH  111 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCC
T ss_pred             cccceeeccc-cccchhhhhhhhccCceEE-EEeeccccccccccccccccCCHHHHHH--hccchhhccccc
Confidence            4567899999 9999999999999999977 6776542121   245666788999988  799999999853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.83  E-value=0.041  Score=47.13  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc-e---------ecCcccc----cC---HHHhhhcCCCCEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E---------HLGLPVF----NT---VAEAKAETKANAS  103 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~-~---------i~G~p~y----~s---l~dl~~~~~iDla  103 (331)
                      +..||+|.|++|.+|+.+++.|.+.|+++++.+.+..... .         -.++.+.    .+   +.+...  +.+.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~--~~~~~   79 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVV   79 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc--Ccchh
Confidence            3456999999999999999999999999885554322100 0         0122211    12   333333  67887


Q ss_pred             EEecChh-------hHHHHHHHHHHcCCcEEEEecC
Q 020101          104 AIYVPPP-------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       104 ii~vp~~-------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +.+.++.       .....++.|.+.+....+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss  115 (312)
T d1qyda_          80 ISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSE  115 (312)
T ss_dssp             EECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSC
T ss_pred             hhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEee
Confidence            7765543       3556777788876554455543

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.017  Score=47.41  Aligned_cols=85  Identities=18%  Similarity=0.096  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce---------------------------ecC--cccc--c
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE---------------------------HLG--LPVF--N   89 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~---------------------------i~G--~p~y--~   89 (331)
                      .+||+|-|. ||+|+.++|.+.+. .+++++.-+|. . .+                           +.|  ++++  +
T Consensus         1 tikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~-~-~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~   77 (166)
T d1gado1           1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLL-D-ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER   77 (166)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSS-C-HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CeEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCC-C-HHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCC
Confidence            368999999 99999999988875 68888544432 1 11                           223  2333  3


Q ss_pred             CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        90 sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++++|= +.++|+++.||-.-...+-++.-++.|++.+++
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkVii  118 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM  118 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred             ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEe
Confidence            5777762 347999999999888888888889999999775

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.76  E-value=0.014  Score=48.85  Aligned_cols=66  Identities=9%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcccccCHHHhhhcCCCCEEEEecChh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPP  110 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~~  110 (331)
                      +..+|.|+|. |++|+.+.+.+..+|.+++ ..||......   ..+...+.+++++..  ..|++++.+|-.
T Consensus        46 ~g~tvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~ll~--~sD~v~l~~plt  114 (191)
T d1gdha1          46 DNKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPST  114 (191)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred             cccceEEeec-ccchHHHHHHHHhhccccc-cccccccccchhhcccccccCCHHHHHh--hCCeEEecCCCC
Confidence            4567899999 9999999999999999987 6777542111   234455678999988  689999999863

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.58  E-value=0.016  Score=47.63  Aligned_cols=86  Identities=12%  Similarity=-0.031  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC--------ce-----------------ecC--ccccc--CHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--------TE-----------------HLG--LPVFN--TVAE   93 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g--------~~-----------------i~G--~p~y~--sl~d   93 (331)
                      +||+|-|. ||+|+.++|.+.+.++++++.-+|....        ++                 +.|  ++++.  +.++
T Consensus         1 ikigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            57899999 9999999998888899998655553210        00                 122  23333  4677


Q ss_pred             hhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           94 AKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        94 l~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      ++-. .++|+++.||-.-...+.++..++.|++.+++
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii  116 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII  116 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             CcccccCCceeEeccccccchHHhhhhhccccceeee
Confidence            7642 47999999999888888889999999999775

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.052  Score=42.44  Aligned_cols=81  Identities=12%  Similarity=0.106  Sum_probs=56.2

Q ss_pred             CCCeEEEEEcCCC-CCCcH---------HHHHHHHcCCeEEEEeCCCCCCcee-----cCcccc------cCHHHhhhcC
Q 020101           40 DKNTRVICQGITG-KNGTF---------HTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVF------NTVAEAKAET   98 (331)
Q Consensus        40 ~k~~~VaIvGasg-k~G~~---------~~~~l~~~g~~iv~~VnP~~~g~~i-----~G~p~y------~sl~dl~~~~   98 (331)
                      ++..+|+|+|+.. ++|+.         ..+.|++.||+.+ .||++.  .++     ..-+.|      .++.++.+.+
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~i-liN~NP--~TVstd~d~aD~lYfePlt~e~v~~Ii~~E   81 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-NVNSNP--ATIMTDPEMADATYIEPIHWEVVRKIIEKE   81 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-EECSCT--TCGGGCGGGSSEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEE-EecCch--HhhhcChhhcceeeeecCCHHHHHHHHHHh
Confidence            3557899999832 45642         3467888999988 888876  332     112222      2466666666


Q ss_pred             CCCEEEEecChhhHHHHHHHHHHcC
Q 020101           99 KANASAIYVPPPFAAAAILEAMEAE  123 (331)
Q Consensus        99 ~iDlaii~vp~~~~~~~v~~~~~~G  123 (331)
                      +||.++.....+.+.....++.+.|
T Consensus        82 ~pd~il~~~GGQtalnla~~L~~~g  106 (127)
T d1a9xa3          82 RPDAVLPTMGGQTALNCALELERQG  106 (127)
T ss_dssp             CCSEEECSSSHHHHHHHHHHHHHTT
T ss_pred             CcCCeEEEeeeehHhHHHHHHHHcC
Confidence            8999998888898888888887664

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.44  E-value=0.033  Score=45.86  Aligned_cols=87  Identities=14%  Similarity=0.008  Sum_probs=62.8

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc----CCeEEEEeCCCCCCce---------------------------ecC--cccc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY----GTKMVGGVTPKKGGTE---------------------------HLG--LPVF   88 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~----g~~iv~~VnP~~~g~~---------------------------i~G--~p~y   88 (331)
                      .+||+|-|. ||+|+.++|.+.+.    .+++++.-+|..  .+                           +.|  ++++
T Consensus         1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~--~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~   77 (173)
T d1obfo1           1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGD--PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVD   77 (173)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEE
T ss_pred             CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCC--hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEE
Confidence            368999999 99999999987752    567885544432  11                           123  2333


Q ss_pred             --cCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 020101           89 --NTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus        89 --~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                        ++++++|=. .++|+++.||-.-...+.+..-++.|++.+++-+
T Consensus        78 ~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSA  123 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISA  123 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESS
T ss_pred             ecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEec
Confidence              357777643 5799999999988888888888899999977533

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.37  E-value=0.027  Score=47.13  Aligned_cols=89  Identities=16%  Similarity=0.027  Sum_probs=61.9

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc-----CCeEEEEeCCCCCCc---------ee-------------------------
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGGT---------EH-------------------------   82 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~-----g~~iv~~VnP~~~g~---------~i-------------------------   82 (331)
                      ++||+|-|. ||+|+.++|.+.+.     .+++++..||...-+         ++                         
T Consensus         2 ~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           2 PIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred             CeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence            478999999 99999999987764     357887777764201         01                         


Q ss_pred             cCccc-----ccCHHHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           83 LGLPV-----FNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        83 ~G~p~-----y~sl~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .|.++     .++.++++-. .++|+++.||-.-...+.++..++.|++.+++ |.
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-SA  135 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI-SA  135 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred             cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeee-cc
Confidence            11111     1235666522 36899999998888888888888999999665 44

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.32  E-value=0.043  Score=48.77  Aligned_cols=90  Identities=16%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe-CCCCCCc----eecCcccc-----cC---HHHhhhcCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGT----EHLGLPVF-----NT---VAEAKAETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V-nP~~~g~----~i~G~p~y-----~s---l~dl~~~~~iDlaii~v  107 (331)
                      +.++|+|+|+||.+|+.+++.|.+.|+++++.+ ||+....    ...|+.+.     +.   ++++..  .+|.+.+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~--~~~~~~~~~   79 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINT   79 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc--CCceEEeec
Confidence            346688999999999999999999999988554 3432100    11233322     21   334444  688888766


Q ss_pred             Chh------hHHHHHHHHHHcCCcEEEEecC
Q 020101          108 PPP------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       108 p~~------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +..      ....+++.|.+.|++..+++++
T Consensus        80 ~~~~~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          80 TSQAGDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHHhCCCceEEEee
Confidence            543      3466888888999765566664

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.19  E-value=0.031  Score=48.75  Aligned_cols=89  Identities=9%  Similarity=0.011  Sum_probs=56.6

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------ecCccc-------ccCHHHhhhcCCCCEEEEecC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------HLGLPV-------FNTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------i~G~p~-------y~sl~dl~~~~~iDlaii~vp  108 (331)
                      ||.|.|++|-+|+.+++.|++.|+++++..|....+..        ..++..       ..+++++.+..++|.++-+.-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            68899999999999999999999998854333221110        112222       224555555456899985532


Q ss_pred             h----------h--------hHHHHHHHHHHcCCcEEEEecC
Q 020101          109 P----------P--------FAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ~----------~--------~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      .          +        ....+++.|.+.+++..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            1          1        1124567788888877676665

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.04  E-value=0.022  Score=47.17  Aligned_cols=64  Identities=19%  Similarity=0.362  Sum_probs=49.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ...++.|+|. |+.|+.+.+.+..+|.+++ ..||....+.  ..++. +.+++|+..  +.|++++.+|-
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~sDiv~~~~Pl  108 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIE-LLSLDDLLA--RADFISVHLPK  108 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCE-ECCHHHHHH--HCSEEEECCCC
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccceEE-eecCCCChhHHhhcCce-eccHHHHHh--hCCEEEEcCCC
Confidence            4567889999 9999999999999999987 7888652111  22333 568999988  78999999985

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.97  E-value=0.014  Score=49.93  Aligned_cols=60  Identities=13%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEec
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV  107 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~v  107 (331)
                      ++||.|.|+||-+|+.+++.|.+.|++++ +++.+.  -   .+.-+.+++++.++.++|+++-+.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi-~~~r~~--~---D~~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVI-PTDVQD--L---DITNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEE-EECTTT--C---CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEE-Eeechh--c---cCCCHHHHHHHHHHcCCCEEEeec
Confidence            36899999999999999999999999988 677654  1   122334566666555789988664

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.77  E-value=0.083  Score=44.61  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----------ecCcccc-------cCHHHhhhcCCCCEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----------HLGLPVF-------NTVAEAKAETKANAS  103 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----------i~G~p~y-------~sl~dl~~~~~iDla  103 (331)
                      ..||+|.|+||.+|+.+++.|.+.|+++++.+.....-..           ..++.+.       .++.+...  ..|.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~v   80 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh--hceee
Confidence            3568999999999999999999999998865532221000           0122211       12333333  67877


Q ss_pred             EEecChhh---HHHHHHHHHHcCCcEEEEecC
Q 020101          104 AIYVPPPF---AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       104 ii~vp~~~---~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +.......   ....++.+.+.+++.++..++
T Consensus        81 i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~  112 (307)
T d1qyca_          81 ISTVGSLQIESQVNIIKAIKEVGTVKRFFPSE  112 (307)
T ss_dssp             EECCCGGGSGGGHHHHHHHHHHCCCSEEECSC
T ss_pred             eecccccccchhhHHHHHHHHhccccceeeec
Confidence            76665544   355677788888777564443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.59  E-value=0.079  Score=39.77  Aligned_cols=81  Identities=7%  Similarity=-0.075  Sum_probs=52.6

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCcee------cCccccc---CHHHhhhcCCCCEEEEecCh
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH------LGLPVFN---TVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i------~G~p~y~---sl~dl~~~~~iDlaii~vp~  109 (331)
                      .-+..+|.|||. |+.|..-++.|.+.|.+++ .++|... ++.      .++..-.   +-+++.   ..++++.++..
T Consensus         9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~-v~~~~~~-~~~~~~~~~~~i~~~~~~~~~~dl~---~~~lv~~at~d   82 (113)
T d1pjqa1           9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLT-VNALTFI-PQFTVWANEGMLTLVEGPFDETLLD---SCWLAIAATDD   82 (113)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEE-EEESSCC-HHHHHHHTTTSCEEEESSCCGGGGT---TCSEEEECCSC
T ss_pred             EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEeccCC-hHHHHHHhcCCceeeccCCCHHHhC---CCcEEeecCCC
Confidence            556788999999 9999999999999998876 6777652 221      1111111   123332   57888888765


Q ss_pred             hhH-HHHHHHHHHcCCc
Q 020101          110 PFA-AAAILEAMEAELD  125 (331)
Q Consensus       110 ~~~-~~~v~~~~~~Gi~  125 (331)
                      +.. .++.++|-++|+.
T Consensus        83 ~~~n~~i~~~a~~~~il   99 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIF   99 (113)
T ss_dssp             HHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHcCCE
Confidence            544 5666777777654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.45  E-value=0.056  Score=47.70  Aligned_cols=91  Identities=14%  Similarity=0.076  Sum_probs=55.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce--------------ecCcccccCHHHhhhcCCCCEEEE
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------------HLGLPVFNTVAEAKAETKANASAI  105 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~--------------i~G~p~y~sl~dl~~~~~iDlaii  105 (331)
                      |..||.|.|+||-+|+.+++.|.+.|+++. +++..... ..              ...+.-+..+.++.+...+|+++.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~-~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~   85 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVK-GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   85 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence            457789999999999999999999999977 54432210 10              012222333555555446888887


Q ss_pred             ecChhh------------------HHHHHHHHHHcCCcEEEEecC
Q 020101          106 YVPPPF------------------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       106 ~vp~~~------------------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +.....                  ...+++.|.+.+.+.++++++
T Consensus        86 ~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          86 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            664311                  234566677766544454444

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=93.20  E-value=0.027  Score=46.28  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=61.9

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce--------------------------ecCc--ccc--cCHHH
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLGL--PVF--NTVAE   93 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~--------------------------i~G~--p~y--~sl~d   93 (331)
                      ||+|-|. ||+|+.++|.+.+.+.++++..||...-+.                          +.|.  +++  .++++
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            6888998 999999999988888999976667542110                          1232  233  25666


Q ss_pred             hhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           94 AKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        94 l~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +|= +.++|+++.||-.-...+.+..-++.|++.+++
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVii  117 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII  117 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred             CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEee
Confidence            652 236999999998888888788888889998665

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.067  Score=40.62  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .|...||.|+|+ |..|+.......+.|++++ ..||..
T Consensus         8 ~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~-v~d~~~   44 (111)
T d1kjqa2           8 RPAATRVMLLGS-GELGKEVAIECQRLGVEVI-AVDRYA   44 (111)
T ss_dssp             STTCCEEEEESC-SHHHHHHHHHHHTTTCEEE-EEESST
T ss_pred             CCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence            466778999998 9999999999999999976 778776

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.92  E-value=0.085  Score=42.71  Aligned_cols=85  Identities=12%  Similarity=0.064  Sum_probs=55.6

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHc--CC--eEEEEeCCCCC-----Cce------------ecCcccccCHHHh---h
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEY--GT--KMVGGVTPKKG-----GTE------------HLGLPVFNTVAEA---K   95 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~--g~--~iv~~VnP~~~-----g~~------------i~G~p~y~sl~dl---~   95 (331)
                      .|.++|+|+|. |+.|+.+++.+.+.  ++  ++++..|-+..     +-.            ....+ ..+++++   .
T Consensus         2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   79 (168)
T d1ebfa1           2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTK-TLPLDDLIAHL   79 (168)
T ss_dssp             CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCB-CCCHHHHHHHH
T ss_pred             CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccc-cccHHHHHHHh
Confidence            47899999999 99999999988864  33  46654442210     000            00111 1122222   2


Q ss_pred             -hcCCCCEEEEecChhhHHHHHHHHHHcCCcE
Q 020101           96 -AETKANASAIYVPPPFAAAAILEAMEAELDL  126 (331)
Q Consensus        96 -~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~  126 (331)
                       ....+|++++++..+...+...+++++|++.
T Consensus        80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hV  111 (168)
T d1ebfa1          80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISI  111 (168)
T ss_dssp             TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEE
T ss_pred             ccCCCceEEEEecCChHHHHHHHHHHHcCCeE
Confidence             2245789999999888888889999999986

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.91  E-value=0.21  Score=39.43  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           44 RVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      ||+||||+|+.|+.+.-.+...+.  +++ .+|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elv-LiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLT-LYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEE-EEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEE-EEeccc
Confidence            689999999999998887777665  354 666543

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.87  E-value=0.064  Score=43.90  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce--------------------------ecCc--ccc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLGL--PVF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~--------------------------i~G~--p~y--~sl   91 (331)
                      +||+|-|. ||+|+.++|.+.+. .+++++.-+|...-+.                          +.|.  +++  .++
T Consensus         2 ikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p   80 (169)
T d1u8fo1           2 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   80 (169)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             cEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence            68999999 99999999987764 6899866666542110                          1232  233  246


Q ss_pred             HHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           92 AEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        92 ~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++|=. .++|+++.||-.-...+.++.-++.|++.+++
T Consensus        81 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkVii  119 (169)
T d1u8fo1          81 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII  119 (169)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE
T ss_pred             hhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEee
Confidence            777632 47999999999888888778778899999775

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.65  E-value=0.057  Score=44.05  Aligned_cols=88  Identities=11%  Similarity=0.057  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce--------------------------ecCc--ccc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLGL--PVF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~--------------------------i~G~--p~y--~sl   91 (331)
                      +||+|=|. ||+|+.++|.+.+. .+++++.-||..+-+.                          +.|.  +++  +++
T Consensus         1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            47899999 99999999988875 6888855557542110                          1122  233  356


Q ss_pred             HHhhhc-CCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~~-~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      +++|=. .++|+++-||-.-...+.+...+++|++.+++ |.
T Consensus        80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-SA  120 (166)
T d2b4ro1          80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM-SA  120 (166)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SS
T ss_pred             HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEE-ec
Confidence            776532 47999999999988888888999999999665 44

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=92.53  E-value=0.23  Score=43.69  Aligned_cols=92  Identities=18%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC-CCCC------------Cce---e-cCcccccCHHHhhhcCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG------------GTE---H-LGLPVFNTVAEAKAETKAN  101 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn-P~~~------------g~~---i-~G~p~y~sl~dl~~~~~iD  101 (331)
                      .|+..+|.|.|++|-+|+.+++.|++.|+++++.+. ++..            .+.   + ..+.-..+++++..  ++|
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~   85 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAA   85 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCS
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cch
Confidence            477889999999999999999999999999886653 2110            000   1 11222223445544  678


Q ss_pred             EEEEecCh---------------hhHHHHHHHHHHc-CCcEEEEecC
Q 020101          102 ASAIYVPP---------------PFAAAAILEAMEA-ELDLVVCITE  132 (331)
Q Consensus       102 laii~vp~---------------~~~~~~v~~~~~~-Gi~~ivi~t~  132 (331)
                      .++-+...               .....+++.|.+. +++.++..++
T Consensus        86 ~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS  132 (342)
T d1y1pa1          86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             hhhhhcccccccccccccccchhhhHHHHHHhhhccccccccccccc
Confidence            77644322               1134556777775 6888776665

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.15  E-value=0.13  Score=40.82  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      |+..||+|||+ |+.|..+...+...|.  +++ .+|.+.
T Consensus         3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv-L~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV-IVDVVK   40 (146)
T ss_dssp             TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-Eeeccc
Confidence            66789999998 9999988877777663  555 888654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=92.11  E-value=0.08  Score=43.37  Aligned_cols=87  Identities=14%  Similarity=0.057  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc-CCeEEEEeCCCCCCce--------------------------ecC--cccc--cCH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE--------------------------HLG--LPVF--NTV   91 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~-g~~iv~~VnP~~~g~~--------------------------i~G--~p~y--~sl   91 (331)
                      +||+|-|. ||+|+.++|.+.+. .+++++.-+|... +.                          +.|  ++++  .++
T Consensus         2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~~d~-~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p   79 (171)
T d3cmco1           2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDA-NTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (171)
T ss_dssp             EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCH-HHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCCCCH-HHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCH
Confidence            68999999 99999999988765 6888855444321 10                          223  2333  357


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                      ++++= +.++|+++.||-.-...+-++.-++.|++.+++ |.
T Consensus        80 ~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkVii-Sa  120 (171)
T d3cmco1          80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII-SA  120 (171)
T ss_dssp             GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred             HHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEE-ec
Confidence            77763 247999999999888888888889999999665 43

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.03  E-value=0.28  Score=38.92  Aligned_cols=37  Identities=19%  Similarity=0.060  Sum_probs=27.5

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~   77 (331)
                      ..|..||+|||+ |+.|..+.-.+...++ +++ .+|.+.
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSS
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEecc
Confidence            357789999999 9999877766666665 555 777665

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=91.96  E-value=0.039  Score=47.02  Aligned_cols=84  Identities=17%  Similarity=0.040  Sum_probs=51.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecC--------------
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP--------------  108 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp--------------  108 (331)
                      +||.|.|++|-+|+.+.+.|.+.|..++...+.+.   ....+.-...++++.++.+||++|-+.-              
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~---~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~   77 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE---FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA   77 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSS---SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCCcc---ccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCcccc
Confidence            47899999999999999998887754432233221   1122333334666665557899986541              


Q ss_pred             ----hhhHHHHHHHHHHcCCcEEEE
Q 020101          109 ----PPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus       109 ----~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                          ......+++.|.+.+++.+.+
T Consensus        78 ~~~n~~~~~~l~~~~~~~~~~~~~~  102 (298)
T d1n2sa_          78 QLLNATSVEAIAKAANETGAWVVHY  102 (298)
T ss_dssp             HHHHTHHHHHHHHHHTTTTCEEEEE
T ss_pred             ccccccccccchhhhhccccccccc
Confidence                112334556666777776554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=91.91  E-value=0.24  Score=42.60  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=59.1

Q ss_pred             EEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecCh-hhHHHHHHHHHHcC-CcEEEEecCCCChhHHHHHHHHH
Q 020101           69 MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAAL  146 (331)
Q Consensus        69 iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~-~~~~~~v~~~~~~G-i~~ivi~t~G~~e~~~~~l~~~a  146 (331)
                      .+..++|.     -.|+.+.++..|+.+  +.|++++++|. +...+++++..+.- -..+|+-.+-.+.....++.+.+
T Consensus       118 ~~~~~~pE-----e~Gv~v~~d~~Eav~--~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l  190 (242)
T d2b0ja2         118 CIHLVHPE-----DVGLKVTSDDREAVE--GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDL  190 (242)
T ss_dssp             EEESSCGG-----GGTCEEESCHHHHHT--TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHT
T ss_pred             hhhcCCHH-----HCCCEEECCHHHHHh--cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhc
Confidence            44345553     368899999999988  89999999986 55788888877643 34455434445566666776666


Q ss_pred             hccCCcEEEccCC
Q 020101          147 NNQSKTRLVGPNC  159 (331)
Q Consensus       147 ~~~~gi~viGPnc  159 (331)
                       ++.+++++++..
T Consensus       191 -~~kgi~vi~~hp  202 (242)
T d2b0ja2         191 -GREDLNITSYHP  202 (242)
T ss_dssp             -TCTTSEEEECBC
T ss_pred             -ccCCCEEECCCc
Confidence             688899997653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.78  E-value=0.2  Score=44.18  Aligned_cols=88  Identities=14%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             EEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---------ecCcccc-------cCHHHhhhcCCCCEEEEecC
Q 020101           45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------HLGLPVF-------NTVAEAKAETKANASAIYVP  108 (331)
Q Consensus        45 VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---------i~G~p~y-------~sl~dl~~~~~iDlaii~vp  108 (331)
                      |.|.|++|-+|+.+++.|++.|+++++..+.......         ..++..+       .+++.+....++|+++-+..
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa   83 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAG   83 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEccc
Confidence            6688999999999999999999998854333221010         0122222       23444444457999985431


Q ss_pred             ----hh------h--------HHHHHHHHHHcCCcEEEEecC
Q 020101          109 ----PP------F--------AAAAILEAMEAELDLVVCITE  132 (331)
Q Consensus       109 ----~~------~--------~~~~v~~~~~~Gi~~ivi~t~  132 (331)
                          ..      .        ...+++.|.+.+++.++..++
T Consensus        84 ~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          84 LKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             CCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             cccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence                11      1        134567788899988776665

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.75  E-value=0.098  Score=42.85  Aligned_cols=85  Identities=11%  Similarity=-0.067  Sum_probs=57.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCCCce---------------------------ecCc--cccc-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTE---------------------------HLGL--PVFN-   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~g~~---------------------------i~G~--p~y~-   89 (331)
                      +||+|-|. ||+|+.++|.+.+.   .+++++.-+|... +.                           +.|.  +++. 
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~-~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~   78 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGV-KQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD   78 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTCH-HHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCCH-HHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecC
Confidence            57899998 99999999987763   3678865555321 10                           1232  2222 


Q ss_pred             -CHHHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        90 -sl~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                       +++++|= +.++|+++.||-.-...+-++.-++.|++.+++
T Consensus        79 ~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVii  120 (172)
T d1rm4a1          79 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI  120 (172)
T ss_dssp             SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEE
T ss_pred             CChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEe
Confidence             4666542 136889998888777777777778888888664

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.70  E-value=0.22  Score=39.75  Aligned_cols=82  Identities=15%  Similarity=0.062  Sum_probs=53.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE-e--------------CCCCCCceec---------------Cccccc
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEY--GTKMVGG-V--------------TPKKGGTEHL---------------GLPVFN   89 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~-V--------------nP~~~g~~i~---------------G~p~y~   89 (331)
                      +.+|+|.|+||.+|+..++.++++  .|++++. .              +|+..  -+.               ...++.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v--~i~d~~~~~~l~~~~~~~~~~v~~   79 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRA--VIADPSLYNDLKEALAGSSVEAAA   79 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEE--EESCGGGHHHHHHHTTTCSSEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccc--eeccHHHHHHHHHHhhhccccccc
Confidence            366888999999999999988875  5777754 2              23321  011               122232


Q ss_pred             C---HHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcE
Q 020101           90 T---VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDL  126 (331)
Q Consensus        90 s---l~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~  126 (331)
                      .   +.++. ..++|+++.++..-.-......|+++|.+.
T Consensus        80 g~~~l~~~~-~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~i  118 (150)
T d1r0ka2          80 GADALVEAA-MMGADWTMAAIIGCAGLKATLAAIRKGKTV  118 (150)
T ss_dssp             SHHHHHHHH-TSCCSEEEECCCSGGGHHHHHHHHHTTSEE
T ss_pred             Cccchheec-ccccceeeeecCchhHHHHHHHHHhcCCEE
Confidence            2   22222 236888888888888888888888888654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.28  E-value=0.13  Score=41.90  Aligned_cols=85  Identities=14%  Similarity=0.031  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCCCcHHHHHHHHc---CCeEEEEeCCCCC-------------Cc---e---------ecCc--ccc--cCH
Q 020101           44 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG-------------GT---E---------HLGL--PVF--NTV   91 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~~~---g~~iv~~VnP~~~-------------g~---~---------i~G~--p~y--~sl   91 (331)
                      ||+|-|. ||+|+.++|.+.+.   ++++++.-++...             |.   +         +.|.  +++  +++
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            6888998 99999999987753   5788865444210             00   0         2232  333  357


Q ss_pred             HHhhh-cCCCCEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 020101           92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVC  129 (331)
Q Consensus        92 ~dl~~-~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~ivi  129 (331)
                      +++|= +.++|+++.||-.-...+.++.-++.|++.+++
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVii  119 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII  119 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEE
Confidence            77763 247999999999888888888889999999775

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.28  E-value=0.15  Score=47.00  Aligned_cols=94  Identities=15%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             ccccc--CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC--CCCceecCcccccC--HHHhhhcCCCCEEEEec
Q 020101           34 APAVF--VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEHLGLPVFNT--VAEAKAETKANASAIYV  107 (331)
Q Consensus        34 l~~ll--~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~--~~g~~i~G~p~y~s--l~dl~~~~~iDlaii~v  107 (331)
                      +..++  .-+.++|++-|+ |..|+..++.|.+.|+++++.+|-.  ..|+.+.|+|++++  +.|+... ..+++.+.+
T Consensus        28 ~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~g~pv~s~~~~~~~~~~-~~~~~~v~~  105 (395)
T d2py6a1          28 VREVIARRGNATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTELATH-DRDLVALNT  105 (395)
T ss_dssp             HHHHHHHHGGGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECHHHHHHHHHT-CTTEEEEEC
T ss_pred             HHHHHHhcCCCceEEEEcC-chhHHHHHHHHHHCCceEEEEecCchhhcCceecceEeecHHHhhhhhhc-cCcEEEEEe
Confidence            44554  223467889999 9999999999999999999888843  23577999999973  4455433 456555444


Q ss_pred             C-hhhHHH-HHHHHHHcCCcEEEE
Q 020101          108 P-PPFAAA-AILEAMEAELDLVVC  129 (331)
Q Consensus       108 p-~~~~~~-~v~~~~~~Gi~~ivi  129 (331)
                      + +..... .-..|...|++.+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~  129 (395)
T d2py6a1         106 CRYDGPKRFFDQICRTHGIPHLNF  129 (395)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEH
T ss_pred             ccccchhhHHHHHHHhcCCcccch
Confidence            3 333333 335566789988654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.73  E-value=0.16  Score=45.26  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      +.|.|.|++|-.|+.+++.|++.|+++++..+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            34558899999999999999999999885544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.59  E-value=0.4  Score=35.03  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCC-cHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNG-TFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G-~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +..+|=++|. |..| +.+++.|.+.|+++. +-|.+.
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~Vs-GSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQIS-GSDIAD   42 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCEEE-EEESCC
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEeCCC
Confidence            4556778999 6677 445788999999887 666543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.25  Score=43.18  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcC-CeEEEEeCCCCCC-ce---------ec-CcccccCHHH-hhhcCCCCEEEEecCh
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TE---------HL-GLPVFNTVAE-AKAETKANASAIYVPP  109 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g-~~iv~~VnP~~~g-~~---------i~-G~p~y~sl~d-l~~~~~iDlaii~vp~  109 (331)
                      +||.|.|+||-+|+.+++.|.+.| ++++ .+|....+ ..         +. .+.-+.++.+ +..  ++|+++-+.-.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~-~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~--~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVY-GLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEE-EEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEE-EEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh--CCCcccccccc
Confidence            478999999999999999998887 5776 44432211 11         11 2333444444 333  68999865432


Q ss_pred             h------------------hHHHHHHHHHHcCCcEEEEe
Q 020101          110 P------------------FAAAAILEAMEAELDLVVCI  130 (331)
Q Consensus       110 ~------------------~~~~~v~~~~~~Gi~~ivi~  130 (331)
                      .                  ....+++.|.+.+++.+++.
T Consensus        78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~s  116 (342)
T d2blla1          78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS  116 (342)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccccccccCCccccccccccccccccccccccccccccc
Confidence            1                  14457788888899886543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.96  E-value=0.26  Score=42.51  Aligned_cols=31  Identities=29%  Similarity=0.562  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      .+|.|.|++|-+|+.+++.|++.|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~   31 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLV   31 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence            3688999999999999999999999988543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.72  E-value=0.14  Score=45.82  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP   75 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP   75 (331)
                      +||.|.|++|-+|+.+++.|.+.|++++..++.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            478999999999999999999999986656654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.61  E-value=0.5  Score=41.19  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             cccCCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        36 ~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      ..+..+..+|.|.|++|-+|+.+++.|.+.|+++++..+
T Consensus        10 ~~~~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          10 KELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             HHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HhCCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            334334456778899999999999999999999885544

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.61  E-value=0.26  Score=44.15  Aligned_cols=31  Identities=19%  Similarity=0.118  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      +||.|.|++|-+|+.+++.|++.|++++ ++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~-~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVC-IVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEE-EEe
Confidence            5789999999999999999999999987 553

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.25  E-value=0.041  Score=44.50  Aligned_cols=66  Identities=14%  Similarity=0.097  Sum_probs=43.6

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce---ecCcccccCHHHhhhcCCCCEEEEecCh
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~---i~G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      .+++.+|+|+|+ |..++.++..|.+.|++-+..+|.+... +.   ..+...   +.+... .+.|++|-+||.
T Consensus        14 ~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~---~~~~~~-~~~DliINaTpi   83 (167)
T d1npya1          14 LNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY---INSLEN-QQADILVNVTSI   83 (167)
T ss_dssp             CCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE---ESCCTT-CCCSEEEECSST
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh---hhcccc-cchhhheecccc
Confidence            456778999999 8899999999999998634488876521 11   122222   222221 368999999984

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.01  E-value=0.92  Score=38.62  Aligned_cols=98  Identities=18%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             CCCCCCCccccc-CCCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEE-
Q 020101           27 FTTAPPPAPAVF-VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA-  104 (331)
Q Consensus        27 ~~~~~~~l~~ll-~~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlai-  104 (331)
                      ||..++++...- .=+.+.++|.|+|+.+|+.+.+.|.+.|++++ ..+.+.  ++.    .-...+++.+ ...++.. 
T Consensus         2 ~~~~~~~~~~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vv-i~~~~~--~~~----~~~~~~~~~~-~g~~~~~~   73 (272)
T d1g0oa_           2 YDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVI-VNYANS--TES----AEEVVAAIKK-NGSDAACV   73 (272)
T ss_dssp             TTCCCSCSSGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESSC--HHH----HHHHHHHHHH-TTCCEEEE
T ss_pred             CCCCCCCCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCCc--hHH----HHHHHHHHHh-hCCceeeE
Confidence            556655554421 11335677889999999999999999999976 444332  110    0011222222 2333333 


Q ss_pred             --EecChhhHHHHHHHHHHc--CCcEEEEecCC
Q 020101          105 --IYVPPPFAAAAILEAMEA--ELDLVVCITEG  133 (331)
Q Consensus       105 --i~vp~~~~~~~v~~~~~~--Gi~~ivi~t~G  133 (331)
                        +.+-++.+.+.++++.+.  ++..++ ...|
T Consensus        74 ~~D~~~~~~v~~~~~~~~~~~g~idilV-~nag  105 (272)
T d1g0oa_          74 KANVGVVEDIVRMFEEAVKIFGKLDIVC-SNSG  105 (272)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEE-ECCC
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCccc-cccc
Confidence              345566677777776654  466544 4444

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.19  Score=41.44  Aligned_cols=66  Identities=14%  Similarity=0.029  Sum_probs=45.7

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce-----e---------------------------cCcccccC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H---------------------------LGLPVFNT   90 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~-----i---------------------------~G~p~y~s   90 (331)
                      .+|+|||+ |.||+.++..+...|++++ .+|+....-+     +                           ..+....+
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEE-EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            46889999 9999999999999999976 7666541000     0                           11234455


Q ss_pred             HHHhhhcCCCCEEEEecChhhH
Q 020101           91 VAEAKAETKANASAIYVPPPFA  112 (331)
Q Consensus        91 l~dl~~~~~iDlaii~vp~~~~  112 (331)
                      +.+...  +.|+++=++|.+.-
T Consensus        83 ~~~a~~--~ad~ViEav~E~l~  102 (192)
T d1f0ya2          83 AASVVH--STDLVVEAIVENLK  102 (192)
T ss_dssp             HHHHTT--SCSEEEECCCSCHH
T ss_pred             hHhhhc--ccceehhhcccchh
Confidence            666555  68999988887543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.27  Score=42.83  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      .||+|.|++|-+|+.+++.|++.|+++++..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d   32 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVD   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            5789999999999999999999999988543

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.47  Score=37.77  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHc--CCeEEEE---------------eCCCCCC--ce-------------ecCccccc-
Q 020101           43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGG---------------VTPKKGG--TE-------------HLGLPVFN-   89 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~--g~~iv~~---------------VnP~~~g--~~-------------i~G~p~y~-   89 (331)
                      .+|+|.|+||.+|+..++.++++  .|++++.               .+|+...  ++             ..+.+++. 
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            46889999999999999988886  4777754               2333210  00             01233333 


Q ss_pred             --CHHHhhhcCCCCEEEEecChhhHHHHHHHHHHcCCcE
Q 020101           90 --TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDL  126 (331)
Q Consensus        90 --sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~Gi~~  126 (331)
                        .+.++....++|+++.++..-.-..-.-.+++.|.+.
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~i  120 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI  120 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEE
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeE
Confidence              2444444446899999999999888899999999764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.5  Score=41.23  Aligned_cols=32  Identities=22%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      .||+|.|++|-+|+.+++.|++.|+++++..|
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            47889999999999999999999999885444

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.46  E-value=0.81  Score=35.87  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      .-+|+|+|+ |.+|...++.++..|.+++ .++++.
T Consensus        27 g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi-~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGA-GPIGLVSVLAAKAYGAFVV-CTARSP   60 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCH
T ss_pred             CCEEEEEcc-cccchhhHhhHhhhccccc-ccchHH
Confidence            446788997 8899999998888899877 666654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.34  E-value=0.3  Score=40.73  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCc---eecCcccccCHHHhhhcCCCCEEEEecChh-hHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI  116 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~---~i~G~p~y~sl~dl~~~~~iDlaii~vp~~-~~~~~v  116 (331)
                      +..+|+|.|. |+.|+...+.|.+.|.+++ .+|++...-   ...|.+.. +.+++.. .++|+.+-|--.. ...+.+
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Gakvv-v~d~d~~~~~~~~~~g~~~~-~~~~~~~-~~~DI~iPcA~~~~I~~~~a  101 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAV-ALEDVLS-TPCDVFAPCAMGGVITTEVA  101 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEEC-CGGGGGG-CCCSEEEECSCSCCBCHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EecchHHHHHHHHhhccccc-Ccccccc-ccceeeecccccccccHHHH
Confidence            4567889998 9999999999999999987 666653100   12344433 3566665 3789988654332 233333


Q ss_pred             HHHHHcCCcEEEEecCC-CChhHHHHHHHHHhccCCcEEEccC
Q 020101          117 LEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus       117 ~~~~~~Gi~~ivi~t~G-~~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      +   +.+.+.|+=.+.+ ++.++..++   . +++|+.++ |+
T Consensus       102 ~---~i~ak~i~e~AN~p~~~~~~~~~---L-~~rgI~~i-PD  136 (201)
T d1c1da1         102 R---TLDCSVVAGAANNVIADEAASDI---L-HARGILYA-PD  136 (201)
T ss_dssp             H---HCCCSEECCSCTTCBCSHHHHHH---H-HHTTCEEC-CH
T ss_pred             h---hhhhheeeccCCCCcchhhHHHH---h-cccceEEE-eh
Confidence            3   4567764311212 233333322   2 56777554 54

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.05  E-value=0.38  Score=41.60  Aligned_cols=112  Identities=11%  Similarity=0.086  Sum_probs=65.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEE-------eCCCCCC-ceec------------Cccccc--------CH
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEHL------------GLPVFN--------TV   91 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~-------VnP~~~g-~~i~------------G~p~y~--------sl   91 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.       .||+..- ++..            .+.-|.        +-
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPG  112 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEET
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeech
Confidence            45678999998 999999999999999998864       4554320 0000            000000        11


Q ss_pred             HHhhhcCCCCEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCC-ChhHHHHHHHHHhccCCcEEEccC
Q 020101           92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGI-PQHDMVRVKAALNNQSKTRLVGPN  158 (331)
Q Consensus        92 ~dl~~~~~iDlaii~v-p~~~~~~~v~~~~~~Gi~~ivi~t~G~-~e~~~~~l~~~a~~~~gi~viGPn  158 (331)
                      +++.. .++|+.+-|- ......+.++...+.|+|.|+=.+-+. +++..+.+   . +++||.++ |+
T Consensus       113 ~~~~~-~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~l---l-~~~gI~vv-PD  175 (255)
T d1bgva1         113 EKPWG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFL---M-QQPNMVVA-PS  175 (255)
T ss_dssp             CCGGG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHH---H-HCTTCEEE-CH
T ss_pred             hhccc-ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHHHH---H-HhcCCEEe-hH
Confidence            12222 3689887443 334457788888888999855222232 22222222   2 46777765 44

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.78  E-value=0.68  Score=36.45  Aligned_cols=31  Identities=16%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEE
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMV   70 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv   70 (331)
                      |+..||+|++.||-.|-.....+.+.|.++-
T Consensus         1 P~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~   31 (163)
T d2csua3           1 PRGNKVAIMTNAGGPGVLTADELDKRGLKLA   31 (163)
T ss_dssp             CSSSEEEEEESCHHHHHHHHHHHHTTTCEEC
T ss_pred             CCCCeEEEEECChHHHHHHHHHHHHcCCccC
Confidence            6778899999998888777788888887653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.14  E-value=0.14  Score=40.14  Aligned_cols=33  Identities=24%  Similarity=0.199  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK   76 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~   76 (331)
                      +||+|+|.+|.+|+.+.+.|.+.|++++ ..+.+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~-l~~R~   33 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSRR   33 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEESS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            4689997669999999999999999966 54543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.56  E-value=0.65  Score=39.21  Aligned_cols=80  Identities=23%  Similarity=0.237  Sum_probs=53.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCC-EEEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iD-laii~vp~~~~~~~v~~~  119 (331)
                      +.+.++|.|+|+.+|+.+++.|.+.|++++ .++.+.  +         .++++.++.+.. +..+.+.++.+.+.++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~-~~~r~~--~---------~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   71 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLV-ACDIEE--G---------PLREAAEAVGAHPVVMDVADPASVERGFAEA   71 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESCH--H---------HHHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--H---------HHHHHHHHcCCeEEEEecCCHHHHHHHHHHH
Confidence            345577889999999999999999999976 555432  1         123333321222 333567778888888888


Q ss_pred             HHc--CCcEEEEecCC
Q 020101          120 MEA--ELDLVVCITEG  133 (331)
Q Consensus       120 ~~~--Gi~~ivi~t~G  133 (331)
                      .+.  ++..+|+ ..|
T Consensus        72 ~~~~g~iDilVn-nAG   86 (242)
T d1ulsa_          72 LAHLGRLDGVVH-YAG   86 (242)
T ss_dssp             HHHHSSCCEEEE-CCC
T ss_pred             HHhcCCceEEEE-CCc
Confidence            775  5887664 444

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.84  Score=35.96  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCC-eEEEEeCCCCCCce---ecCcccc-----cCHHHhhh------cCCCCEEEEe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE---HLGLPVF-----NTVAEAKA------ETKANASAIY  106 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~-~iv~~VnP~~~g~~---i~G~p~y-----~sl~dl~~------~~~iDlaii~  106 (331)
                      .-+|+|+|+ |.+|...++.++..|. +++ .++++...-+   -.|...+     .+..+..+      ...+|+++.+
T Consensus        27 gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi-~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          27 GHKVLVCGA-GPIGMVTLLVAKAMGAAQVV-VTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEE-EEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCEEEEECC-CccHHHHHHHHHHcCCceEE-eccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            456888998 9999998998888898 465 6666541111   1232211     12332221      1368999999


Q ss_pred             cChhhHHHHHHHHHHcCCcEEE
Q 020101          107 VPPPFAAAAILEAMEAELDLVV  128 (331)
Q Consensus       107 vp~~~~~~~v~~~~~~Gi~~iv  128 (331)
                      +..+...+....+++.|=+.++
T Consensus       105 ~G~~~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2         105 TGAEASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             SCCHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCchhHHHHHHHhcCCCEEEE
Confidence            9988888877777777755533

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.63  Score=40.34  Aligned_cols=30  Identities=37%  Similarity=0.620  Sum_probs=25.8

Q ss_pred             EE-EEEcCCCCCCcHHHHHHHHcCCeEEEEe
Q 020101           44 RV-ICQGITGKNGTFHTEQAIEYGTKMVGGV   73 (331)
Q Consensus        44 ~V-aIvGasgk~G~~~~~~l~~~g~~iv~~V   73 (331)
                      || .|.|++|-+|+.+++.|.+.|+++++.+
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~   32 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIV   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            56 5789999999999999999999988543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.61  E-value=0.92  Score=35.47  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=27.6

Q ss_pred             CCCCeEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           39 VDKNTRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        39 ~~k~~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      .+...||.|||+ |++|..+...+...+.  +++ .+|.+.
T Consensus         3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di~~   41 (148)
T d1ldna1           3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDANE   41 (148)
T ss_dssp             TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH
T ss_pred             CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeecc
Confidence            345678999998 9999988877766554  565 777654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=85.27  E-value=2.6  Score=33.47  Aligned_cols=64  Identities=8%  Similarity=0.013  Sum_probs=37.5

Q ss_pred             CeEEEEEcCCCCCCcH--HHHHHHH-c---CCeEEEEeCCCCCCce-----------ecC----cccccCHHHhhhcCCC
Q 020101           42 NTRVICQGITGKNGTF--HTEQAIE-Y---GTKMVGGVTPKKGGTE-----------HLG----LPVFNTVAEAKAETKA  100 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~--~~~~l~~-~---g~~iv~~VnP~~~g~~-----------i~G----~p~y~sl~dl~~~~~i  100 (331)
                      ++||+|||+ |..|..  ++..+.. .   +-+++ .+|.+...-+           ..+    +....+.+|...  +.
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~--da   77 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII--DA   77 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT--TC
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc--CC
Confidence            578999999 888754  3333432 2   34665 7776531000           011    223346777776  79


Q ss_pred             CEEEEecCh
Q 020101          101 NASAIYVPP  109 (331)
Q Consensus       101 Dlaii~vp~  109 (331)
                      |++++....
T Consensus        78 d~Vv~~~~~   86 (171)
T d1obba1          78 DFVINTAMV   86 (171)
T ss_dssp             SEEEECCCT
T ss_pred             CeEeeeccc
Confidence            999987643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.23  E-value=0.56  Score=39.88  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=55.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE---EEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA---SAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl---aii~vp~~~~~~~v~  117 (331)
                      +.+.++|.|+++.+|+.+.+.|.+.|++++ .++.+.  +..     -...+++.++.+.++   ..+.+.++.+.+.++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~-i~~r~~--~~~-----~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~   75 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVV-VASRNL--EEA-----SEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE   75 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESCH--HHH-----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HHH-----HHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH
Confidence            445677899999999999999999999976 555432  111     112333333223333   235667788888888


Q ss_pred             HHHHc--CCcEEEEecCCC
Q 020101          118 EAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       118 ~~~~~--Gi~~ivi~t~G~  134 (331)
                      ++.+.  ++..+|+ ..|+
T Consensus        76 ~~~~~~g~iDiLVn-nAG~   93 (251)
T d1vl8a_          76 AVKEKFGKLDTVVN-AAGI   93 (251)
T ss_dssp             HHHHHHSCCCEEEE-CCCC
T ss_pred             HHHHHcCCCCEEEE-CCCC
Confidence            88775  5888664 5553

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.15  E-value=0.57  Score=37.47  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCe
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTK   68 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~   68 (331)
                      ..+|+|.|++|.+|+.+++.|.+.|++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~   29 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDK   29 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCc
Confidence            457899999999999999999988854

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.03  E-value=0.85  Score=36.80  Aligned_cols=32  Identities=13%  Similarity=0.025  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +||+|||. |..|-..+-.+ ..|++++ ++|.+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~-a~g~~V~-g~Din~   32 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLL-SLQNEVT-IVDILP   32 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-TTTSEEE-EECSCH
T ss_pred             CEEEEECC-ChhHHHHHHHH-HCCCcEE-EEECCH
Confidence            47899998 88887666545 5699987 777654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.02  E-value=0.64  Score=39.63  Aligned_cols=83  Identities=13%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE---EEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA---SAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl---aii~vp~~~~~~~v~  117 (331)
                      +.++++|.|+++.+|+.+++.|.+.|++++ .++.+.  +..     -+..+++.+. ..+.   ..+.+..+...+.++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~-i~~r~~--~~l-----~~~~~~~~~~-~~~~~~~~~D~s~~~~~~~~~~   75 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVY-TCSRNE--KEL-----DECLEIWREK-GLNVEGSVCDLLSRTERDKLMQ   75 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESCH--HHH-----HHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HHH-----HHHHHHHHhc-CCCceEEEeecCCHHHHHHHHH
Confidence            556688999999999999999999999976 555433  111     1112233221 2222   235677788888888


Q ss_pred             HHHHc--C-CcEEEEecCC
Q 020101          118 EAMEA--E-LDLVVCITEG  133 (331)
Q Consensus       118 ~~~~~--G-i~~ivi~t~G  133 (331)
                      ++.+.  | +..++ ...|
T Consensus        76 ~~~~~~~g~idili-nnag   93 (258)
T d1ae1a_          76 TVAHVFDGKLNILV-NNAG   93 (258)
T ss_dssp             HHHHHTTSCCCEEE-ECCC
T ss_pred             HHHHHhCCCcEEEe-cccc
Confidence            88875  4 55544 4444

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.70  E-value=1.2  Score=38.92  Aligned_cols=90  Identities=21%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-Cc-ccccCHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-GL-PVFNTVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-G~-p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      .+.++|.|+++.+|+.+.+.|.+.|++++ ..+......... .. ..-...+++.. .......+....+...+.++++
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vv-i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVV-VNDLGGDFKGVGKGSSAADKVVEEIRR-RGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECCCBCTTSCBCCSHHHHHHHHHHHH-TTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCCchhhhhhhhHHHHHHHHHHHhh-cccccccccchHHHHHHHHHHH
Confidence            44566779999999999999999999976 544332101110 00 11112333333 2455666777778888888888


Q ss_pred             HHc--CCcEEEEecCCC
Q 020101          120 MEA--ELDLVVCITEGI  134 (331)
Q Consensus       120 ~~~--Gi~~ivi~t~G~  134 (331)
                      .+.  ++..+|+ ..|+
T Consensus        85 ~~~~G~iDiLVn-NAGi  100 (302)
T d1gz6a_          85 LDTFGRIDVVVN-NAGI  100 (302)
T ss_dssp             HHHTSCCCEEEE-CCCC
T ss_pred             HHHcCCCCEEEE-CCcc
Confidence            875  4887664 4453

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.20  E-value=0.96  Score=39.40  Aligned_cols=87  Identities=15%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCe--EEEEeC-CCCCCce-----e--cCcc-------cccCHHHhhhcCCCCEEE
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTK--MVGGVT-PKKGGTE-----H--LGLP-------VFNTVAEAKAETKANASA  104 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~--iv~~Vn-P~~~g~~-----i--~G~p-------~y~sl~dl~~~~~iDlai  104 (331)
                      .++|.|.|+||-.|+.+++.|.+.|++  ++ .+| +...+..     .  .++.       -+..+.++..  ..|.++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~-~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~--~~~~v~   78 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT-VLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIV   78 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEE-EEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE-EEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHh--hhhhhh
Confidence            467999999999999999999888765  55 343 2221111     0  1222       2233555555  566666


Q ss_pred             EecChh------------------hHHHHHHHHHHcCCcEEEEec
Q 020101          105 IYVPPP------------------FAAAAILEAMEAELDLVVCIT  131 (331)
Q Consensus       105 i~vp~~------------------~~~~~v~~~~~~Gi~~ivi~t  131 (331)
                      .+.-..                  ....+++.|...+++.+++.|
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss  123 (346)
T d1oc2a_          79 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST  123 (346)
T ss_dssp             ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             hhhhcccccchhhCcccceeeehHhHHhhhhhhcccccccccccc
Confidence            553211                  133456778888888765543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.10  E-value=0.34  Score=39.36  Aligned_cols=36  Identities=19%  Similarity=0.136  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +.++|+|.|+++.+|+.+.+.+.+.|.+++ .++.+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~-~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchh-hcccch
Confidence            557788999999999999999999999976 565543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.99  E-value=0.17  Score=40.56  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +.-+|+|+|+ |-+|....+.++..|.+.+..++++.
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH
Confidence            4566889999 88999888888888887554666543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=83.85  E-value=0.17  Score=40.90  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCCCcHHHHHHHHcCCe-EEEEeCCCC
Q 020101           42 NTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKK   77 (331)
Q Consensus        42 ~~~VaIvGasgk~G~~~~~~l~~~g~~-iv~~VnP~~   77 (331)
                      .-+|+|+|+ |-+|...++.++..|.+ ++ .++++.
T Consensus        28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi-~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGI-GAVGLMGIAGAKLRGAGRII-GVGSRP   62 (174)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTCSCEE-EECCCH
T ss_pred             CCEEEEEcC-Ccchhhhhhhhhcccccccc-cccchh
Confidence            445788998 88898888988888974 55 777754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.74  E-value=1.7  Score=33.88  Aligned_cols=85  Identities=16%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCce---ecCcc-c--c----cCHHHhhh---cCCCCEEEEec
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLP-V--F----NTVAEAKA---ETKANASAIYV  107 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~---i~G~p-~--y----~sl~dl~~---~~~iDlaii~v  107 (331)
                      +.-+|+|.|+ |-.|...++.++..|.+.+..++++....+   -.|.. +  |    ..+++...   ...+|++++++
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            3456888999 567888888888888765546666541111   12211 1  1    11222211   12456666666


Q ss_pred             ChhhHHHHHHHHHHcCCcE
Q 020101          108 PPPFAAAAILEAMEAELDL  126 (331)
Q Consensus       108 p~~~~~~~v~~~~~~Gi~~  126 (331)
                      ....+.+....+...|-..
T Consensus       107 G~~~~~~~~~~~~~~g~~~  125 (176)
T d2fzwa2         107 GNVKVMRAALEACHKGWGV  125 (176)
T ss_dssp             CCHHHHHHHHHTBCTTTCE
T ss_pred             CCHHHHHHHHHhhcCCcee
Confidence            6555555555555555444

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.09  E-value=0.64  Score=39.53  Aligned_cols=85  Identities=11%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCE---EEEecChhhHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA---SAIYVPPPFAAAAIL  117 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDl---aii~vp~~~~~~~v~  117 (331)
                      +.+.++|.|+|+.+|+.+.+.|.+.|++++ .++.+.  +..     -...+++.++...++   ..+.+.++.+.+.++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r~~--~~~-----~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~   79 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVA-VIYRSA--ADA-----VEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ   79 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEE-EEESSC--TTH-----HHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HHH-----HHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence            456677889999999999999999999976 555543  111     111233322212232   235667888888888


Q ss_pred             HHHHc--CCcEEEEecCCC
Q 020101          118 EAMEA--ELDLVVCITEGI  134 (331)
Q Consensus       118 ~~~~~--Gi~~ivi~t~G~  134 (331)
                      ++.+.  ++..+|+ ..|.
T Consensus        80 ~~~~~~g~iDilVn-nAg~   97 (260)
T d1h5qa_          80 QIDADLGPISGLIA-NAGV   97 (260)
T ss_dssp             HHHHHSCSEEEEEE-CCCC
T ss_pred             HHHHHhCCCcEecc-cccc
Confidence            88875  4776554 4453

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=83.01  E-value=1.4  Score=34.36  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      .||+|||+ |+.|..+.-.+...|.  +++ .+|.+.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~~   36 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANE   36 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeccc
Confidence            57889998 9999887776666553  565 777654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.96  E-value=1.1  Score=32.20  Aligned_cols=78  Identities=15%  Similarity=0.217  Sum_probs=44.3

Q ss_pred             eEEEEEcCCCCCCc-HHHHHHHHcCCeEEEEeCCCCCCc----eecCccccc--CHHHhhhcCCCCEEEEecC-hhhHHH
Q 020101           43 TRVICQGITGKNGT-FHTEQAIEYGTKMVGGVTPKKGGT----EHLGLPVFN--TVAEAKAETKANASAIYVP-PPFAAA  114 (331)
Q Consensus        43 ~~VaIvGasgk~G~-~~~~~l~~~g~~iv~~VnP~~~g~----~i~G~p~y~--sl~dl~~~~~iDlaii~vp-~~~~~~  114 (331)
                      +||=++|. |-.|. .+++.|.+.|+.+. +-|-+..-.    +-.|+++|.  +.+.+ .  ++|++|.... ++..++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~Vs-GSD~~~~~~t~~L~~~Gi~i~~gh~~~~i-~--~~d~vV~SsAI~~~npe   76 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVY-GSNIEETERTAYLRKLGIPIFVPHSADNW-Y--DPDLVIKTPAVRDDNPE   76 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHHTTCCEESSCCTTSC-C--CCSEEEECTTCCTTCHH
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEE-EEeCCCChhHHHHHHCCCeEEeeeccccc-C--CCCEEEEecCcCCCCHH
Confidence            56778998 55553 45688888999877 656443101    135777764  22222 2  4676655442 122233


Q ss_pred             HHHHHHHcCCcE
Q 020101          115 AILEAMEAELDL  126 (331)
Q Consensus       115 ~v~~~~~~Gi~~  126 (331)
                       +.+|.++|++.
T Consensus        77 -l~~A~~~gIpv   87 (89)
T d1j6ua1          77 -IVRARMERVPI   87 (89)
T ss_dssp             -HHHHHHTTCCE
T ss_pred             -HHHHHHcCCCc
Confidence             56666777664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.45  E-value=0.9  Score=38.15  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=50.5

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM  120 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~  120 (331)
                      +.+.++|.|+|+.+|+.+.+.|.+.|++++ .++.+.  +....              -..+..+.+.++.+.++++++.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~-~~~r~~--~~~~~--------------~~~~~~Dv~~~~~v~~~~~~~~   68 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVA-VTHRGS--GAPKG--------------LFGVEVDVTDSDAVDRAFTAVE   68 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESSS--CCCTT--------------SEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCc--chhcC--------------ceEEEEecCCHHHHHHHHHHHH
Confidence            345577889999999999999999999976 555433  11111              1123345566778888888887


Q ss_pred             Hc--CCcEEEEecCC
Q 020101          121 EA--ELDLVVCITEG  133 (331)
Q Consensus       121 ~~--Gi~~ivi~t~G  133 (331)
                      +.  ++..+|+ ..|
T Consensus        69 ~~~g~iDiLVn-nAG   82 (237)
T d1uzma1          69 EHQGPVEVLVS-NAG   82 (237)
T ss_dssp             HHHSSCSEEEE-ECS
T ss_pred             HhcCCceEEEe-eec
Confidence            75  5887665 344

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=82.40  E-value=0.65  Score=36.93  Aligned_cols=69  Identities=7%  Similarity=0.001  Sum_probs=45.4

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCC-ce-------ecCcccccCHHHhhhcCCCCEEEEecChhh
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------HLGLPVFNTVAEAKAETKANASAIYVPPPF  111 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g-~~-------i~G~p~y~sl~dl~~~~~iDlaii~vp~~~  111 (331)
                      .+..+|+|+|+ |-.++.++-.|.+.|.+++ .+|.+... ++       ...+.. -+.++... .+.|++|-+||...
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~-I~nRt~~ka~~l~~~~~~~~~~~~-~~~~~~~~-~~~dliIN~Tp~G~   91 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVT-ITNRTVSRAEELAKLFAHTGSIQA-LSMDELEG-HEFDLIINATSSGI   91 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHTGGGSSEEE-CCSGGGTT-CCCSEEEECCSCGG
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccceEEE-eccchHHHHHHHHHHHhhcccccc-cccccccc-cccceeecccccCc
Confidence            45678899999 7778888888888898854 88987521 01       011122 23444332 36899999998765


Q ss_pred             H
Q 020101          112 A  112 (331)
Q Consensus       112 ~  112 (331)
                      .
T Consensus        92 ~   92 (170)
T d1nyta1          92 S   92 (170)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=1.5  Score=35.71  Aligned_cols=80  Identities=19%  Similarity=0.173  Sum_probs=56.4

Q ss_pred             CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHH
Q 020101          222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKT  301 (331)
Q Consensus       222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~  301 (331)
                      .+.|+|+-.+.||++..|=+=+=-.+..-+-...+++|++.+|-|.|+.=-     -+||--...+         .|-..
T Consensus        38 ~vv~fl~eAA~DP~V~~Ik~TlYR~a~~S~Ii~aLi~Aa~nGK~Vtv~vEL-----kARFDEe~NI---------~wa~~  103 (187)
T d1xdpa3          38 HVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVEL-----QARFDEEANI---------HWAKR  103 (187)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHTTCEEEEEECT-----TCSSTTTTTT---------TTTHH
T ss_pred             HHHHHHHHHhcCCCccEEEEEEEEecCCccHHHHHHHHHHcCCEEEEEEec-----hhcccHHHHH---------HHHHH
Confidence            356788888899999998765544444456677899999999999998722     2333222333         35678


Q ss_pred             HHHcCCeEeCCHhH
Q 020101          302 LREAGVTVVESPAK  315 (331)
Q Consensus       302 ~~~aGv~~v~~~~e  315 (331)
                      |+++|+-++..+..
T Consensus       104 Le~aGv~ViyG~~g  117 (187)
T d1xdpa3         104 LTEAGVHVIFSAPG  117 (187)
T ss_dssp             HHHHTCEEEECCTT
T ss_pred             HHHCCCEEEcCccc
Confidence            99999998766543

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.18  E-value=4.9  Score=30.11  Aligned_cols=93  Identities=20%  Similarity=0.144  Sum_probs=58.8

Q ss_pred             EEEEEcCCCCCCcHHHHHHH-HcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCCCEEEEecChhhHHHHHHHHHHc
Q 020101           44 RVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA  122 (331)
Q Consensus        44 ~VaIvGasgk~G~~~~~~l~-~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~iDlaii~vp~~~~~~~v~~~~~~  122 (331)
                      ||++.+. ........+.+. ++++++.. .+...         ....++.+ +  +.|.+++......-.++++.+.+.
T Consensus         2 KIl~~~~-~~~e~~~l~~~~~~~~~~v~~-~~~~~---------~~~~~~~~-~--~~d~ii~~~~~~~~~~vl~~l~~~   67 (131)
T d1dxya2           2 KIIAYGA-RVDEIQYFKQWAKDTGNTLEY-HTEFL---------DENTVEWA-K--GFDGINSLQTTPYAAGVFEKMHAY   67 (131)
T ss_dssp             EEEECSC-CTTTHHHHHHHHHHHCCEEEE-CSSCC---------CTTGGGGG-T--TCSEEEECCSSCBCHHHHHHHHHT
T ss_pred             EEEEEec-CcCcHHHHHHHHHHcCeEEEE-cCCCC---------CHHHHHHh-c--CCCEEEEecCCCCCHHHHhhcccC
Confidence            5666665 233444455444 46887652 22111         01123333 3  689888876666777888888888


Q ss_pred             CCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          123 ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       123 Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      +.|.|...+.|+..-|.+    +| +++||.|.
T Consensus        68 ~Lk~I~~~~vG~d~ID~~----~a-~~~gI~V~   95 (131)
T d1dxya2          68 GIKFLTIRNVGTDNIDMT----AM-KQYGIRLS   95 (131)
T ss_dssp             TCCEEEESSSCCTTBCHH----HH-HHTTCEEE
T ss_pred             CeEEEEEccccccccccc----cc-ccceEEEE
Confidence            999988888899765644    23 68999987

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Porphyromonas gingivalis [TaxId: 837]

Probab=82.18  E-value=1.7  Score=35.41  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=54.9

Q ss_pred             HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHH
Q 020101          223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTL  302 (331)
Q Consensus       223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~  302 (331)
                      +.|+|+-.+.||++..|=+=+=-.+..-+-...+++|++.+|-|.|+.=-     -+||--.         ..-.|-..|
T Consensus        38 vv~fl~eAA~DP~V~~Ik~TlYR~a~~S~Ii~aLi~AA~nGK~Vtv~vEL-----kARFDEe---------~NI~wa~~L  103 (188)
T d2o8ra3          38 VVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVEL-----KARFDEE---------NNLRLSERM  103 (188)
T ss_dssp             HHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECC-----CSCC-------------CHHHHHHH
T ss_pred             HHHHHHHHhcCCCccEEEEEEEEecCCchHHHHHHHHHHcCCEEEEEEec-----hhhhhHH---------HHHHHhhhH
Confidence            56888888999999998665544444445667899999999999998722     2222111         123577889


Q ss_pred             HHcCCeEeCCHhH
Q 020101          303 REAGVTVVESPAK  315 (331)
Q Consensus       303 ~~aGv~~v~~~~e  315 (331)
                      +++|+-++..+..
T Consensus       104 e~aGv~ViyG~~g  116 (188)
T d2o8ra3         104 RRSGIRIVYSMPG  116 (188)
T ss_dssp             HHHTCEEEECCTT
T ss_pred             HhcCeEEeeCccc
Confidence            9999998866543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.03  E-value=0.77  Score=38.98  Aligned_cols=83  Identities=13%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCcccccCHHHhhhcCCC-CEEEEecChhhHHHHHHHH
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKA-NASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~sl~dl~~~~~i-Dlaii~vp~~~~~~~v~~~  119 (331)
                      +.+.++|.|+|+-+|+.+.+.|.+.|++++ .++.+.  +.     .-...+++..  ++ -+..+.+.++.+.+.++++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r~~--~~-----l~~~~~~~~~--~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVA-IADINL--EA-----ARATAAEIGP--AACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEE-EEESCH--HH-----HHHHHHHHCT--TEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HH-----HHHHHHHhCC--ceEEEEeeCCCHHHHHHHHHHH
Confidence            455677889999999999999999999976 555432  11     1111233322  11 1233567888889999988


Q ss_pred             HHc--CCcEEEEecCCC
Q 020101          120 MEA--ELDLVVCITEGI  134 (331)
Q Consensus       120 ~~~--Gi~~ivi~t~G~  134 (331)
                      .+.  ++..+|+ ..|.
T Consensus        74 ~~~~g~iDilVn-nAg~   89 (256)
T d1k2wa_          74 LDRWGSIDILVN-NAAL   89 (256)
T ss_dssp             HHHHSCCCEEEE-CCCC
T ss_pred             HHHhCCccEEEe-eccc
Confidence            875  5887654 5553

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=81.94  E-value=0.54  Score=40.13  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeC
Q 020101           40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT   74 (331)
Q Consensus        40 ~k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~Vn   74 (331)
                      .+..+|+|.|. |+.|+..++.|.+.|.++++.-|
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeec
Confidence            46778999999 99999999999999999885433

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=81.51  E-value=1.9  Score=34.27  Aligned_cols=36  Identities=11%  Similarity=0.044  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCC
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK   77 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~   77 (331)
                      +.-.|+|+|+ |-+|...++.++..|.+.+..++++.
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccch
Confidence            3456889998 88999999999989986444777765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.09  E-value=1.3  Score=34.32  Aligned_cols=33  Identities=12%  Similarity=0.084  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCC--eEEEEeCCCC
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGGVTPKK   77 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~--~iv~~VnP~~   77 (331)
                      +||+|||+ |+.|..+.-.+...+.  +++ .+|.+.
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di~~   35 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDIAE   35 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECSSH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEE-EEeccc
Confidence            47899998 9999888776665553  455 777554

>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: HemD-like
superfamily: HemD-like
family: HemD-like
domain: Probable uroporphyrinogen-III synthase
species: Thermus thermophilus [TaxId: 274]

Probab=80.92  E-value=13  Score=30.52  Aligned_cols=225  Identities=13%  Similarity=0.128  Sum_probs=116.4

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceecCccccc---CHHHhhhcCCCCEEEEecChhhHHHHHHHH
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN---TVAEAKAETKANASAIYVPPPFAAAAILEA  119 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~G~p~y~---sl~dl~~~~~iDlaii~vp~~~~~~~v~~~  119 (331)
                      +||+|-+.  +--......+.++|++.+.  -|--   ++...|.-.   .+..+.+  +.|. ++||.+..+....+.+
T Consensus         2 ~r~~~~~~--r~~e~~~~lle~~G~~p~~--~P~i---~i~~~p~~~~~~~~~~~~~--~~d~-vvfTS~ngV~~~~~~l   71 (254)
T d1wd7a_           2 VRVAYAGL--RRKEAFKALAEKLGFTPLL--FPVQ---ATEKVPVPEYRDQVRALAQ--GVDL-FLATTGVGVRDLLEAG   71 (254)
T ss_dssp             CEEEECCS--TTHHHHHHHHHHTTCEEEE--CCCB---CSSCEECTTHHHHHHHHHT--CCSE-EEECCHHHHHHHHHHH
T ss_pred             ceeeechh--hhHHHHHHHHHHCCCcEEE--ecce---eeeeCCchhhHHHHHhhcc--CCCE-EEEECHHHHHHHHHHH
Confidence            45666663  3333455667788998442  2221   112222222   1223333  6885 5578888888888877


Q ss_pred             HHcCCcE------EEEecCCCChhHHHHHHHHHhccCCcE--EEccCCCCcccCCCcccccCCCCCCCCCCEEEEecChH
Q 020101          120 MEAELDL------VVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGT  191 (331)
Q Consensus       120 ~~~Gi~~------ivi~t~G~~e~~~~~l~~~a~~~~gi~--viGPnc~Gi~~p~~~~~~~~~~~~~~~G~valisQSG~  191 (331)
                      .+.|...      .-+++=|  +.....    . +++|+.  ++.++         ..-++.... ....++.++-.+|.
T Consensus        72 ~~~~~~~~~~l~~~~i~aVG--~~Ta~a----L-~~~G~~~~~~~~~---------~s~~l~~~~-~~~~~~~l~~~~~~  134 (254)
T d1wd7a_          72 KALGLDLEGPLAKAFRLARG--AKAARA----L-KEAGLPPHAVGDG---------TSKSLLPLL-PQGRGVAALQLYGK  134 (254)
T ss_dssp             HHTTCCCHHHHHTSEEEESS--HHHHHH----H-HHTTCCCSEECSS---------SGGGGGGGC-CCCCEEEEEECSSS
T ss_pred             HHcCccHhHHhcCCeEEEEC--HHHHHH----H-HHcCCCCccCCch---------hHHHHHHHH-hcCCCEEEEecccC
Confidence            7665421      0012223  122222    2 456755  32211         111222111 12234555555554


Q ss_pred             HHHHHHHHHHhCCCCceEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCC--------C
Q 020101          192 LTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT--------E  263 (331)
Q Consensus       192 ~~~~~~~~~~~~g~g~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~--------~  263 (331)
                      -...+.+.+++.|+-+..+..--... .+-...++.+.+.+ ....+|+++-.      ...+.|++.++.        .
T Consensus       135 ~~~~L~~~L~~~G~~v~~v~~Y~t~~-~~~~~~~l~~~l~~-~~~d~V~ftS~------s~v~~f~~~~~~~~~~~~~~~  206 (254)
T d1wd7a_         135 PLPLLENALAERGYRVLPLMPYRHLP-DPEGILRLEEALLR-GEVDALAFVAA------IQVEFLFEGAKDPKALREALN  206 (254)
T ss_dssp             CCHHHHHHHHHTTEEEEEECSEECCB-CHHHHHHHHHHHHT-TCCSEEEESSH------HHHHHHHHHCSCHHHHHHHHH
T ss_pred             CcHHHHHHHHhccCcceEEEEeeeec-cccChHHHHHHHhc-CCceEEEeCCH------HHHHHHHHHHhhhhhhHHHhc
Confidence            44567788888888777766554442 12234445555544 44677777743      467888887641        1


Q ss_pred             CCEEEEEeCCCCCCCCCCCCCcccccCCCCCHHHHHHHHHHcCC--eEe---CCHhHHHHHHHHHHH
Q 020101          264 KPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGV--TVV---ESPAKIGAAMLEVFK  325 (331)
Q Consensus       264 KPVvv~k~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv--~~v---~~~~el~~~~~a~~~  325 (331)
                      +.+.++..|                       ....++++++|+  ..+   .+++.|+++++..++
T Consensus       207 ~~~~v~aIG-----------------------p~Ta~al~~~G~~~~v~~~~~t~~~lv~al~~~l~  250 (254)
T d1wd7a_         207 TRVKALAVG-----------------------RVTADALREWGVKPFYVDETERLGSLLQGFKRALQ  250 (254)
T ss_dssp             TTSEEEEES-----------------------HHHHHHHHHTTCCCSEEETTCCHHHHHHHHHHHHH
T ss_pred             cCCEEEEEC-----------------------HHHHHHHHHcCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence            233333334                       234677888886  333   577788877765443

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.84  E-value=0.44  Score=39.94  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             cccccCCCCeEEEEEcCCCCCCcHHHHHHHHcCC---eEEEEeCCCCC-------Cce-ecCccc---------------
Q 020101           34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKG-------GTE-HLGLPV---------------   87 (331)
Q Consensus        34 l~~ll~~k~~~VaIvGasgk~G~~~~~~l~~~g~---~iv~~VnP~~~-------g~~-i~G~p~---------------   87 (331)
                      |.+++.....+|.|||+ |.-|..+++.|.+.+.   +.+ .+|-...       ... ..|...               
T Consensus         7 ~~~~~~~~~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~i-ainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~   84 (209)
T d2vapa1           7 LLEYLQQTKAKITVVGC-GGAGNNTITRLKMEGIEGAKTV-AINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEE   84 (209)
T ss_dssp             HHHHHHTTCCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEE-EEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHH
T ss_pred             HHHHHhccCCcEEEEEe-CChHHHHHHHHHHcCCCceEEE-EEeCCHHHHhcCCcchhcccccccccccccccchHHHHH
Confidence            56666555567788998 7777778887777654   344 4443210       001 112111               


Q ss_pred             --cc---CHHHhhhcCCCCEEEEec------ChhhHHHHHHHHHHcCCcEEEEecCCCChhHHHH-------HHHHHhcc
Q 020101           88 --FN---TVAEAKAETKANASAIYV------PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVR-------VKAALNNQ  149 (331)
Q Consensus        88 --y~---sl~dl~~~~~iDlaii~v------p~~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~-------l~~~a~~~  149 (331)
                        ..   .+.+..+  +.|+++++.      ..-.++-+.+.|-+.|+..+-+.+--|..|+..+       |.++. +.
T Consensus        85 aa~e~~~~I~~~l~--~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~ivtlPF~~EG~~r~~~A~~~l~~l~-~~  161 (209)
T d2vapa1          85 AAKESAEEIKAAIQ--DSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLK-QH  161 (209)
T ss_dssp             HHHHTHHHHHHHHT--TCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHhcc--CCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEEecchhhhhHHHHHHHHHHHHHHH-Hh
Confidence              11   3444455  789999874      3445666777788899988777888887664332       22222 44


Q ss_pred             CCcEEEccC
Q 020101          150 SKTRLVGPN  158 (331)
Q Consensus       150 ~gi~viGPn  158 (331)
                      .+..++=||
T Consensus       162 ~d~~Ivi~N  170 (209)
T d2vapa1         162 TDTLVVIPN  170 (209)
T ss_dssp             CSEEEEEEG
T ss_pred             hcceEeccc
Confidence            555555555

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=80.68  E-value=0.54  Score=39.57  Aligned_cols=110  Identities=20%  Similarity=0.226  Sum_probs=60.1

Q ss_pred             CCeEEEEEcCCCCCCcHHHHHHHHcCCeEEEEeCCCCCCceec-----------CcccccCHHHhhhcCCCCEEEEecCh
Q 020101           41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPP  109 (331)
Q Consensus        41 k~~~VaIvGasgk~G~~~~~~l~~~g~~iv~~VnP~~~g~~i~-----------G~p~y~sl~dl~~~~~iDlaii~vp~  109 (331)
                      ++.+|+|+|+ |-.|..++.+|...|..-+..||+......-.           |.+-...+.+-..+.++|+-|...+.
T Consensus        29 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          29 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            3567899999 88999999999999986444888876532211           22221123332333456777766665


Q ss_pred             hhHHHHHHHHHHcCCcEEEEecCCCChhHHHHHHHHHhccCCcEEE
Q 020101          110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV  155 (331)
Q Consensus       110 ~~~~~~v~~~~~~Gi~~ivi~t~G~~e~~~~~l~~~a~~~~gi~vi  155 (331)
                      ............ ....++..+..+  +....+.+.+ +++++.++
T Consensus       108 ~~~~~~~~~~~~-~~divid~~d~~--~~~~~in~~~-~~~~ip~i  149 (247)
T d1jw9b_         108 LLDDAELAALIA-EHDLVLDCTDNV--AVRNQLNAGC-FAAKVPLV  149 (247)
T ss_dssp             CCCHHHHHHHHH-TSSEEEECCSSH--HHHHHHHHHH-HHHTCCEE
T ss_pred             hhhhcccccccc-ccceeeeccchh--hhhhhHHHHH-HHhCCCcc
Confidence            444444444333 344433322222  2222334444 56666644

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=80.64  E-value=2.2  Score=36.45  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCCcHHHHHHHHcCCe
Q 020101           43 TRVICQGITGKNGTFHTEQAIEYGTK   68 (331)
Q Consensus        43 ~~VaIvGasgk~G~~~~~~l~~~g~~   68 (331)
                      +||+|.|++|-.|+.+++.|.+.|++
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~   26 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYP   26 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCC
Confidence            47899999999999999999987753