Citrus Sinensis ID: 020136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcc
Coil and Loop (DISEMBL)
mennakqplisplleeedqeqnrkpqnhllvpeslpavSTAVFtagtddippingvrDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGqaygagqldMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFsgacgptwsgfsWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Flexible Loop (DISEMBL)
mennakqplisplLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAgtddippingVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Low Complexity Region (SEG)
MENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMvlaviaavalllhtilswllilklglglvgaavalnaSWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Disordered region (IsUnstruct)
**********************************LPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSV*****
Disordered Region (DISOPRED)
********************************************************RDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Disordered Region (DISEMBL)
********LISPLLEE*********QNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Disordered Region (DISPRO)
*************************************************IPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.803	0.522	0.428	3e-56
Q9SIA3	476	MATE efflux family protei	no	no	0.803	0.556	0.387	1e-39
Q9SIA5	476	MATE efflux family protei	no	no	0.8	0.554	0.378	3e-39
Q8GXM8	476	MATE efflux family protei	no	no	0.803	0.556	0.368	9e-39
Q9SIA4	476	MATE efflux family protei	no	no	0.803	0.556	0.360	2e-36
Q8RWF5	483	MATE efflux family protei	no	no	0.815	0.556	0.348	9e-33
Q9SIA1	477	MATE efflux family protei	no	no	0.815	0.563	0.344	1e-32
Q9LUH2	477	MATE efflux family protei	no	no	0.881	0.610	0.282	3e-32
Q9LUH3	469	MATE efflux family protei	no	no	0.854	0.601	0.296	3e-31
Q8K0H1	567	Multidrug and toxin extru	yes	no	0.803	0.467	0.322	2e-25

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/266 (42%), Positives = 173/266 (65%), Gaps = 1/266 (0%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E K LW L+G +I +++  Y L  +T +F+GH+ +L LA  S+    I G ++G MLGM 
Sbjct: 51  ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMA 110

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
           SA++T+CGQAYGA Q   MG+  QR+ ++ +  A+ L F+Y ++  IL  +GQ+  I++ 
Sbjct: 111 SAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHE 170

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
              FA  MIPQ++A+AL  PM +FLQAQ+ +  LA ++    LLHT+L+WL+   L  GL
Sbjct: 171 GQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGL 230

Query: 246 VGAAVALNASWWFIDITRLLYIF-SGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
           +GAA+ L+ SWW +     +YI  S  C  TW+GFS +AF  +W + +L++ASAVMLC+E
Sbjct: 231 LGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLE 290

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
           IWY   L++ +G L N  +S+  +SI
Sbjct: 291 IWYNQGLVIISGLLSNPTISLDAISI 316

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/266 (38%), Positives = 150/266 (56%), Gaps = 1/266 (0%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E KK+  LA P   +TI QY L  I+ + +GH   L L+ V++  S      F  M G+ 
Sbjct: 27  ELKKVSRLAVPMATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGLV 86

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
            +LETL GQAYGA Q + MG Y   +    I   +++  ++I+ +++L  +GQ  +IS  
Sbjct: 87  GSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRV 146

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG++A  +IP LFA+A+  P+ +FL AQ  ++ L   A   LL H  + W L+  LGLG 
Sbjct: 147 AGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGS 206

Query: 246 VGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
            GAA+A++ S+WF  +T   Y+ FS +C  T    S     S+  F R  + SA MLC+E
Sbjct: 207 NGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLE 266

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
            W F  LIL +G L+N KL  + LSI
Sbjct: 267 WWLFELLILCSGLLQNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/267 (37%), Positives = 148/267 (55%), Gaps = 3/267 (1%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E K++  LA P   +TI QY L  I+ + +GH   L L+ V++ NS      F  M G+ 
Sbjct: 27  ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
            ALETLCGQAYGA Q + +G Y   +    I    ++  ++++ ++IL  +GQ  EIS  
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRI 146

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG++A W+IP LF  A+  P+ +FL  Q  ++ L   A   LL H ++ W L+   GLG 
Sbjct: 147 AGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGC 206

Query: 246 VGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAF-HSLWSFVRLSLASAVMLCV 303
            G A+A + S+WF  +    Y+ FS +C  T  GF  + F  S+  F +  + SA M+C+
Sbjct: 207 NGPAMATSVSFWFYAVILSCYVRFSSSCEKT-RGFVSRDFVSSIKQFFQYGIPSAAMICL 265

Query: 304 EIWYFMALILFAGYLKNAKLSVAGLSI 330
           E W F  LIL +G L N KL  + LSI
Sbjct: 266 EWWLFEILILCSGLLPNPKLETSVLSI 292

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  160 bits (406), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 149/266 (56%), Gaps = 1/266 (0%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E KK+  LA P   +TI QY L  I+ + +GHI  L LA V++  S      F  M G+ 
Sbjct: 27  ELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGLV 86

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
            ALETLCGQAYGA Q + +G Y   +    I    ++  ++I+ +++L  +GQ  +IS  
Sbjct: 87  GALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRV 146

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG+++ W++P LFA+A+  P+ +FL AQ  ++ L   A   LL H  + W L+  LGLG 
Sbjct: 147 AGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLGS 206

Query: 246 VGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
            GAA+A++ S+WF  +    ++ F  +C  T    S     S+  + +  + SA ++C+E
Sbjct: 207 NGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICLE 266

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
            W F  LIL +G L N KL  + LSI
Sbjct: 267 WWLFELLILCSGLLPNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 1/266 (0%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E KK+  LA P   +TI QY L  I+ + +GH   L L+ V++  S      F  + G+ 
Sbjct: 27  ELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSILFGLA 86

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
            ALETLCGQAYGA Q + +G Y   +    I   +++  ++I+ +++L  +GQ  +IS  
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRV 146

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG++A W+IP LFA+A   P+ +FL AQ  ++ L       LL H  + W  +   GLG 
Sbjct: 147 AGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGS 206

Query: 246 VGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
            GAA+A++ S+WF  +    Y+ +S +C  T    S      +  F    + SA M+C+E
Sbjct: 207 NGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLE 266

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
            W F  LIL +G L N KL  + LSI
Sbjct: 267 WWLFELLILCSGLLPNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  141 bits (355), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 141/270 (52%), Gaps = 1/270 (0%)

Query: 62  EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAM 121
            F  E K L  +A P   +T+ QY L  I+ + +GH S L L+ V++  S      F  M
Sbjct: 26  NFTAELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVM 85

Query: 122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE 181
            G+  ALETLCGQAYGA Q   +G Y   + +  +   +++  ++ +  ++   +GQ  +
Sbjct: 86  FGLAGALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPD 145

Query: 182 ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL 241
           IS  AG++A  +IP L A A+  P+ +FLQ Q  ++ L   A   LL H  +  +L+   
Sbjct: 146 ISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAF 205

Query: 242 GLGLVGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300
           GLG  GAA+A+  S+WF  +   LY+ FS +C  T    S     S+  F +  + SA M
Sbjct: 206 GLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIPSAAM 265

Query: 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
             +E   F  LIL +G L N KL  + LSI
Sbjct: 266 TTIEWSLFEFLILSSGLLPNPKLETSVLSI 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 141/270 (52%), Gaps = 1/270 (0%)

Query: 62  EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAM 121
            F  E K +  +A P   +T+ QY L  I+ + +GH   L L+ V++  +      FG M
Sbjct: 26  NFTAELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCGELQLSGVTLATAFANVSGFGIM 85

Query: 122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE 181
            G+  ALETLCGQAYGA Q   +G Y   + +  +   +++  ++ +  ++   +GQ  +
Sbjct: 86  YGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPD 145

Query: 182 ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL 241
           IS  AG++A  +IP L A A+  P+ +FLQ Q  ++ L   A   LL H  +  +L+   
Sbjct: 146 ISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAF 205

Query: 242 GLGLVGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300
           GLG  GAA+A+  S+WF  +   LY+ FS AC  T    S     S+  F +  + SA M
Sbjct: 206 GLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAM 265

Query: 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
             +E   F  LIL +G L N KL  + LSI
Sbjct: 266 TTIEWSLFELLILSSGLLPNPKLETSVLSI 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 166/326 (50%), Gaps = 35/326 (10%)

Query: 11  SPLLEEE---DQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEG 67
           SPLL++    + E+ R+ ++  LV + +                            ++E 
Sbjct: 8   SPLLDDHVGGEDERGRRSRSSTLVQKVID---------------------------VEEA 40

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENS--VIAGFSFGAMLGMG 125
           K     + P I   +  Y +   + +F+ H+  L LA  ++ NS   ++GF+F  M+G+ 
Sbjct: 41  KAQMIYSLPMILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAF--MVGLS 98

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
            +LETLCGQ +GA +  M+GV+LQ S I+ +  ++++   + F + I  L+ Q   IS  
Sbjct: 99  GSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQ 158

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           A  +  +  P L AY     +++F Q QS I  L + + V L+++   +++L+   GLG 
Sbjct: 159 AALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGF 218

Query: 246 VGAAVALNASWWFIDITRLLYIF-SGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
           +GA +A + S W   ++   Y+  S     TW+GFS ++F  +   + LSL SA M+C+E
Sbjct: 219 IGAPIATSISLWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLE 278

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
            W F  L+  AG + N +++ + ++I
Sbjct: 279 YWAFEILVFLAGVMPNPEINTSLVAI 304

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 154/293 (52%), Gaps = 11/293 (3%)

Query: 47  TDDIPPINGVRDFSREFLK------EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST 100
           + D     G RD S  F++      E K     + P IF  +  Y +   + +F+  +  
Sbjct: 6   SKDDHDGEGGRDKSSTFVQKLIDVEEAKTQIIYSLPMIFTNLFYYCIPLTSVMFASQLGQ 65

Query: 101 LALAAVSVENS--VIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITT 158
           L LA  ++ NS   + GF+F  M G+  ALETLCGQ +GA    M+G++LQ S I+ +  
Sbjct: 66  LELAGATLANSWATVTGFAF--MTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVF 123

Query: 159 ALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218
            +++  ++ F + +  L+ Q   IS  A  +  ++ P L AY     +++F Q Q  +  
Sbjct: 124 TILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTP 183

Query: 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLY-IFSGACGPTWS 277
           L + + + L+++   ++ L+   GLG +GA +A + S W   ++   Y I S     TW+
Sbjct: 184 LVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSISLWIAFVSLGFYVICSDKFKETWT 243

Query: 278 GFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
           GFS ++FH +   + LS+ SA M+C+E W F  L+  AG ++N +++ + ++I
Sbjct: 244 GFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEILVFLAGLMRNPEITTSLVAI 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 5/270 (1%)

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVI--AGFSFGA 120
           FL+E + L  LAGPA    +  + +  I+ VF GH+  L L AV++  +VI   G S G 
Sbjct: 31  FLEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLELDAVTLAIAVINVTGISVGH 90

Query: 121 MLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQ 180
             G+ SA +TL  Q YG+  L  +GV LQR  +IL+        ++I  +QIL L  Q  
Sbjct: 91  --GLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDP 148

Query: 181 EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILK 240
           ++S    T+    IP L A  L    VK+L  Q  ++   +    A L++ + +++ +  
Sbjct: 149 DVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYH 208

Query: 241 LGLGLVGAAVALNASWWFIDITRLLYIF-SGACGPTWSGFSWKAFHSLWSFVRLSLASAV 299
           L LG++G+A+A   S + + I   LYI        TW G+SW+      SF+RL++ S +
Sbjct: 209 LHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSML 268

Query: 300 MLCVEIWYFMALILFAGYLKNAKLSVAGLS 329
           MLC+E W +      +G L   +L    ++
Sbjct: 269 MLCIEWWAYEVGSFLSGILGMVELGAQSIT 298

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
225470571	544	PREDICTED: protein TRANSPARENT TESTA 12-	0.957	0.580	0.704	1e-130
296083409	1152	unnamed protein product [Vitis vinifera]	0.957	0.274	0.704	1e-129
356566004	509	PREDICTED: protein TRANSPARENT TESTA 12-	0.942	0.611	0.694	1e-122
356524020	406	PREDICTED: protein TRANSPARENT TESTA 12-	0.945	0.768	0.694	1e-122
224127997	470	predicted protein [Populus trichocarpa]	0.857	0.602	0.745	1e-121
224106133	512	predicted protein [Populus trichocarpa]	0.960	0.619	0.687	1e-120
449434969	504	PREDICTED: protein TRANSPARENT TESTA 12-	0.954	0.625	0.667	1e-120
356497730	518	PREDICTED: protein TRANSPARENT TESTA 12-	0.957	0.610	0.652	1e-119
255574013	531	multidrug resistance pump, putative [Ric	0.993	0.617	0.676	1e-118
224100161	463	predicted protein [Populus trichocarpa]	0.857	0.611	0.759	1e-117

>gi|225470571|ref|XP_002272174.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 267/328 (81%), Gaps = 12/328 (3%)

Query: 3   NNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSRE 62
            N KQPL+S    ++D+  NR   N LL          A F A   DI PINGVRDF +E
Sbjct: 37  ENGKQPLLSA--RQDDETPNRTAANSLL----------ATFNADESDIGPINGVRDFYKE 84

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAML 122
           F+ E KKLWYLAGPAIF ++CQY LGAITQVF+GH+ TL LAAVSVENSVIAGFSFG ML
Sbjct: 85  FIVESKKLWYLAGPAIFTSLCQYSLGAITQVFAGHVGTLELAAVSVENSVIAGFSFGVML 144

Query: 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEI 182
           GMGSALETLCGQA+GAGQLDM+GVY+QRSW+IL +TA++L F+YIF+ ++L LIGQT+ I
Sbjct: 145 GMGSALETLCGQAFGAGQLDMLGVYMQRSWVILTSTAVLLSFLYIFSARLLKLIGQTEAI 204

Query: 183 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG 242
           S  AG FA WM+PQLFAYA+NFP+ KFLQAQSKIMV+AVIAAV L+LHT+ SWLL+LKL 
Sbjct: 205 SKEAGMFAVWMLPQLFAYAVNFPLAKFLQAQSKIMVMAVIAAVVLVLHTVFSWLLMLKLQ 264

Query: 243 LGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302
            GLVGAAV LNASW  ID+ +LLYIFSG CG  W+GFSWKAF SLW FVRLSLASAVMLC
Sbjct: 265 WGLVGAAVVLNASWVLIDVAQLLYIFSGTCGRAWTGFSWKAFQSLWGFVRLSLASAVMLC 324

Query: 303 VEIWYFMALILFAGYLKNAKLSVAGLSI 330
           +E+WYFMALILFAGYLKNA++SV  LSI
Sbjct: 325 LEVWYFMALILFAGYLKNAEISVDALSI 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083409|emb|CBI23362.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 267/328 (81%), Gaps = 12/328 (3%)

Query: 3   NNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSRE 62
            N KQPL+S    ++D+  NR   N LL          A F A   DI PINGVRDF +E
Sbjct: 645 ENGKQPLLSA--RQDDETPNRTAANSLL----------ATFNADESDIGPINGVRDFYKE 692

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAML 122
           F+ E KKLWYLAGPAIF ++CQY LGAITQVF+GH+ TL LAAVSVENSVIAGFSFG ML
Sbjct: 693 FIVESKKLWYLAGPAIFTSLCQYSLGAITQVFAGHVGTLELAAVSVENSVIAGFSFGVML 752

Query: 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEI 182
           GMGSALETLCGQA+GAGQLDM+GVY+QRSW+IL +TA++L F+YIF+ ++L LIGQT+ I
Sbjct: 753 GMGSALETLCGQAFGAGQLDMLGVYMQRSWVILTSTAVLLSFLYIFSARLLKLIGQTEAI 812

Query: 183 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG 242
           S  AG FA WM+PQLFAYA+NFP+ KFLQAQSKIMV+AVIAAV L+LHT+ SWLL+LKL 
Sbjct: 813 SKEAGMFAVWMLPQLFAYAVNFPLAKFLQAQSKIMVMAVIAAVVLVLHTVFSWLLMLKLQ 872

Query: 243 LGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302
            GLVGAAV LNASW  ID+ +LLYIFSG CG  W+GFSWKAF SLW FVRLSLASAVMLC
Sbjct: 873 WGLVGAAVVLNASWVLIDVAQLLYIFSGTCGRAWTGFSWKAFQSLWGFVRLSLASAVMLC 932

Query: 303 VEIWYFMALILFAGYLKNAKLSVAGLSI 330
           +E+WYFMALILFAGYLKNA++SV  LSI
Sbjct: 933 LEVWYFMALILFAGYLKNAEISVDALSI 960

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566004|ref|XP_003551225.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/314 (69%), Positives = 253/314 (80%), Gaps = 3/314 (0%)

Query: 17  EDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGP 76
           ED E +  P   LL P         VFTA +DDI PI G  DF+REF  E KKLWYLAGP
Sbjct: 2   EDHEDHTHP---LLTPRHHTPDPAVVFTAKSDDIAPIAGAGDFAREFFAESKKLWYLAGP 58

Query: 77  AIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAY 136
           AIF ++CQY LGA+TQVFSGH+STLALAA+S+ENSVIAGF  G   GMGSALETLCGQAY
Sbjct: 59  AIFTSVCQYSLGAVTQVFSGHVSTLALAAISIENSVIAGFCLGITFGMGSALETLCGQAY 118

Query: 137 GAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQ 196
           GAGQ+ M+GVY+QRSW+IL  TA++L  +YIFA  +L  IGQT+ IS AAG FA WMIPQ
Sbjct: 119 GAGQVHMLGVYMQRSWVILNATAILLTLLYIFAAPLLRAIGQTEAISAAAGDFAVWMIPQ 178

Query: 197 LFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASW 256
           LFAYA+N+P  KFLQAQS+IMV+A IAA AL+LHT+ SWLL+LKL  GLVGAAV LNASW
Sbjct: 179 LFAYAVNYPAQKFLQAQSRIMVMAWIAAAALVLHTVFSWLLMLKLRWGLVGAAVVLNASW 238

Query: 257 WFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAG 316
           WFID+ +L+YI  GACG  WSGF++KAFH+LW FVRLSLASAVMLC+E+WYFMALILFAG
Sbjct: 239 WFIDLAQLVYIMGGACGEAWSGFTFKAFHNLWGFVRLSLASAVMLCLEVWYFMALILFAG 298

Query: 317 YLKNAKLSVAGLSI 330
           YLKNA++SV  LSI
Sbjct: 299 YLKNAEVSVDALSI 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524020|ref|XP_003530631.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/314 (69%), Positives = 252/314 (80%), Gaps = 2/314 (0%)

Query: 17  EDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGP 76
           ED +    P   L      P  S  VFTA +DDI PI G  DF+REF  E KKLWYLAGP
Sbjct: 2   EDHDDQTHPL--LTRRHHTPDSSAVVFTATSDDIAPIGGAGDFAREFFAESKKLWYLAGP 59

Query: 77  AIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAY 136
           AIF ++CQY LG +TQVFS H++TLALAAVSVENSVIAGFS G   GMGSALETLCGQAY
Sbjct: 60  AIFTSVCQYSLGGVTQVFSVHVNTLALAAVSVENSVIAGFSLGITFGMGSALETLCGQAY 119

Query: 137 GAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQ 196
           GAGQ+ M+GVY+QRSW+IL  TA++L  +YIFA  +L  IGQT+ IS AAG FA WMIPQ
Sbjct: 120 GAGQVHMLGVYMQRSWVILNATAILLSLLYIFAGHMLRAIGQTEAISAAAGEFALWMIPQ 179

Query: 197 LFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASW 256
           LFAYA+N+P  KFLQAQS+IMV+A IAA AL+LHT+ SWLLIL+ G GLVGAAV LNASW
Sbjct: 180 LFAYAVNYPAQKFLQAQSRIMVMAWIAAAALVLHTLFSWLLILEFGWGLVGAAVVLNASW 239

Query: 257 WFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAG 316
           WFIDI +L+YI SGACG  WSGF++KAFH+LW FVRLSLASAVMLC+E+WYFMAL+LFAG
Sbjct: 240 WFIDIAQLVYIVSGACGEAWSGFTFKAFHNLWGFVRLSLASAVMLCLEVWYFMALVLFAG 299

Query: 317 YLKNAKLSVAGLSI 330
           YLKNA++SV  LSI
Sbjct: 300 YLKNAEVSVDALSI 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127997|ref|XP_002329229.1| predicted protein [Populus trichocarpa] gi|222871010|gb|EEF08141.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/283 (74%), Positives = 244/283 (86%)

Query: 48  DDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVS 107
           DDI PIN VRDF REF +E  KLW+LA PAIF T+CQY LGAITQVF+GH+ TLALAAVS
Sbjct: 1   DDIQPINSVRDFFREFCRESVKLWFLAAPAIFTTVCQYSLGAITQVFAGHVGTLALAAVS 60

Query: 108 VENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYI 167
           +ENSVIAGFSFG MLGMGSALETLCGQA+GAGQLDM+G+Y+QRSW+IL TTAL+L  +YI
Sbjct: 61  IENSVIAGFSFGLMLGMGSALETLCGQAFGAGQLDMLGIYMQRSWLILNTTALLLSLVYI 120

Query: 168 FAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227
           F+ Q+L LIGQT  IS AAG F+ WM+PQLFAYA NFPM KFLQ+QSKIMV+AVI+ V L
Sbjct: 121 FSAQLLKLIGQTASISKAAGMFSIWMLPQLFAYAFNFPMAKFLQSQSKIMVMAVISVVVL 180

Query: 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSL 287
           +LHT+ SWLL++KL  GLVGAAV LNASW  IDI++ +YI SG CG  WSGFSWKAF +L
Sbjct: 181 ILHTVFSWLLMIKLKWGLVGAAVVLNASWVIIDISQFVYIISGTCGRAWSGFSWKAFQNL 240

Query: 288 WSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
           WSFVRLSLASAVMLC+E+WYFMALILFAGYLKNA+++V  LSI
Sbjct: 241 WSFVRLSLASAVMLCLEVWYFMALILFAGYLKNAEVAVDALSI 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106133|ref|XP_002333719.1| predicted protein [Populus trichocarpa] gi|222837995|gb|EEE76360.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/326 (68%), Positives = 262/326 (80%), Gaps = 9/326 (2%)

Query: 5   AKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFL 64
            +QPL+SP  + ++++Q+ +  N  +            FT   DDIP IN VRDFS EF 
Sbjct: 4   GRQPLLSPQNDHQNRDQHLRSTNSSIASS---------FTPDPDDIPLINSVRDFSIEFC 54

Query: 65  KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGM 124
           +E KKLWYLAGPAIF T+CQY LGAITQ+ +GH+ TL LAAVSVENSVIAGFSFG MLGM
Sbjct: 55  RESKKLWYLAGPAIFTTLCQYSLGAITQLLAGHVGTLDLAAVSVENSVIAGFSFGIMLGM 114

Query: 125 GSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISN 184
           GSALETLCGQAYGAGQLDM+G+Y+QRSW+IL  TA++L  +YIFA   L LIGQT EIS 
Sbjct: 115 GSALETLCGQAYGAGQLDMLGLYMQRSWVILNATAVILTLLYIFAGPFLKLIGQTAEISQ 174

Query: 185 AAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG 244
           AAG F+ WMIPQLFAYA+NFP+ KFLQ+QSK+MV+A IAAVAL+ H + SWLL+LKLG G
Sbjct: 175 AAGMFSVWMIPQLFAYAMNFPIAKFLQSQSKMMVMAAIAAVALVFHAVFSWLLMLKLGWG 234

Query: 245 LVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
           LVGAAV LNASWWFI I +LLYIFSG CG  W+G SWKAF +LW FVRLSLASAVMLC+E
Sbjct: 235 LVGAAVVLNASWWFIVIAQLLYIFSGTCGEAWTGLSWKAFQNLWGFVRLSLASAVMLCLE 294

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
           +WYFMALILFAGYLKNA+L+V  LSI
Sbjct: 295 VWYFMALILFAGYLKNAELAVDALSI 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434969|ref|XP_004135268.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 257/325 (79%), Gaps = 10/325 (3%)

Query: 6   KQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLK 65
            QPL+S        E+N+   +    PES    +  +F    DDIPPIN  RDF REF  
Sbjct: 5   SQPLLS------QSEENKLIDS----PESGRKDTKVLFAPDADDIPPINTARDFYREFCI 54

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E KKLWYLA PA+F +ICQY  GAITQ+F+G +ST+ALAAVSVENSVIAGFSFG MLGMG
Sbjct: 55  ELKKLWYLAAPAVFTSICQYSFGAITQLFAGQVSTIALAAVSVENSVIAGFSFGIMLGMG 114

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
           SALETLCGQAYGAGQL MMGVYLQRSW+IL+TTA++L  +YIF+  +L LIGQT EIS A
Sbjct: 115 SALETLCGQAYGAGQLGMMGVYLQRSWVILLTTAVVLTPIYIFSAPLLKLIGQTAEISEA 174

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG  + WMIPQL+AYALNFP+ KFLQAQSK+M ++VI+AVAL+ HT  +WL +LKLG GL
Sbjct: 175 AGVLSIWMIPQLYAYALNFPVSKFLQAQSKMMAMSVISAVALVFHTFFTWLFMLKLGWGL 234

Query: 246 VGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEI 305
            G A+ LNASWW ID  +++YI SG+CG  WSGFSW+AFH+LW FVRLSLASAVMLC+EI
Sbjct: 235 AGGAIVLNASWWVIDFAQIVYILSGSCGRAWSGFSWQAFHNLWGFVRLSLASAVMLCLEI 294

Query: 306 WYFMALILFAGYLKNAKLSVAGLSI 330
           WYFMALILFAGYLKNA++S+  LSI
Sbjct: 295 WYFMALILFAGYLKNAEVSIDALSI 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497730|ref|XP_003517712.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/328 (65%), Positives = 260/328 (79%), Gaps = 12/328 (3%)

Query: 3   NNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSRE 62
           N++ QPL++           R  + H + P   PA +TAVF+AGT DI PI G  DF RE
Sbjct: 7   NSSTQPLLTA----------RADEPHQIHPH--PAETTAVFSAGTPDIAPITGAGDFYRE 54

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAML 122
           F+ E KKLWYLAGPAIF  + +Y LGA TQ+F+GH+ T+ LAAVSVENS+IAGFS+G ML
Sbjct: 55  FMVESKKLWYLAGPAIFSFVSKYSLGAFTQIFAGHVGTIDLAAVSVENSLIAGFSYGIML 114

Query: 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEI 182
           GMGSALETLCGQA GAG+LDM+GVY+QRSW++L++TA +L  +YIFA Q+L LIGQ  EI
Sbjct: 115 GMGSALETLCGQAVGAGKLDMLGVYMQRSWVLLLSTACVLCPLYIFAGQVLKLIGQDTEI 174

Query: 183 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG 242
           S AAGTFA WMIPQLFAYALNFP+ KFLQAQSK+MV+A IA +A++LH +LSWLL++KL 
Sbjct: 175 SEAAGTFAIWMIPQLFAYALNFPVAKFLQAQSKVMVIAAIAGMAMVLHPVLSWLLMVKLE 234

Query: 243 LGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302
            GLVGAAV LN SWWF+ + +L+Y+F G C P W+GFSW+AF SLW F RLSLASAVMLC
Sbjct: 235 WGLVGAAVVLNGSWWFVVVAQLVYVFGGWCWPAWNGFSWEAFRSLWGFFRLSLASAVMLC 294

Query: 303 VEIWYFMALILFAGYLKNAKLSVAGLSI 330
           +E WYFMALILFAGYLKNA++SV   SI
Sbjct: 295 LETWYFMALILFAGYLKNAQVSVDAFSI 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574013|ref|XP_002527924.1| multidrug resistance pump, putative [Ricinus communis] gi|223532699|gb|EEF34481.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 263/334 (78%), Gaps = 6/334 (1%)

Query: 3   NNAKQPLISPLLEEEDQEQNRKPQNHLLVP------ESLPAVSTAVFTAGTDDIPPINGV 56
            +++QPL+S    E     + + ++  L+        +     ++ F   +DDIPPI G 
Sbjct: 2   EDSQQPLLSAHFTEGHNHDSLQSEDRQLLSLSTPNTNTNNNSFSSAFVPDSDDIPPITGF 61

Query: 57  RDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGF 116
           R+F REF +E KKLWYLAGPAIF +ICQY LGA+TQVFSG + TL LAAVSVENSVIAGF
Sbjct: 62  RNFFREFYRESKKLWYLAGPAIFTSICQYSLGAVTQVFSGQVGTLDLAAVSVENSVIAGF 121

Query: 117 SFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLI 176
           SFG MLGMGSALETLCGQAYGA QLDM+G+YLQRSW+IL TTA  L  +Y+FA QIL  I
Sbjct: 122 SFGIMLGMGSALETLCGQAYGAKQLDMLGIYLQRSWVILGTTASFLCLLYVFAAQILKSI 181

Query: 177 GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWL 236
           GQT  IS AAG FA WMIPQLFAYA+NFPM KFLQAQSKIMV+A+IAA AL+LH + SWL
Sbjct: 182 GQTPAISKAAGVFAIWMIPQLFAYAMNFPMAKFLQAQSKIMVMAMIAAAALVLHAVFSWL 241

Query: 237 LILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLA 296
           L+LKLG GLVGAAV LNASWWFID+ + LYI SG CG  W+GFSWKAF +LWSFVRLSLA
Sbjct: 242 LMLKLGWGLVGAAVVLNASWWFIDLAQFLYIISGTCGRAWNGFSWKAFQNLWSFVRLSLA 301

Query: 297 SAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
           SAVMLC+E+WYFMALILFAGYLKNA++SV  LSI
Sbjct: 302 SAVMLCLEVWYFMALILFAGYLKNAEVSVDALSI 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100161|ref|XP_002311767.1| predicted protein [Populus trichocarpa] gi|222851587|gb|EEE89134.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 243/283 (85%)

Query: 48  DDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVS 107
           DDIP IN VRDFSREF +E KKLWYLAGPAIF T+CQY LGAITQ+ +GH+ TL LAAVS
Sbjct: 1   DDIPLINSVRDFSREFFRESKKLWYLAGPAIFTTLCQYSLGAITQLLAGHVGTLDLAAVS 60

Query: 108 VENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYI 167
           VENSVIAGFSFG MLGMGSALETLCGQAYGAGQLDM+G+Y+QRSW+IL  TA++L  +YI
Sbjct: 61  VENSVIAGFSFGIMLGMGSALETLCGQAYGAGQLDMLGLYMQRSWVILNATAVILTLLYI 120

Query: 168 FAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227
           FA   L LIGQT EIS AAG F+ WMIPQLFAYA+NFP+ KFLQAQSK+M +A IAAVA+
Sbjct: 121 FAGPFLKLIGQTAEISQAAGMFSVWMIPQLFAYAMNFPIAKFLQAQSKMMAMAAIAAVAI 180

Query: 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSL 287
           + H + SWLL+LKLG GLVGAAV LNASWWFI I +LLYIFSG CG  W+G SWKAF +L
Sbjct: 181 VFHAVFSWLLMLKLGWGLVGAAVVLNASWWFIVIAQLLYIFSGTCGEAWTGLSWKAFQNL 240

Query: 288 WSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
           W FVRLSLASAVMLC+E+WYFMALILFAGYLKNA+L+V  LSI
Sbjct: 241 WGFVRLSLASAVMLCLEVWYFMALILFAGYLKNAELAVDALSI 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.515	0.34	0.741	1.3e-96
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.651	0.411	0.629	1.1e-95
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.866	0.574	0.636	1.8e-94
TAIR|locus:2028115	515	AT1G23300 "AT1G23300" [Arabido	0.869	0.557	0.592	2.2e-89
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.848	0.578	0.521	1.4e-71
TAIR|locus:2126036	542	AT4G00350 "AT4G00350" [Arabido	0.524	0.319	0.520	2.6e-65
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.533	0.362	0.464	1.3e-57
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.803	0.528	0.428	4.6e-57
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.803	0.523	0.443	5.9e-57
TAIR|locus:2142544	489	AT5G10420 [Arabidopsis thalian	0.469	0.316	0.509	6.1e-56

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 126/170 (74%), Positives = 144/170 (84%)

Query:    48 DDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVS 107
             DDIPPI  V  F REF  E KKLWYLAGPAIF ++ QY LGAITQVF+GHIST+ALAAVS
Sbjct:    27 DDIPPITTVGGFVREFNVETKKLWYLAGPAIFTSVNQYSLGAITQVFAGHISTIALAAVS 86

Query:   108 VENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYI 167
             VENSV+AGFSFG MLGMGSALETLCGQA+GAG+L M+GVYLQRSW+IL  TAL+L  +YI
Sbjct:    87 VENSVVAGFSFGIMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTALILSLLYI 146

Query:   168 FAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217
             FA  IL+ IGQT  IS+AAG F+ +MIPQ+FAYA+NFP  KFLQ+QSKIM
Sbjct:   147 FAAPILASIGQTAAISSAAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIM 196

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 136/216 (62%), Positives = 161/216 (74%)

Query:     2 ENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSR 61
             +N+ K P ++   EEE     +K     L   S  A S   F++   DIPPI+GV DF R
Sbjct:     4 DNDFKDPFLASTEEEELDPATQKALMEYLGVGSR-ASSLVSFSSTAVDIPPISGVGDFVR 62

Query:    62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAM 121
             EF  E +KLW LAGPAIF T+ QY LGA+TQVF+GHISTLALAAVS+ENSVIAGFSFG M
Sbjct:    63 EFRIESRKLWKLAGPAIFTTMSQYSLGAVTQVFAGHISTLALAAVSIENSVIAGFSFGIM 122

Query:   122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE 181
             LGMGSALETLCGQA+GAG++ M+GVYLQRSW+IL  TAL L  +YIFA  IL+ IGQT  
Sbjct:   123 LGMGSALETLCGQAFGAGKVSMLGVYLQRSWVILSVTALFLSLIYIFAAPILTFIGQTAA 182

Query:   182 ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217
             IS  AG F+ +MIPQ+FAYA+NFP  KFLQ+QSKIM
Sbjct:   183 ISAMAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIM 218

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 182/286 (63%), Positives = 213/286 (74%)

Query:    45 AGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALA 104
             +  +DIPPI  V  F +EF  E KKLWYLAGPAIFM+I QY LGA TQVF+GHIST+ALA
Sbjct:    24 SSVEDIPPITTVGGFVKEFNVEVKKLWYLAGPAIFMSITQYSLGAATQVFAGHISTIALA 83

Query:   105 AVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMF 164
             AVSVENSVIAGFSFG MLGMGSALETLCGQA+GAG+L M+GVYLQRSW+IL  TA++L  
Sbjct:    84 AVSVENSVIAGFSFGVMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTAVILSL 143

Query:   165 MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMXXXXXXX 224
             +YIFA  IL+ IGQT  IS+A G F+ +MIPQ+FAYA+N+P  KFLQ+QSKIM       
Sbjct:   144 LYIFAAPILAFIGQTPAISSATGIFSIYMIPQIFAYAVNYPTAKFLQSQSKIMVMAAISA 203

Query:   225 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWWFIDITRLLYIFSGACGPTWSGFSWKAF 284
                                           SWWFI + +L+YIFSG CG  WSGFSW+AF
Sbjct:   204 VALVLHVLLTWFVIEGLQWGTAGLAVVLNASWWFIVVAQLVYIFSGTCGEAWSGFSWEAF 263

Query:   285 HSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
             H+LWSFVRLSLASAVMLC+E+WY MA+ILFAGYLKNA++SVA LSI
Sbjct:   264 HNLWSFVRLSLASAVMLCLEVWYLMAVILFAGYLKNAEISVAALSI 309

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 170/287 (59%), Positives = 206/287 (71%)

Query:    44 TAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLAL 103
             T    D+PPI+G RDF R+F  E KKLW+LAGPAIF + CQY LGA+TQ+ +GH++TLAL
Sbjct:    22 TKSDTDMPPISGGRDFIRQFAAESKKLWWLAGPAIFTSFCQYSLGAVTQILAGHVNTLAL 81

Query:   104 AAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM 163
             AAVS++NSVI+GFS G MLGMGSAL TLCGQAYGAGQL+MMG+YLQRSWIIL + AL+L 
Sbjct:    82 AAVSIQNSVISGFSVGIMLGMGSALATLCGQAYGAGQLEMMGIYLQRSWIILNSCALLLC 141

Query:   164 FMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMXXXXXX 223
               Y+FA  +LSL+GQ+ EIS AAG F+ WMIPQLFAYA+NF   KFLQAQSK++      
Sbjct:   142 LFYVFATPLLSLLGQSPEISKAAGKFSLWMIPQLFAYAVNFATAKFLQAQSKVIAMAVIA 201

Query:   224 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWWFIDITRLLYIFSGACGPTWSGFSWKA 283
                                            SWW ID+T+++YI  G+ G  WSG SW A
Sbjct:   202 ATVLLQHTLLSWLLMLKLRWGMAGGAVVLNMSWWLIDVTQIVYICGGSSGRAWSGLSWMA 261

Query:   284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
             F +L  F RLSLASAVM+C+E+WYFMALILFAGYLKN ++SVA LSI
Sbjct:   262 FKNLRGFARLSLASAVMVCLEVWYFMALILFAGYLKNPQVSVAALSI 308

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 148/284 (52%), Positives = 179/284 (63%)

Query:    51 PPINGVRDFSR----EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAV 106
             P + G +  S+    EF +E K+LW LAGPAIF  I QY LGA+TQ FSG +  L LAAV
Sbjct:    16 PELTGTKSASKVWAKEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAV 75

Query:   107 SVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMY 166
             SVENSVI+G +FG MLGMGSALETLCGQAYGAGQ+ MMG+Y+QRSW+IL TTAL L+ +Y
Sbjct:    76 SVENSVISGLAFGVMLGMGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVY 135

Query:   167 IFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMXXXXXXXXX 226
             I+A  ILS  G+   IS AAG FA WMIPQLFAYA NFP+ KFLQ+Q K++         
Sbjct:   136 IWAPPILSFFGEAPHISKAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVV 195

Query:   227 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSWWFIDITRLLYIFSGACGPTWSGFSWKAFHS 286
                                         SWW I I +LLYI        W+GFS  AF  
Sbjct:   196 LVIHAVFSWLFILYFKWGLVGAAITLNTSWWLIVIGQLLYILITKSDGAWTGFSMLAFRD 255

Query:   287 LWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSI 330
             L+ FV+LSLASA+MLC+E WY M L++  G L N  + V  +SI
Sbjct:   256 LYGFVKLSLASALMLCLEFWYLMVLVVVTGLLPNPLIPVDAISI 299

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 90/173 (52%), Positives = 122/173 (70%)

Query:    44 TAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLAL 103
             T G  D PPI   RD     + E  KLW +A P  F  +C Y + + T +F GHI  L L
Sbjct:    66 TTGDADFPPIQSFRDAKLVCVVETSKLWEIAAPIAFNILCNYGVNSFTSIFVGHIGDLEL 125

Query:   104 AAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM 163
             +AV++  SV++ FSFG +LGM SALETLCGQA+GAGQ+DM+GVY+QRSW+IL+ T++ L+
Sbjct:   126 SAVAIALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLL 185

Query:   164 FMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI 216
              +YI+A  +L L+GQ  EI+  +G F T +IPQ+FA A+NFP  KFLQ+QSK+
Sbjct:   186 PLYIYATPLLILLGQEPEIAEISGKFTTQIIPQMFALAINFPTQKFLQSQSKV 238

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 85/183 (46%), Positives = 117/183 (63%)

Query:    33 ESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQ 92
             ES  A+  +  TA  D      G++D     L E KKLW + GPAIF  +  Y +  ITQ
Sbjct:    11 ESRVALLKSPHTAEEDG----EGLKD---RILVETKKLWQIVGPAIFSRVTTYSMLVITQ 63

Query:    93 VFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSW 152
              F+GH+  L LAA+S+ N+V  GF+FG +LGM SALETLCGQA+GA +  M+GVY+QRSW
Sbjct:    64 AFAGHLGDLELAAISIVNNVTVGFNFGLLLGMASALETLCGQAFGAKKYHMLGVYMQRSW 123

Query:   153 IILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQA 212
             I+L    ++L+  YIF   +L  +GQ  +I+  +G  A W+IP  FA+ L+FP+ +FLQ 
Sbjct:   124 IVLFFCCVLLLPTYIFTTPVLKFLGQPDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQC 183

Query:   213 QSK 215
             Q K
Sbjct:   184 QLK 186

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 114/266 (42%), Positives = 163/266 (61%)

Query:    66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
             E K L++LA PAIF+ +    +  +T++F+GH+ +  LAA S+ NS    F++G +LGMG
Sbjct:    47 EMKFLFHLAAPAIFVYVINNGMSILTRIFAGHVGSFELAAASLGNSGFNMFTYGLLLGMG 106

Query:   126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
             SA+ETLCGQA+GA + +M+GVYLQRS ++LI T L + F+++F+  IL+ +G+ ++++  
Sbjct:   107 SAVETLCGQAHGAHRYEMLGVYLQRSTVVLILTCLPMSFLFLFSNPILTALGEPEQVATL 166

Query:   186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 245
             A  F   MIP +FAYA+NFP+ KFLQ+QS +                             
Sbjct:   167 ASVFVYGMIPVIFAYAVNFPIQKFLQSQSIVTPSAYISAATLVIHLILSWIAVYRLGYGL 226

Query:   246 XXXXXXXXXSWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
                      SWW I + +++YI  S  C  TW GFSWKAF  LW F RLS ASAVMLC+E
Sbjct:   227 LALSLIHSFSWWIIVVAQIVYIKMSPRCRRTWEGFSWKAFEGLWDFFRLSAASAVMLCLE 286

Query:   305 IWYFMALILFAGYLKNAKLSVAGLSI 330
              WY   L+L AG LKN +L++  L+I
Sbjct:   287 SWYSQILVLLAGLLKNPELALDSLAI 312

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 118/266 (44%), Positives = 161/266 (60%)

Query:    66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
             E K L+ LA PA+ + +  Y +   TQ+FSGH+  L LAA S+ N+ I  F++G MLGMG
Sbjct:    52 ESKLLFNLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMG 111

Query:   126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
             SA+ETLCGQAYG  + +M+GVYLQRS ++L  T L+L  +Y+F++ IL  +G++  I++A
Sbjct:   112 SAVETLCGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASA 171

Query:   186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMXXXXXXXXXXXXXXXXXXXXXXXXXXXX 245
             A  F   +IPQ+FAYA NFP+ KFLQ+QS +                             
Sbjct:   172 ASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGL 231

Query:   246 XXXXXXXXXSWWFIDITRLLYIF-SGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
                      SWW I + + +YI  S  C  TW GFS +AF  LWSF +LS ASAVMLC+E
Sbjct:   232 LGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLE 291

Query:   305 IWYFMALILFAGYLKNAKLSVAGLSI 330
              WYF  L+L AG L+N +L++  LSI
Sbjct:   292 TWYFQILVLLAGLLENPELALDSLSI 317

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 79/155 (50%), Positives = 107/155 (69%)

Query:    61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGA 120
             RE   E KK+WY+ GP+IF  +  Y +  ITQ F+GH+  L LAA+S+ N+   GF++G 
Sbjct:    33 REIWIETKKIWYIVGPSIFTGLATYSILIITQAFAGHLGDLELAAISIINNFTLGFNYGL 92

Query:   121 MLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQ 180
             +LGM SALETLCGQA+GA +  M+GVY+QR WIIL    ++L+ MY+FA  IL  IGQ+ 
Sbjct:    93 LLGMASALETLCGQAFGAREYYMLGVYMQRYWIILFLCCILLLPMYLFATPILKFIGQSD 152

Query:   181 EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSK 215
             +I+   GT A W+IP  FA+A  FP+ +FLQ Q K
Sbjct:   153 DIAELTGTIALWVIPVHFAFAFFFPLNRFLQCQLK 187

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	9e-92
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	1e-35
pfam01554	161	pfam01554, MatE, MatE	3e-29
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-26
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-20
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	5e-18
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	1e-17
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-16
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	6e-14
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	6e-12
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-10
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	3e-10
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	4e-09
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	4e-09
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	1e-08
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	2e-08
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	2e-08
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	9e-07
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	1e-06
cd13145	440	cd13145, MATE_like_5, Uncharacterized subfamily of	2e-05
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	3e-05
cd13141	443	cd13141, MATE_like_13, Uncharacterized subfamily o	3e-05
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	3e-05
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	4e-05
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	5e-05
cd13147	441	cd13147, MATE_MJ0709_like, Uncharacterized subfami	6e-05
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	1e-04
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	2e-04
cd13145	440	cd13145, MATE_like_5, Uncharacterized subfamily of	2e-04
cd13128	402	cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu	6e-04
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	7e-04
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	0.002
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	0.002

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  279 bits (717), Expect = 9e-92
 Identities = 117/266 (43%), Positives = 171/266 (64%), Gaps = 2/266 (0%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E KKL  LA P +  ++ QY L  ++ VF GH+  L LAA S+ +S      F  +LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
           SAL+TLCGQA+GA    ++GVYLQR+ +IL+   + +  +++  + IL L+GQ  EI+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG +  W+IP LFAYAL  P+ ++LQAQ  ++ L  I+ VALLL+ +L++LL+  LGLG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 246 VGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
           +GAA+A + S+W I +  LLYI FS     TW GFS +AF     F++L++ SA+MLC+E
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSI 330
            W F  L+L AG L    +++A  SI
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSI 265

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  131 bits (332), Expect = 1e-35
 Identities = 80/245 (32%), Positives = 122/245 (49%), Gaps = 5/245 (2%)

Query: 76  PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135
           PAI   I Q  LG +   F GH+  + LAAVS+ +SV   F F  ++G+G+A   L  QA
Sbjct: 1   PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVF-MFLFSILMGLGTATTALVAQA 59

Query: 136 YGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMI 194
            GAG    +G   Q+S  + L+    +L+  Y F   +LSL+G   E++  A  +   +I
Sbjct: 60  VGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILI 119

Query: 195 PQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-KLG-LGLVGAAVAL 252
             + AY LNF +  FL+ Q        I  +  +++ IL+++LI  K G LG+VGAA+A 
Sbjct: 120 LGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALAT 179

Query: 253 NASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL 311
             S+W + +  L YI  +   G  W G     +  L   ++L L  A  + +E   F  L
Sbjct: 180 VISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239

Query: 312 ILFAG 316
            L   
Sbjct: 240 ALLVA 244

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score =  109 bits (275), Expect = 3e-29
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 76  PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135
           P I   + Q     I  +F GH+  +ALAAVS+ NS IA   F  +LG+ +AL TL GQA
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANS-IASLIFMFLLGLSTALTTLVGQA 59

Query: 136 YGAGQLDMMGVYLQRSWIILITTAL-MLMFMYIFAQQILSLIGQTQEISNAAGTFATWMI 194
            GAG     GV L++  I+ +  +L + + + +F + ILSL  Q +E+   A  +   + 
Sbjct: 60  LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILA 119

Query: 195 PQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWL 236
             +   +L F +  FL+          I  ++LLL+  L++L
Sbjct: 120 LGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score =  108 bits (271), Expect = 2e-26
 Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 6/265 (2%)

Query: 59  FSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSF 118
               F K  K L  LA P I   + Q   G +     GH+   ALAAV + N +      
Sbjct: 8   LEGPFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIF-FLII 66

Query: 119 GAMLGMGSALETLCGQAYGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILSLIG 177
              +G+G+    L  QA GAG        L +   + L+   L+ + +  FA+ +L L+G
Sbjct: 67  AIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLG 126

Query: 178 QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLL 237
              E+   A  +   ++       L+F +   L+          I  +  LL+ +L++LL
Sbjct: 127 APAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLL 186

Query: 238 ILKLG--LGLVGAAVALNASWW--FIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRL 293
           I  L   LG+ GAA+A   + W   + +   L                     L   +RL
Sbjct: 187 IFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRL 246

Query: 294 SLASAVMLCVEIWYFMALILFAGYL 318
            L   +    E   F+ L LF   L
Sbjct: 247 GLPIFLESLSESLGFLLLTLFVARL 271

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 91.0 bits (227), Expect = 2e-20
 Identities = 67/260 (25%), Positives = 115/260 (44%), Gaps = 8/260 (3%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E + L  LA P +   + Q  +G +  V +G +    LAAV++ +S+        M G+ 
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPVFTFGM-GLL 59

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
            A+  L  QA+GAG    +   +++   + +  +L LM +   A  IL L+GQ  E++  
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAI 119

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-KLG-- 242
           A  +   +   +    L   +  FL A  +     VI  +AL+L+  L+++LI  K G  
Sbjct: 120 ARGYLLALAWGIPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLP 179

Query: 243 -LGLVGAAVALNASWWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLSLASA 298
            LG  GA +A    +W + +    YI           ++ F    +  L   +RL L   
Sbjct: 180 ALGGAGAGLATAIVYWLMFLALAFYIRRHKRFRRYRLFARFWRPDWARLKELLRLGLPIG 239

Query: 299 VMLCVEIWYFMALILFAGYL 318
           + +  E+  F A+ L  G L
Sbjct: 240 LTIFFEVSLFAAVALLMGRL 259

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 83.7 bits (208), Expect = 5e-18
 Identities = 61/262 (23%), Positives = 109/262 (41%), Gaps = 16/262 (6%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAML----G 123
           +++  +A P +   + Q  +G   + F G +S +ALAA     S  AG  + A+L    G
Sbjct: 5   REILKIALPLVLSMLSQTVMGFTDRAFLGRLSEVALAA-----SGPAGVLYFAILMLFFG 59

Query: 124 MGSALETLCGQAYGAGQLDMMGVYL-QRSWIILITTALMLMFMYIFAQQILSLIGQTQEI 182
           + S ++    Q  GAG+   +G  L Q  +  L+   L+ +   + A  +  L+G + E+
Sbjct: 60  LSSGVQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEV 119

Query: 183 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-KL 241
                 +    I       L   +  F     +  V+ V   V ++++ +L + LI  KL
Sbjct: 120 QALEVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKL 179

Query: 242 G---LGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAF--HSLWSFVRLSLA 296
           G   +G+ GAA+A   +     +  LL +F       +       F    L   +RL L 
Sbjct: 180 GFPAMGIAGAAIATVIAEAVSLLFFLLLLFRRKNRRRFGLRRAWRFDRELLRRILRLGLP 239

Query: 297 SAVMLCVEIWYFMALILFAGYL 318
           S +   +++  F    L  G L
Sbjct: 240 SGLQFFLDVGAFTVFFLLIGRL 261

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIA-GFSFGAMLGMGS 126
           +++W LA P I   + Q  +G +     G +   A+AAV +   V+         LG G+
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLLLVLNMALGTGT 60

Query: 127 ALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM-FMYIFAQQILSLIGQTQEISNA 185
               L  Q+YGAG  +     L +S ++ +  +L L     +FA+ +L L+G   E+   
Sbjct: 61  V--ALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIAL 118

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKL---- 241
           A T+   ++  +  + L+      L+          I  +  +L+ +L ++LI  L    
Sbjct: 119 ALTYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIFGLWGFP 178

Query: 242 GLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWK-AFHSLWSFVRLSLASAVM 300
           GLG+ GAA+A   S     +  L  +  G      S   ++     +   +R+ L + + 
Sbjct: 179 GLGVAGAALATVISRVVGALLLLFLLLRGRLPIKISFKGFRLDRKIIKKLLRIGLPAGLE 238

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 2/192 (1%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSA 127
           K++  L  P    ++ +     +  +F   + T+ALAA  +    IA F F    G+  A
Sbjct: 241 KEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALR-IASFIFMPPFGIAQA 299

Query: 128 LETLCGQAYGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILSLIGQTQEISNAA 186
           +  L GQ  GAG         + +  + L+   L+ + + +F + I+SL     E+   A
Sbjct: 300 VTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALA 359

Query: 187 GTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLV 246
                          + F +   L+      +  +I+ ++     +    L+    LGL 
Sbjct: 360 VILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLA 419

Query: 247 GAAVALNASWWF 258
           G  +    S   
Sbjct: 420 GVWIGFPLSLIL 431

Length = 455

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 6/250 (2%)

Query: 74  AGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCG 133
           A P +   + Q     +   F G +   ALAAV +    +        +G+      L  
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGL-AFPLIALLIALGVGLSVGTSALIS 59

Query: 134 QAYGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATW 192
           QA GAG  +     L +S  + ++   L+   +  F+  ILSL+G  +E+   A T+ T 
Sbjct: 60  QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTI 119

Query: 193 MIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG---LGLVGAA 249
           +I  L    L   +   LQ +       +I+ ++ LL+ +L  LLI  LG   LG+ GAA
Sbjct: 120 LILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAA 179

Query: 250 VALNASWWFIDITRLLYIFSGACGPTWSGFSWKA-FHSLWSFVRLSLASAVMLCVEIWYF 308
           +A   S+    +  L+Y+  G     +     K     L   +R+ L SA+   +     
Sbjct: 180 LATVISYVIGALLLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGL 239

Query: 309 MALILFAGYL 318
           + ++      
Sbjct: 240 LIIVAIVAAF 249

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 65.6 bits (161), Expect = 6e-12
 Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 6/238 (2%)

Query: 67  GKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAG-FSFGAMLGM 124
           GK     A PAI   +       +  +F GH +  LALAAV++   +I    + G M+G+
Sbjct: 3   GKLFLKFALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGV 62

Query: 125 GSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM-FMYIFAQQILSLIGQTQEIS 183
           G A  +L  +  GAG  +        + ++ +   L+L     +F   +L L+G + E+ 
Sbjct: 63  GGA--SLISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELL 120

Query: 184 NAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGL 243
             A  +   ++       L+  +   L+A+ K  +  +   +  +L+ IL  L I  LGL
Sbjct: 121 PYAVDYLRIILLGAPFTILSSVLNNLLRAEGKPKLAMLGMLIGAVLNIILDPLFIFVLGL 180

Query: 244 GLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWK-AFHSLWSFVRLSLASAVM 300
           G+ GAA+A   +     +  LLY F G      S   +K +   +   + L   S +M
Sbjct: 181 GIAGAALATVIAQLISLLLLLLYFFRGKSLLKLSLLRFKLSLKIIKEILALGFPSFLM 238

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 3/183 (1%)

Query: 90  ITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD-MMGVYL 148
           I          +A AA  + N +   F+F     +G A+ T   Q  GAG+++       
Sbjct: 247 IINSIVNSYGVVASAAYGIANKIN-SFAFLPPSAIGQAVSTFVAQNIGAGKIERAKKGLR 305

Query: 149 QRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVK 208
               I LI   ++++ ++ FA Q+L L     E+      +          + + F    
Sbjct: 306 TGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNG 365

Query: 209 FLQAQSKIMVLAVIAAVALLLHTI-LSWLLILKLGLGLVGAAVALNASWWFIDITRLLYI 267
             +   K     +I+ + L L  I L++LL    GLGL G  +A+  S     I  ++Y 
Sbjct: 366 LFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGLFGIWLAMPISNILSAIICIIYY 425

Query: 268 FSG 270
             G
Sbjct: 426 RKG 428

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 5/172 (2%)

Query: 90  ITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149
           +   F   + T ALAA +   S I+ F F   L +G A + + G   GAG  D     + 
Sbjct: 250 VITAFIARLGTAALAARTYA-SNISMFVFLFSLAIGQATQIIVGHLVGAGDFDEAYKRVL 308

Query: 150 RSWII--LITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMV 207
           +S  I  L++ A+ L+   +F + IL L     EI     T     I      A N  ++
Sbjct: 309 KSLKIGLLVSLAVALLL-ALFREPILGLFTDDPEIIALGKTLLLISILLEPGRAFNIVLI 367

Query: 208 KFLQAQSKIMVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWF 258
             L+A        +I  +++  +   L++LL + LGLGL+G  +A  A  W 
Sbjct: 368 GSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLGLLGVWIAFAADEWV 419

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 14/224 (6%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLA-LAAVSVENSVIAGFSFGAM-LGMG 125
           +++  LA PAI   I    LG +     GH+ + A L AV++  ++     +    L MG
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG 62

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILSLIGQTQEISN 184
           +    L  QA GAG  +     L R+  + L    L+++         L L+G +  ++ 
Sbjct: 63  TT--GLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAVAA 120

Query: 185 AAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG 244
            A  +    I    A  LN+    + +         ++  V  +++ +L  L +  LG G
Sbjct: 121 LARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWG 180

Query: 245 LVGAAVA---------LNASWWFIDITRLLYIFSGACGPTWSGF 279
           + GAA+A         L   W      RLL        P+ +  
Sbjct: 181 VAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSKAAL 224

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 37/198 (18%), Positives = 82/198 (41%), Gaps = 20/198 (10%)

Query: 88  GAITQVFSGHISTLALAAVSVENSVIAG--------------FSFGAMLGMGSALETLCG 133
           G + Q+      T+ ++ +   +  + G                 G  +G+ S    L  
Sbjct: 20  GQLFQLLYNITDTIWISMIDPSDPALVGGIGLVFPLGMIFLALGNGIQVGVSS----LLA 75

Query: 134 QAYGAGQLDMMGVYLQRSWII-LITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATW 192
           +A GA +   +         + L+   ++++  YIFA+ +L L+G    +   A  +  +
Sbjct: 76  RAIGAQRAKELDQAADSGLALALLAATVIVVLGYIFAEPLLQLLGAKGLLLEYALEYFYY 135

Query: 193 MIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVAL 252
            +P +    L   ++  LQ + +   + +   +  +++ +L  +LI    +G+ GAA+A 
Sbjct: 136 SLPGVPFIMLIGVLMGVLQGEGRTKYMMMAMLIGTVVNIVLDPILIFVFDMGVKGAALAT 195

Query: 253 NASWWFIDITRLLYIFSG 270
             +   I +  LLY+F  
Sbjct: 196 VLA-QAISLLYLLYVFLI 212

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 3/214 (1%)

Query: 57  RDFSREFLKEGKKLWYLAGPAIFMTIC-QYPLGAITQVFSGHISTLALAAVSVENSVIAG 115
               +  L+  ++L  +  P+          L  I  + +      ALAA +V    IA 
Sbjct: 208 LSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFR-IAS 266

Query: 116 FSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILS 174
            +F   LG+  A   + GQ  GAG  D        +  I L+  A++ + + +F + ILS
Sbjct: 267 LAFMPALGLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILS 326

Query: 175 LIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS 234
           L     E    A ++   +        + + +    QA  + +   +++ ++  +  +  
Sbjct: 327 LFTNDPEFLELAVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPL 386

Query: 235 WLLILKLGLGLVGAAVALNASWWFIDITRLLYIF 268
             ++  LGLGL G  +AL  S     +  LL+  
Sbjct: 387 AYVLAYLGLGLYGIWLALVISLILAALVLLLFFR 420

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 3/207 (1%)

Query: 52  PINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENS 111
           PI       R   K  KKL  +  PA    + +     +         T ALAA  +   
Sbjct: 210 PIKISFKGFRLDRKIIKKLLRIGLPAGLEQLLRSLGFLVLLAIVASYGTAALAAYQIGLR 269

Query: 112 VIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWII-LITTALMLMFMYIFAQ 170
            I   +F    G   A  TL GQ  GAG  D    Y +R+  + ++   L+ + ++IFA 
Sbjct: 270 -IESLAFMPGFGFSMAASTLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAP 328

Query: 171 QILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LL 229
            + SL     E+      +   +       A++F +   L+         +I  +++ L+
Sbjct: 329 PLASLFTPDPEVIELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLV 388

Query: 230 HTILSWLLILKLGLGLVGAAVALNASW 256
              L++LL   LGLGL G  +A+    
Sbjct: 389 RLPLAYLLGFVLGLGLTGIWLAMFVDT 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 12/243 (4%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGS 126
           K L   A P +   + Q     +  +  G      ALAAVS  + +I   +   M G+  
Sbjct: 3   KTLLLFALPLLLSNLLQQLYNLVDLLIVGQFLGVAALAAVSNGSPIIFLLTAIGM-GLSM 61

Query: 127 ALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM-FMYIFAQQILSLIGQTQEISNA 185
               L  Q  GA   +     +    ++ +   ++L     +FA  IL L+    EI   
Sbjct: 62  GGTILISQYIGAKDEEKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILEL 121

Query: 186 AGTFAT---WMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG 242
           A ++       IP +F Y   +  +      SK  +  VI  +A +L+ IL  L I    
Sbjct: 122 AVSYLRICFLGIPFIFGYNA-YSAILRGLGDSKTPLYFVI--IACVLNIILDLLFIAVFH 178

Query: 243 LGLVGAAVALNASWWFIDITRLLYIF--SGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300
           +G+ GAA+A   +     +  L Y+         +   F +     L   +++ L SA+ 
Sbjct: 179 MGVAGAALATVIAQAISVLLALYYLRKKKLPFKLSLKDFRFD-KEILKEILKIGLPSALQ 237

Query: 301 LCV 303
             +
Sbjct: 238 QSL 240

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 8/190 (4%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVI-AGFSFGAMLGMGS 126
             L+ LA P     + Q  LG I        S  A+AAV V N ++       + +  G+
Sbjct: 3   LSLFALAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFLLILIFSFISTGT 62

Query: 127 ALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNA 185
           ++  L  Q  GA            + +  +   L+   +   F  ++L L+G   E+   
Sbjct: 63  SI--LIAQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLAL 120

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG--- 242
             T+   +   LF  AL+  +   L++  +  +   ++ +  +L+ + ++LLI       
Sbjct: 121 GSTYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSLIMNILNIVGNYLLIFGWFGLP 180

Query: 243 -LGLVGAAVA 251
            LG+ G A++
Sbjct: 181 KLGVAGVAIS 190

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 64/269 (23%), Positives = 114/269 (42%), Gaps = 23/269 (8%)

Query: 61  REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSV-IAGFSFG 119
           +++  E ++L  LA P +   + Q  +G +  V +G +S   LAAV++  S+ +    FG
Sbjct: 5   QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFG 64

Query: 120 AMLGMGSALETLCGQAYGAGQLDMMG-VYLQRSWIILITTALMLMFMYIFAQQILSLIGQ 178
             L +  AL  +  Q  GAG+ + +     Q  W+ L  + L+++ +Y     IL+++  
Sbjct: 65  HGLLL--ALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL 122

Query: 179 TQEISNAAGTF---ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSW 235
             E+++ A  +     W IP    Y     +  F+    K     VI  + LL++  L++
Sbjct: 123 EPEVADIAVGYLHALLWGIPAYLLY---QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNY 179

Query: 236 LLIL-KLG---LGLVGAAVALNASWWFIDITRLLYIFSG----ACGP--TWSGFSWKAFH 285
           + I  K G   LG VG  VA    +W + +  L+YI                   W    
Sbjct: 180 IFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIK 239

Query: 286 SLWSFVRLSLASAVMLCVEIWYFMALILF 314
            L    +L L   + +  E+  F  + L 
Sbjct: 240 RLL---KLGLPIGLAIFFEVSLFAVVTLL 265

Length = 456

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 97  HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL--DMMGVYLQRSWII 154
            I  LAL   ++   +        M G  SA  TL G++ G   L   +    +     +
Sbjct: 257 RIGELALGIYTLVFGIE-NIVLMPMYGYSSAALTLVGESIGKKDLKEALRIGNICLGLGL 315

Query: 155 LITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214
           LI      +    F  +ILSL     E+ N +  +  ++I  LF  ++N      ++A  
Sbjct: 316 LIY-IAAAIVFLAFPYKILSLFTNDPELINYSIPYLIFIIIILFFKSINIVYGFAIRAIG 374

Query: 215 KIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270
               +     +  ++   ++ LLI    LGL G  + L     FID      I   
Sbjct: 375 DTKWMLYTQIIGTIIVVSVALLLIFVFKLGLAGVYITL-----FIDEIIRAIINFL 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM-FMYIFAQQILSLIGQTQ 180
           +G+ +A+ ++ GQ +GA + D +    +++        ++   F+  FA+ ++SL     
Sbjct: 287 IGLNTAVLSIAGQNFGAKKYDRVRETYKKALKYGFVIMVVATVFLLFFAEPLMSLFTNDP 346

Query: 181 EISNAAGTF---ATWMIPQLFAYALNFPMVKFLQAQSK-IMVLAVIAAVALLLHTILSWL 236
            +      +      +    +AY + F  V  LQ   + I  L +     L+   ++ WL
Sbjct: 347 AVIAIGAGYLRIDALI---FYAYVVLFISVSVLQGLKRPIFALWIGLYRQLVGPALVFWL 403

Query: 237 LILKLGLGLVGAAVALNASWWFIDITRLLYI 267
           L+  LGLG+ G    +    W   I  LLY 
Sbjct: 404 LVNVLGLGVTGIWWGIFTIVWSAAIIALLYT 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 440

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAV-SVENSVIAGFSFGAMLGMGS 126
           KK+ ++A P I   +       + + F G IS    +AV +V         F   + +G 
Sbjct: 1   KKINHIAIPLILQNLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPFNTITGFLGSISIGF 60

Query: 127 ALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIF-AQQILSLIGQTQEISNA 185
            +  L  Q+ GA  +  +  Y   S +      ++L  +++F A+ I  L G   +I   
Sbjct: 61  TI--LGSQSVGAKDIKRINDYAISSIVYNSIIGVILFLLWLFGARIIFVLFGVDGQILGY 118

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQA---QSKIMVLAVIAAVALLLHTILSWLLIL-KL 241
           +  +       L    + F     LQ       IM   +I  +   L+ IL ++LI    
Sbjct: 119 SINYVRIFSIYLLLLGILFTFSSILQGIGETKPIMYGGIIKNL---LNVILDYVLIFGNF 175

Query: 242 G---LGLVGAAVA 251
           G   LG++GAA+A
Sbjct: 176 GFPRLGIIGAAIA 188

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 18/195 (9%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSV-IAGFSFGAMLGMGS 126
           K +  +A P     I Q     +   F G +   ALA VS+  +V     +   +L +G+
Sbjct: 11  KHIISMALPIAIGMIIQTLYFLVDLYFVGQLGDAALAGVSLAGNVMFFVMALTQVLNVGT 70

Query: 127 ALETLCGQAYGA-GQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
           A   L   A G   Q +   V+ Q   +  +   ++L+  Y+F +  L  +        A
Sbjct: 71  A--ALVSHAVGRKDQGEANAVFNQSLLLAAVLGLVVLVLGYLFGRLYLETLAADAATVEA 128

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQS-----KIMVLAVIAAVALLLHTILSWLLILK 240
           A T+  W IP L   AL F +     A       K  ++  I AV  LL+ IL+ +LI  
Sbjct: 129 ATTYLYWFIPSL---ALQFILTVLGAALRGTGIVKPFMVIQILAV--LLNIILAPILITG 183

Query: 241 LG----LGLVGAAVA 251
            G    LG+ GA +A
Sbjct: 184 WGTGRALGVAGAGLA 198

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 443

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 13/210 (6%)

Query: 68  KKLWYLAGPAIFMTICQ--YPLGAITQVFSGHISTLALAAV-SVENSVIAGFSFGAMLGM 124
           K L  LA P +  +  Q  Y L      + G + + A+AAV +    V   ++   +  +
Sbjct: 5   KTLLRLALPIMGTSFIQMAYNL--TDMFWVGRLGSDAVAAVGTAGFFVWLAYALALLSKI 62

Query: 125 GSALETLCGQAYGAGQLDMMGVYLQRS-WIILITTALMLMFMYIFAQQILSLIG-QTQEI 182
           G+  +    Q+ GA        Y + +  + L+   L  + + +FA+ ++        E+
Sbjct: 63  GA--QVKVSQSIGAKDEKEARKYARNALQLNLLLGILYGLLLLLFAKPLIGFFNLGDAEV 120

Query: 183 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG 242
            + A T+   +   L    LN        A        +I A+ L+L+ IL  LLI   G
Sbjct: 121 ISLAITYLRIVALGLIFSFLNPVFTGIFNALGDSKTPFIINAIGLVLNIILDPLLIFGFG 180

Query: 243 ----LGLVGAAVALNASWWFIDITRLLYIF 268
               LG+ GAA+A   +   + +  L  + 
Sbjct: 181 PFPALGVAGAALATVLAQAIVFLLFLYALK 210

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 96  GHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM-MGVYLQRSWII 154
           G + T  LAA ++  S I   +F  M+G+G A+ +L GQA GAG+ D+ M V  +   + 
Sbjct: 259 GRLGTTELAATNIVFS-INSLAFLPMIGLGIAVSSLVGQALGAGRPDLAMRVTRRGLKLA 317

Query: 155 LITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214
           L    L+ +   +F + +LS+     + +  A      +         +   + F  A  
Sbjct: 318 LAYMLLLGILFLLFPELLLSIFTPGADFALIAELAVPLLRFVAAYILFDALALVFAGALR 377

Query: 215 K------IMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIF 268
                  +M+  +I A   LL       L++ LG GL GA          + +  LL   
Sbjct: 378 GAGDTRFVMLAELIVAWLYLL---PPAYLLVVLGAGLAGAWTVETVYVIVLALIFLLRFR 434

Query: 269 SGA 271
           SG 
Sbjct: 435 SGK 437

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 121 MLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIF-AQQILSLIGQT 179
           +  + SAL T+ GQ +G G  D M   L  + I+ I   L+L+  Y+  A  + SL    
Sbjct: 284 IFAISSALLTIAGQNWGRGNYDRMLQILMTAVILGIVVVLVLVLGYVLVAPWLFSLFTTV 343

Query: 180 QEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTI-LSWLLI 238
            E+   A      M   L   A++  + +F QA  K     ++  +  +  ++ + +LL 
Sbjct: 344 PEVVAYAVLQVRTMALALPFVAISILVTEFFQAIGKAWPSLLLTLIRHVFLSVPVVYLLA 403

Query: 239 LKLGLGLVG 247
              G G+ G
Sbjct: 404 YVFGKGITG 412

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 99  STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITT 158
            T  +A  +    +++ F+   ++G+ +A+ ++ G AYGA   + +      S  + +  
Sbjct: 262 GTDGVAVYTAGWRIVS-FAIIPLIGIATAVTSVTGAAYGARNYEKLKTAYNYSIKLGLII 320

Query: 159 ALMLM-FMYIFAQQILSLIGQTQEISNAAGTFATWM-IPQLFAYALNFPMV--KFLQAQS 214
            L++   ++IFA QI  L   ++E ++ A     ++ I  LF   + F M+     Q   
Sbjct: 321 ELIIAILIFIFAPQIAYLFTYSEESAHLAPEIVAFLRIMCLFLPFVPFGMMSSSMFQGIG 380

Query: 215 KIMVLAVIAAV-ALLLHTILSWLLILKLGLGLVG 247
           K +   +I  +  L+   + ++L  + LGLGL G
Sbjct: 381 KGLTSLIITILRELIFQVLFAYLFAIVLGLGLFG 414

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 441

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 5/175 (2%)

Query: 99  STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMG--VYLQRSWIILI 156
            T+ +AA  + N +I+   F    G+  A  T+ GQ  GAGQ+D     V      I LI
Sbjct: 268 GTVVVAAYGIGNRIIS-LVFLPAFGLARATSTMVGQNLGAGQIDRAEEIVKKAALLIFLI 326

Query: 157 TTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI 216
                 +  ++FA+ I+ +     E+      F   + P    + L   +    +     
Sbjct: 327 LVIGG-VLAFLFAEPIVRVFINDPEVIKEGADFLRIVAPSFPFFGLFQVINGAFRGSGHT 385

Query: 217 MVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270
           +   +I+ + L ++   L++LL   LGLG+ G  +A+  S     +  L +   G
Sbjct: 386 LTAMIISILRLWVIRIPLAYLLAYVLGLGVTGIWIAMAISNIVAALIALAWFKRG 440

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 93  VFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSW 152
              G+   + +AA  +    I  F F  ++G+   L+ + G  YGAG  D +   L+ + 
Sbjct: 252 TLLGYGGDIGVAAFGIVTR-ILTFLFLPLIGLSQGLQPIIGYNYGAGNYDRVKQALKLAL 310

Query: 153 IILITTALML-MFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQ 211
           I+ +   L+L + + +F +QI+SL     E+   A       +       +N  +  + Q
Sbjct: 311 IVALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILRIFLLAFPLAGINIVLSGYFQ 370

Query: 212 AQSKIMVLAVIAAVALLLHTIL---SWLLILKLGLGLVG 247
           A  K    A  AA+  LL   L     LLIL    GL G
Sbjct: 371 AIGK----AKRAALLSLLRQGLFLIPLLLILPRLFGLDG 405

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 8/164 (4%)

Query: 94  FSGHISTLALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSW 152
           F+G IST ALAA+S+   +   F   A+ +G+G+    L G A GAG       Y  +  
Sbjct: 35  FAGKISTEALAALSLSFPIF--FIIIAIGVGIGTGTTALIGNALGAGDRRKARRYAAQGL 92

Query: 153 IILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQ 211
              I  A++L  +    A  +  L+G   +  + A  +   +      + LNF +   L 
Sbjct: 93  SFGIILAILLTVIGLFAAPPLFRLLGAEGDYLDLALEYMDVIFAGSIFFLLNFGLNGILN 152

Query: 212 AQSKIMVLAVIAAVALLLHTILSWLLI----LKLGLGLVGAAVA 251
           AQ           +   L+ IL  L I        +G+ G A+A
Sbjct: 153 AQGDTKSYRNFLIIGFFLNIILDPLFIFGGGGIPAMGVSGIALA 196

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 440

>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 134 QAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWM 193
           + Y   + ++  +  +    + + +  + + +++FA+ I++L+   +E   AA       
Sbjct: 272 ELYKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLLF-GEEYLPAALVLQILA 330

Query: 194 IPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALN 253
              LF   LN      LQA  K  +   I  +  LL+ IL+ LLI K   G++GAA+A  
Sbjct: 331 WGFLF-IFLNGIFGSILQAIGKQKLTLKILLIGALLNVILNLLLIPK--YGIIGAAIATL 387

Query: 254 ASWWFIDITRLLYI 267
            S + I I  L  +
Sbjct: 388 ISEFIIFILLLYLL 401

Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 402

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSA 127
           K+L  L  P  F  I +    A+  +    + ++ALAA  +  +V +   F    G G A
Sbjct: 216 KRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVES-LLFMPAFGFGIA 274

Query: 128 LETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYI-FAQQILSLIGQTQEISNAA 186
           +  L GQA GAG         + +  + +   L+L  + I F + I  L     E+   A
Sbjct: 275 VSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELA 334

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 94  FSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWI 153
            +  +  + LAA  +        S+  + G   A E L G+A GAG         +R   
Sbjct: 251 LAARLGDVILAANQILLQFWLLSSY-FLDGFAYAAEALVGRALGAGDRKAARRVARRLLQ 309

Query: 154 I-LITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQA 212
             L    L+ +  ++  + I+ L      +   A T+  W+       AL F +      
Sbjct: 310 WGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLALLPPIGALAFVLDGIFIG 369

Query: 213 --QSKIMVLAVIAAVALLLHTILSWLLILKLGL 243
              ++ +  +++ ++A+ L   L +LL+   G 
Sbjct: 370 ATDTRYLRNSMLVSLAVFL--PLLFLLVPLWGN 400

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 9/191 (4%)

Query: 68  KKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVE-NSVIAGFSFGAMLGMGS 126
           + L  LA P I   + Q         + G +   A+AA S+    +    S G   G+  
Sbjct: 11  RTLLKLAWPIIVSNLLQVAYNLADTFWLGRLGADAVAAPSISWPLIFLFISLGG--GLTV 68

Query: 127 ALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQIL-SLIGQTQEISN 184
           A   L  Q  GAG  D       +++  +I  +L+L  + YI ++ +L  LIG  +E+  
Sbjct: 69  AGTALVAQYTGAGDYDKANKVAGQTFSFVIILSLILAVLGYILSRPLLLLLIGAPEEVYP 128

Query: 185 AAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG-- 242
            A  +   +   L    + F     L+          I   ++LL+ IL  LLI  +G  
Sbjct: 129 LALAYLRIIFLGLPFMFIFFVFNSLLRGIGDTKTPMKIMFGSVLLNVILDPLLIFGIGPF 188

Query: 243 --LGLVGAAVA 251
             LG+ GAA+A
Sbjct: 189 PGLGVAGAALA 199

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.96
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.96
PRK00187	464	multidrug efflux protein NorA; Provisional	99.94
PRK01766	456	multidrug efflux protein; Reviewed	99.93
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.93
PRK10189	478	MATE family multidrug exporter; Provisional	99.92
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.92
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.9
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.86
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.86
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.85
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.85
PRK15099	416	O-antigen translocase; Provisional	99.85
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.84
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.83
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.82
PRK15099	416	O-antigen translocase; Provisional	99.8
PRK10459	492	colanic acid exporter; Provisional	99.78
COG2244	480	RfbX Membrane protein involved in the export of O-	99.71
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.6
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.48
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.46
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.43
PRK10459	492	colanic acid exporter; Provisional	99.36
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.28
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.26
COG2244	480	RfbX Membrane protein involved in the export of O-	99.15
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.93
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.92
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.85
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.53
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.65
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.53
COG4267	467	Predicted membrane protein [Function unknown]	95.44

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=6.8e-38  Score=293.27  Aligned_cols=266  Identities=26%  Similarity=0.352  Sum_probs=246.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD  142 (330)
Q Consensus        63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~  142 (330)
                      .++..|+++++++|++++++.+.+++.+|+.++||+|++++++.++++++...+ +.+..+++.+.+++++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            456779999999999999999999999999999999999999999999997766 6789999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020136          143 MMGVYLQRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV  221 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  221 (330)
                      ++++..+++++++++++++..+ .+++.++++.+++.++++.+.+.+|+++..++.|+..++.++.+++|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            9999999999999999977775 577999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCHHhHHHHHHHHHHHHHH
Q 020136          222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS  297 (330)
Q Consensus       222 ~~i~~~~~~i~l~~~li~~-~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~  297 (330)
                      ++++++++|+++|++|++. ++ +|+.|+++||++++++.+++..++++++++  .....+..+++++.+++++++|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 67 999999999999999999999999988653  2332334355678999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136          298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~  329 (330)
                      ++++..+...+.+.+.+.+++|+..+|||+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~  282 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTVALAAYGIA  282 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            99999999999999999999999999999875

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=5.9e-35  Score=275.26  Aligned_cols=267  Identities=21%  Similarity=0.201  Sum_probs=239.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      +++++.|+++++++|.++++++..+.+.+|+.++|++|++++++++++.++.+.+ ..+..|++++.+++++|++|++|+
T Consensus         4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence            3456789999999999999999999999999999999999999999999997765 667899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 020136          142 DMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV  221 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  221 (330)
                      +++++..++++.+..+++++..++.++.++++.+++.|+|+.+.+.+|++++.++.|+..+....++++|+.||++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~  162 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV  162 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999998888776666779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcCCCC--C-CCCCCHHhHHHHHHHHHHH
Q 020136          222 IAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGACGP--T-WSGFSWKAFHSLWSFVRLS  294 (330)
Q Consensus       222 ~~i~~~~~~i~l~~~li~~~----~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~  294 (330)
                      .++++.++|+++||+|++..    ++|+.|+++|+.+++++..+...+++++++.+.  + ++++.++.++.+|++++++
T Consensus       163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg  242 (464)
T PRK00187        163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG  242 (464)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence            99999999999999999853    489999999999999988887777766533221  1 2222334567899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136          295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       295 ~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~  329 (330)
                      +|.++++..+...+.+.+.+++++|+.++||++++
T Consensus       243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~  277 (464)
T PRK00187        243 LPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIA  277 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999999999999999999999874

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=1.4e-34  Score=270.53  Aligned_cols=264  Identities=19%  Similarity=0.222  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcch
Q 020136           65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM  143 (330)
Q Consensus        65 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~-g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~  143 (330)
                      ++.|++++++.|.+++++++.+++.+|+.++|++ |+.++++++++.++.+.. ..+..+++.+.+++++|++|+||+++
T Consensus         6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~   84 (441)
T PRK10367          6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA   84 (441)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            4468899999999999999999999999999997 677899999999996665 66888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136          144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI  222 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  222 (330)
                      +++..++++.+++++++++.++ ..+.++++.+++.|+|+.+.+.+|++++.++.|+..+..+.++++|+.||++.+++.
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~  164 (441)
T PRK10367         85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL  164 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            9999999999999999888754 668899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCHHh-HHHHHHHHHHHHHHHHH
Q 020136          223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKA-FHSLWSFVRLSLASAVM  300 (330)
Q Consensus       223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~p~~~~  300 (330)
                      +++++++|+++|+++++.+++|+.|+++||.+++++.+++..++++++++.++++ +..++. .+.+|++++++.|..++
T Consensus       165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~  244 (441)
T PRK10367        165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR  244 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence            9999999999999999988899999999999999999988877776532211111 101112 24689999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136          301 LCVEIWYFMALILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       301 ~~~~~~~~~~~~~~~~~lg~~~laa~~i~  329 (330)
                      ...+...+.+.+.+++++|+.++|||+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~G~~alAa~~I~  273 (441)
T PRK10367        245 SLLLQLCFGAITVLGARLGSDIIAVNAVL  273 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999999999875

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=2.5e-33  Score=264.55  Aligned_cols=266  Identities=17%  Similarity=0.227  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD  142 (330)
Q Consensus        63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~  142 (330)
                      .-+..|+++++++|.++++++..+++.+|+.++|++|++++|+++++.++.... +.+..|++++.+++++|++|++|++
T Consensus        24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~  102 (478)
T PRK10189         24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRR  102 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            335689999999999999999999999999999999999999999999996554 7789999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 020136          143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL  219 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  219 (330)
                      ++++..++++.++++++++.+++ +++.++++.+++  .|+|+.+.+..|+++..++.|+..+....++++||.||++.+
T Consensus       103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~  182 (478)
T PRK10189        103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP  182 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence            99999999999999999988865 668899999984  699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCC-CCHHhHHHHHHHH
Q 020136          220 AVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGAC---GPTWSG-FSWKAFHSLWSFV  291 (330)
Q Consensus       220 ~~~~i~~~~~~i~l~~~li~~~----~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~l  291 (330)
                      +++++++.++|+++++++++.+    ++|+.|+|+|+.+++++..++..+++.++++   +.++++ +...+++.+++++
T Consensus       183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il  262 (478)
T PRK10189        183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVM  262 (478)
T ss_pred             HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHH
Confidence            9999999999999999999853    7999999999999999999887776654322   111222 1123567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136          292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~  329 (330)
                      ++|+|.+++.......+.+.+.+++++|+.++|||+++
T Consensus       263 ~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~  300 (478)
T PRK10189        263 GIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIA  300 (478)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=1.4e-32  Score=258.69  Aligned_cols=264  Identities=17%  Similarity=0.197  Sum_probs=237.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcch
Q 020136           65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM  143 (330)
Q Consensus        65 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~  143 (330)
                      +..|++++++.|.+++++.+.+++.+|+.++|+ .|+++++++++++++.... ..+..+++.+.+++++|++|+||+|+
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~   87 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK   87 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence            456899999999999999999999999999999 5999999999999996655 56788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136          144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI  222 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  222 (330)
                      +++..++++.++++++++.+++ ++++++++.+++.|+++.+.+.+|+++..++.|+..+.....+++|+.||++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~  167 (453)
T PRK09575         88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL  167 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            9999999999999999988865 668999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHH
Q 020136          223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKAFHSLWSFVRLSLASAVML  301 (330)
Q Consensus       223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~p~~~~~  301 (330)
                      ++++.++|+++|+++++.+++|+.|+++|+.+++++..++..+++++++.+.+++ +..+.+++.+|+++++|+|..++.
T Consensus       168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~  247 (453)
T PRK09575        168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY  247 (453)
T ss_pred             HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence            9999999999999999988899999999999999999998888777644433332 111335667899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCc-HHHhhhccc
Q 020136          302 CVEIWYFMALILFAGYLKN-AKLSVAGLS  329 (330)
Q Consensus       302 ~~~~~~~~~~~~~~~~lg~-~~laa~~i~  329 (330)
                      ..+...+.+.+.+.+++|+ .++|+++++
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~lAa~~i~  276 (453)
T PRK09575        248 LYGSFVVALHNRLFMEYGSALTVGAYAIV  276 (453)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            9999999999999999996 579998764

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=4.8e-32  Score=255.61  Aligned_cols=269  Identities=21%  Similarity=0.337  Sum_probs=240.0

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136           60 SREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG  139 (330)
Q Consensus        60 ~~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~  139 (330)
                      .+..++.+|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++.... ..+..|++.+.+|.++|++|++
T Consensus         4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~   82 (456)
T PRK01766          4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAG   82 (456)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence            455677889999999999999999999999999999999999999999999985544 5678899999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 020136          140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV  218 (330)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~  218 (330)
                      |++++++..++++.+.++++++++++ +++.++++.+++.|+++.+.+..|+++.+++.|+..+..++++++|+.||++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~  162 (456)
T PRK01766         83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP  162 (456)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            99999999999999999999887765 55778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh----cCCccchHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCCHHhHHHHHHHH
Q 020136          219 LAVIAAVALLLHTILSWLLILK----LGLGLVGAAVALNASWWFIDITRLLYIFSGACG---PTWSGFSWKAFHSLWSFV  291 (330)
Q Consensus       219 ~~~~~i~~~~~~i~l~~~li~~----~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l  291 (330)
                      +++.++++.++|+++++++++.    .++|+.|+++|+.+++++..++..+++++++..   +.+.++.++.++.+|+++
T Consensus       163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il  242 (456)
T PRK01766        163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL  242 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence            9999999999999999999864    248999999999999999999888887654321   122333344567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136          292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~  329 (330)
                      ++++|..++...+...+.+.+.+++++|+.++|+++++
T Consensus       243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~  280 (456)
T PRK01766        243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIA  280 (456)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.96  E-value=9.3e-28  Score=223.75  Aligned_cols=267  Identities=45%  Similarity=0.742  Sum_probs=253.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCC
Q 020136           61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ  140 (330)
Q Consensus        61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~  140 (330)
                      +....+.|++++++.|.++..+.++....+++.++||+|+.++++.+++++..+...+.+..|+..+..++++|++|+++
T Consensus        21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~  100 (473)
T KOG1347|consen   21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK  100 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence            33378889999999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      .+......+++..+....+++.+.++++.++++..+++++++...+..|.++.+++.+..........++|+++++....
T Consensus       101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~  180 (473)
T KOG1347|consen  101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL  180 (473)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136          221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM  300 (330)
Q Consensus       221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~  300 (330)
                      ++.....++|++++|++++..++|..|++++..+++++...+..+|.........|..++++ ++.++++++++.|++++
T Consensus       181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m  259 (473)
T KOG1347|consen  181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM  259 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence            99999999999999999999999999999999999999999999998875577889988888 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCc--HHHhhhcc
Q 020136          301 LCVEIWYFMALILFAGYLKN--AKLSVAGL  328 (330)
Q Consensus       301 ~~~~~~~~~~~~~~~~~lg~--~~laa~~i  328 (330)
                      .++|||.|+++.++.+.+++  .++++++|
T Consensus       260 iclE~w~~eil~l~~G~l~np~~~~~~~sI  289 (473)
T KOG1347|consen  260 ICLEWWAYEILVLLAGLLGNAKVSLASQSI  289 (473)
T ss_pred             eHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            99999999999999999997  44555544

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.96  E-value=8.1e-27  Score=211.94  Aligned_cols=253  Identities=32%  Similarity=0.531  Sum_probs=225.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHH
Q 020136           76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL  155 (330)
Q Consensus        76 P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  155 (330)
                      |.++++++..+...+|+.+++++|++++++++++.++.... ..+..+++++..|.+++++|++|+|+.++..+.++.+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999886655 66889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 020136          156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS  234 (330)
Q Consensus       156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~  234 (330)
                      .+++++.+++ +++++++..+++.+++..+.+..|+++++++.++.+++.+..+++|+.||++.+++.++++.+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            9999988864 668899999988788889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hcC-CccchHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136          235 WLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIFSGA-CGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL  311 (330)
Q Consensus       235 ~~li~-~~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~  311 (330)
                      +++++ .++ +|+.|+++++.+++++..++..+++++++ .+.+|+...+...+.+|++++++.|..+.++..++.+.+.
T Consensus       160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~  239 (342)
T TIGR00797       160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL  239 (342)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            99998 677 88999999999999999998887776522 2223333233456789999999999999999999999999


Q ss_pred             HHHhhcCCcHHHhhhccc
Q 020136          312 ILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       312 ~~~~~~lg~~~laa~~i~  329 (330)
                      +.+++.+|+.++++++++
T Consensus       240 ~~i~~~~g~~~v~~~~~a  257 (342)
T TIGR00797       240 ALLVARLGSIALAAHQIA  257 (342)
T ss_pred             HHHHHHcCcHHHHHHHHH
Confidence            999999999988887653

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.94  E-value=1e-24  Score=205.76  Aligned_cols=208  Identities=19%  Similarity=0.166  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCC
Q 020136           61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ  140 (330)
Q Consensus        61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~  140 (330)
                      +.+++..|+++++++|.++.++.+.....+|+.+++++|++++++++++.++.... +.+..|++.+.+++++|++|+||
T Consensus       229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~  307 (464)
T PRK00187        229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR  307 (464)
T ss_pred             CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34566789999999999999999999999999999999999999999999996654 77899999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136          141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ--TQ---EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS  214 (330)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g  214 (330)
                      ++++++..+.++.++.+.+++.+++ +++.+++.+++..  ++   |+.+.+..|+++.+++.++.+++.+..+++||.|
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G  387 (464)
T PRK00187        308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK  387 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence            9999999999999999999888764 6688999999853  44   7889999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          215 KIMVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       215 ~~~~~~~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      |++.++++++++. ++++++++++.+.+++|+.|+|+++.+++++..++....+++
T Consensus       388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~  443 (464)
T PRK00187        388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW  443 (464)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998 999999999999889999999999999999998877666644

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.93  E-value=6.3e-24  Score=200.40  Aligned_cols=207  Identities=20%  Similarity=0.170  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      .+++..|+++++++|.++++..+.+...+++.+++++|++++++++++.++.+.. +.+..|++.+.++.++|++|+||+
T Consensus       233 ~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~  311 (456)
T PRK01766        233 PDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRT  311 (456)
T ss_pred             CCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH
Confidence            3456789999999999999999999999999999999999999999999996665 668899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      +++++..+.++.++..++++.+++ +.+.+++..+|..|+++.+.+..|+++..++.++.+++.+..+++||.||++.++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  391 (456)
T PRK01766        312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF  391 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence            999999999999999999988764 6689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      +.++++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++
T Consensus       392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~  441 (456)
T PRK01766        392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK  441 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988 889999999998888999999999999999999988777765

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.93  E-value=1.5e-23  Score=196.70  Aligned_cols=213  Identities=20%  Similarity=0.227  Sum_probs=198.4

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhc
Q 020136           58 DFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYG  137 (330)
Q Consensus        58 ~~~~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g  137 (330)
                      +..+++++..|++++++.|..+.+++......+.+.+++++|++.+|+++++.++.+.. +.+..|++++++++++|++|
T Consensus       231 ~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~G  309 (455)
T COG0534         231 KLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLG  309 (455)
T ss_pred             hccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence            34466778899999999999999999999999999999999999999999999996665 77999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 020136          138 AGQLDMMGVYLQRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI  216 (330)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  216 (330)
                      ++|.|++++..+.+..++.++++...+ ++++++++..+|..|+++.+.+..++++..+..++.+.+.+..+++||.||+
T Consensus       310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~  389 (455)
T COG0534         310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA  389 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999998886 4779999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020136          217 MVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC  272 (330)
Q Consensus       217 ~~~~~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~  272 (330)
                      +.+++.++++. ++.+++.+++.+.+ +|..|.|++...++.+..+...++++++++
T Consensus       390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~  445 (455)
T COG0534         390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW  445 (455)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999988 77899999998876 899999999999999999999888877443

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.92  E-value=5.7e-23  Score=194.21  Aligned_cols=211  Identities=15%  Similarity=0.136  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      .+++.+|++++++.|..+......+...+.+.+++++|+.++|+++++.++.+.. +.+..|++++.+++++|++|+||.
T Consensus       253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~  331 (478)
T PRK10189        253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI  331 (478)
T ss_pred             CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence            3567889999999999999999999999999999999999999999999996654 678999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      +++++..+.+..++.+.++.++++ +++++++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.++
T Consensus       332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~  411 (478)
T PRK10189        332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM  411 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence            999999999999999998888865 6689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 020136          221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACG  273 (330)
Q Consensus       221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~  273 (330)
                      ++++++. ++.+++.+++.+.+++|+.|+|++..+++.+..++..+.+++++++
T Consensus       412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~  465 (478)
T PRK10189        412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWL  465 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence            9999988 8889999998887889999999999999999999887777664443

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.92  E-value=9.7e-23  Score=191.92  Aligned_cols=206  Identities=13%  Similarity=0.167  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136           61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG  139 (330)
Q Consensus        61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~-~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~  139 (330)
                      +.+++..|++++++.|..+++....+...+.+.+++++|+ .++|+++++.++.... +.+..|++.+.+++++|++|+|
T Consensus       227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~  305 (453)
T PRK09575        227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGAR  305 (453)
T ss_pred             CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCC
Confidence            4556778999999999999999999999999999999885 5899999999996654 6789999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 020136          140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ-TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM  217 (330)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~  217 (330)
                      |+|++++..+.++.+++..+++.+++ +.+.+++..+|+. |+|+.+.+..|+++..++.++.+++.+..+++||.||++
T Consensus       306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~  385 (453)
T PRK09575        306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG  385 (453)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999999988865 6689999999984 789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      .+++.++...++++++.+++...  +|+.|+|+++.+++++..++..+++++
T Consensus       386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~  435 (453)
T PRK09575        386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR  435 (453)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999998888899999888765  799999999999999998888777765

>TIGR01695 mviN integral membrane protein MviN

Probab=99.90  E-value=2.1e-21  Score=185.46  Aligned_cols=232  Identities=19%  Similarity=0.153  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD  142 (330)
Q Consensus        63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~  142 (330)
                      +++..|++++++.|..+++....+...+|+.+.+.+|+.++++|+.+.++.+.....+..+++++..|.+++++|+||++
T Consensus       218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~  297 (502)
T TIGR01695       218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN  297 (502)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            34567999999999999999999999999988666999999999999999776533467889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 020136          143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM  217 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~  217 (330)
                      +.++.++++..+...++++.+++ .+++++++.++.+    |++..+.+..++++++++.++.+++......+++.||++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~  377 (502)
T TIGR01695       298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR  377 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence            99999999999999999998865 6689999988755    567788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHH
Q 020136          218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLAS  297 (330)
Q Consensus       218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~  297 (330)
                      .+++.++++.++|+++++++++.  +|..|+|+|+.+++.+..++..++++|+.....       ..+..+.+.|...++
T Consensus       378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~as  448 (502)
T TIGR01695       378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGIL-------PFGVLKVLAKLVIAS  448 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-------chHHHHHHHHHHHHH
Confidence            99999999999999999999876  799999999999999999988877776322111       123344455555555


Q ss_pred             HHHHHH
Q 020136          298 AVMLCV  303 (330)
Q Consensus       298 ~~~~~~  303 (330)
                      .++...
T Consensus       449 ~~m~~~  454 (502)
T TIGR01695       449 AIIGGV  454 (502)
T ss_pred             HHHHHH
Confidence            555443

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.86  E-value=1.7e-19  Score=169.03  Aligned_cols=199  Identities=16%  Similarity=0.134  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchH
Q 020136           65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM  144 (330)
Q Consensus        65 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~  144 (330)
                      +..|++++++.|..+++.+......+-+.+++++|++++|+++++.++.+.. +.+..|++++.+++++|++|+||.+++
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            4689999999999999999999999999999999999999999999995554 779999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chhHHH
Q 020136          145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS---KIMVLA  220 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~  220 (330)
                      ++..+.+..++.+++++.+++ +++++++..+|..|+|+.+.+..++++.++..+.........++++|.+   |++.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~  387 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            999999999999999988865 6688999999999999999999999999876443334444444455555   599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 020136          221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG  270 (330)
Q Consensus       221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~  270 (330)
                      ++++++..+    .++..+  ++|..|.|++..+++.+..+++.+.++++
T Consensus       388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~  431 (441)
T PRK10367        388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRRH  431 (441)
T ss_pred             HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998887542    111222  37999999999999999999888777664

>TIGR01695 mviN integral membrane protein MviN

Probab=99.86  E-value=9.3e-19  Score=167.23  Aligned_cols=253  Identities=14%  Similarity=0.076  Sum_probs=198.4

Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHH-HHHHHHHHHHHHHHHHHH-HHHhhhHHhHHHhhhcCCCcchHHH
Q 020136           70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLAL-AAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGV  146 (330)
Q Consensus        70 il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~-aa~~~~~~i~~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~  146 (330)
                      +.|-+.-..+.++.+.+.+++|+.++++ +|+++. ++++.+.++.+.+..... .|++++..+...++.+++  |++++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~   79 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR   79 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence            4677788889999999999999999999 999999 899999999766533233 467888777776654333  57777


Q ss_pred             HHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136          147 YLQRSWIILITTAL-MLMF-MYIFAQQILSLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI  222 (330)
Q Consensus       147 ~~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  222 (330)
                      ...++.......+. +..+ .+++++++..++  +.+++..+.+..|++++.++.++..+....++++|+.||.+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence            77776665554444 3444 466788888887  4577777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccchHH--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136          223 AAVALLLHTILSWLLILKLGLGLVGAA--VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM  300 (330)
Q Consensus       223 ~i~~~~~~i~l~~~li~~~~~G~~Gaa--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~  300 (330)
                      +++.++++++..+++  ..++|..|++  +++.+++.+..++..+++++++.+. +.++ ....+.+|++++.+.|..+.
T Consensus       160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~k~~l~~~~p~~~~  235 (502)
T TIGR01695       160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLL-KPRF-NFRDPGLKRFLKLFLPTTLG  235 (502)
T ss_pred             HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-cCcC-CCCChhHHHHHHHHHHHHHH
Confidence            999988877754443  3458999998  9999999999888877766533211 1111 12345789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCcHHHhhhcc
Q 020136          301 LCVEIWYFMALILFAGYLKNAKLSVAGL  328 (330)
Q Consensus       301 ~~~~~~~~~~~~~~~~~lg~~~laa~~i  328 (330)
                      .........+...+.+.+|+.++++.+.
T Consensus       236 ~~~~~~~~~id~~~~~~~~~~~v~~~~~  263 (502)
T TIGR01695       236 SSASQITLLINTALASFLEIGSVSALYY  263 (502)
T ss_pred             HHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            9999999999988888889888877654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.85  E-value=6.1e-19  Score=167.89  Aligned_cols=243  Identities=13%  Similarity=0.096  Sum_probs=198.9

Q ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHH
Q 020136           71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ  149 (330)
Q Consensus        71 l~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~  149 (330)
                      +|-+.|.+++++...+.+++|+.+++| +|+++.|+++.+.++...+......|++++....++|+.|++|+++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            467899999999999999999999999 8999999999999987765443446899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 020136          150 RSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALL  228 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~  228 (330)
                      .++++..+.+++.+++ +++.+++...++.+++.    ..++++..+..++..+....++++|+.+|.+..+..++++.+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            9999999999888765 55777777766666643    356788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-----cCCccchHHHHHHHHHHHHHHHHHHHHHhcCC-C--CCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136          229 LHTILSWLLILK-----LGLGLVGAAVALNASWWFIDITRLLYIFSGAC-G--PTWSGFSWKAFHSLWSFVRLSLASAVM  300 (330)
Q Consensus       229 ~~i~l~~~li~~-----~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~p~~~~  300 (330)
                      +|+.++..+++.     .++|+.|+++++.+++++..++..++++++++ +  ..+.++.+.+++.+|++++.+.|..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~  237 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS  237 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence            998887666542     23678889999999999999987666554322 1  112122233456889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 020136          301 LCVEIWYFMALILFAGY  317 (330)
Q Consensus       301 ~~~~~~~~~~~~~~~~~  317 (330)
                      ++.......+.+.++++
T Consensus       238 ~~~~~~~~~~d~~ii~~  254 (488)
T TIGR02900       238 RFIGSLLYFLETLLVPQ  254 (488)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888877776654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.85  E-value=1.5e-18  Score=162.99  Aligned_cols=207  Identities=14%  Similarity=0.101  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD  142 (330)
Q Consensus        63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~  142 (330)
                      ..+..|++++...|.++.....++...+|+.+.+.+++..+++++.+.++.+.....+..+++++..|..+++..+||.+
T Consensus       193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~  272 (451)
T PF03023_consen  193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE  272 (451)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            34457999999999999999999999999999999999999999999999998766678899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 020136          143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM  217 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~  217 (330)
                      +.++.+++++....++.+|.++. +.+++++.+++.    -+++-.+....+++++++++|+.+++..+...+.+.||+|
T Consensus       273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~  352 (451)
T PF03023_consen  273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK  352 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence            99999999999999999999864 669999999763    3667778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136          218 VLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA  271 (330)
Q Consensus       218 ~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~  271 (330)
                      .+++.++++.++|++++.+++..  +|..|.++|+.++.++.++++.++++|+.
T Consensus       353 ~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~  404 (451)
T PF03023_consen  353 TPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL  404 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999998888  89999999999999999999888887743

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK15099 O-antigen translocase; Provisional

Probab=99.85  E-value=1.1e-18  Score=162.81  Aligned_cols=251  Identities=10%  Similarity=0.002  Sum_probs=202.1

Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHH
Q 020136           70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL  148 (330)
Q Consensus        70 il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~  148 (330)
                      ++|-+......++...+.+++-..++.+ +|+++.|.++..+.+...+......|++++.+..++|+  ++|+++.++..
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            5566777788899999999999999999 99999999999998877665545778888888889987  67888999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 020136          149 QRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL  227 (330)
Q Consensus       149 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~  227 (330)
                      ..++.+..+.+++++++ +++.+++...++.+++.    ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888864 66889998887777652    34556666666677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 020136          228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGP-TWSGFSWKAFHSLWSFVRLSLASAVMLCVEIW  306 (330)
Q Consensus       228 ~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~  306 (330)
                      ++|+.+ +++.+.. .|+.|+++|+.+++.+..+...+++++++..+ ++.++ +.+++.+|+++++|.|...++...+.
T Consensus       157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i  233 (416)
T PRK15099        157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV  233 (416)
T ss_pred             HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887 4444432 49999999999999999887777776533211 11111 22466789999999999999999999


Q ss_pred             HHHHHHHHhh-cCCcHHHhhhccc
Q 020136          307 YFMALILFAG-YLKNAKLSVAGLS  329 (330)
Q Consensus       307 ~~~~~~~~~~-~lg~~~laa~~i~  329 (330)
                      .....+.+++ .+|+.++++.+++
T Consensus       234 ~~~~~~~~l~~~~g~~~vg~y~~a  257 (416)
T PRK15099        234 AYVMMRNLLAAHYSWDEVGIWQGV  257 (416)
T ss_pred             HHHHHHHHHHhcCCHHHhhHHHHH
Confidence            9999988885 9999998887653

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.84  E-value=3e-18  Score=163.11  Aligned_cols=204  Identities=14%  Similarity=0.110  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CCh------hHHHHH----HHHHHHHHHHHHHHHHHHhhhHH
Q 020136           61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST------LALAAV----SVENSVIAGFSFGAMLGMGSALE  129 (330)
Q Consensus        61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~------~~~aa~----~~~~~i~~~~~~~~~~~l~~a~~  129 (330)
                      +.+++.+|++++++.|..++++...+.+.+|+.++++ +++      .+.+.+    +++.++.... ..+..+++++..
T Consensus       218 ~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~  296 (488)
T TIGR02900       218 SEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALV  296 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHH
Confidence            3456688999999999999999999999999999987 432      122222    3444555555 456789999999


Q ss_pred             hHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136          130 TLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVK  208 (330)
Q Consensus       130 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~  208 (330)
                      |.+++++|++|+++.++..++...+..+++++.+++ .+++++++.++..++    .+..++++++++.++..++....+
T Consensus       297 p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~  372 (488)
T TIGR02900       297 PDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQS  372 (488)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988864 668899998876544    367889999999999999999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          209 FLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       209 ~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      ++++.||+|.+++.++++.++|++++++++....+|+.|+++|+.+++++..++..++.+|
T Consensus       373 ~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~  433 (488)
T TIGR02900       373 ILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK  433 (488)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999884344899999999999999999988877765

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.83  E-value=2e-17  Score=153.99  Aligned_cols=209  Identities=16%  Similarity=0.068  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        62 ~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      .+....|++.+...|..+....+++...+|+.+.+.+.+..++.+..+.++++...-.+..++++...|..|++..++|.
T Consensus       226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~  305 (518)
T COG0728         226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW  305 (518)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence            34467899999999999999999999999999999999999999999999999876668999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 020136          142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKI  216 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  216 (330)
                      ++.++..+++++++.++.+|.++. ..+++|+.+.+.    -+++....+...+..+.++.+++.+..++...+.+.+|+
T Consensus       306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~  385 (518)
T COG0728         306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT  385 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence            999999999999999999999975 669999998762    256667778899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 020136          217 MVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC  272 (330)
Q Consensus       217 ~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~  272 (330)
                      |.|+++++++.++|+.+++++...  +|..|.++++.++.++++..+++.++++..
T Consensus       386 ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~  439 (518)
T COG0728         386 KTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLV  439 (518)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999888777  788899999999999999988888877443

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.82  E-value=9.2e-21  Score=153.55  Aligned_cols=160  Identities=24%  Similarity=0.402  Sum_probs=153.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHH
Q 020136           76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL  155 (330)
Q Consensus        76 P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~  155 (330)
                      |.++++++..+...+|+.+++++|++++++++++.++.+.. ..+..|++++.++.++|++|++|++++++.++.++.+.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence            88999999999999999999999999999999999997766 56899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHH
Q 020136          156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTIL  233 (330)
Q Consensus       156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~l  233 (330)
                      .+++++++++ +++.+++..+++.|+++.+.+..|+++..++.|+..+.....++++|.||++.+++.++++. ++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence            9999999976 66889999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHH
Q 020136          234 SWL  236 (330)
Q Consensus       234 ~~~  236 (330)
                      +|+
T Consensus       160 ~yl  162 (162)
T PF01554_consen  160 AYL  162 (162)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK15099 O-antigen translocase; Provisional

Probab=99.80  E-value=3.3e-17  Score=152.96  Aligned_cols=202  Identities=10%  Similarity=-0.013  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136           61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG  139 (330)
Q Consensus        61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~  139 (330)
                      +++++.+|++++++.|..++++...+...+|+.++++ +|++++|+|+.+.++.+.+...+..+++++..|.++++   +
T Consensus       208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~  284 (416)
T PRK15099        208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T  284 (416)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            4456778999999999999999999999999999985 99999999999999977554568899999999999995   6


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 020136          140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV  218 (330)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~  218 (330)
                      |+++.++.+++.......++++.+++ ++++++++.++.+++  .+.+.+++++++++..+...+......+...++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~  362 (416)
T PRK15099        285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF  362 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999998888888887764 579999999987665  334678899999999988888877777778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       219 ~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      .....+...++++++++++++.  +|..|+++++.+++.+..++......+
T Consensus       363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~  411 (416)
T PRK15099        363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988889999999999988  799999999999999999877655543

>PRK10459 colanic acid exporter; Provisional

Probab=99.78  E-value=2.7e-16  Score=149.97  Aligned_cols=201  Identities=11%  Similarity=0.043  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      +++..|++++++.|...+++...+...+|+.++|+ +|++++|.|+.++++.+.....+...+++...|..++.  ++|+
T Consensus       202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~  279 (492)
T PRK10459        202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT  279 (492)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence            35667999999999999999999999999999999 89999999999999977654445556778888999886  6788


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      ++.++.+++...+...+++|+++. .+++++++.++.+++  ...+...+++++++..+..+.......+++.||+|..+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~  357 (492)
T PRK10459        280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF  357 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence            899999999999999889988864 668899988776554  35678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      +.+++.++++++..+++...  +|+.|+++|+.+++.+..+...++..|
T Consensus       358 ~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        358 KWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888777765  799999999999999998888877755

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.71  E-value=7.2e-15  Score=139.72  Aligned_cols=187  Identities=21%  Similarity=0.283  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        63 ~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      .++..|++++.+.|..++.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+..+++.+..|..++.+.++|+
T Consensus       208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~  286 (480)
T COG2244         208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR  286 (480)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence            46788999999999999999999999999999999 9999999999888886655 568889999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      ++.++..++...+....+++..++ .+++++++.++.+++..  .+...+++++++.++..+.......+++.|+++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            999999999999999999998865 66888998877665532  278889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Q 020136          221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS  255 (330)
Q Consensus       221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~  255 (330)
                      +.+.++.++|++++++++..  +|..|+++++ .+
T Consensus       365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~  396 (480)
T COG2244         365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS  396 (480)
T ss_pred             HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence            99999999999999999988  7999999999 44

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.60  E-value=1.7e-12  Score=122.04  Aligned_cols=225  Identities=15%  Similarity=0.130  Sum_probs=183.9

Q ss_pred             CChh-HHHHHHHHHHHHHHHHHHHH-HHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 020136           98 ISTL-ALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILS  174 (330)
Q Consensus        98 ~g~~-~~aa~~~~~~i~~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  174 (330)
                      +|.. +..+|.++.++.+.+...+. .+++++..|...+.. ++++++.++..+..+.+..+..+.++++ +++++++..
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654 57789999999887644444 468999999999999 8899999999999888887777777754 778899998


Q ss_pred             Hc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchHH
Q 020136          175 LI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGAA  249 (330)
Q Consensus       175 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G---~~Gaa  249 (330)
                      ++  +.+++..+.+.+++++..+..++.++..++.+++|+.+|...+....++.++..++..+++...  +|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence            87  5678889999999999999999999999999999999999999999888887666554444444  66   88999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhc
Q 020136          250 VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAG  327 (330)
Q Consensus       250 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~  327 (330)
                      +++.++.++..++.+...+|...+.+. .+. ...++.|++++...|..+..........+...+++.+++..+++..
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~  237 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRFGFRFRP-KFD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALN  237 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccc-cCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            999999999999988888763332111 111 1234688899999999999999999999999999999998887654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.48  E-value=1.2e-12  Score=118.79  Aligned_cols=133  Identities=23%  Similarity=0.282  Sum_probs=120.4

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCC
Q 020136           60 SREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAG  139 (330)
Q Consensus        60 ~~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~  139 (330)
                      .+++++..|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.+.. ..+..+++++..|.+++++|++
T Consensus       208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~  286 (342)
T TIGR00797       208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG  286 (342)
T ss_pred             cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence            344566789999999999999999999999999999999999999999999996655 5688999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 020136          140 QLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWM  193 (330)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~  193 (330)
                      |.++.++.+++++++..+++++.+++ .++++++.+++..|+++.+.+..++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998864 6688999999999999999998888764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.46  E-value=2.8e-10  Score=106.59  Aligned_cols=258  Identities=14%  Similarity=0.051  Sum_probs=201.8

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CCh-hHHHHHHHHHHHHHHHHHHHH-HHHhhhHHhHHHhhhcCCCcchH
Q 020136           68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST-LALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMM  144 (330)
Q Consensus        68 ~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~-~~~aa~~~~~~i~~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~  144 (330)
                      .+++|-+.-....++++.+.+++-..+++. +|. ....++.+++++-+.+--.+. .+++++..|...++..+++.++.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            457777777888888888899998888888 998 468899999999987644443 34689999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ--TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      ++..+....+...+.+.++++ .++++++.+.. +.  |++....+....++..+..++.++.....++++..++...+.
T Consensus        87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a  166 (518)
T COG0728          87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA  166 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence            888777776666666666654 66777777444 33  234333688888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 020136          221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM  300 (330)
Q Consensus       221 ~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~  300 (330)
                      +.-++-++.-+...+++.+.......+.++++.++-+.+.++.++.++|.....+++ +. ..-..+|++.+...|..+.
T Consensus       167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~-~~~~~lk~~~~~~~p~~l~  244 (518)
T COG0728         167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FG-FKDPGLKRFLKLMLPALLG  244 (518)
T ss_pred             hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CC-CCchhHHHHHHHHHHHHHH
Confidence            999888877775666555544334678999999999999999999998843222111 11 1125788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCcHHHhhhc
Q 020136          301 LCVEIWYFMALILFAGYLKNAKLSVAG  327 (330)
Q Consensus       301 ~~~~~~~~~~~~~~~~~lg~~~laa~~  327 (330)
                      .....+...+.+.+++.+.+...+..+
T Consensus       245 ~sisQi~lli~~~iAS~l~~Gsis~l~  271 (518)
T COG0728         245 VSISQINLLIDTAIASFLAEGSVSWLY  271 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            999999999999999999887766543

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.43  E-value=3.9e-10  Score=98.59  Aligned_cols=243  Identities=17%  Similarity=0.202  Sum_probs=170.6

Q ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHH
Q 020136           71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ  149 (330)
Q Consensus        71 l~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~  149 (330)
                      +|-+.-....++...+.+++-..++.| +|+++.|.++....+.+.+......|++++....+++...+  +++.+....
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            455667778889999999999999999 99999999999999987765555778888887777776432  334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 020136          150 RSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLL  229 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~  229 (330)
                      .......+.+++..+......    .++.+ +.   ...+........++.........++++.++.+.....+++..+.
T Consensus        80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILLIAS----FFGNP-SL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL  151 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HcCCc-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433333333332222222    33333 22   12222222223357888888999999999999999999999988


Q ss_pred             HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020136          230 HTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFM  309 (330)
Q Consensus       230 ~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~  309 (330)
                      .+++..+++... .+..+..++..++..+..++..++.+++.+ .++   .....+..+++++.+.|..+..+..+....
T Consensus       152 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (273)
T PF01943_consen  152 SLLLILLLLFLG-SSLWGFLLGLVISSLVSLIISLFYLRRKLR-PRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYSQ  226 (273)
T ss_pred             HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776666542 458899999999999998888877775332 222   222367888999999999999999999988


Q ss_pred             HHHHHhhcC-CcHHHhhhcc
Q 020136          310 ALILFAGYL-KNAKLSVAGL  328 (330)
Q Consensus       310 ~~~~~~~~l-g~~~laa~~i  328 (330)
                      ....+++.+ |+.+++..++
T Consensus       227 ~d~~ii~~~~g~~~vg~Y~~  246 (273)
T PF01943_consen  227 IDRLIIGYFLGPEAVGIYSV  246 (273)
T ss_pred             hHHHHHHHhCCHHHHHHHHH
Confidence            888877666 6666655443

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=99.36  E-value=6.4e-10  Score=106.19  Aligned_cols=240  Identities=10%  Similarity=0.065  Sum_probs=172.5

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHH
Q 020136           68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGV  146 (330)
Q Consensus        68 ~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~  146 (330)
                      ++..+-+....+.++...+.+++...+++| +|+++.|.++.+..+..........|++++.    .|.   +|.  .++
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~--~~~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDI--SHL   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccC--CHH
Confidence            567777888899999999999999999999 9999999999999997766444455666653    222   121  123


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 020136          147 YLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAV  225 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~  225 (330)
                      .....+++..+.+++..++ +.+++++..++ ++++.    ...+++..+..++..+.....+.++..++.+......++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            3455566666667666654 44555555555 44443    346777788888888888899999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 020136          226 ALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEI  305 (330)
Q Consensus       226 ~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~  305 (330)
                      ..++..++...+.. .++|..+..++..++..+..+...+.. +++.++++ .   .+.+..|++++++.|.....+...
T Consensus       151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~---~~~~~~k~ll~~~~~~~~~~~~~~  224 (492)
T PRK10459        151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPAL-H---FSLASVKPNLSFGAWQTAERIINY  224 (492)
T ss_pred             HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCccc-e---ecHHHHHHHHhhhHHHHHHHHHHH
Confidence            88877777665554 468999999999999988776543332 22222221 1   124567899999999999999988


Q ss_pred             HHHHHHHHHhhcC-CcHHHhhhc
Q 020136          306 WYFMALILFAGYL-KNAKLSVAG  327 (330)
Q Consensus       306 ~~~~~~~~~~~~l-g~~~laa~~  327 (330)
                      ....+...+++++ |+.++...+
T Consensus       225 ~~~~~d~~~lg~~lg~~~vG~Y~  247 (492)
T PRK10459        225 LNTNIDTILIGRILGAEVLGGYN  247 (492)
T ss_pred             HHhcCchhhhhHhhchHhhhhHH
Confidence            8888888876554 666655443

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.28  E-value=1.7e-11  Score=114.98  Aligned_cols=205  Identities=14%  Similarity=0.109  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc
Q 020136           64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST--LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (330)
Q Consensus        64 ~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~--~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~  141 (330)
                      ++.+++++++++|..++..++.....+-....|.+++  .++++.++...+.... +.+..+++.++++.+++.+|++|.
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p  321 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP  321 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence            8888999999999999999999999999999999885  5788888888874444 667889999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      +++|.....+...+...+...... +.+.+.+...|..|+++.+...+..++++++....+.+.+..+..+|.|..+...
T Consensus       322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga  401 (473)
T KOG1347|consen  322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA  401 (473)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence            999999999999998888887764 5577888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       221 ~~~i~~~-~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      ++++.+. ++.+++...+-+.+++|..|.|++...+..+....+.+...+
T Consensus       402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~  451 (473)
T KOG1347|consen  402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR  451 (473)
T ss_pred             EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence            9999988 888888888888889999999999999976666666555543

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.26  E-value=2.3e-08  Score=86.41  Aligned_cols=221  Identities=18%  Similarity=0.168  Sum_probs=148.9

Q ss_pred             HHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 020136           86 PLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMF  164 (330)
Q Consensus        86 l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (330)
                      ..+++-..+++| +|+++.|.|+....+...+......|+.+..    .+ ..++|+++.++..+..+....+.+++..+
T Consensus         2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (251)
T PF13440_consen    2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSL----VR-SAARDKQDIRSLLRFSLLVSLLLAVILAI   76 (251)
T ss_pred             hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677888899 9999999999999997766443345554443    33 23455666666666665544443333332


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 020136          165 MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG  244 (330)
Q Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G  244 (330)
                      +   ...+..++ .+++    ...++.+..+..++..+....++.+++.+|.+......++..++.+.+..++... +.+
T Consensus        77 ~---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  147 (251)
T PF13440_consen   77 L---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN  147 (251)
T ss_pred             H---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            2   11122233 3332    3345667778888899999999999999999999999999998875555444443 247


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcHHH
Q 020136          245 LVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY-LKNAKL  323 (330)
Q Consensus       245 ~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-lg~~~l  323 (330)
                      ..+..++..++..+..+...++.++ +  .+...    ..+.. +.++.+.|.....+..+........+++. +|..++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~  219 (251)
T PF13440_consen  148 LWSILLAFIISALLALLISFYLLRR-K--LRLSF----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV  219 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-c--cCCCc----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            8889999999988877765543321 1  11111    22222 37899999999999999998888888888 888777


Q ss_pred             hhhcc
Q 020136          324 SVAGL  328 (330)
Q Consensus       324 aa~~i  328 (330)
                      +..++
T Consensus       220 g~y~~  224 (251)
T PF13440_consen  220 GIYSV  224 (251)
T ss_pred             HHHHH
Confidence            65543

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.15  E-value=2.2e-08  Score=95.27  Aligned_cols=244  Identities=15%  Similarity=0.118  Sum_probs=168.2

Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHH
Q 020136           67 GKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMG  145 (330)
Q Consensus        67 ~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~  145 (330)
                      .+++.+-+.-....++...+..++-...++| +|+++.|.++.+..+...+......|+..+....++++..++++....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~   84 (480)
T COG2244           5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI   84 (480)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence            3678888889999999999999999999999 999999999999999887755556888888888888876655555555


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 020136          146 VY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAA  224 (330)
Q Consensus       146 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i  224 (330)
                      .. ....+....+.+++.........+.      ++    .....+++..++.+.........+++|+.++.+......+
T Consensus        85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (480)
T COG2244          85 LLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIV  154 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Confidence            44 4444444444333333332222222      22    2344567889999999999999999999999999998844


Q ss_pred             HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 020136          225 VALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE  304 (330)
Q Consensus       225 ~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  304 (330)
                      .. .+-+.....+..   ....+..++...+.........++.++++.+..+..+ +...+.+++.++.++|........
T Consensus       155 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~~  229 (480)
T COG2244         155 SS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLLN  229 (480)
T ss_pred             HH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHHH
Confidence            44 222222222222   2455666777777777666665555422222222222 224678999999999999999999


Q ss_pred             HHHHHHHHHHhhcC-CcHHHhh
Q 020136          305 IWYFMALILFAGYL-KNAKLSV  325 (330)
Q Consensus       305 ~~~~~~~~~~~~~l-g~~~laa  325 (330)
                      .....+...+++.+ |+.++..
T Consensus       230 ~l~~~~D~~~i~~~l~~~~vG~  251 (480)
T COG2244         230 FLFTNIDTLLLGLFLGPAQVGI  251 (480)
T ss_pred             HHHHHHHHHHHHHHhhhhHhee
Confidence            99998888876655 5555443

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.93  E-value=5.2e-06  Score=72.05  Aligned_cols=250  Identities=12%  Similarity=0.030  Sum_probs=156.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCC--h-hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcc
Q 020136           66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIS--T-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD  142 (330)
Q Consensus        66 ~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g--~-~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~  142 (330)
                      ..++++++-+|..++.+...+...+-+.-+++..  + +.+|+|+++..+.-.+ .++...+-+....     ++.++++
T Consensus         9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~rs   82 (345)
T PF07260_consen    9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKRS   82 (345)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchhh
Confidence            3478999999999999999999888888787632  3 3499999999985444 4455555554433     3333332


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Q 020136          143 MMGVYLQRSWIILITTALMLMFMYI--FAQQILS-LIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL  219 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  219 (330)
                      +. +.+......+.+...+..++.+  +...++. +++.++++.+.+...+.++.+..++.++....+|++.=.+++...
T Consensus        83 rr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV  161 (345)
T PF07260_consen   83 RR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV  161 (345)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence            22 2222222222222222222222  3344443 568899999999999999999999999999999998877777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchH---HHHHHHHHHHHHHHHH-HHHHh-cCCCCCCCCCCHHhHHHHHHHHHHH
Q 020136          220 AVIAAVALLLHTILSWLLILKLGLGLVGA---AVALNASWWFIDITRL-LYIFS-GACGPTWSGFSWKAFHSLWSFVRLS  294 (330)
Q Consensus       220 ~~~~i~~~~~~i~l~~~li~~~~~G~~Ga---a~a~~i~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  294 (330)
                      ...++...+..+++..+++...--....+   .++...+..+.+-+.. -|++. ....+...+........+++++++.
T Consensus       162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~  241 (345)
T PF07260_consen  162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW  241 (345)
T ss_pred             ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence            77777766666665555553110011111   1222333322222211 12211 2222222222333445788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-CCcHH
Q 020136          295 LASAVMLCVEIWYFMALILFAGY-LKNAK  322 (330)
Q Consensus       295 ~p~~~~~~~~~~~~~~~~~~~~~-lg~~~  322 (330)
                      +|.+......+.+--+.+.+.+| +|..+
T Consensus       242 ~PL~~~~~tq~~SrplVnl~vsR~l~gs~  270 (345)
T PF07260_consen  242 WPLALVLATQRISRPLVNLFVSRDLSGSQ  270 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence            99999999999999999999999 65543

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.92  E-value=6.6e-08  Score=76.57  Aligned_cols=79  Identities=25%  Similarity=0.328  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          190 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       190 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      +++++++.++.++....+..+++.||++..++.++++.++|+++++++++.  +|..|+++|+.+++.+...+..++.+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999877  899999999999999999999888877


Q ss_pred             c
Q 020136          270 G  270 (330)
Q Consensus       270 ~  270 (330)
                      +
T Consensus        80 ~   80 (146)
T PF14667_consen   80 K   80 (146)
T ss_pred             H
Confidence            3

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.85  E-value=9.5e-07  Score=84.46  Aligned_cols=201  Identities=14%  Similarity=0.061  Sum_probs=164.8

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCc---
Q 020136           68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL---  141 (330)
Q Consensus        68 ~~il~~~~P~~~~~~~~~l~~~id~~~i~~---~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~---  141 (330)
                      ++.+++........+.-.+.+--|+.++..   ...++.|.|++++..-++++-.+...+-...-...++....++.   
T Consensus       253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~  332 (549)
T PF04506_consen  253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK  332 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence            678888999999999999999999999998   45678999999999988888889999999998899988765433   


Q ss_pred             ------chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 020136          142 ------DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS  214 (330)
Q Consensus       142 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g  214 (330)
                            ++..+.+...+++...+++++.+. -..++.++.+++++......+...+++++..+|+++++.+.-++.++..
T Consensus       333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a  412 (549)
T PF04506_consen  333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA  412 (549)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence                  335566777777777777766643 5577888888876666566678889999999999999999999999887


Q ss_pred             chhHHHHHH---HHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          215 KIMVLAVIA---AVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       215 ~~~~~~~~~---i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      +.+.....+   ++..++.+..+++++.. ++|..|..+|.++......+...+++++
T Consensus       413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~  469 (549)
T PF04506_consen  413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR  469 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            766554443   44456667788888886 7999999999999999999999888877

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.53  E-value=7.9e-05  Score=67.75  Aligned_cols=196  Identities=14%  Similarity=0.073  Sum_probs=145.8

Q ss_pred             HHHhHHHHHHHHHhHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcchHHHHH
Q 020136           72 YLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL  148 (330)
Q Consensus        72 ~~~~P~~~~~~~~~l~~~id~~~i~~---~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~  148 (330)
                      +...-..-..+.-.+.+--|..++..   +.-.+.|.|.+.+..-++++-.+...+--..-...+|....++.|+.++..
T Consensus       243 ~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~  322 (530)
T KOG2864|consen  243 KLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAV  322 (530)
T ss_pred             HHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHH
Confidence            33333344456666667778888874   445577888888887777777788888888888889988887777766554


Q ss_pred             ---HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH---H
Q 020136          149 ---QRSWIILITTALMLMF-MYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA---V  221 (330)
Q Consensus       149 ---~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~  221 (330)
                         ...+.+...++++... ..-.+..++.+++++......+...++++++.+|+.+++.+.-+++.+.++.+...   +
T Consensus       323 ~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~  402 (530)
T KOG2864|consen  323 DVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNK  402 (530)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhccc
Confidence               4445555555544443 24466778888877766555667889999999999999999999999987776554   3


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       222 ~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      ..++..++.++++|+++-+  +|..|.-+|.++...+.-+....++++
T Consensus       403 ~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~  448 (530)
T KOG2864|consen  403 FMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH  448 (530)
T ss_pred             chhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455668888999999998  677999999999888888877777765

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.65  E-value=0.0003  Score=61.20  Aligned_cols=72  Identities=13%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhh
Q 020136           64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAY  136 (330)
Q Consensus        64 ~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~  136 (330)
                      ++..|++++.+.|..++.+...+...+|+.++++ .|++++|.|+.+.++...+ ..+...+.+...|..++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence            6778999999999999999999999999999999 9999999999999998776 5578889999999998853

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.53  E-value=0.015  Score=49.88  Aligned_cols=67  Identities=13%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             HHHHHHhHHHHHHHHHhHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhh
Q 020136           69 KLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA  135 (330)
Q Consensus        69 ~il~~~~P~~~~~~~~~l~~~id~~~i~~-~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~  135 (330)
                      +.++.+.|..+..+...+...+|..+++. +|++++|.|+.+.++...+...+..++++...|..+|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            37899999999999999999999999999 99999999999999977664368899999999988873

>COG4267 Predicted membrane protein [Function unknown]

Probab=95.44  E-value=2  Score=39.04  Aligned_cols=136  Identities=10%  Similarity=0.138  Sum_probs=93.3

Q ss_pred             HHHHHHhhhHHhHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 020136          119 GAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLF  198 (330)
Q Consensus       119 ~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~  198 (330)
                      .+..|+....+..+|...=+++.+++...+.-...+....+..+..       ++.....+.     ...|=........
T Consensus        75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~-----si~yk~l~~~~FV  142 (467)
T COG4267          75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQY-----SIVYKILACALFV  142 (467)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCch-----hHHHHHHHHHHHH
Confidence            3556777777788888777777777665554444333333322221       111111222     1222334455666


Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          199 AYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       199 ~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      .++.......++.+.+|.+...+.-.++.++.+.+..++-..   ++.|.-++..++..+.......++.|
T Consensus       143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~~---~ie~lLL~~~IGi~~i~~l~~~~Ilr  210 (467)
T COG4267         143 GMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLKS---PIEGLLLTLDIGIFIILFLLNFYILR  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            677777888899999999999999999999998888776654   89999999999999999888888877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	4e-40
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	5e-05

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  145 bits (368), Expect = 4e-40
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 10/264 (3%)

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSV-IAGFSFGAM 121
           + KE   L  LA P +  ++ Q  +G +  + +G +S + +AAVS+  S+ +    FG  
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-- 64

Query: 122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE 181
           +G+  AL  +  Q  GAG+   +   + +  I+ +  ++ ++ +    Q I+  +   + 
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124

Query: 182 ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-K 240
           ++     +   +I  + AY L   +  F    S      VI  + LLL+  L+W+ +  K
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184

Query: 241 LG---LGLVGAAVALNASWWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLS 294
            G   LG VG  VA    +W + +  L YI +    A    +  F       L    RL 
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244

Query: 295 LASAVMLCVEIWYFMALILFAGYL 318
              A  L  E+  F  + L    L
Sbjct: 245 FPVAAALFFEVTLFAVVALLVAPL 268

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 57  RDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGF 116
             F +   KE  +L+ L  P       +  L A+  +    + +  +AA  V  +  +  
Sbjct: 227 ETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALN-FSSL 285

Query: 117 SFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLM-FMYIFAQQILSL 175
            F   + +G+A+    G   G        +      +  + TA +      +F +QI  L
Sbjct: 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345

Query: 176 IGQTQEISNAAGTF 189
             + Q +   A   
Sbjct: 346 YTENQVVVALAMQL 359

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.97
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.92

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.97  E-value=4e-30  Score=241.09  Aligned_cols=268  Identities=22%  Similarity=0.333  Sum_probs=241.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCC
Q 020136           61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ  140 (330)
Q Consensus        61 ~~~~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~  140 (330)
                      ...++..|++++.+.|.+++++...+.+.+|+.+++++|++++|+++++.++.... ..+..+++.+..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            44567889999999999999999999999999999999999999999999996654 56788999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 020136          141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA  220 (330)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  220 (330)
                      +++.++.+++++.+..++++++++++++.++++.+++.+++..+.+..|+++++++.++..+....++++|+.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999877777788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCCHHhHHHHHHHHHH
Q 020136          221 VIAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFIDITRLLYIFSGACGPT---WSGFSWKAFHSLWSFVRL  293 (330)
Q Consensus       221 ~~~i~~~~~~i~l~~~li~~-~---~~G~~Gaa~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~  293 (330)
                      +.++++.++|+++++++++. +   ++|+.|+++|+.+++++..++..+++++++...+   +.++.+.+++.+|++++.
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 4   6999999999999999999988888876443221   233334455678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHhhhccc
Q 020136          294 SLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLS  329 (330)
Q Consensus       294 ~~p~~~~~~~~~~~~~~~~~~~~~lg~~~laa~~i~  329 (330)
                      ++|..++.+.++..+.+.+.+++++|+.++++++++
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~  279 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVA  279 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            999999999999999999999999999999998764

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.92  E-value=7.3e-24  Score=198.45  Aligned_cols=205  Identities=15%  Similarity=0.114  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhhhcCCCcch
Q 020136           64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM  143 (330)
Q Consensus        64 ~~~~~~il~~~~P~~~~~~~~~l~~~id~~~i~~~g~~~~aa~~~~~~i~~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~  143 (330)
                      ++..|++++++.|.+++++...+...+|+.+++++|++++|+|+++.++.+.. ..+..+++++..|.+++++|++|+++
T Consensus       234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~  312 (460)
T 3mkt_A          234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG  312 (460)
T ss_dssp             TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            34558899999999999999999999999999999999999999999997766 56889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 020136          144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI  222 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  222 (330)
                      .++..+.+..+...++++.+++ +++++++..++..|+++.+.+..++++++++.++.+++....+++++.||++.+++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  392 (460)
T 3mkt_A          313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR  392 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            9999999999999999998865 668999999998888888999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHh----cC-CccchHHHHHHHHHHHHHHHHHHHHHh
Q 020136          223 AAVAL-LLHTILSWLLILK----LG-LGLVGAAVALNASWWFIDITRLLYIFS  269 (330)
Q Consensus       223 ~i~~~-~~~i~l~~~li~~----~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~~  269 (330)
                      ++++. ++++++++++++.    ++ +|+.|+|+|+.+++++..++..+.+++
T Consensus       393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~  445 (460)
T 3mkt_A          393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW  445 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 9999999999987    67 999999999999999998877665554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00