Citrus Sinensis ID: 020150

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVNDSDSEENSNENSSEAAP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHcccHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccHHHcccccccEccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHcccHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccEEEEEEcccHHHHHHHEHHHHcHcccHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
maslatssfsslqflprpkipqppfsspslllrqrrtTYQFSSLVVSAqndkkstttKEVKKKAEEVEVEVEEELPWIQEKALDLVEFtgsvtqaipgprvgqsklpwilaVPLAYVGVSFVIAFVKTVkkfnspkfkrkklvnkNAMVCKTIDELFqkggdavnppalkglvqktgfSMEDVLRKYIRYALnekpfnpdLVVNLIQLRKASMLDDSQVAEILNEISRRFvrekgpvvmnmsgysekgFKRKLAVQALFGKVFylselpefcsrdsslIVKEIfgvtdedaDKLRQHTlseagdmdslekmvndsdseensnensseaap
Flexible Loop (DISEMBL)
maslatssfsslqflprpkiPQPPFSSPSLLLRQRRTTYQFSslvvsaqndkkstttkevkkkaeeveveveeelpwiQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTvkkfnspkfkrkklvnknaMVCKTIDELfqkggdavnppALKGLVQKTGFSMEDVLRKYIRYAlnekpfnpDLVVNLIQLRKASMLDDSQVAEILNEIsrrfvrekgpvVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFgvtdedadKLRQHtlseagdmdslEKMVNdsdseensnensseaap
Low Complexity Region (SEG)
MASLATSSFSSLQFLPRPKIpqppfsspslllrqrrTTYQFSSLVVSAQNDKKSTTTkevkkkaeeveveveeeLPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVkkfnspkfkrkkLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVndsdseensnensseAAP
Disordered region (IsUnstruct)
************************************************************************EELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVT*******************************************
Disordered Region (DISOPRED)
*********SSLQFLPRPKIPQPPFSSPSLLL*******************************************PWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTV*****************AMVCKTIDELFQKGGD*******KGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDS***********************
Disordered Region (DISEMBL)
**********SLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLV****************************ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEK********************
Disordered Region (DISPRO)
**S****SFSSLQFLPRPKI***PF*SPS****************************************EVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMD************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVNDSDSEENSNENSSEAAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
225463793	345	PREDICTED: uncharacterized protein LOC10	0.775	0.742	0.765	1e-115
356577710	348	PREDICTED: uncharacterized protein LOC10	0.769	0.729	0.772	1e-113
449458726	340	PREDICTED: uncharacterized protein LOC10	0.930	0.902	0.654	1e-113
21592521	346	unknown [Arabidopsis thaliana]	0.918	0.875	0.650	1e-109
18415850	346	uncharacterized protein [Arabidopsis tha	0.912	0.869	0.662	1e-109
297806925	346	hypothetical protein ARALYDRAFT_487695 [	0.912	0.869	0.659	1e-109
147766314	371	hypothetical protein VITISV_030897 [Viti	0.775	0.690	0.695	1e-109
363807650	349	uncharacterized protein LOC100809862 [Gl	0.769	0.727	0.729	1e-108
357164825	331	PREDICTED: uncharacterized protein LOC10	0.760	0.758	0.725	1e-108
326534176	319	predicted protein [Hordeum vulgare subsp	0.890	0.921	0.636	1e-107

>gi|225463793|ref|XP_002268157.1| PREDICTED: uncharacterized protein LOC100250766 [Vitis vinifera] gi|297742717|emb|CBI35351.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/256 (76%), Positives = 230/256 (89%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWI+EKALDLVEF+GSV QAIPGPRVG+S  PWILA+PLAY G++FVIAFV+TV+KFNS
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITFVIAFVRTVQKFNS 147

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR+KLVNKNAM+CK+IDE+F  G D     AL GL+QKTGFS E++ RKYIRYALNE
Sbjct: 148 PKQKRRKLVNKNAMLCKSIDEVFLNGRDEELQSALNGLMQKTGFSREEIFRKYIRYALNE 207

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNP++V  LIQ RKAS+LDDSQVAEILNEISRR VR+KGPVVM+MSGYSEKGFKRKLA
Sbjct: 208 KPFNPEMVATLIQFRKASLLDDSQVAEILNEISRRIVRDKGPVVMDMSGYSEKGFKRKLA 267

Query: 255 VQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVND 314
           VQALFGKVFYLSELPEFCSRDSSL++KEIFGVTDEDA+K+R HTLSEAG +DSLEKM++ 
Sbjct: 268 VQALFGKVFYLSELPEFCSRDSSLVIKEIFGVTDEDAEKIRMHTLSEAGAVDSLEKMMDT 327

Query: 315 SDSEENSNENSSEAAP 330
           SD+E++S ++S+  +P
Sbjct: 328 SDTEDSSEDDSNTPSP 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577710|ref|XP_003556967.1| PREDICTED: uncharacterized protein LOC100804019 [Glycine max]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/255 (77%), Positives = 230/255 (90%), Gaps = 1/255 (0%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + LPWILA+PL Y G++FVIAFVKTV+KF+S
Sbjct: 95  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSLPWILAIPLTYAGLTFVIAFVKTVRKFSS 154

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR++ V+KNA +CK++D+LFQKG D V   ALK +  KTGF +E++LRKYIRYALNE
Sbjct: 155 PKAKRRRQVSKNATLCKSLDDLFQKGRDEVKLDALKQIENKTGFDLEEILRKYIRYALNE 214

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNPD+V +LIQLRKASML+DSQVAEILNEISRR VR+KGP+VM+ SGY+EKGFKRK+A
Sbjct: 215 KPFNPDMVADLIQLRKASMLNDSQVAEILNEISRRIVRDKGPIVMDKSGYTEKGFKRKIA 274

Query: 255 VQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVND 314
           VQALFGKVFYLSELPEFCSRDSSL+VKEIFGVTDEDADKLR HT+SEAG +D+LEKMV+ 
Sbjct: 275 VQALFGKVFYLSELPEFCSRDSSLVVKEIFGVTDEDADKLRIHTISEAGSLDALEKMVDS 334

Query: 315 SDSEENSNENSSEAA 329
           SDSE+ S E+S EA+
Sbjct: 335 SDSEDAS-EDSFEAS 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458726|ref|XP_004147098.1| PREDICTED: uncharacterized protein LOC101212890 [Cucumis sativus] gi|449526688|ref|XP_004170345.1| PREDICTED: uncharacterized protein LOC101227242 [Cucumis sativus]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/330 (65%), Positives = 254/330 (76%), Gaps = 23/330 (6%)

Query: 13  QFLPRP-----KIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEV 67
           Q L RP     K P   FS  +L  R        S+L+++A   K S +   V K+++  
Sbjct: 16  QLLHRPNSLFSKFPSSTFSPFTLSNR--------STLLLAAAKKKDSDSVPAVAKESKTS 67

Query: 68  EVEV----------EEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYV 117
           +             EEELPW QEKALDLVEF+GSVTQAIPGPRVGQS LPWILAVPLAY+
Sbjct: 68  KSNTVGDEEEFVEVEEELPWYQEKALDLVEFSGSVTQAIPGPRVGQSSLPWILAVPLAYL 127

Query: 118 GVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTG 177
           GV+FVIAFVKTV+KFNSPK KR++ V KNA +C ++DEL +KG D V P AL  +VQKTG
Sbjct: 128 GVTFVIAFVKTVRKFNSPKEKRRRQVTKNAFLCISVDELLEKGRDEVKPEALAEIVQKTG 187

Query: 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPV 237
           FS++ +LRKYIRYALNEKPFNP+LV NLIQLRKAS L+D+QVA+ILNE+SRR  R+KGPV
Sbjct: 188 FSVDQILRKYIRYALNEKPFNPELVANLIQLRKASALEDTQVAQILNEVSRRIERDKGPV 247

Query: 238 VMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQH 297
           VMNMSGY+EKGFKRKLAVQALFGK+FYLSELPEFCS+DSSL VKEIFGVTDEDA+KLR H
Sbjct: 248 VMNMSGYTEKGFKRKLAVQALFGKIFYLSELPEFCSKDSSLSVKEIFGVTDEDAEKLRLH 307

Query: 298 TLSEAGDMDSLEKMVNDSDSEENSNENSSE 327
           TLSE GDMDSL+KM + SDSE   ++ S E
Sbjct: 308 TLSEVGDMDSLQKMADISDSEALKDDPSDE 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592521|gb|AAM64471.1| unknown [Arabidopsis thaliana]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/315 (65%), Positives = 249/315 (79%), Gaps = 12/315 (3%)

Query: 20  IPQPPFSSPSLLLRQRRTTY-QFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEE---EL 75
           +P+ P  +P   LRQ R  +   S+     Q++  +  T   KK +   E   EE   ++
Sbjct: 25  LPRTPLFAPLPSLRQLRPKHISISAAAPKKQSETVTAPTPAAKKNSSVEEETEEEVEEDM 84

Query: 76  PWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSP 135
           PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+SP
Sbjct: 85  PWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSSP 144

Query: 136 KFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK 195
           K +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNEK
Sbjct: 145 KAQRKKLVNQNAMLCRSIDELLRKDG-TVHSSELKALEQKTEFNMEEILRKYIRYALNEK 203

Query: 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAV 255
           PFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKLAV
Sbjct: 204 PFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKLAV 263

Query: 256 QALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMV--- 312
           QALFGK++YLSELP+FCS+D+SLIVKEIFGVTDEDA+KLR H L+EAGD+++LEKMV   
Sbjct: 264 QALFGKIYYLSELPDFCSKDNSLIVKEIFGVTDEDAEKLRIHALAEAGDIEALEKMVEFE 323

Query: 313 ----NDSDSEENSNE 323
               + SD EE+SNE
Sbjct: 324 KTGESSSDKEEDSNE 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415850|ref|NP_568200.1| uncharacterized protein [Arabidopsis thaliana] gi|14334822|gb|AAK59589.1| unknown protein [Arabidopsis thaliana] gi|15293203|gb|AAK93712.1| unknown protein [Arabidopsis thaliana] gi|332003935|gb|AED91318.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 251/317 (79%), Gaps = 16/317 (5%)

Query: 20  IPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTT------KEVKKKAEEVEVEVEE 73
           +P  P  +P   LRQ R  +   S+  +A   K  T T      K+     EE E EVEE
Sbjct: 25  LPLTPLFAPLPSLRQLRPKH--ISISAAAPKKKSETVTAPTPAAKKNSSVEEETEEEVEE 82

Query: 74  ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFN 133
           ++PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+
Sbjct: 83  DMPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFS 142

Query: 134 SPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN 193
           SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALN
Sbjct: 143 SPKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALN 201

Query: 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKL 253
           EKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKL
Sbjct: 202 EKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKL 261

Query: 254 AVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMV- 312
           AVQALFGK++YLSELP+FCS+D+SLIVKEIFGVTDEDA+KLR H L+EAGD+++LEKMV 
Sbjct: 262 AVQALFGKIYYLSELPDFCSKDNSLIVKEIFGVTDEDAEKLRIHALAEAGDIEALEKMVE 321

Query: 313 ------NDSDSEENSNE 323
                 + SD EE+SNE
Sbjct: 322 FEKTAESSSDKEEDSNE 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806925|ref|XP_002871346.1| hypothetical protein ARALYDRAFT_487695 [Arabidopsis lyrata subsp. lyrata] gi|297317183|gb|EFH47605.1| hypothetical protein ARALYDRAFT_487695 [Arabidopsis lyrata subsp. lyrata]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/317 (65%), Positives = 250/317 (78%), Gaps = 16/317 (5%)

Query: 20  IPQPPF--SSPSLLLRQRRTTY-QFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEE--- 73
           +P+ P   S PSL  RQ R  +   S+     Q+D  +T T   KK +   E   EE   
Sbjct: 25  LPRTPLFVSLPSL--RQLRPKHPSISAAAPKKQSDTVTTPTPTAKKNSSVEEETEEEVEE 82

Query: 74  ELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFN 133
           ++ WIQEKALDLVEFTGSVTQAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV+KF+
Sbjct: 83  DMLWIQEKALDLVEFTGSVTQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFS 142

Query: 134 SPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALN 193
           SPK +RKKLVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALN
Sbjct: 143 SPKAQRKKLVNQNAMLCRSIDELLRKDG-TVHSSELKALEQKTEFNMEEILRKYIRYALN 201

Query: 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKL 253
           EKPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKL
Sbjct: 202 EKPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKL 261

Query: 254 AVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMV- 312
           AVQALFGK++YLSELP+FCS+D+SLIVKEIFGVTDEDA+KLR H L+EAGD+++LEKMV 
Sbjct: 262 AVQALFGKIYYLSELPDFCSKDNSLIVKEIFGVTDEDAEKLRIHALAEAGDIEALEKMVE 321

Query: 313 ------NDSDSEENSNE 323
                 + SD EE+SNE
Sbjct: 322 FEKTAESSSDKEEDSNE 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766314|emb|CAN72276.1| hypothetical protein VITISV_030897 [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/282 (69%), Positives = 230/282 (81%), Gaps = 26/282 (9%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWI+EKALDLVEF+GSV QAIPGPRVG+S  PWILA+PLAY G++FVIAFV+TV+KFNS
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITFVIAFVRTVQKFNS 147

Query: 135 PKFKRKKLV---------------------NKNAMVCKTIDELFQKGGDAVNPPALKGLV 173
           PK KR+KLV                     NKNAM+CK+IDE+F  G D     AL GL+
Sbjct: 148 PKQKRRKLVPVLLICFVYFLIFEDINSNDVNKNAMLCKSIDEVFLNGRDEELQSALNGLM 207

Query: 174 QKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVRE 233
           QKTGFS E++ RKYIRYALNEKPFNP++V  LIQ RKAS+LDDSQVAEILNEISRR VR+
Sbjct: 208 QKTGFSREEIFRKYIRYALNEKPFNPEMVATLIQFRKASLLDDSQVAEILNEISRRIVRD 267

Query: 234 KGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTD----- 288
           KGPVVM+MSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSL++KEIFGVTD     
Sbjct: 268 KGPVVMDMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLVIKEIFGVTDSPFLS 327

Query: 289 EDADKLRQHTLSEAGDMDSLEKMVNDSDSEENSNENSSEAAP 330
           EDA+K+R HTLSEAG +DSLEKM++ SD+E++S ++S+  +P
Sbjct: 328 EDAEKIRMHTLSEAGAVDSLEKMMDTSDTEDSSEDDSNTPSP 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807650|ref|NP_001242416.1| uncharacterized protein LOC100809862 [Glycine max] gi|255639857|gb|ACU20221.1| unknown [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/255 (72%), Positives = 227/255 (89%), Gaps = 1/255 (0%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQEKALDLVEFTGSVTQAIPGPRVG + +PWILA+PL Y G++FVIAFVKT++KF+S
Sbjct: 96  LPWIQEKALDLVEFTGSVTQAIPGPRVGPTSMPWILAIPLTYAGLTFVIAFVKTIRKFSS 155

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           PK KR++ V+KNA +CK++D+LF+KG D V   ALK +  KTGF +E++LRKYIRY LNE
Sbjct: 156 PKAKRRRQVSKNATLCKSLDDLFEKGRDQVKLDALKQIENKTGFDLEEILRKYIRYTLNE 215

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNPD+V +LI LRKAS+L+DSQVAEILN+ISRR VR+KGP+VM+ SGY++KGFKRK+A
Sbjct: 216 KPFNPDMVADLIHLRKASILNDSQVAEILNDISRRIVRDKGPIVMDKSGYTDKGFKRKIA 275

Query: 255 VQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVND 314
           VQALFGKVFYLSELPEFCSRD+SL+VKEIFGVTDEDADKLR H +SEAG +D+LEKMV+ 
Sbjct: 276 VQALFGKVFYLSELPEFCSRDTSLVVKEIFGVTDEDADKLRIHAISEAGSLDALEKMVDS 335

Query: 315 SDSEENSNENSSEAA 329
           S+SE+ S E+S EA+
Sbjct: 336 SNSEDAS-EDSFEAS 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164825|ref|XP_003580179.1| PREDICTED: uncharacterized protein LOC100830071 [Brachypodium distachyon]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/251 (72%), Positives = 222/251 (88%)

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQ+KALDLVEFTG+VTQAIPGPRVG S +PW+LAVPLAYVG +FV++ V+TV+KF S
Sbjct: 81  LPWIQDKALDLVEFTGTVTQAIPGPRVGSSPVPWLLAVPLAYVGATFVLSVVRTVRKFTS 140

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           P+ ++KK V KN  + K++DELFQKG +AV  PAL+ L+QKTGF M+DV+RKYIRY LNE
Sbjct: 141 PRTQKKKRVTKNIFLLKSLDELFQKGREAVGFPALQELMQKTGFDMDDVVRKYIRYTLNE 200

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           KPFNPD+VV+LI LRKASML+D++VAEILNEISRR VREKGP+VM++SG++E+GFKRKLA
Sbjct: 201 KPFNPDVVVDLIHLRKASMLEDAEVAEILNEISRRIVREKGPIVMDLSGFTEQGFKRKLA 260

Query: 255 VQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVND 314
           VQ LFGK+ YLSELPEFCSRDSSL+VKEIFGVTDEDAD LR HTLSE GD++SL++MV+D
Sbjct: 261 VQTLFGKIMYLSELPEFCSRDSSLVVKEIFGVTDEDADSLRSHTLSETGDIESLQRMVDD 320

Query: 315 SDSEENSNENS 325
           SD E  +  +S
Sbjct: 321 SDFEHGTPSSS 331

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326534176|dbj|BAJ89438.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/311 (63%), Positives = 245/311 (78%), Gaps = 17/311 (5%)

Query: 15  LPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEE 74
           LP P    P  S+P L+ R +RT                   +    K+  + EVEVEEE
Sbjct: 26  LPAPTRATPRRSTPLLVARAKRTN-----------------NSSAAPKREADEEVEVEEE 68

Query: 75  LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134
           LPWIQ+KALDLVEFTG+VTQAIPGPRVG S +PW+LAVPLAYVG+SF ++ V+TV++F S
Sbjct: 69  LPWIQDKALDLVEFTGTVTQAIPGPRVGSSPVPWLLAVPLAYVGISFALSVVRTVRRFTS 128

Query: 135 PKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
           P+ ++KK V KN  + K++DELFQKG +AV+ PA++ L+QKTGF M+DV+RKYIRY LNE
Sbjct: 129 PRTQKKKRVTKNIFLLKSLDELFQKGREAVDFPAIQELMQKTGFDMDDVVRKYIRYTLNE 188

Query: 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
           K FNPD+VV+LI LRKASML+D++VAEILNEISRR VREKGP+VM++SG++E+GFKRKLA
Sbjct: 189 KQFNPDVVVDLIHLRKASMLEDNEVAEILNEISRRIVREKGPIVMDLSGFTEQGFKRKLA 248

Query: 255 VQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMVND 314
           VQ LFGK+ YLSELPEFCSRD SL+VKEIFGVTDEDAD LR  TLSEAGD++SLEKMV+D
Sbjct: 249 VQTLFGKIMYLSELPEFCSRDGSLVVKEIFGVTDEDADSLRSRTLSEAGDIESLEKMVDD 308

Query: 315 SDSEENSNENS 325
           SD E  +  +S
Sbjct: 309 SDFEHGTTSSS 319

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2159532	346	AT5G08540 "AT5G08540" [Arabido	0.718	0.684	0.735	4e-90

TAIR|locus:2159532 AT5G08540 "AT5G08540" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 175/238 (73%), Positives = 204/238 (85%)

Query:    75 LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVXXXXX 134
             +PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV     
Sbjct:    84 MPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSS 143

Query:   135 XXXXXXXLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
                    LVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNE
Sbjct:   144 PKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALNE 202

Query:   195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
             KPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKLA
Sbjct:   203 KPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKLA 262

Query:   255 VQALFGKVFYLSELPEFCSRDSSLIVKEIFGVTDEDADKLRQHTLSEAGDMDSLEKMV 312
             VQALFGK++YLSELP+FCS+D+SLIVKEIFGVTDEDA+KLR H L+EAGD+++LEKMV
Sbjct:   263 VQALFGKIYYLSELPDFCSKDNSLIVKEIFGVTDEDAEKLRIHALAEAGDIEALEKMV 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      330       270   0.00097  114 3  11 22  0.48    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.12u 0.10s 21.22t   Elapsed:  00:00:01
  Total cpu time:  21.12u 0.10s 21.22t   Elapsed:  00:00:01
  Start:  Sat May 11 04:30:13 2013   End:  Sat May 11 04:30:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG0154	573	consensus RNA-binding protein RBM5 and related pro	98.51
KOG4509	247	consensus Uncharacterized conserved protein [Funct	86.86
TIGR02395	429	rpoN_sigma RNA polymerase sigma-54 factor. A sigma	80.21

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]

Probab=98.51  E-value=6.6e-09  Score=102.79  Aligned_cols=221  Identities=16%  Similarity=0.062  Sum_probs=193.9

Q ss_pred             hhhHHHHhcchhhHHhhhhhhhhccccccccCCCCCCCCCchhHHHhhhHhhhhhhhhhhhhhhhhcCChhhhhhhhhcc
Q 020150           66 EVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVKKFNSPKFKRKKLVNK  145 (330)
Q Consensus        66 ~~e~e~e~e~~wiqekaldlve~tG~vtQaIPGPRvg~s~lPwllAlPLAylG~TFviA~vRtvrK~~SPraKRkR~VnK  145 (330)
                      +.++..+...+|+++++.+-++|+....|.+.+++...+-++|-++-.+++.|++.+..++....+....|.+.+-...=
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~d~~~s~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~i~q~~~~~~~~~  314 (573)
T KOG0154|consen  235 ETDEYYEDPETSVYYDTDSGLYFNDASSQYLYGDDEQSDYFYAKLSPSLPEFGVPNALQKKKKKEKPKIAQVKTKDMEKW  314 (573)
T ss_pred             cccCceecCCccceeeccccceeccccccccccCCCcceeeecccccccccccccHHHhhhcccccccchhhhhhhHHhh
Confidence            55666778899999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhHHhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHHHhccCCCChHHHHHHHHHHhhc--CCCcHHHHHHH
Q 020150          146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKAS--MLDDSQVAEIL  223 (330)
Q Consensus       146 Na~LvkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as--~L~d~evaeiL  223 (330)
                      ++++++..++|.-... ..+.....++....|+....|-.+|..|..+|+.++|+.+...+|.+...  +|.+..++..-
T Consensus       315 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (573)
T KOG0154|consen  315 AKYLSKEKDSYLLSST-PAHEGVHTGVNTSKGAEPGPVKKEKKLYKKKEKFVNPELSKRGSHVSPSKNLKLIDVSTGLSD  393 (573)
T ss_pred             hhhhhccccccccccc-ccceecccccccccccCchhhhhhccccccchhccCccccccccccCccccccccccccCCCc
Confidence            8999988888765544 47788888999999999999999999999999999999999999998853  56666666666


Q ss_pred             HHHHHhhhhccCCeeeecccccchhhhhHHHHHHHHHhHhhhccchhhhccCCCccchhhcccc
Q 020150          224 NEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKVFYLSELPEFCSRDSSLIVKEIFGVT  287 (330)
Q Consensus       224 ~E~s~Ri~~~~G~vmmn~~G~Te~G~kRK~a~~aLF~KllyLsEl~ef~s~dssL~vkeiFGvT  287 (330)
                      ++.....-.+++.....+.++.+.+|..+.+++.-|....+..|..+++.+...+..+.++|++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~s~~h~~n~~~~~~~~~~~~~~~~~~~  457 (573)
T KOG0154|consen  394 SELEQEKSLKLVDKLKLMCLLCRRQFPSKGSLQKHLTPSDLHKENLDKHRRPSTLEEASAEGPL  457 (573)
T ss_pred             hHhhhhhhhhccccchhhhhhhhccCCchHHHhhhcccccchhhhHHhhccchhhhhhcccccc
Confidence            6666666668888889999999999999999999999999999999999888655455555544

>KOG4509 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.86  E-value=1.2  Score=42.07  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             hhhhhhhhhhhhhhcCChhhhhhhhhcchhhHHhhHHHHHhcCCCCCCch-HHHHHHHhhCCChHHHHHHHHHHHhccCC
Q 020150          118 GVSFVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPP-ALKGLVQKTGFSMEDVLRKYIRYALNEKP  196 (330)
Q Consensus       118 G~TFviA~vRtvrK~~SPraKRkR~VnKNa~LvkSLdeyfp~gRda~~~~-vLk~L~~KTGFs~~Ei~RKYirY~LnEr~  196 (330)
                      ||-++.-..|+.+-=|.-|-|=+--+.+-..-++-|.+|+.+..+...+- -.|--++.||||-+-||++|+.-.|+|--
T Consensus        41 GIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqekEdgk~~eQ~KI~~NaTG~SY~~iF~e~~dd~l~~V~  120 (247)
T KOG4509|consen   41 GIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEKEDGKTHEQIKIAANATGFSYARIFGECCDDRLREVH  120 (247)
T ss_pred             hHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhccCcccHHHHHHHHHhhhhheee
Confidence            88888888888776666666666667777777888999999777665554 55556789999999999999998888753

>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor

Probab=80.21  E-value=5.4  Score=39.82  Aligned_cols=89  Identities=26%  Similarity=0.465  Sum_probs=68.4

Q ss_pred             hHHhhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHH----HHH---------HHHhcc--------CCCChHHHHHHH
Q 020150          148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR----KYI---------RYALNE--------KPFNPDLVVNLI  206 (330)
Q Consensus       148 ~LvkSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~R----KYi---------rY~LnE--------r~F~~d~VaDLi  206 (330)
                      .||+.=.+||..|..++..=.||.+..++|.+-.-|=|    ||+         +|....        ...+.+.|-+.|
T Consensus       300 ~Iv~~Q~~Ff~~G~~~LkPLtlkdiA~~lglheSTVSRav~~Kyi~tp~Gi~~lk~FFs~~~~~~~~g~~~S~~~Ik~~I  379 (429)
T TIGR02395       300 AIVEHQKDFFLGGPAALKPLTLREVAEELGLHESTISRAINNKYLQTPRGVFELKYFFSRGVQTDSGEGEVSSTAIKALI  379 (429)
T ss_pred             HHHHHHHHHHhcCcccCcCCcHHHHHHHhCCCccchhhhhcCceEecCCceEEHHHhcCCccCCCCCCCccCHHHHHHHH
Confidence            45555578999998887777999999999999998887    774         566653        236777776665


Q ss_pred             HH-----HhhcCCCcHHHHHHHHH----HHHhhhhccCC
Q 020150          207 QL-----RKASMLDDSQVAEILNE----ISRRFVREKGP  236 (330)
Q Consensus       207 ~L-----r~as~L~d~evaeiL~E----~s~Ri~~~~G~  236 (330)
                      +-     -+.--|||.+++++|.+    +|||-|-||=.
T Consensus       380 ~~lI~~E~~~~PlSD~~I~~~L~~~Gi~IaRRTVaKYRe  418 (429)
T TIGR02395       380 KELIAAEDKRKPLSDQKIAELLKEKGIKIARRTVAKYRE  418 (429)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHhcCCCeehHHHHHHHH
Confidence            52     23355999999999985    79999999843

A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 9e-07
 Identities = 56/370 (15%), Positives = 114/370 (30%), Gaps = 112/370 (30%)

Query: 36  RTTYQFSSLVVSAQNDKKSTTTKEVKKKAEEVEVEVEEELP---WIQEKALDLVEFTGSV 92
           R  Y+F    +  +  + S  T+   ++ + +  + +          +  L L +   ++
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ---AL 144

Query: 93  TQAIPGPRV------GQSKLPWILAVP-LAYVGV----SFVIAFVKTVKKFNSPKFKRKK 141
            +  P   V      G  K    +A+       V     F I ++  +K  NSP+   + 
Sbjct: 145 LELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEM 201

Query: 142 LVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDL 201
           L      +   ID  +    D  +   L+             ++  +R  L  KP+   L
Sbjct: 202 LQK----LLYQIDPNWTSRSDHSSNIKLR----------IHSIQAELRRLLKSKPYENCL 247

Query: 202 VVNLIQLRKASMLD-------------DSQVAEILNEISRRFVREKGPVVMNMSGYSEKG 248
           +V L+ ++ A   +               QV + L+  +   +     +  +    +   
Sbjct: 248 LV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI----SLDHHSMTLTPD- 301

Query: 249 FKRKLAVQALFGKVFYLS--ELP-EFCS-------------RD----------------- 275
                 V++L  K       +LP E  +             RD                 
Sbjct: 302 -----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 276 ----SSL------IVKEIF---GVTDEDADKLRQHTLS-------EAGDMDSLEKMVNDS 315
               SSL        +++F    V    A  +    LS       ++  M  + K+   S
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 316 DSEENSNENS 325
             E+   E++
Sbjct: 416 LVEKQPKEST 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4aq3_A	169	Apoptosis regulator BCL-2, BCL-2-like protein 1; c	82.98

>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*

Probab=82.98  E-value=1  Score=38.59  Aligned_cols=68  Identities=21%  Similarity=0.315  Sum_probs=40.5

Q ss_pred             hhCCChHHHHHHHHHHHhccCCCChHHHHHHH--HHHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150          175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI--QLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS  242 (330)
Q Consensus       175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi--~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~  242 (330)
                      .+||+.-+|+++||.|.|+.+-+.-....+=+  +-..-.+-..++|.+.|+.++.-+=++|....-|+.
T Consensus         9 ~~~~~~r~lv~~yi~~kL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~   78 (169)
T 4aq3_A            9 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS   78 (169)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTCCCC-------------------CHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHcCCCcCcccccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            57999999999999999999976543222111  011123456778999999999988888877655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1g5ma_	164	Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}	89.34
d2f2ab1	107	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	81.33

>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Membrane and cell surface proteins and peptides
fold: Toxins' membrane translocation domains
superfamily: Bcl-2 inhibitors of programmed cell death
family: Bcl-2 inhibitors of programmed cell death
domain: Bcl-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.031  Score=45.65  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=43.7

Q ss_pred             hhCCChHHHHHHHHHHHhccCCCChHHHHHHHH--HHhhcCCCcHHHHHHHHHHHHhhhhccCCeeeecc
Q 020150          175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ--LRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS  242 (330)
Q Consensus       175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~--Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~  242 (330)
                      .+||+..||++.||.|.|+.+-|.-....+...  ...-.+-..++|++.|+.++..+=++|....-||.
T Consensus         4 ~~~~~~Relv~dyI~yrL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~vgdele~~~~~~f~~m~   73 (164)
T d1g5ma_           4 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS   73 (164)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTCCCCCTTTCCSCSCSSCSCCSSSSSHHHHHHHHHHHHHHHHCSSSTGGG
T ss_pred             ccccchHHHHHHHHHHHHhccCCCccCCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999988774221111100  00113445567778888877777777766544443

>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: GatB/YqeY motif
superfamily: GatB/YqeY motif
family: GatB/GatE C-terminal domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.33  E-value=2.8  Score=30.91  Aligned_cols=87  Identities=18%  Similarity=0.345  Sum_probs=53.0

Q ss_pred             hhhhhhhhhcc------hhhHH---hhHHHHHhcCCCCCCchHHHHHHHhhCCChHHHHHHHHHH---HhccCCCChHHH
Q 020150          135 PKFKRKKLVNK------NAMVC---KTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRY---ALNEKPFNPDLV  202 (330)
Q Consensus       135 PraKRkR~VnK------Na~Lv---kSLdeyfp~gRda~~~~vLk~L~~KTGFs~~Ei~RKYirY---~LnEr~F~~d~V  202 (330)
                      |..||+|.++.      .+.+.   ..+.+||.+--.....+     +.-.+|=..|+++ |+..   .+.+-+++|+.+
T Consensus         3 P~~k~~R~~~~ygL~~~da~~L~~~~~l~~~FE~~~~~~~~~-----k~~aNwl~~el~~-~ln~~~~~i~~~~i~~~~l   76 (107)
T d2f2ab1           3 PDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADV-----KLTSNWLMGGVNE-YLNKNQVELLDTKLTPENL   76 (107)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHTSSHHHHHHHHHHHTTTCCH-----HHHHHHHHTHHHH-HHHTTTCCTTTSSCCHHHH
T ss_pred             hHHHHHHHHHHcCcCHHHHHHHHccHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHH-HHHhcCCccccCCcCHHHH
Confidence            77888888876      22222   45677887522111111     1122222334443 2111   123347999999


Q ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHH
Q 020150          203 VNLIQLRKASMLDDSQVAEILNEIS  227 (330)
Q Consensus       203 aDLi~Lr~as~L~d~evaeiL~E~s  227 (330)
                      ++||.|=..=-+|....++||.++-
T Consensus        77 a~Li~lv~~g~Is~~~aK~vl~~~~  101 (107)
T d2f2ab1          77 AGMIKLIEDGTMSSKIAKKVFPELA  101 (107)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccHHHHHHHHHHHH
Confidence            9999999999999999999988754