Citrus Sinensis ID: 020146

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
MTPPPTAMEQNGDSTPSPTTTASDSQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSAATAQPVTVAVPAVVPVAKPIVSPSNSGEEQVISSNSSPAAGAAGVTAHTCGGGHTCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRGGVGGGDGGGQAAMELLSEKRFSCGEGEEMSTRLFGVPIGAKRAREVNCGGEPSSSTAENATRLQLQLKSEPLDYQMGGGGGGDHCDRQETPWLRQSHHRPNQRVCN
cccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccHHHHHHHHHcccccccHHHHHHHHHHcccEEcccccEEEEcccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccHHHHHcHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccEEEEEcccEEccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccc
mtppptameqngdstpsptttasdsqrsmptpfltktyqlvdDQAIDDViswnkdgttfvvwnptifardllpryfkhnnfSSFVRQLNTygfkkvvpdrwefsndcFRRGEQQLLREIQRRKIQsaataqpvtvavpavvpvakpivspsnsgeeqvissnsspaagaagvtahtcggghtcaEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMsnytrggvgggdggGQAAMELLSEkrfscgegeemstrlfgvpigakrarevncggepssstaENATRLQLQLksepldyqmggggggdhcdrqetpwlrqshhrpnqrvcn
mtppptameqngdstpsptttasdsqrsmpTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQsaataqpvtvavPAVVPVAKPIVSPSNSGEEQVISSNSSPAAGAAGVTAHTCGGGHTCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRGGVGGGDGGGQAAMELLSEKRFSCGEGEEMSTRLFGVPIGAKRAREVNCGgepssstaenATRLQLQLKSEPLDYQMGGGGGGDHCDRQETpwlrqshhrpnqrvcn
MTPPPTAMEQNGdstpsptttasdsQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSaataqpvtvavpavvpvaKPIVSPSNSGEEQVIssnsspaagaagVTAHTCGGGHTCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRggvgggdgggQAAMELLSEKRFSCGEGEEMSTRLFGVPIGAKRAREVNCGGEPSSSTAENATRLQLQLKSEPLDYQMggggggDHCDRQETPWLRQSHHRPNQRVCN
********************************FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSAATAQPVTVAVPAVVPVAK****************************AHTCGGGHTCA*******************VAEMKNLCNNIFSLMSNYTRGGVG*****************************LFGVPI********************************************************************
*********************************LTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLR************************************************************************NDKLRKENAQLNK**AE**NLCNNIFSLMS****************************************************************************************************SHHR*******
****************************MPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSAATAQPVTVAVPAVVPVAKPIV************************TAHTCGGGHTCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRGGVGGGDGGGQAAMELLSEKRFSCGEGEEMSTRLFGVPIGAKRARE**************ATRLQLQLKSEPLDYQMGGGGGGDHCDRQETPWL*************
***************************SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRR**********************************************************HTCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNYTRG****************************MSTRLFGVPIGAKRA************************************************WLRQ*****N**VC*
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MTPPPTAMEQNGDSTPSPTTTASDSQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSAATAQPVTVAVPAVVPVAKPIVSPSNSGEEQVISSNSSPAAGAAGVTAHTCGGGHTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIFSLMSNYTRGGVGGGDGGGQAAMELLSEKRFSCGEGEEMSTRLFGVPIGAKRAREVNCGGEPSSSTAENATRLQLQLKSEPLDYQMGGGGGGDHCDRQETPWLRQSHHRPNQRVCN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query330 2.2.26 [Sep-21-2011]
Q9SCW4299 Heat stress transcription yes no 0.863 0.953 0.501 2e-77
Q9T0D3377 Heat stress transcription no no 0.742 0.649 0.543 5e-64
Q6Z9C8390 Heat stress transcription yes no 0.790 0.669 0.479 5e-61
Q652B0454 Heat stress transcription yes no 0.866 0.629 0.429 1e-60
Q7XRX3305 Heat stress transcription no no 0.551 0.596 0.534 1e-53
P22335301 Heat shock factor protein N/A no 0.578 0.634 0.507 1e-49
Q9C635348 Heat stress transcription no no 0.584 0.554 0.459 7e-46
Q96320284 Heat stress transcription no no 0.581 0.676 0.465 9e-45
Q7XHZ0310 Heat stress transcription no no 0.590 0.629 0.459 1e-43
Q10KX8305 Heat stress transcription no no 0.554 0.6 0.462 2e-41
>sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1 Back     alignment and function desciption
 Score =  289 bits (740), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/341 (50%), Positives = 211/341 (61%), Gaps = 56/341 (16%)

Query: 2   TPPPTAMEQNGDSTPSPTTTASDSQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVV 61
           +PP  AM           T  S SQRS+PTPFLTKT+ LV+D +IDDVISWN+DG++F+V
Sbjct: 3   SPPVDAM----------ITGESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIV 52

Query: 62  WNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQR 121
           WNPT FA+DLLP++FKHNNFSSFVRQLNTYGFKKVVPDRWEFSND F+RGE++LLREIQR
Sbjct: 53  WNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQR 112

Query: 122 RKIQSAATAQPVTVAVPAVVPVAKPIVSPSNSGEE----QVISSNSSPAAGAAGVTAHTC 177
           RKI    T     VA  +       +VSPSNSGE+    QV+S  SSP++     T  T 
Sbjct: 113 RKI---TTTHQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMS--SSPSSWYCHQTK-TT 166

Query: 178 GGGHTCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY-----TRGGVGGGDGG 232
           G G    E++EEN+KLR +N QLN+++ +MK++C+NI+SLMSNY     T      G G 
Sbjct: 167 GNGGLSVELLEENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSPG-GS 225

Query: 233 GQAAMELLSEKRFSCGEGEEM---STRLFGVPIGAKRAREVNCGGEPSSSTAENATRLQL 289
               ME L  KRFS  E EE    S RLFGVPIG KR R      + ++   EN+     
Sbjct: 226 SSQPMEFLPAKRFSEMEIEEEEEASPRLFGVPIGLKRTRSEGVQVKTTAVVGENSD---- 281

Query: 290 QLKSEPLDYQMGGGGGGDHCDRQETPWLRQSHHRPNQRVCN 330
                                 +ETPWLR  ++R NQRVCN
Sbjct: 282 ----------------------EETPWLRH-YNRTNQRVCN 299
Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1 Back     alignment and function description
>sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1 Back     alignment and function description
>sp|Q652B0|HFB2C_ORYSJ Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1 Back     alignment and function description
>sp|Q7XRX3|HFB2A_ORYSJ Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2 Back     alignment and function description
>sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1 Back     alignment and function description
>sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1 Back     alignment and function description
>sp|Q96320|HSFB1_ARATH Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1 Back     alignment and function description
>sp|Q10KX8|HFB4D_ORYSJ Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
356529255338 PREDICTED: heat stress transcription fac 0.896 0.875 0.541 4e-89
255539503323 Heat shock factor protein, putative [Ric 0.890 0.910 0.564 2e-88
402715727338 heat shock transcription factor HSFB2a [ 0.896 0.875 0.538 3e-88
356574481300 PREDICTED: heat stress transcription fac 0.881 0.97 0.539 4e-86
356559849348 PREDICTED: heat stress transcription fac 0.927 0.879 0.518 3e-85
356534149289 PREDICTED: heat stress transcription fac 0.836 0.955 0.518 2e-82
225426819305 PREDICTED: heat stress transcription fac 0.884 0.957 0.521 4e-82
289466351305 HSP transcription factor [Vitis pseudore 0.884 0.957 0.518 2e-81
147852112 477 hypothetical protein VITISV_009283 [Viti 0.884 0.612 0.518 1e-80
297742579306 unnamed protein product [Vitis vinifera] 0.836 0.901 0.509 7e-78
>gi|356529255|ref|XP_003533211.1| PREDICTED: heat stress transcription factor B-2a-like [Glycine max] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 195/360 (54%), Positives = 244/360 (67%), Gaps = 64/360 (17%)

Query: 8   MEQNGD---STPSPTTTASDSQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNP 64
           +E NGD   +  +  + A++SQRS+PTPFLTKT+QLVDDQ+IDDVISWN DG+TF+VWNP
Sbjct: 6   VEYNGDCATTASASASAAAESQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNP 65

Query: 65  TIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKI 124
           T+FARDLLP+YFKHNNFSSFVRQLNTYGF+KVVPDRWEFSN+ FRRGE++LL EIQRRKI
Sbjct: 66  TVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKI 125

Query: 125 QSAATA--QPVTVAVPAVVPV-AKPIVSPSNSGEEQVISSNSSPAAGAAGVTAHTCGGGH 181
            S A++   P TV+V A +P+ A PI+SPSNSGEEQV SSNSSP                
Sbjct: 126 SSPASSPTAPATVSVTAPMPLTAIPIISPSNSGEEQVTSSNSSP---------------- 169

Query: 182 TCAEMVEENDKLRKENAQLNKQVAEMKNLCNNIFSLMSNY--------------TRGGVG 227
             AE+++EN++LRKEN QL K++AEM++LCNNI+SLMSNY              T+GG G
Sbjct: 170 --AELLDENERLRKENVQLTKELAEMRSLCNNIYSLMSNYANANGKGNSNGSYKTKGGAG 227

Query: 228 GGDG---GGQAAMELL--------SEKRFSCGEGEEMSTRLFGVPIGAKRAREVNCGGEP 276
              G    G  A++LL        S++  +    EEM+ +LFGV IGAKRARE   GG+ 
Sbjct: 228 VAHGSLESGMTAVKLLDLMPVMRSSDEDAAEMAPEEMNPKLFGVAIGAKRAREGGGGGD- 286

Query: 277 SSSTAENATRLQLQ------LKSEPLDYQMGGGGGGDHCDRQETPWLRQSHHRPNQRVCN 330
                E  T L+L       +KSEPLD+Q       +H + Q+TPWL    +R NQRVCN
Sbjct: 287 CGGGGEEDTLLRLHHAGSADVKSEPLDFQ-------NHRENQKTPWLSPC-YRTNQRVCN 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255539503|ref|XP_002510816.1| Heat shock factor protein, putative [Ricinus communis] gi|223549931|gb|EEF51418.1| Heat shock factor protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|402715727|gb|AFQ93677.1| heat shock transcription factor HSFB2a [Glycine max] Back     alignment and taxonomy information
>gi|356574481|ref|XP_003555375.1| PREDICTED: heat stress transcription factor B-2a-like [Glycine max] Back     alignment and taxonomy information
>gi|356559849|ref|XP_003548209.1| PREDICTED: heat stress transcription factor B-2a-like [Glycine max] Back     alignment and taxonomy information
>gi|356534149|ref|XP_003535620.1| PREDICTED: heat stress transcription factor B-2a-like [Glycine max] Back     alignment and taxonomy information
>gi|225426819|ref|XP_002283139.1| PREDICTED: heat stress transcription factor B-2b [Vitis vinifera] Back     alignment and taxonomy information
>gi|289466351|gb|ADC94861.1| HSP transcription factor [Vitis pseudoreticulata] Back     alignment and taxonomy information
>gi|147852112|emb|CAN82265.1| hypothetical protein VITISV_009283 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742579|emb|CBI34728.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query330
TAIR|locus:2174043299 HSFB2A "AT5G62020" [Arabidopsi 0.775 0.856 0.516 3.2e-65
TAIR|locus:2139792377 AT-HSFB2B [Arabidopsis thalian 0.593 0.519 0.551 2.8e-57
TAIR|locus:2825726348 HSFB4 "AT1G46264" [Arabidopsis 0.293 0.278 0.742 2.9e-46
TAIR|locus:2115015284 HSF4 "AT4G36990" [Arabidopsis 0.296 0.345 0.714 2.8e-42
TAIR|locus:2005495 495 HSF1 "AT4G17750" [Arabidopsis 0.290 0.193 0.635 6.7e-33
TAIR|locus:2062698244 HSFB3 "AT2G41690" [Arabidopsis 0.545 0.737 0.406 2.3e-32
TAIR|locus:2144603412 HSFA3 "AT5G03720" [Arabidopsis 0.278 0.223 0.630 2.6e-32
TAIR|locus:2172003345 RHA1 "AT5G45710" [Arabidopsis 0.287 0.275 0.604 3.4e-32
TAIR|locus:2129276 466 AT-HSFA5 "AT4G13980" [Arabidop 0.284 0.201 0.585 4.3e-32
TAIR|locus:2117139401 HSF A4A "AT4G18880" [Arabidops 0.287 0.236 0.614 4.7e-32
TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 138/267 (51%), Positives = 171/267 (64%)

Query:    26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFV 85
             QRS+PTPFLTKT+ LV+D +IDDVISWN+DG++F+VWNPT FA+DLLP++FKHNNFSSFV
Sbjct:    17 QRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFV 76

Query:    86 RQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXK 145
             RQLNTYGFKKVVPDRWEFSND F+RGE++LLREIQRRKI +                   
Sbjct:    77 RQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTM-- 134

Query:   146 PIVSPSNSGEEQVIXXXXXXXXXXXXV-TAHTCGGGHTCAEMVEENDKLRKENAQLNKQV 204
              +VSPSNSGE+                    T G G    E++EEN+KLR +N QLN+++
Sbjct:   135 -VVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLEENEKLRSQNIQLNREL 193

Query:   205 AEMKNLCNNIFSLMSNYTRXXXXXXXXX----XQAAMELLSEKRFS---CGEGEEMSTRL 257
              +MK++C+NI+SLMSNY                   ME L  KRFS     E EE S RL
Sbjct:   194 TQMKSICDNIYSLMSNYVGSQPTDRSYSPGGSSSQPMEFLPAKRFSEMEIEEEEEASPRL 253

Query:   258 FGVPIGAKRAREVNCGGEPSSSTAENA 284
             FGVPIG KR R      + ++   EN+
Sbjct:   254 FGVPIGLKRTRSEGVQVKTTAVVGENS 280
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0010200 "response to chitin" evidence=IEP;RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
TAIR|locus:2139792 AT-HSFB2B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825726 HSFB4 "AT1G46264" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115015 HSF4 "AT4G36990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062698 HSFB3 "AT2G41690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SCW4HFB2A_ARATHNo assigned EC number0.50140.86360.9531yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
pfam0044796 pfam00447, HSF_DNA-bind, HSF-type DNA-binding 1e-56
smart00415105 smart00415, HSF, heat shock factor 5e-51
COG5169282 COG5169, HSF1, Heat shock transcription factor [Tr 3e-28
smart0033865 smart00338, BRLZ, basic region leucin zipper 0.002
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding Back     alignment and domain information 
 Score =  178 bits (454), Expect = 1e-56
 Identities = 54/94 (57%), Positives = 77/94 (81%), Gaps = 2/94 (2%)

Query: 32  PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTY 91
           PFL K Y++++D + DD+ISW++DG +F++W+P  FA+ +LP+YFKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 92  GFKKVVPDR--WEFSNDCFRRGEQQLLREIQRRK 123
           GF KV  DR  WEF++  F+RG+++LL +I+RRK
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRK 94

Length = 96
>gnl|CDD|214654 smart00415, HSF, heat shock factor Back     alignment and domain information
>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription] Back     alignment and domain information
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 330
KOG0627304 consensus Heat shock transcription factor [Transcr 100.0
smart00415105 HSF heat shock factor. 100.0
PF00447103 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0 100.0
COG5169282 HSF1 Heat shock transcription factor [Transcriptio 99.97
PF0017885 Ets: Ets-domain; InterPro: IPR000418 Transcription 96.12
smart0041387 ETS erythroblast transformation specific domain. v 94.36
KOG3806177 consensus Predicted transcription factor [Transcri 90.24
PF07407 420 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: 88.36
KOG4196135 consensus bZIP transcription factor MafK [Transcri 85.81
PF0234432 Myc-LZ: Myc leucine zipper domain; InterPro: IPR00 84.26
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 83.87
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 80.54
>KOG0627 consensus Heat shock transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-38  Score=299.82  Aligned_cols=104  Identities=60%  Similarity=1.095  Sum_probs=98.7

Q ss_pred             CCCCCCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc--CCceEE
Q 020146           26 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV--PDRWEF  103 (330)
Q Consensus        26 ~r~~p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~--~d~~eF  103 (330)
                      ..+.+++|+.|||+||+||+++++|+|+++|++|||||+.+|++.|||+||||+||+|||||||+||||||.  +++|||
T Consensus         8 ~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF   87 (304)
T KOG0627|consen    8 EASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEF   87 (304)
T ss_pred             ccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceee
Confidence            344778999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             EcCCcCCCcHhhHHhcccccCCCCCC
Q 020146          104 SNDCFRRGEQQLLREIQRRKIQSAAT  129 (330)
Q Consensus       104 ~h~~F~Rg~~~lL~~IkRrk~~~~~~  129 (330)
                      +|++|+||+++||++|+|||......
T Consensus        88 ~n~~F~rg~~~LL~~I~rrk~~~~~~  113 (304)
T KOG0627|consen   88 SNPCFVRGQKLLLKNIKRRKSASRIF  113 (304)
T ss_pred             cChhHhcChHHHHHHHhhhccccCCc
Confidence            99999999999999999999876643

>smart00415 HSF heat shock factor Back     alignment and domain information
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs [] Back     alignment and domain information
>COG5169 HSF1 Heat shock transcription factor [Transcription] Back     alignment and domain information
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription [] Back     alignment and domain information
>smart00413 ETS erythroblast transformation specific domain Back     alignment and domain information
>KOG3806 consensus Predicted transcription factor [Transcription] Back     alignment and domain information
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
2ldu_A125 Solution Nmr Structure Of Heat Shock Factor Protein 1e-20
1hks_A106 Solution Structure Of The Dna-Binding Domain Of Dro 6e-18
3hts_B102 Heat Shock Transcription FactorDNA COMPLEX Length = 1e-13
1fym_A92 Serendipitous Crystal Structure Containing The Heat 5e-13
1fbu_A90 Heat Shock Transcription Factor Dna Binding Domain 7e-13
1fyk_A92 Serendipitous Crystal Structure Containing The Heat 2e-12
1fbs_A90 Heat Shock Transcription Factor Dna Binding Domain 4e-12
1fbq_A90 Heat Shock Transcription Factor Dna Binding Domain 5e-12
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 11/101 (10%)
Query: 33  FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYG 92
           FLTK + LV D   D +I W+  G +F V++   FA+++LP+YFKHNN +SFVRQLN YG
Sbjct: 20  FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYG 79
Query: 93  FKKVV---------PDR--WEFSNDCFRRGEQQLLREIQRR 122
           F+KVV         P+R   EF + CF RG++QLL  I+R+
Sbjct: 80  FRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106 Back     alignment and structure
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102 Back     alignment and structure
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92 Back     alignment and structure
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90 Back     alignment and structure
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92 Back     alignment and structure
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90 Back     alignment and structure
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query330
1hks_A106 Heat-shock transcription factor; transcription reg 3e-54
2ldu_A125 Heat shock factor protein 1; structural genomics, 7e-54
3hts_B102 Heat shock transcription factor; transcription reg 2e-46
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106 Back     alignment and structure
 Score =  172 bits (437), Expect = 3e-54
 Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 10/105 (9%)

Query: 28  SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQ 87
           S    FL K ++LVDD   + +I W KDG +FV+ N   FA++LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 88  LNTYGFKKVV----------PDRWEFSNDCFRRGEQQLLREIQRR 122
           LN YGF K+            D  EFS+  F+R    LL +I+R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
1hks_A106 Heat-shock transcription factor; transcription reg 100.0
2ldu_A125 Heat shock factor protein 1; structural genomics, 100.0
3hts_B102 Heat shock transcription factor; transcription reg 99.97
1deb_A54 APC protein, adenomatous polyposis coli protein; c 93.05
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 91.5
1awc_A110 Protein (GA binding protein alpha); complex (trans 91.45
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 91.19
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 90.72
2ypr_A102 Protein FEV; transcription; 2.64A {Homo sapiens} P 90.41
4avp_A106 ETS translocation variant 1; transcription, transc 90.41
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 88.47
1gvj_A146 C-ETS-1 protein, P54; transcription, autoinhibitio 87.86
3m48_A33 General control protein GCN4; leucine zipper, synt 87.7
3jtg_A103 ETS-related transcription factor ELF-3; ELF3, prot 87.52
2dao_A118 Transcription factor ETV6; ETS domain, structural 87.2
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 86.42
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 85.53
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 85.52
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 85.44
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 85.41
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 85.29
1wwx_A107 E74-like factor 5 ESE-2B; DNA binding, transcripti 84.99
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 84.37
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 84.19
1uo4_A34 General control protein GCN4; four helix bundle, c 83.89
3he5_B52 Synzip2; heterodimeric coiled-coil, de novo protei 83.24
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 82.87
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 82.84
1hbx_G157 ETS-domain protein ELK-4; gene regulation, transcr 82.75
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 82.36
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 82.07
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 81.98
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 81.84
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 81.81
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 81.36
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 80.69
2hy6_A34 General control protein GCN4; protein design, para 80.48
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 80.24
2lf8_A128 Transcription factor ETV6; auto-inhibition; NMR {M 80.9
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Back     alignment and structure
Probab=100.00  E-value=1.5e-39  Score=268.00  Aligned_cols=93  Identities=47%  Similarity=0.863  Sum_probs=89.1

Q ss_pred             CCchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCccccc----------CC
Q 020146           30 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVV----------PD   99 (330)
Q Consensus        30 p~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~----------~d   99 (330)
                      .++||.|||+||+|++++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.          ++
T Consensus         4 ~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~   83 (106)
T 1hks_A            4 VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRD   83 (106)
T ss_dssp             CCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTS
T ss_pred             cCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCC
Confidence            34799999999999999999999999999999999999999999999999999999999999999995          36


Q ss_pred             ceEEEcCCcCCCcHhhHHhcccc
Q 020146          100 RWEFSNDCFRRGEQQLLREIQRR  122 (330)
Q Consensus       100 ~~eF~h~~F~Rg~~~lL~~IkRr  122 (330)
                      .|+|+|++|+||+|+||.+|+||
T Consensus        84 ~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           84 EIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTEECCTTCCSSCTTSTTTCCCC
T ss_pred             ceEEECcCccCcCHHHHhhCcCC
Confidence            79999999999999999999996
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Back     alignment and structure
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Back     alignment and structure
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 330
d1hksa_106 a.4.5.22 (A:) Heat-shock transcription factor {Dro 3e-42
d2htsa_92 a.4.5.22 (A:) Heat-shock transcription factor {Mil 5e-37
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  140 bits (353), Expect = 3e-42
 Identities = 44/103 (42%), Positives = 61/103 (59%), Gaps = 10/103 (9%)

Query: 30  PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLN 89
              FL K ++LVDD   + +I W KDG +FV+ N   FA++LLP  +KHNN +SF+RQLN
Sbjct: 4   VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63

Query: 90  TYGFKKVV----------PDRWEFSNDCFRRGEQQLLREIQRR 122
            YGF K+            D  EFS+  F+R    LL +I+R+
Sbjct: 64  MYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query330
d1hksa_106 Heat-shock transcription factor {Drosophila melano 100.0
d2htsa_92 Heat-shock transcription factor {Milk yeast (Kluyv 99.96
d1pp7u_114 39 kda initiator binding protein, IBP39, N-termina 95.13
d1flia_98 Fli-1 {Human (Homo sapiens) [TaxId: 9606]} 93.1
d1awca_110 GA binding protein (GABP) alpha {Mouse (Mus muscul 93.07
d1duxc_86 Elk-1 {Human (Homo sapiens) [TaxId: 9606]} 91.7
d1gvja_142 ETS-1 transcription factor, residues 331-440 {Huma 90.99
d1hbxg_155 Serum response factor accessory protein 1a, SAP-1 90.23
d1puee_88 Transcription factor PU.1, residues 171-259 {Mouse 86.69
d1wwxa194 E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta 82.96
d1yo5c188 Sam pointed domain containing ets transcription SP 82.14
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=3.1e-36  Score=246.04  Aligned_cols=92  Identities=48%  Similarity=0.884  Sum_probs=87.4

Q ss_pred             CchHHHHHHHhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCchhhHHhhhcccCcccccC----------Cc
Q 020146           31 TPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVP----------DR  100 (330)
Q Consensus        31 ~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~VLPk~Fkh~nfsSFvRQLN~YGF~Kv~~----------d~  100 (330)
                      ++||.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||+|++|+||+||||+|||+|+..          +.
T Consensus         5 p~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~   84 (106)
T d1hksa_           5 PAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDE   84 (106)
T ss_dssp             CTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTST
T ss_pred             CcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCCCCc
Confidence            36999999999999999999999999999999999999999999999999999999999999999853          46


Q ss_pred             eEEEcCCcCCCcHhhHHhcccc
Q 020146          101 WEFSNDCFRRGEQQLLREIQRR  122 (330)
Q Consensus       101 ~eF~h~~F~Rg~~~lL~~IkRr  122 (330)
                      ++|+|++|+||+|+||..|+||
T Consensus        85 ~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          85 IEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TEECCTTCCSSCTTSTTTCCCC
T ss_pred             cEEECccccCCCHHHHhhCcCC
Confidence            8999999999999999999986
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]} Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure