Citrus Sinensis ID: 020118

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGAVKKTVSGQKR
cEEEEEEcccEEEEccccccHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEEEccccEEEEEHHccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccEEccEEEEccccccHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccc
cEEEEEccccEEEEccccccHHHHHHHHHccccEEEEEEcccHHHHEEccHHHHHHccccEEEEcccccccccccccHHccccccccccccccccccHHHHHHHHcccccccccccEEEEEEEccccEEEEEEEEEEcccccccccccccHHccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHccccHHHHHHcccccEEcHHHHEEEccccHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccc
mtviklksgglwvhapiaptKECIQLVKELAApveyiilptfayehkifvgpfsrkfpraqiwvaprqwswplnlplaffGIFRaktlidedlstpwadEIEQKvlsspevgigpyvevafyhkpsrtllvtdavifvprkppeciskESLLASAKNGLAVKILskgkevpqepvvdnpmnqqkgWERMVLQILflgpsnllepnasfAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCdwrfrriipahfaapinasRSDFLAAFAFLDDllgeryvtrpsLSLLFTSLMgkaasyfppddmktlssLDEFLVSVGAVKKTVSGQKR
mtviklksgglwvhapiaPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSkgkevpqepvvdnPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTlvfskvpekvrdWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGavkktvsgqkr
MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSdflaafaflddllGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGAVKKTVSGQKR
***IKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKIL*******************KGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGA**********
MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLL*****************M***ASYFPPDDMKTLSSLDEFLVSVG***********
MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGAVKKTVSGQKR
MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGAVKK*******
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MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGAVKKTVSGQKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
255570220 465 conserved hypothetical protein [Ricinus 1.0 0.711 0.936 1e-180
225452938 452 PREDICTED: uncharacterized protein LOC10 1.0 0.732 0.939 1e-178
224141045 457 predicted protein [Populus trichocarpa] 1.0 0.724 0.927 1e-178
449447406 447 PREDICTED: uncharacterized protein LOC10 1.0 0.740 0.921 1e-175
18395692 455 uncharacterized protein [Arabidopsis tha 1.0 0.727 0.894 1e-172
6714482 449 unknown protin [Arabidopsis thaliana] 1.0 0.737 0.894 1e-172
13878027 450 unknown protein [Arabidopsis thaliana] 1.0 0.735 0.894 1e-172
21593246 455 unknown [Arabidopsis thaliana] 1.0 0.727 0.891 1e-172
297828640 455 hypothetical protein ARALYDRAFT_477426 [ 1.0 0.727 0.894 1e-171
225452940 444 PREDICTED: uncharacterized protein LOC10 0.975 0.727 0.915 1e-171
>gi|255570220|ref|XP_002526070.1| conserved hypothetical protein [Ricinus communis] gi|223534567|gb|EEF36264.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/331 (93%), Positives = 320/331 (96%)

Query: 1   MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRA 60
           MTVIKLKSGGLWVHAPIAPTK+CIQLVKEL APVEYI+LPTFAYEHKIFVGPFSRKFPRA
Sbjct: 132 MTVIKLKSGGLWVHAPIAPTKDCIQLVKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPRA 191

Query: 61  QIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVA 120
           QIWVAPRQWSWPLNLPL FFGIFR+KTL DEDLSTPWADEIEQKVLSSPEVGIGPYVEVA
Sbjct: 192 QIWVAPRQWSWPLNLPLEFFGIFRSKTLKDEDLSTPWADEIEQKVLSSPEVGIGPYVEVA 251

Query: 121 FYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPM 180
           FYHK SRTLLVTDAVIFVPR+P ECISKESLLASAKNGLAVK+LSKGKEVPQEPVVDN M
Sbjct: 252 FYHKRSRTLLVTDAVIFVPRRPLECISKESLLASAKNGLAVKLLSKGKEVPQEPVVDNQM 311

Query: 181 NQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRI 240
           N+QKGWERMVLQILFLGPSNLLEPNASF QMSQKLIVSPIVKTLVFSKVPEKVRDWIDRI
Sbjct: 312 NRQKGWERMVLQILFLGPSNLLEPNASFTQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRI 371

Query: 241 VCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASY 300
           V DWRF+RIIPAHFAAPI A RSD LAAFAFLDDLLG+RYVTRPSLSLLFTSLMGKAASY
Sbjct: 372 VRDWRFKRIIPAHFAAPITAGRSDLLAAFAFLDDLLGDRYVTRPSLSLLFTSLMGKAASY 431

Query: 301 FPPDDMKTLSSLDEFLVSVGAVKKTVSGQKR 331
           FPPDDMKTLSSLD+FLVSVGAVKKTVSG+KR
Sbjct: 432 FPPDDMKTLSSLDQFLVSVGAVKKTVSGRKR 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452938|ref|XP_002284191.1| PREDICTED: uncharacterized protein LOC100268024 isoform 1 [Vitis vinifera] gi|296082978|emb|CBI22279.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141045|ref|XP_002323885.1| predicted protein [Populus trichocarpa] gi|222866887|gb|EEF04018.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449447406|ref|XP_004141459.1| PREDICTED: uncharacterized protein LOC101203804 [Cucumis sativus] gi|449521942|ref|XP_004167988.1| PREDICTED: uncharacterized LOC101203804 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18395692|ref|NP_566129.1| uncharacterized protein [Arabidopsis thaliana] gi|20260330|gb|AAM13063.1| unknown protein [Arabidopsis thaliana] gi|332640082|gb|AEE73603.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6714482|gb|AAF26168.1|AC008261_25 unknown protin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|13878027|gb|AAK44091.1|AF370276_1 unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593246|gb|AAM65195.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828640|ref|XP_002882202.1| hypothetical protein ARALYDRAFT_477426 [Arabidopsis lyrata subsp. lyrata] gi|297328042|gb|EFH58461.1| hypothetical protein ARALYDRAFT_477426 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225452940|ref|XP_002284198.1| PREDICTED: uncharacterized protein LOC100268024 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
TAIR|locus:2102162455 AT3G01060 "AT3G01060" [Arabido 1.0 0.727 0.861 7.4e-153
ASPGD|ASPL0000078194269 AN4711 [Emericella nidulans (t 0.465 0.572 0.285 2.4e-05
TAIR|locus:2102162 AT3G01060 "AT3G01060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
 Identities = 285/331 (86%), Positives = 301/331 (90%)

Query:     1 MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRA 60
             MTVIKLKSGGLWVHAPIAPTKEC+QL+KEL APVEYI+LPTFAYEHKIFVGPFSRKFP+A
Sbjct:   124 MTVIKLKSGGLWVHAPIAPTKECVQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKA 183

Query:    61 QIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVA 120
             Q+WVAPRQWSWPLNLPL FFGIFRAK + D DLSTPWA+EIEQKVLSSPEVGIGPYVEVA
Sbjct:   184 QVWVAPRQWSWPLNLPLEFFGIFRAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVA 243

Query:   121 FYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPM 180
             FYHK SRTLLVTDAVIFVPRKPP  IS ESLLASAKNGLAVKILSKGK++P +PVVDNP 
Sbjct:   244 FYHKRSRTLLVTDAVIFVPRKPPSSISNESLLASAKNGLAVKILSKGKDIPNDPVVDNPN 303

Query:   181 NQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRI 240
              +QKGWERMVLQILFLGPSNLLEPNASFA+MSQKLIVSPIVKTLVFSKVPEKVRDWID I
Sbjct:   304 TRQKGWERMVLQILFLGPSNLLEPNASFARMSQKLIVSPIVKTLVFSKVPEKVRDWIDEI 363

Query:   241 VCDWRFRRIIPAHFAAPINASRSXXXXXXXXXXXXXGERYVTRPSLSLLFTSLMGKAASY 300
               DWRF+RIIPAHF APINA RS             GERYVTRPSLSLLFTSLMGKAASY
Sbjct:   364 ARDWRFKRIIPAHFEAPINAGRSDFLAAFGFLEDLLGERYVTRPSLSLLFTSLMGKAASY 423

Query:   301 FPPDDMKTLSSLDEFLVSVGAVKKTVSGQKR 331
             FPPDDM+TLSSLD+FLVSVGAVKKTVSG+KR
Sbjct:   424 FPPDDMRTLSSLDQFLVSVGAVKKTVSGRKR 454
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0007623 "circadian rhythm" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
ASPGD|ASPL0000078194 AN4711 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
pfam14234314 pfam14234, DUF4336, Domain of unknown function (DU 1e-134
>gnl|CDD|206402 pfam14234, DUF4336, Domain of unknown function (DUF4336) Back     alignment and domain information 
 Score =  384 bits (989), Expect = e-134
 Identities = 145/304 (47%), Positives = 192/304 (63%), Gaps = 44/304 (14%)

Query: 1   MTVIKLKSGGLWVHAPIAPTKECIQLVKELAA---PVEYIILPTF-AYEHKIFVGPFSRK 56
           MTV+KLK GGLWV+AP+APT EC++L++EL A   PV+YI+LPT    EHK+FVGPF+R 
Sbjct: 22  MTVVKLKDGGLWVYAPVAPTPECVRLLEELEAEHGPVKYIVLPTASGLEHKVFVGPFARA 81

Query: 57  FPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPY 116
           FP+AQ+WVAP QWS+PLNLPL++ GI R +TL  +   TPWADE +  VL   ++G+GP+
Sbjct: 82  FPKAQVWVAPGQWSFPLNLPLSWLGIPRTRTLPLDSDGTPWADEFDYAVLGPLDLGLGPF 141

Query: 117 VEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVV 176
            EVAF+HKPS+TLLVTDA++ +P +PPE    + L           +L   ++   EPV 
Sbjct: 142 QEVAFFHKPSKTLLVTDALVSIPEEPPEIFDLDPLP----------LLFHARDRADEPVE 191

Query: 177 DNPMNQQKGWERMVLQILFLGPSNLLEPN-----------------------------AS 207
           D P  ++KGW+R+VL  L+  PS L  P                              AS
Sbjct: 192 DTPEARRKGWQRIVLFALYFRPSALEVPPAPEVLREAFKPGLRSKFGLFPFRWQPGWQAS 251

Query: 208 FAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLA 267
           F  +  +L V+PI++TLVF + PE+V  W DR V  W F RIIPAHF API A+  +F A
Sbjct: 252 FQALRGRLQVAPILQTLVFPRAPEEVLAWADR-VASWDFERIIPAHFDAPIAATPEEFRA 310

Query: 268 AFAF 271
           AFAF
Sbjct: 311 AFAF 314

Length = 314

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
PF14234285 DUF4336: Domain of unknown function (DUF4336) 100.0
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 99.52
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 98.38
PLN02469258 hydroxyacylglutathione hydrolase 98.26
PLN02398329 hydroxyacylglutathione hydrolase 98.15
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 97.98
PLN02962251 hydroxyacylglutathione hydrolase 97.79
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 97.68
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 97.56
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 97.51
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 96.85
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 95.68
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 92.89
KOG0813265 consensus Glyoxylase [General function prediction 88.61
PRK11539755 ComEC family competence protein; Provisional 80.9
>PF14234 DUF4336: Domain of unknown function (DUF4336) Back     alignment and domain information 
Probab=100.00  E-value=1.5e-78  Score=574.35  Aligned_cols=258  Identities=52%  Similarity=1.012  Sum_probs=247.2

Q ss_pred             CEEEEeeCCcEEEEcCCCCCHHHHHHHHHh----cCCeeEEEccCCccccccChhhHHHhCCCCEEEeCCCCCCCCCCCC
Q 020118            1 MTVIKLKSGGLWVHAPIAPTKECIQLVKEL----AAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLP   76 (331)
Q Consensus         1 MTVVRL~~G~L~V~sPva~T~e~~~~L~~L----g~~Vk~IV~Pn~~~eH~l~~~~~~~~fP~A~v~~~pg~~s~p~~l~   76 (331)
                      ||||||++|+|||||||+||+||+++|++|    | +|+|||+||..+|||+|+++|+++||+|+||++||+||+|.+++
T Consensus        22 MTVVrL~~G~L~VhSPvapT~el~~~l~~L~~~~G-~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp  100 (285)
T PF14234_consen   22 MTVVRLSDGGLWVHSPVAPTPELKAELDELEAQHG-PVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLP  100 (285)
T ss_pred             EEEEEECCCCEEEECCCCCCHHHHHHHHHHhccCC-ceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCc
Confidence            999999999999999999999999999999    6 99999999977899999999999999999999999999999999


Q ss_pred             CccccccccCccCCCCCCCCccCCeEEEEecCCCCCCCCcceEEEEEcCCceEEEccccccCCCCCCcccchh--hHHHh
Q 020118           77 LAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKE--SLLAS  154 (331)
Q Consensus        77 l~~~g~~~~~~L~~~~~~~~~~~e~e~~~l~~~~~g~~~~~Ev~ffHk~SrTLivtDll~nlp~~~pe~~~~~--~ll~~  154 (331)
                      ++|.|++.++.+..++...+|++|||+.+|++.++|++.|+|++||||+|||||+||+++|+|+++|++++.+  |||||
T Consensus       101 ~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~nip~~~p~~~~~d~~pll~~  180 (285)
T PF14234_consen  101 LSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFNIPATPPEIFQLDPYPLLFH  180 (285)
T ss_pred             hhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhhCCCCCCcccCCCccchhhc
Confidence            9999999888887666788999999999999999999999999999999999999999999999999999976  77775


Q ss_pred             hhcchhhHhhccCCCCCCCCCCCCccccchhhHHHHHHHHhhCCCCCCCCchhHHhhhhcccccceeeeeecccChHHHH
Q 020118          155 AKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVR  234 (331)
Q Consensus       155 a~~g~~~~~~~~~~~~~~~~~~d~~~~~~~gw~r~~l~~~~f~p~~~~~p~~~f~~~~~~~~v~Pi~~~l~~~~~~~~~r  234 (331)
                      +            ||.+++++.||+++|++||+||+|+++||+|+.+..|+.+|+++.+|++|+||+++|+|+|++++++
T Consensus       181 a------------r~~~~~~~~d~~~~r~~GW~r~~Lf~~y~~P~~l~~~~~sf~~~~~~l~vaPil~~Lv~~r~~~~~~  248 (285)
T PF14234_consen  181 A------------RDRADEPVEDTPENRRKGWQRMVLFALYFRPSALEVPEASFDALSGRLFVAPILQTLVFPRAPEEVL  248 (285)
T ss_pred             c------------cCCCCCCCCCCHHHHhhhHHHHhHhheeeccccccCchhhHHHHhCCceeCcchhheeccCCcHHHH
Confidence            5            5999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCCeEEecCCCccccCcHHHHHHHHHh
Q 020118          235 DWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAF  271 (331)
Q Consensus       235 ~w~~~i~~~Wdf~rIIpaHG~~i~~~~~~~~r~af~~  271 (331)
                      +|+++|+..|+|+||||||++++++.++++||+||+|
T Consensus       249 ~w~~~v~~~w~f~~iip~H~~api~~~~~~~~~af~f  285 (285)
T PF14234_consen  249 AWVDRVASDWDFRRIIPAHFDAPIAATPEEFRAAFSF  285 (285)
T ss_pred             HHHHHHhhhcCCcEEEecccCCcccCCHHHHHHHhCC
Confidence            9999998339999999999999999999999999986

>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 56/386 (14%), Positives = 104/386 (26%), Gaps = 128/386 (33%)

Query: 12  WVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIF--VGPFSRKF-PRAQIWVAPRQ 68
           ++ +PI    E  Q          YI         +++     F++    R Q ++  RQ
Sbjct: 93  FLMSPIK--TEQRQPSMMT---RMYI-----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 69  W--------------------SWPLNLPLA-------------FFGIF--------RAKT 87
                                +W     +A              F IF          +T
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 88  LID--EDLSTPWADEIEQKVLSSPEVGIGPYVEVA---------FYHKP-SRTLLVTDAV 135
           +++  + L      +I+    S  +      + +             KP    LLV   V
Sbjct: 198 VLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 136 IFVPRKPPECISKESLLASAKNGLAVKIL--SKGKEVPQEPVVDNPMNQQKGWERMVLQI 193
                +  +     +        L+ KIL  ++ K+V      D           +    
Sbjct: 254 -----QNAKAW--NAF------NLSCKILLTTRFKQV-----TDFLSAATTTHISLDHHS 295

Query: 194 LFLGPSNLLEPNASFAQMS------QKLIVSPIVKTLVFSKVPEKVRDWIDRI-----VC 242
           + L P  +      +          + L  +P       S + E +RD +        V 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAESIRDGLATWDNWKHVN 351

Query: 243 DWRFRRIIPAHFAA--PINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASY 300
             +   II +      P    R  F     F        ++    LSL++  +       
Sbjct: 352 CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSA----HIPTILLSLIWFDV----IKS 402

Query: 301 FPPDDMKTL--SSL-----DEFLVSV 319
                +  L   SL      E  +S+
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISI 428

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
2p97_A201 Hypothetical protein; putative metal-dependent hyd 99.32
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 98.83
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 98.68
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 98.67
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 98.42
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 98.41
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.4
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 98.4
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 98.37
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 98.31
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 98.3
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 98.28
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 98.24
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 98.17
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 98.17
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 98.16
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.12
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.12
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 98.11
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 98.1
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 98.06
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 98.05
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 98.04
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 98.02
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 97.92
1xm8_A254 Glyoxalase II; structural genomics, protein struct 97.85
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 97.78
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 97.75
4efz_A298 Metallo-beta-lactamase family protein; structural 97.74
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 97.68
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 97.68
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 97.66
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 97.51
3r2u_A466 Metallo-beta-lactamase family protein; structural 97.42
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 96.69
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 96.68
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 95.63
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 96.51
3adr_A261 Putative uncharacterized protein ST1585; quorum se 95.6
3esh_A280 Protein similar to metal-dependent hydrolase; stru 95.37
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 92.99
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 91.25
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 91.0
1ztc_A221 Hypothetical protein TM0894; structural genomics, 89.2
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 85.96
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
Probab=99.32  E-value=1.3e-10  Score=102.41  Aligned_cols=173  Identities=15%  Similarity=0.063  Sum_probs=124.6

Q ss_pred             EEEEeeCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEccCCccccccChhhHHHhCCCCEEEeCCCCCCCCCCCCCcccc
Q 020118            2 TVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFG   81 (331)
Q Consensus         2 TVVRL~~G~L~V~sPva~T~e~~~~L~~Lg~~Vk~IV~Pn~~~eH~l~~~~~~~~fP~A~v~~~pg~~s~p~~l~l~~~g   81 (331)
                      .+|+. +++.+|+.|-+.++++.+.|+++| +|++||++|.  .|...+..++++|+ |+||+.+.....-.+.+     
T Consensus        27 ~li~~-~~~~iliD~g~~~~~~~~~l~~~g-~i~~ii~TH~--DH~gg~~~~~~~~~-a~v~~~~~~~~~~~~~~-----   96 (201)
T 2p97_A           27 FAWIR-PEGNILIDPVALSNHDWKHLESLG-GVVWIVLTNS--DHVRSAKEIADQTY-TKIAGPVAEKENFPIYC-----   96 (201)
T ss_dssp             EEECC-TTCCEEESCCCCCHHHHHHHHHTT-CCSEEECSSG--GGCTTHHHHHHHSC-CEEEEEGGGTTSCSSCC-----
T ss_pred             EEEEe-CCeeEEEECCCCcHHHHHHHHhcC-CCCEEEECCc--hhhhhHHHHHHhcC-CEEEEcHhHhhhhcccC-----
Confidence            46665 467888999888899999999999 9999999997  89999999999996 99999887654321110     


Q ss_pred             ccccCccCCCCCCCCccCCeEEEEecCCCCCCCCcceEEEEEcCCceEEEccccccCCCCCCcccchhhHHHhhhcchhh
Q 020118           82 IFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAV  161 (331)
Q Consensus        82 ~~~~~~L~~~~~~~~~~~e~e~~~l~~~~~g~~~~~Ev~ffHk~SrTLivtDll~nlp~~~pe~~~~~~ll~~a~~g~~~  161 (331)
                         +..+.+ .  ..+..+++.....    +.|...+++++++. ++|+.+|++++-+..   ...              
T Consensus        97 ---~~~~~~-g--~~~~~~~~~~~~p----~gHt~g~~~~~~~~-~~lf~GD~~~~~~~g---~~~--------------  148 (201)
T 2p97_A           97 ---DRWLSD-G--DELVPGLKVMELQ----GSKTPGELALLLEE-TTLITGDLVRAYRAG---GLE--------------  148 (201)
T ss_dssp             ---SEEECT-T--CBSSTTEEEEEEC----SSSSTTEEEEEETT-TEEEECSSEEBSSTT---SCE--------------
T ss_pred             ---ceecCC-C--CEEcceEEEEECC----CCCCCCcEEEEEcC-CEEEECccccccCCC---ccc--------------
Confidence               112211 1  1233367776642    27888999999998 999999999743110   000              


Q ss_pred             HhhccCCCCCCCCCCCCccccchhhHHHHHHHHhhCCCCCCCCchhHHhhhhcccccceeeeeecccChHHHHHHHHHHH
Q 020118          162 KILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIV  241 (331)
Q Consensus       162 ~~~~~~~~~~~~~~~d~~~~~~~gw~r~~l~~~~f~p~~~~~p~~~f~~~~~~~~v~Pi~~~l~~~~~~~~~r~w~~~i~  241 (331)
                                                        +.+     +  .                  +..+.++.+++++++.
T Consensus       149 ----------------------------------~~~-----~--~------------------~~~~~~~~~~sl~~l~  169 (201)
T 2p97_A          149 ----------------------------------ILP-----D--E------------------KLMNKQKVVASVRRLA  169 (201)
T ss_dssp             ----------------------------------ECC-----G--G------------------GCSCHHHHHHHHHHHH
T ss_pred             ----------------------------------cCC-----c--c------------------ccCCHHHHHHHHHHHH
Confidence                                              000     0  0                  0125567788899997


Q ss_pred             cc-CCCCeEEecCCCccccCcHHHHHHHHHhh
Q 020118          242 CD-WRFRRIIPAHFAAPINASRSDFLAAFAFL  272 (331)
Q Consensus       242 ~~-Wdf~rIIpaHG~~i~~~~~~~~r~af~~L  272 (331)
                       + +++++|+|+||+.+..++.+.+++.++-|
T Consensus       170 -~l~~~~~v~pgHg~~~~~~~~~~l~~~~~~~  200 (201)
T 2p97_A          170 -ALEKVEAVLVGDGWSVFRDGRDRLKELVATL  200 (201)
T ss_dssp             -TCTTCCEEEESBBCCBCSCHHHHHHHHHHHH
T ss_pred             -hcCCCCEEEeCCCcceecCHHHHHHHHHHhh
Confidence             7 89999999999998889998888877643
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 99.64
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 98.72
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 98.56
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.4
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.31
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 98.22
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.22
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.11
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.05
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 97.89
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 97.84
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 97.76
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 97.74
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 97.54
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 97.48
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.4
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.15
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 96.31
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 90.68
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 83.97
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Ava3068-like
domain: Hypothetical protein Ava3068
species: Anabaena variabilis [TaxId: 1172]

Probab=99.64  E-value=3.6e-15  Score=130.72  Aligned_cols=173  Identities=13%  Similarity=0.041  Sum_probs=126.2

Q ss_pred             EEEEeeCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEccCCccccccChhhHHHhCCCCEEEeCCCCCCCCCCCCCcccc
Q 020118            2 TVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFG   81 (331)
Q Consensus         2 TVVRL~~G~L~V~sPva~T~e~~~~L~~Lg~~Vk~IV~Pn~~~eH~l~~~~~~~~fP~A~v~~~pg~~s~p~~l~l~~~g   81 (331)
                      ++|+-.+|. +|++|.+++++.+++|+++| +|+|||++|.  .|...+..|+++| +|++|+.+.....-   ..    
T Consensus        26 ~~v~~~~g~-vlIDp~~~~~~~~~~l~~~g-~i~~vi~TH~--DH~g~~~~~~~~~-~a~i~~~~~~~~~~---~~----   93 (200)
T d2p97a1          26 FAWIRPEGN-ILIDPVALSNHDWKHLESLG-GVVWIVLTNS--DHVRSAKEIADQT-YTKIAGPVAEKENF---PI----   93 (200)
T ss_dssp             EEECCTTCC-EEESCCCCCHHHHHHHHHTT-CCSEEECSSG--GGCTTHHHHHHHS-CCEEEEEGGGTTSC---SS----
T ss_pred             EEEEECCee-EEEECCcChHHHHHHHHhcC-CccEEEecCc--cccchHHHHHHhc-CceEEeeccccccc---cc----
Confidence            567775655 57799999999999999999 8999999996  8999999999999 99999987644321   10    


Q ss_pred             ccccCccCCCCCCCCccCCeEEEEecCCCCCCCCcceEEEEEcCCceEEEccccccCCCCCCcccchhhHHHhhhcchhh
Q 020118           82 IFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAV  161 (331)
Q Consensus        82 ~~~~~~L~~~~~~~~~~~e~e~~~l~~~~~g~~~~~Ev~ffHk~SrTLivtDll~nlp~~~pe~~~~~~ll~~a~~g~~~  161 (331)
                       ..+..+.+   ......+++...+.     .|.....+++|.++++|+++|++++.+..   ....             
T Consensus        94 -~pd~~~~~---~~~~~~~~~vi~~p-----GH~~~~~~~~~~~~~~Lf~GD~l~~~~~g---~~~~-------------  148 (200)
T d2p97a1          94 -YCDRWLSD---GDELVPGLKVMELQ-----GSKTPGELALLLEETTLITGDLVRAYRAG---GLEI-------------  148 (200)
T ss_dssp             -CCSEEECT---TCBSSTTEEEEEEC-----SSSSTTEEEEEETTTEEEECSSEEBSSTT---SCEE-------------
T ss_pred             -cceEeccc---ccccceeEEEEEeC-----CcCCCCEeEEecccceEEECCEeeccCCC---ccee-------------
Confidence             01222221   12234567877764     45555667789999999999999865431   0000             


Q ss_pred             HhhccCCCCCCCCCCCCccccchhhHHHHHHHHhhCCCCCCCCchhHHhhhhcccccceeeeeecccChHHHHHHHHHHH
Q 020118          162 KILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIV  241 (331)
Q Consensus       162 ~~~~~~~~~~~~~~~d~~~~~~~gw~r~~l~~~~f~p~~~~~p~~~f~~~~~~~~v~Pi~~~l~~~~~~~~~r~w~~~i~  241 (331)
                                            ..+                   .                   +..+.++.++++++++
T Consensus       149 ----------------------~~~-------------------~-------------------~~~~~~~~~~sl~rl~  168 (200)
T d2p97a1         149 ----------------------LPD-------------------E-------------------KLMNKQKVVASVRRLA  168 (200)
T ss_dssp             ----------------------CCG-------------------G-------------------GCSCHHHHHHHHHHHH
T ss_pred             ----------------------cCC-------------------c-------------------ccchHHHHHHHHHHHh
Confidence                                  000                   0                   0125567888899998


Q ss_pred             ccC-CCCeEEecCCCccccCcHHHHHHHHHhh
Q 020118          242 CDW-RFRRIIPAHFAAPINASRSDFLAAFAFL  272 (331)
Q Consensus       242 ~~W-df~rIIpaHG~~i~~~~~~~~r~af~~L  272 (331)
                       ++ ++++|+|+||..+.+++++.+++..++|
T Consensus       169 -~l~~~~~i~pgHG~~~~~~~~~rl~~l~~~~  199 (200)
T d2p97a1         169 -ALEKVEAVLVGDGWSVFRDGRDRLKELVATL  199 (200)
T ss_dssp             -TCTTCCEEEESBBCCBCSCHHHHHHHHHHHH
T ss_pred             -cCCCCcEEECCCCchHhcCHHHHHHHHHHhh
Confidence             78 6999999999999999999999988765
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure