Citrus Sinensis ID: 020153

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MGFCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHEEEHHEEEccccEEEHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHcHHHHHHEHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHccccEEEEHEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccccEEEccc
Coil and Loop (DISEMBL)
MGFCPFGLVLLLLLSIVLIATMALSFAWmfgetkpsgselLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALvqsrdidnnkkGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKgfygteqanniglvnagqylqekyggglfpILYIWGIGllaagqsstitgtyAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSqehimgtfkigPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGItfsswrahpklvpgte
Flexible Loop (DISEMBL)
MGFCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFsswrahpklvpgte
Low Complexity Region (SEG)
MGFCPFGlvlllllsivliATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
Disordered region (IsUnstruct)
**FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAH********
Disordered Region (DISOPRED)
*GFCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALV***************ALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRA*********
Disordered Region (DISEMBL)
MGFCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
Disordered Region (DISPRO)
MGFCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKL*PGTE
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSWRAHPKLVPGTE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9SNV9	509	Metal transporter Nramp3	yes	no	0.951	0.616	0.777	1e-141
Q9C6B2	530	Metal transporter Nramp2	no	no	0.896	0.558	0.804	1e-138
Q9FN18	512	Metal transporter Nramp4	no	no	0.954	0.615	0.711	1e-132
Q2QN30	541	Metal transporter Nramp6	yes	no	0.930	0.567	0.740	1e-128
Q10Q65	524	Metal transporter Nramp2	no	no	0.915	0.576	0.718	1e-125
Q9SN36	530	Metal transporter Nramp5	no	no	0.890	0.554	0.734	1e-122
Q869V1	533	Metal transporter nramp1	yes	no	0.724	0.448	0.485	6e-62
P49283	596	Protein Malvolio OS=Droso	yes	no	0.912	0.505	0.435	4e-59
P49281	568	Natural resistance-associ	yes	no	0.787	0.457	0.438	2e-58
P51027	555	Natural resistance-associ	yes	no	0.878	0.522	0.419	2e-56

>sp|Q9SNV9|NRAM3_ARATH Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2

 Score =  500 bits (1288), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/314 (77%), Positives = 282/314 (89%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65
           +G+  L  +  VLIATM +SFAWMFG+ KPSGSELLIGILVPKLSS+TIQ+AVGVVGCII
Sbjct: 188 YGIRKLEAVFAVLIATMGVSFAWMFGQAKPSGSELLIGILVPKLSSRTIQKAVGVVGCII 247

Query: 66  MPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG 125
           MPHNVFLHSALVQSR++D  +K RVQEAL YY+IEST+AL +SF+INLFVTTVFAKGFY 
Sbjct: 248 MPHNVFLHSALVQSREVDKRQKYRVQEALNYYTIESTIALFISFLINLFVTTVFAKGFYN 307

Query: 126 TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185
           T+ AN+IGLVNAGQYLQEKYGGG+FPILYIW IGLLAAGQSSTITGTYAGQFIMGGFLN 
Sbjct: 308 TDLANSIGLVNAGQYLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNF 367

Query: 186 RLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 245
           ++KKWLRALITRSCAI+PTIIVALVFD+SE  LDVLNEWLNVLQS+QIPFALIPLL LVS
Sbjct: 368 KMKKWLRALITRSCAIIPTIIVALVFDSSEATLDVLNEWLNVLQSIQIPFALIPLLCLVS 427

Query: 246 QEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAF 305
           +E IMG+FKIGP+ K ++WLVA LVI+INGYLLLEFFS+EV+G++    + +FTA Y AF
Sbjct: 428 KEQIMGSFKIGPLYKTIAWLVAALVIMINGYLLLEFFSNEVSGIVYTGFVTLFTASYGAF 487

Query: 306 IIYLVSRGITFSSW 319
           I+YL++RGITF+ W
Sbjct: 488 ILYLIARGITFTPW 501

Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP4 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP4, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts. Involved in basal resistance to the bacterial pathogen E.chrysanthemi.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6B2|NRAM2_ARATH Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/296 (80%), Positives = 268/296 (90%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLIATM LSFAWMFGETKPSG EL+IGIL+P+LSSKTI+QAVGVVGC+IMPHNVFLHSAL
Sbjct: 211 VLIATMGLSFAWMFGETKPSGKELMIGILLPRLSSKTIRQAVGVVGCVIMPHNVFLHSAL 270

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR ID  +K RVQEAL YY IES++AL +SFMINLFVTTVFAKGFYGTE+ANNIGLVN
Sbjct: 271 VQSRKIDPKRKSRVQEALNYYLIESSVALFISFMINLFVTTVFAKGFYGTEKANNIGLVN 330

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQEK+GGGL PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RA+IT
Sbjct: 331 AGQYLQEKFGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRAVIT 390

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RSCAIVPT+IVA+VF+TSE  LDVLNEWLNVLQSVQIPFAL+PLL LVS+E IMG FKIG
Sbjct: 391 RSCAIVPTMIVAIVFNTSEASLDVLNEWLNVLQSVQIPFALLPLLTLVSKEEIMGDFKIG 450

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSR 312
           PIL+ ++W VA LV++INGYLLL+FF SEV+G L    + V+T  Y+AFI+YL+S 
Sbjct: 451 PILQRIAWTVAALVMIINGYLLLDFFVSEVDGFLFGVTVCVWTTAYIAFIVYLISH 506

Seems to be involved in iron uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/315 (71%), Positives = 274/315 (86%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65
           +G+  L  +  +LIATMAL+FAWMFG+TKPSG+ELL+G LVPKLSS+TI+QAVG+VGCII
Sbjct: 184 YGIRKLEAVFAILIATMALAFAWMFGQTKPSGTELLVGALVPKLSSRTIKQAVGIVGCII 243

Query: 66  MPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG 125
           MPHNVFLHSALVQSR++D  K+ RV+EAL+YYSIEST AL VSF+IN+FVTTVFAK FYG
Sbjct: 244 MPHNVFLHSALVQSREVDPKKRFRVKEALKYYSIESTGALAVSFIINVFVTTVFAKSFYG 303

Query: 126 TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185
           TE A+ IGL NAGQYLQ+KYGGG FPILYIW IG+LAAGQSSTITGTYAGQFIMGGFLNL
Sbjct: 304 TEIADTIGLANAGQYLQDKYGGGFFPILYIWAIGVLAAGQSSTITGTYAGQFIMGGFLNL 363

Query: 186 RLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 245
           ++KKW+RALITRSCAI+PT+IVALVFD+S+ MLD LNEWLNVLQSVQIPFA+IPLL LVS
Sbjct: 364 KMKKWVRALITRSCAIIPTMIVALVFDSSDSMLDELNEWLNVLQSVQIPFAVIPLLCLVS 423

Query: 246 QEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAF 305
            E IMG+FKI P+++ +SW+VA LVI INGYL+++FFS     +++   + +F   YV F
Sbjct: 424 NEQIMGSFKIQPLVQTISWIVAALVIAINGYLMVDFFSGAATNLILLVPVIIFAIAYVVF 483

Query: 306 IIYLVSRGITFSSWR 320
           ++YL+SRG+T++ W+
Sbjct: 484 VLYLISRGLTYTPWQ 498

Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP3 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP3, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QN30|NRAM6_ORYSJ Metal transporter Nramp6 OS=Oryza sativa subsp. japonica GN=NRAMP6 PE=2 SV=1

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/308 (74%), Positives = 265/308 (86%), Gaps = 1/308 (0%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65
           +G+  L  +  +LIATMA+SFAWMF +TKP+   L IGILVPKLSS+TI+QAVGVVGC+I
Sbjct: 219 YGVRKLEAVFAILIATMAVSFAWMFTDTKPNMKNLFIGILVPKLSSRTIRQAVGVVGCVI 278

Query: 66  MPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG 125
           MPHNVFLHSALVQSR ID NK+ +V+EALRYYSIEST+AL VSFMINLFVTTVFAKGFYG
Sbjct: 279 MPHNVFLHSALVQSRKIDPNKEHQVREALRYYSIESTIALAVSFMINLFVTTVFAKGFYG 338

Query: 126 TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185
           T++A NIGL NAGQYLQEK+GGG FPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL
Sbjct: 339 TKEAGNIGLENAGQYLQEKFGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 398

Query: 186 RLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 245
           +LKKW+R+LITRS AIVPTIIVAL FD S D LDVLNEWLNVLQS+QIPFALIPL+ LVS
Sbjct: 399 KLKKWIRSLITRSFAIVPTIIVALFFDKS-DSLDVLNEWLNVLQSIQIPFALIPLITLVS 457

Query: 246 QEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAF 305
           +E +MG FKIG   + V+W VA L+I INGYLLL+FFSSE+ G+L  +++ V    Y +F
Sbjct: 458 KEKVMGVFKIGRNTQAVTWTVATLLITINGYLLLDFFSSEIRGLLSGSILCVAVLAYASF 517

Query: 306 IIYLVSRG 313
           ++YL+ RG
Sbjct: 518 VLYLILRG 525

Probable metal transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q65|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/302 (71%), Positives = 260/302 (86%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLIA MA+SFA MFGETKPSG ELLIG++VPKLSS+TI+QAVG+VGCIIMPHNVFLHSAL
Sbjct: 213 VLIAVMAVSFAIMFGETKPSGKELLIGLVVPKLSSRTIKQAVGIVGCIIMPHNVFLHSAL 272

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR ID NKK RVQEA+ YY+IES LAL+VSF IN+ VTTVFAKGFYG+EQA+ IGL N
Sbjct: 273 VQSRKIDTNKKSRVQEAVFYYNIESILALIVSFFINICVTTVFAKGFYGSEQADGIGLEN 332

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQ+KYG   FPILYIW IGLLA+GQSSTITGTYAGQF+MGGFLNLRLKKWLRA+IT
Sbjct: 333 AGQYLQQKYGTAFFPILYIWAIGLLASGQSSTITGTYAGQFVMGGFLNLRLKKWLRAMIT 392

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RS AI+PT+IVAL FDT +  +D+LNE LNVLQS+QIPFALIPL+ LVS+E +MG+F +G
Sbjct: 393 RSFAIIPTMIVALFFDTEDPTMDILNEALNVLQSIQIPFALIPLITLVSKEQVMGSFVVG 452

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITF 316
           PI K++SW+V V ++LINGYL+L F+++EV G L+ + + V  A Y+AFI+YL+ R  + 
Sbjct: 453 PITKVISWIVTVFLMLINGYLILSFYATEVRGALVRSSLCVVLAVYLAFIVYLIMRNTSL 512

Query: 317 SS 318
            S
Sbjct: 513 YS 514

Probable metal transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SN36|NRAM5_ARATH Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/294 (73%), Positives = 253/294 (86%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLIATMALSFAWMF ETKPS  EL IGI++PKL SKTI++AVGVVGC+I PHNVFLHSAL
Sbjct: 213 VLIATMALSFAWMFNETKPSVEELFIGIIIPKLGSKTIREAVGVVGCVITPHNVFLHSAL 272

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR  D  +  RVQEAL YY+IES+ AL VSFMINLFVT VFAKGFYGT+QA++IGLVN
Sbjct: 273 VQSRKTDPKEINRVQEALNYYTIESSAALFVSFMINLFVTAVFAKGFYGTKQADSIGLVN 332

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AG YLQEKYGGG+FPILYIWGIGLLAAGQSSTITGTYAGQFIM GFL+L++++WL A IT
Sbjct: 333 AGYYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMEGFLDLQMEQWLSAFIT 392

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RS AIVPT+ VA++F+TSE  LDVLNEWLN+LQS+QIPFA+IPLL +VS EHIMG FKIG
Sbjct: 393 RSFAIVPTMFVAIMFNTSEGSLDVLNEWLNILQSMQIPFAVIPLLTMVSNEHIMGVFKIG 452

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLV 310
           P L+ ++W VAV V++INGYLLL+FF +EV G L+  ++     GY++FIIYLV
Sbjct: 453 PSLEKLAWTVAVFVMMINGYLLLDFFMAEVEGFLVGFLVFGGVVGYISFIIYLV 506

Seems to be involved in iron uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/247 (48%), Positives = 169/247 (68%), Gaps = 8/247 (3%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65
           +G+  L      LIA MA+SF   +  +KP   E++ G+ +P  S   I QAVG++G ++
Sbjct: 206 YGIRKLEAFFCSLIAIMAISFGVEYIISKPDQIEVVKGVFIPLCSQNNISQAVGILGAVV 265

Query: 66  MPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG 125
           MPHN++LHSALVQSR+ID   + +V+ A +Y  +ES  AL++SF+INL + +VFAKGFYG
Sbjct: 266 MPHNIYLHSALVQSREIDRKSETQVKIANKYNRLESAFALIISFIINLLLVSVFAKGFYG 325

Query: 126 TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185
             +   IGL +A  +L +KYG       YIW IGL +AGQ ST+TGTY+GQF+M GFL L
Sbjct: 326 --ETTEIGLSSAADFLMDKYGK---VAKYIWAIGLFSAGQCSTMTGTYSGQFVMEGFLKL 380

Query: 186 RLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 245
           ++  W R LITR  AIVP ++VA++   S   LD L++WLN+LQS+Q+PFA++P+L   S
Sbjct: 381 KIAPWKRLLITRCTAIVPAMVVAIL---STSHLDSLDQWLNILQSIQLPFAVVPVLLFTS 437

Query: 246 QEHIMGT 252
            E IMG+
Sbjct: 438 SEKIMGS 444

Depletes iron from the phagolysosome in an ATP-dependent process. May rather act as a symporter of protons and metal cations in an ATP-dependent process. Nramp1 overexpression protected cells from L. pneumophila infection.

Dictyostelium discoideum (taxid: 44689)

>sp|P49283|MVL_DROME Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2

 Score =  228 bits (582), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 146/335 (43%), Positives = 202/335 (60%), Gaps = 34/335 (10%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVP---KLSSKTIQQAVGVVG 62
           +GL  L  L   LI  MA+SF + +  + P+  E+L G+ VP     +S  + QAVGVVG
Sbjct: 209 YGLRKLEFLFGTLITIMAVSFGYEYIVSAPNQGEVLEGMFVPWCSNCNSNVLLQAVGVVG 268

Query: 63  CIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKG 122
            +IMPHN++LHSALV+SRDID  +  +V EA  Y+ IE+++AL VSF+INLFV  VFA G
Sbjct: 269 AVIMPHNLYLHSALVKSRDIDRRQTKKVSEANFYFFIEASVALFVSFIINLFVVAVFAHG 328

Query: 123 FYGTEQANNIGLVNAGQYLQEK-------------------YGGGLF-------PILYIW 156
            YG    N++  V   + + E                    Y GGLF         +YIW
Sbjct: 329 MYGKTN-NDVVEVCKDKSMYEDAKMSFVDNVNGTAIIDADLYKGGLFLGCTFGAVAMYIW 387

Query: 157 GIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSED 216
           G+G+LAAGQSST+TGTYAGQF M GFLNL+  +W R L+TR  AI+PT  +A+ F   ED
Sbjct: 388 GVGILAAGQSSTMTGTYAGQFSMEGFLNLQWPRWCRVLVTRCIAIIPTFCLAM-FSKMED 446

Query: 217 MLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGY 276
            L  +N+ LN + S+Q+PFA IP +   S   IMG F  G   K+VS L+ ++VI +N Y
Sbjct: 447 -LTSMNDILNAVMSLQLPFAAIPTIAFTSCAAIMGEFVNGLGNKIVSILLTIVVIGVNLY 505

Query: 277 -LLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLV 310
            ++++  + E+ G L+A V  +F   Y+ F +YLV
Sbjct: 506 FVVVQVENMEIKGGLLALVC-IFAILYILFNLYLV 539

Putative transporter required for normal taste behavior. May be a nitrite/nitrate transporter.

Drosophila melanogaster (taxid: 7227)

>sp|P49281|NRAM2_HUMAN Natural resistance-associated macrophage protein 2 OS=Homo sapiens GN=SLC11A2 PE=1 SV=2

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/285 (43%), Positives = 185/285 (64%), Gaps = 25/285 (8%)

Query: 18  LIATMALSFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHS 74
           LI  MAL+F + +   KPS S++L G+ VP  S   +  I+QAVG+VG +IMPHN++LHS
Sbjct: 214 LITIMALTFGYEYVTVKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHS 273

Query: 75  ALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGT------EQ 128
           ALV+SR ++ N K  V+EA +Y+ IES +AL VSF+IN+FV +VFA+ F+G       E 
Sbjct: 274 ALVKSRQVNRNNKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVVEV 333

Query: 129 ANNIGLVNAGQYLQEK-------YGGGLF-------PILYIWGIGLLAAGQSSTITGTYA 174
             N    +AG + ++        Y GG+          LYIW +G+LAAGQSST+TGTY+
Sbjct: 334 CTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYS 393

Query: 175 GQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIP 234
           GQF+M GFLNL+  ++ R ++TRS AI+PT++VA+  D   + L  +N++LNVLQS+Q+P
Sbjct: 394 GQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVAVFQDV--EHLTGMNDFLNVLQSLQLP 451

Query: 235 FALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLL 279
           FALIP+L   S   +M  F  G   ++   ++ +++  IN Y ++
Sbjct: 452 FALIPILTFTSLRPVMSDFANGLGWRIAGGILVLIICSINMYFVV 496

Important in metal transport, in particular iron. Can also transport manganese, cobalt, cadmium, nickel, vanadium and lead. Involved in apical iron uptake into duodenal enterocytes. Involved in iron transport from acidified endosomes into the cytoplasm of erythroid precursor cells. May play an important role in hepatic iron accumulation and tissue iron distribution.

Homo sapiens (taxid: 9606)

>sp|P51027|NRAM1_CHICK Natural resistance-associated macrophage protein 1 OS=Gallus gallus GN=SLC11A1 PE=2 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/317 (41%), Positives = 190/317 (59%), Gaps = 27/317 (8%)

Query: 18  LIATMALSFAWMFGETKPSGSELLIGILVP---KLSSKTIQQAVGVVGCIIMPHNVFLHS 74
           LI  MAL+F + +   +P+ +E+L GI +P       + + QAVG+VG IIMPHN+FLHS
Sbjct: 207 LITIMALTFGYEYVMVRPAQTEVLKGIFLPYCPGCGREELLQAVGIVGAIIMPHNIFLHS 266

Query: 75  ALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQAN---- 130
           +LV++R ID +KK  V+EA  Y+  ES LAL VSF+INLFV  VF + FY     +    
Sbjct: 267 SLVKTRAIDRSKKEEVKEANMYFLTESCLALFVSFLINLFVMAVFGEAFYHQRNEDVHNK 326

Query: 131 ----------NIGLVNAGQYLQEKYGGGLF-------PILYIWGIGLLAAGQSSTITGTY 173
                     +I  +N      + Y GG+          LYIW +G+LAAGQSST+TGTY
Sbjct: 327 CVNSSVSRYASIFPINNETVSVDIYQGGVILGCYFGAAALYIWAVGILAAGQSSTMTGTY 386

Query: 174 AGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQI 233
           AGQF+M GFL LR  ++ R L TRS AI+PT+ VA   D S+  L  +N+ LNVLQS+ +
Sbjct: 387 AGQFVMEGFLQLRWSRFTRVLFTRSLAILPTLFVAAFRDVSQ--LTGMNDLLNVLQSILL 444

Query: 234 PFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIAT 293
           PFA++P+L   S   +M  F  G + +++  L+  LV  IN Y +++F  + + G+    
Sbjct: 445 PFAVLPVLTFTSLRPLMHDFANGLLGQVLMSLITGLVCAINVYFVVDFLPT-LRGLGYLI 503

Query: 294 VIGVFTAGYVAFIIYLV 310
            +G+    YVAF+ YL+
Sbjct: 504 PLGLLLVAYVAFVTYLL 520

Divalent transition metal (iron and manganese) transporter involved in iron metabolism and host resistance to certain pathogens. Macrophage-specific membrane transport function. Controls natural resistance to infection with intracellular parasites. Pathogen resistance involves sequestration of Fe(2+) and Mn(2+), cofactors of both prokaryotic and eukaryotic catalases and superoxide dismutases, not only to protect the macrophage against its own generation of reactive oxygen species, but to deny the cations to the pathogen for synthesis of its protective enzymes.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
255567945	509	natural resistance-associated macrophage	0.939	0.609	0.867	1e-152
296087363	410	unnamed protein product [Vitis vinifera]	0.915	0.736	0.857	1e-148
225438902	520	PREDICTED: metal transporter Nramp3 [Vit	0.915	0.580	0.857	1e-148
356541715	506	PREDICTED: metal transporter Nramp3-like	0.924	0.602	0.826	1e-145
351722293	516	ferrous ion membrane transport protein D	0.984	0.629	0.776	1e-144
356496941	507	PREDICTED: metal transporter Nramp3-like	0.921	0.599	0.819	1e-144
357482723	514	Natural resistance-associated macrophage	0.951	0.610	0.816	1e-143
356511925	516	PREDICTED: metal transporter Nramp3-like	0.972	0.622	0.789	1e-143
348647349	504	divalent metal transporter 1 [Arachis hy	0.933	0.611	0.801	1e-142
224115064	491	nramp transporter [Populus trichocarpa]	0.906	0.608	0.839	1e-142

>gi|255567945|ref|XP_002524950.1| natural resistance-associated macrophage protein, putative [Ricinus communis] gi|223535785|gb|EEF37447.1| natural resistance-associated macrophage protein, putative [Ricinus communis]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/310 (86%), Positives = 289/310 (93%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLIATMALSFAWMFGETKP G ELL+G+L+PKLSSKTIQQAVGVVGCIIMPHNVFLHSAL
Sbjct: 196 VLIATMALSFAWMFGETKPDGMELLLGVLIPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 255

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSRD+D++KKGRVQEALRYYSIEST+ALV+SF+INLFVTTVFAK FYGTE AN+IGLVN
Sbjct: 256 VQSRDVDHSKKGRVQEALRYYSIESTVALVISFVINLFVTTVFAKAFYGTELANSIGLVN 315

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQ KYGGGLFPILYIW IGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT
Sbjct: 316 AGQYLQNKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 375

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RSCAIVPT+IVALVFDTSED LDVLNEWLNVLQSVQIPFALIPLL LVS+E IMGTFKIG
Sbjct: 376 RSCAIVPTMIVALVFDTSEDTLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIG 435

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITF 316
           P+LKMVSWLVA LVI+INGYLL+EFFS+EVNGV  AT + +FTA YVAFI+YLVSRGI F
Sbjct: 436 PLLKMVSWLVAALVIVINGYLLIEFFSTEVNGVPFATAVCIFTAAYVAFILYLVSRGIAF 495

Query: 317 SSWRAHPKLV 326
           +SW    K V
Sbjct: 496 ASWCRPQKQV 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087363|emb|CBI33737.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/302 (85%), Positives = 283/302 (93%)

Query: 18  LIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALV 77
           LIATMA+SFAWMFGE KPSG ELL+GIL+PKLSSKTI+QAVGVVGCIIMPHNVFLHSALV
Sbjct: 95  LIATMAISFAWMFGEAKPSGVELLLGILIPKLSSKTIKQAVGVVGCIIMPHNVFLHSALV 154

Query: 78  QSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNA 137
           QSR+ID++KKGRVQEAL YYSIEST+AL++SF+INLFVTTVFAKGFYGTEQANNIGLVNA
Sbjct: 155 QSREIDHSKKGRVQEALNYYSIESTVALILSFIINLFVTTVFAKGFYGTEQANNIGLVNA 214

Query: 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITR 197
           GQYLQEKYGGG FPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RALITR
Sbjct: 215 GQYLQEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITR 274

Query: 198 SCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGP 257
           SCAIVPT+IVALVFDTSED LDV+NEWLNVLQS+QIPFALIPLL LVS+E IMGTFKIGP
Sbjct: 275 SCAIVPTMIVALVFDTSEDTLDVMNEWLNVLQSIQIPFALIPLLCLVSKEQIMGTFKIGP 334

Query: 258 ILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFS 317
           +LK+V+WLVA LVI+INGYLL++FFSSEVNG+LI   I  FTA YVAFIIYLV R + F 
Sbjct: 335 VLKVVAWLVAALVIIINGYLLVDFFSSEVNGLLIGFFICTFTAAYVAFIIYLVFRAVNFY 394

Query: 318 SW 319
            W
Sbjct: 395 PW 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438902|ref|XP_002283902.1| PREDICTED: metal transporter Nramp3 [Vitis vinifera]

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/302 (85%), Positives = 283/302 (93%)

Query: 18  LIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALV 77
           LIATMA+SFAWMFGE KPSG ELL+GIL+PKLSSKTI+QAVGVVGCIIMPHNVFLHSALV
Sbjct: 205 LIATMAISFAWMFGEAKPSGVELLLGILIPKLSSKTIKQAVGVVGCIIMPHNVFLHSALV 264

Query: 78  QSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNA 137
           QSR+ID++KKGRVQEAL YYSIEST+AL++SF+INLFVTTVFAKGFYGTEQANNIGLVNA
Sbjct: 265 QSREIDHSKKGRVQEALNYYSIESTVALILSFIINLFVTTVFAKGFYGTEQANNIGLVNA 324

Query: 138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITR 197
           GQYLQEKYGGG FPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RALITR
Sbjct: 325 GQYLQEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITR 384

Query: 198 SCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGP 257
           SCAIVPT+IVALVFDTSED LDV+NEWLNVLQS+QIPFALIPLL LVS+E IMGTFKIGP
Sbjct: 385 SCAIVPTMIVALVFDTSEDTLDVMNEWLNVLQSIQIPFALIPLLCLVSKEQIMGTFKIGP 444

Query: 258 ILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFS 317
           +LK+V+WLVA LVI+INGYLL++FFSSEVNG+LI   I  FTA YVAFIIYLV R + F 
Sbjct: 445 VLKVVAWLVAALVIIINGYLLVDFFSSEVNGLLIGFFICTFTAAYVAFIIYLVFRAVNFY 504

Query: 318 SW 319
            W
Sbjct: 505 PW 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541715|ref|XP_003539319.1| PREDICTED: metal transporter Nramp3-like [Glycine max]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/305 (82%), Positives = 285/305 (93%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLI  MALSFAWMFGE KP+G ++L+GILVPKLSS+TIQQAVGVVGCIIMPHNV+LHSAL
Sbjct: 191 VLIGVMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVYLHSAL 250

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR +D +KKGRVQEAL YYSIEST+AL+VSF+IN+FVTTVFAKGFYGTE AN+IGLVN
Sbjct: 251 VQSRQVDPSKKGRVQEALNYYSIESTIALIVSFVINIFVTTVFAKGFYGTEIANSIGLVN 310

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RALIT
Sbjct: 311 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALIT 370

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RS AI+PTIIVAL+FDTSE+ LDVLNEWLNVLQSVQIPFALIPLL LVS+E IMG+F+IG
Sbjct: 371 RSFAIIPTIIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIG 430

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITF 316
           P+LK++SWLVA LVI+INGYLLLEFFSSEVNG + ATV+ V TA YVAF++YL+SR IT+
Sbjct: 431 PVLKIISWLVAALVIVINGYLLLEFFSSEVNGAVFATVVCVLTAAYVAFVLYLISRAITY 490

Query: 317 SSWRA 321
           + W++
Sbjct: 491 TPWQS 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722293|ref|NP_001236727.1| ferrous ion membrane transport protein DMT1 [Glycine max] gi|31322147|gb|AAO39834.1| ferrous ion membrane transport protein DMT1 [Glycine max]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/327 (77%), Positives = 289/327 (88%), Gaps = 2/327 (0%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65
           +G+  L     +LI  MA+SFAWMFGE KPSG ELL+G+L+PKLSSKTIQQAVGVVGC+I
Sbjct: 189 YGVRTLEAFFAILIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSKTIQQAVGVVGCLI 248

Query: 66  MPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG 125
           MPHNVFLHSALVQSR +D +KKGRVQEAL YYSIESTLALVVSF+IN+FVTTVFAKGFYG
Sbjct: 249 MPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYG 308

Query: 126 TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185
           +E AN+IGLVNAGQYL+E YGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL
Sbjct: 309 SELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 368

Query: 186 RLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 245
           RLKKW+RALITRSCAI+PT+IVAL+FDTSE+ LDVLNEWLNVLQSVQIPFALIPLL LVS
Sbjct: 369 RLKKWMRALITRSCAIIPTMIVALLFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVS 428

Query: 246 QEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAF 305
           +E IMGTF+IG +LK  SWLVA LVI+INGYLL EFFSSEVNG +I TV+GV TA YVAF
Sbjct: 429 KEQIMGTFRIGAVLKTTSWLVAALVIVINGYLLTEFFSSEVNGPMIGTVVGVITAAYVAF 488

Query: 306 IIYLVSRGITFSSWRA--HPKLVPGTE 330
           ++YL+ + IT+  W++   PK +  +E
Sbjct: 489 VVYLIWQAITYLPWQSVTQPKTIAHSE 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496941|ref|XP_003517323.1| PREDICTED: metal transporter Nramp3-like [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 284/304 (93%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLI  MALSFAWMFGE KP+G ++L+GILVPKLSS+TIQQAVGVVGC+IMPHNV+LHSAL
Sbjct: 191 VLIGVMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCVIMPHNVYLHSAL 250

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR +D +KKGRVQEAL YYSIEST+AL+VSF+IN+FVTTVFAKGFYGTE AN+IGLVN
Sbjct: 251 VQSRRVDPSKKGRVQEALNYYSIESTIALIVSFVINIFVTTVFAKGFYGTEIANSIGLVN 310

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RALIT
Sbjct: 311 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALIT 370

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RS AI+PT+IVAL+FDTSE+ LDVLNEWLNVLQSVQIPFAL+PLL LVS+E IMG+F+IG
Sbjct: 371 RSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALVPLLCLVSKEQIMGSFRIG 430

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITF 316
           P+LK++SWLVA LVI+INGYLLLEFFSSEVNG + ATV+ V TA YVAF++YL+SR IT+
Sbjct: 431 PVLKIISWLVAALVIVINGYLLLEFFSSEVNGAVFATVVCVLTAAYVAFVLYLISRAITY 490

Query: 317 SSWR 320
           + W+
Sbjct: 491 TPWQ 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482723|ref|XP_003611648.1| Natural resistance-associated macrophage protein [Medicago truncatula] gi|355512983|gb|AES94606.1| Natural resistance-associated macrophage protein [Medicago truncatula]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/316 (81%), Positives = 282/316 (89%), Gaps = 2/316 (0%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLIA MALSFAWMFGE KP G ++L+GILVPKLSS+TIQQAVGVVGCIIMPHNVFLHSAL
Sbjct: 198 VLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSAL 257

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR +D  KKGRVQEAL YYSIEST+ALVVSF+IN+FVTTVFAKGFYGTE AN IGLVN
Sbjct: 258 VQSRQVDPKKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVN 317

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQEKYGGG+FPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL+LKKW+RALIT
Sbjct: 318 AGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALIT 377

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RS AIVPT+IVAL+FD+SE+ LDVLNEWLNVLQSVQIPFALIPLL LVS+E IMGTFKIG
Sbjct: 378 RSFAIVPTMIVALIFDSSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKERIMGTFKIG 437

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITF 316
            +LK VSWLVA LVI+INGYLLLEFFSSEV+G +  TV+   TA YVAFIIYL+S  ITF
Sbjct: 438 SVLKTVSWLVAALVIVINGYLLLEFFSSEVSGAVFTTVVCAITAAYVAFIIYLISSSITF 497

Query: 317 SSWRA--HPKLVPGTE 330
           S W++    K V  TE
Sbjct: 498 SPWQSLTRSKTVTTTE 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511925|ref|XP_003524672.1| PREDICTED: metal transporter Nramp3-like [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/323 (78%), Positives = 284/323 (87%), Gaps = 2/323 (0%)

Query: 6   FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCII 65
           +G+  L     VLI  MA+SFAWMFGE KPSG ELL+G+L+PKLSSKTIQQAVGVVGC+I
Sbjct: 189 YGVRTLEAFFAVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSKTIQQAVGVVGCLI 248

Query: 66  MPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG 125
           MPHNVFLHSALVQSR +D +KKGRVQEAL YYSIESTLALVVSF+IN+FVTTVFAKGFYG
Sbjct: 249 MPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYG 308

Query: 126 TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 185
           +E AN+IGLVNAGQYL+E YGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL
Sbjct: 309 SELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL 368

Query: 186 RLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 245
           RLKKW+RALITRSCAI PT+IVAL+FDTSE+ LDVLNEWLNVLQSVQIPFALIPLL LVS
Sbjct: 369 RLKKWMRALITRSCAIFPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVS 428

Query: 246 QEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAF 305
           +E IMGTF+IG +LK  SWLVA LVI+INGYLL EFFSSEVNG +I  V+G  TA YVAF
Sbjct: 429 KEQIMGTFRIGAVLKTTSWLVAALVIVINGYLLTEFFSSEVNGPMIGAVVGAITAAYVAF 488

Query: 306 IIYLVSRGITFSSWRA--HPKLV 326
           IIYL+ R IT+  W++   PK +
Sbjct: 489 IIYLIWRAITYLPWQSVTQPKTI 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|348647349|gb|AEP81324.1| divalent metal transporter 1 [Arachis hypogaea]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/308 (80%), Positives = 281/308 (91%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLI  MALSFAWMFGE KP+G ++L+G+LVPKLSS+TI+QAVGVVGCIIMPHNVFLHSAL
Sbjct: 189 VLIGIMALSFAWMFGEAKPNGVDVLLGVLVPKLSSRTIKQAVGVVGCIIMPHNVFLHSAL 248

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR ID +KKGRVQEAL YYSIESTLAL VSF+IN+FVTTVFAKGFYGTE A++IGLVN
Sbjct: 249 VQSRQIDQSKKGRVQEALNYYSIESTLALAVSFIINIFVTTVFAKGFYGTEIADSIGLVN 308

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AG YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RALIT
Sbjct: 309 AGTYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALIT 368

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           R CAI+PT+IVAL+FDTSE+ LD+LNEWLNVLQSVQIPFALIPLL LVS+E IMGTF+IG
Sbjct: 369 RCCAIIPTMIVALIFDTSEESLDILNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIG 428

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITF 316
           P+LK+ SWLVA LVI+INGYLLL+FFSSEVNG + A V+   TA YVAF+IYL++R ++F
Sbjct: 429 PVLKIFSWLVAALVIVINGYLLLDFFSSEVNGAVFAVVVCALTAAYVAFVIYLIARAVSF 488

Query: 317 SSWRAHPK 324
           S W++  +
Sbjct: 489 SPWQSLDR 496

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115064|ref|XP_002332228.1| nramp transporter [Populus trichocarpa] gi|222831841|gb|EEE70318.1| nramp transporter [Populus trichocarpa]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/299 (83%), Positives = 274/299 (91%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSAL 76
           VLI  MA++F WMF + KPS SEL +GIL+PKLSS+TIQQAVGVVGCIIMPHNVFLHSAL
Sbjct: 193 VLIGIMAVTFGWMFADAKPSASELFLGILIPKLSSRTIQQAVGVVGCIIMPHNVFLHSAL 252

Query: 77  VQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVN 136
           VQSR+ID+NKK RVQEALRYYSIEST ALV+SF+INLFVTTVFAKGFYGTE AN+IGLVN
Sbjct: 253 VQSREIDHNKKDRVQEALRYYSIESTTALVISFVINLFVTTVFAKGFYGTELANSIGLVN 312

Query: 137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 196
           AGQYLQ+KYGGG FPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT
Sbjct: 313 AGQYLQDKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALIT 372

Query: 197 RSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIG 256
           RSCAI+PT+IVALVFDTSED LDVLNEWLNVLQS+QIPFALIPLL LVS+E IMGTFKIG
Sbjct: 373 RSCAIIPTMIVALVFDTSEDSLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGTFKIG 432

Query: 257 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGIT 315
           PILKMV+WLVA LV++INGYLLL+FF +EV GV   TV+  FT  YVAFIIYL+SRG T
Sbjct: 433 PILKMVAWLVAALVMVINGYLLLDFFFNEVTGVAFTTVVCGFTGAYVAFIIYLISRGFT 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2045344	509	NRAMP3 "natural resistance-ass	0.909	0.589	0.796	1.7e-128
TAIR|locus:2036751	530	NRAMP2 "NRAMP metal ion transp	0.909	0.566	0.790	1.6e-125
TAIR|locus:2158242	512	NRAMP4 "natural resistance ass	0.912	0.587	0.730	1.5e-120
TAIR|locus:2124172	530	NRAMP5 [Arabidopsis thaliana (	0.909	0.566	0.724	1.5e-113
DICTYBASE|DDB_G0276973	533	nramp1 "solute carrier family	0.881	0.545	0.443	1.4e-62
ZFIN|ZDB-GENE-021115-1	547	slc11a2 "solute carrier family	0.475	0.287	0.462	8.3e-60
UNIPROTKB|F8W1P7	482	SLC11A2 "Natural resistance-as	0.6	0.410	0.370	5.4e-59
WB|WBGene00004878	560	smf-3 [Caenorhabditis elegans	0.554	0.326	0.435	1.1e-58
UNIPROTKB|P49281	568	SLC11A2 "Natural resistance-as	0.6	0.348	0.370	5.6e-58
FB|FBgn0011672	596	Mvl "Malvolio" [Drosophila mel	0.566	0.313	0.422	6.5e-58

TAIR|locus:2045344 NRAMP3 "natural resistance-associated macrophage protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
 Identities = 239/300 (79%), Positives = 274/300 (91%)

Query:    20 ATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQS 79
             ATM +SFAWMFG+ KPSGSELLIGILVPKLSS+TIQ+AVGVVGCIIMPHNVFLHSALVQS
Sbjct:   202 ATMGVSFAWMFGQAKPSGSELLIGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQS 261

Query:    80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQ 139
             R++D  +K RVQEAL YY+IEST+AL +SF+INLFVTTVFAKGFY T+ AN+IGLVNAGQ
Sbjct:   262 REVDKRQKYRVQEALNYYTIESTIALFISFLINLFVTTVFAKGFYNTDLANSIGLVNAGQ 321

Query:   140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSC 199
             YLQEKYGGG+FPILYIW IGLLAAGQSSTITGTYAGQFIMGGFLN ++KKWLRALITRSC
Sbjct:   322 YLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFKMKKWLRALITRSC 381

Query:   200 AIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPIL 259
             AI+PTIIVALVFD+SE  LDVLNEWLNVLQS+QIPFALIPLL LVS+E IMG+FKIGP+ 
Sbjct:   382 AIIPTIIVALVFDSSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGSFKIGPLY 441

Query:   260 KMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSW 319
             K ++WLVA LVI+INGYLLLEFFS+EV+G++    + +FTA Y AFI+YL++RGITF+ W
Sbjct:   442 KTIAWLVAALVIMINGYLLLEFFSNEVSGIVYTGFVTLFTASYGAFILYLIARGITFTPW 501

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=TAS

GO:0006828 "manganese ion transport" evidence=RCA;IMP;TAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0015691 "cadmium ion transport" evidence=RCA;TAS

GO:0015692 "lead ion transport" evidence=TAS

GO:0030001 "metal ion transport" evidence=TAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2036751 NRAMP2 "NRAMP metal ion transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 238/301 (79%), Positives = 268/301 (89%)

Query:    20 ATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQS 79
             ATM LSFAWMFGETKPSG EL+IGIL+P+LSSKTI+QAVGVVGC+IMPHNVFLHSALVQS
Sbjct:   214 ATMGLSFAWMFGETKPSGKELMIGILLPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQS 273

Query:    80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQ 139
             R ID  +K RVQEAL YY IES++AL +SFMINLFVTTVFAKGFYGTE+ANNIGLVNAGQ
Sbjct:   274 RKIDPKRKSRVQEALNYYLIESSVALFISFMINLFVTTVFAKGFYGTEKANNIGLVNAGQ 333

Query:   140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSC 199
             YLQEK+GGGL PILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKW+RA+ITRSC
Sbjct:   334 YLQEKFGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRAVITRSC 393

Query:   200 AIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPIL 259
             AIVPT+IVA+VF+TSE  LDVLNEWLNVLQSVQIPFAL+PLL LVS+E IMG FKIGPIL
Sbjct:   394 AIVPTMIVAIVFNTSEASLDVLNEWLNVLQSVQIPFALLPLLTLVSKEEIMGDFKIGPIL 453

Query:   260 KMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSS- 318
             + ++W VA LV++INGYLLL+FF SEV+G L    + V+T  Y+AFI+YL+S    F S 
Sbjct:   454 QRIAWTVAALVMIINGYLLLDFFVSEVDGFLFGVTVCVWTTAYIAFIVYLISHSNFFPSP 513

Query:   319 W 319
             W
Sbjct:   514 W 514

GO:0005215 "transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

TAIR|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
 Identities = 220/301 (73%), Positives = 266/301 (88%)

Query:    20 ATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQS 79
             ATMAL+FAWMFG+TKPSG+ELL+G LVPKLSS+TI+QAVG+VGCIIMPHNVFLHSALVQS
Sbjct:   198 ATMALAFAWMFGQTKPSGTELLVGALVPKLSSRTIKQAVGIVGCIIMPHNVFLHSALVQS 257

Query:    80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQ 139
             R++D  K+ RV+EAL+YYSIEST AL VSF+IN+FVTTVFAK FYGTE A+ IGL NAGQ
Sbjct:   258 REVDPKKRFRVKEALKYYSIESTGALAVSFIINVFVTTVFAKSFYGTEIADTIGLANAGQ 317

Query:   140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSC 199
             YLQ+KYGGG FPILYIW IG+LAAGQSSTITGTYAGQFIMGGFLNL++KKW+RALITRSC
Sbjct:   318 YLQDKYGGGFFPILYIWAIGVLAAGQSSTITGTYAGQFIMGGFLNLKMKKWVRALITRSC 377

Query:   200 AIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPIL 259
             AI+PT+IVALVFD+S+ MLD LNEWLNVLQSVQIPFA+IPLL LVS E IMG+FKI P++
Sbjct:   378 AIIPTMIVALVFDSSDSMLDELNEWLNVLQSVQIPFAVIPLLCLVSNEQIMGSFKIQPLV 437

Query:   260 KMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSSW 319
             + +SW+VA LVI INGYL+++FFS     +++   + +F   YV F++YL+SRG+T++ W
Sbjct:   438 QTISWIVAALVIAINGYLMVDFFSGAATNLILLVPVIIFAIAYVVFVLYLISRGLTYTPW 497

Query:   320 R 320
             +
Sbjct:   498 Q 498

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=TAS

GO:0006828 "manganese ion transport" evidence=RCA;IMP;TAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0015691 "cadmium ion transport" evidence=RCA;TAS

GO:0015692 "lead ion transport" evidence=TAS

GO:0030001 "metal ion transport" evidence=TAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IGI

GO:0009624 "response to nematode" evidence=IEP

GO:0010039 "response to iron ion" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IMP

TAIR|locus:2124172 NRAMP5 [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 218/301 (72%), Positives = 255/301 (84%)

Query:    20 ATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQS 79
             ATMALSFAWMF ETKPS  EL IGI++PKL SKTI++AVGVVGC+I PHNVFLHSALVQS
Sbjct:   216 ATMALSFAWMFNETKPSVEELFIGIIIPKLGSKTIREAVGVVGCVITPHNVFLHSALVQS 275

Query:    80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQ 139
             R  D  +  RVQEAL YY+IES+ AL VSFMINLFVT VFAKGFYGT+QA++IGLVNAG 
Sbjct:   276 RKTDPKEINRVQEALNYYTIESSAALFVSFMINLFVTAVFAKGFYGTKQADSIGLVNAGY 335

Query:   140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSC 199
             YLQEKYGGG+FPILYIWGIGLLAAGQSSTITGTYAGQFIM GFL+L++++WL A ITRS 
Sbjct:   336 YLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMEGFLDLQMEQWLSAFITRSF 395

Query:   200 AIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPIL 259
             AIVPT+ VA++F+TSE  LDVLNEWLN+LQS+QIPFA+IPLL +VS EHIMG FKIGP L
Sbjct:   396 AIVPTMFVAIMFNTSEGSLDVLNEWLNILQSMQIPFAVIPLLTMVSNEHIMGVFKIGPSL 455

Query:   260 KMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVS-RGITFSS 318
             + ++W VAV V++INGYLLL+FF +EV G L+  ++     GY++FIIYLVS R    SS
Sbjct:   456 EKLAWTVAVFVMMINGYLLLDFFMAEVEGFLVGFLVFGGVVGYISFIIYLVSYRSSQSSS 515

Query:   319 W 319
             W
Sbjct:   516 W 516

GO:0005215 "transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0006828 "manganese ion transport" evidence=RCA

GO:0015691 "cadmium ion transport" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

DICTYBASE|DDB_G0276973 nramp1 "solute carrier family 11 member 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 133/300 (44%), Positives = 194/300 (64%)

Query:    20 ATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQS 79
             A MA+SF   +  +KP   E++ G+ +P  S   I QAVG++G ++MPHN++LHSALVQS
Sbjct:   220 AIMAISFGVEYIISKPDQIEVVKGVFIPLCSQNNISQAVGILGAVVMPHNIYLHSALVQS 279

Query:    80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQ 139
             R+ID   + +V+ A +Y  +ES  AL++SF+INL + +VFAKGFYG  +   IGL +A  
Sbjct:   280 REIDRKSETQVKIANKYNRLESAFALIISFIINLLLVSVFAKGFYG--ETTEIGLSSAAD 337

Query:   140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSC 199
             +L +KYG       YIW IGL +AGQ ST+TGTY+GQF+M GFL L++  W R LITR  
Sbjct:   338 FLMDKYGK---VAKYIWAIGLFSAGQCSTMTGTYSGQFVMEGFLKLKIAPWKRLLITRCT 394

Query:   200 AIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGT-FKIGPI 258
             AIVP ++VA++  TS   LD L++WLN+LQS+Q+PFA++P+L   S E IMG+ FK   +
Sbjct:   395 AIVPAMVVAIL-STSH--LDSLDQWLNILQSIQLPFAVVPVLLFTSSEKIMGSKFKNHWL 451

Query:   259 LKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRGITFSS 318
                    +++L+I IN YL++ F         + +++ +    Y  FI+YL      F+S
Sbjct:   452 NNQFVRFLSLLIIAINIYLIITFSMQISESAWMISIVSISFFFYFIFIVYLSMGQENFNS 511

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0034755 "iron ion transmembrane transport" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0009617 "response to bacterium" evidence=IMP

GO:0006909 "phagocytosis" evidence=IEP

GO:0006879 "cellular iron ion homeostasis" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0012506 "vesicle membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-021115-1 slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Danio rerio (taxid:7955)]

 Score = 362 (132.5 bits), Expect = 8.3e-60, Sum P(2) = 8.3e-60
 Identities = 74/160 (46%), Positives = 110/160 (68%)

Query:   153 LYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFD 212
             LYIW +G+LAAGQSST+TGTY+GQF+M GFLNLR  ++ R L+TRS AI PT++VA+  D
Sbjct:   359 LYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLRWSRFARVLLTRSIAIFPTLLVAVFQD 418

Query:   213 TSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVIL 272
                  L  +N++LNVLQS+Q+PFALIP+L   S   +M  F  G + K+   L+ +LV  
Sbjct:   419 VQH--LTGMNDFLNVLQSMQLPFALIPILTFTSLTSLMHDFANGLVWKIGGGLLILLVCA 476

Query:   273 INGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSR 312
             IN Y ++ + + ++N  ++  +  + +  Y++F+IYLV R
Sbjct:   477 INMYFVIVYVT-DLNSTVLYVLAALLSIAYLSFVIYLVWR 515

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IDA

GO:0042541 "hemoglobin biosynthetic process" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0046688 "response to copper ion" evidence=IDA

GO:0010039 "response to iron ion" evidence=IDA

GO:0010038 "response to metal ion" evidence=IDA

UNIPROTKB|F8W1P7 SLC11A2 "Natural resistance-associated macrophage protein 2" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 80/216 (37%), Positives = 126/216 (58%)

Query:   109 FMINLFVTTVFAK-GFYGTEQANNIGLVNAGQYLQEK-------YGGGLF------PI-L 153
             F++++F    F K      E   N    +AG + ++        Y GG+       P  L
Sbjct:   234 FVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAAL 293

Query:   154 YIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT 213
             YIW +G+LAAGQSST+TGTY+GQF+M GFLNL+  ++ R ++TRS AI+PT++VA VF  
Sbjct:   294 YIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVA-VFQD 352

Query:   214 SEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILI 273
              E +   +N++LNVLQS+Q+PFALIP+L   S   +M  F  G   ++   ++ +++  I
Sbjct:   353 VEHLTG-MNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAGGILVLIICSI 411

Query:   274 NGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYL 309
             N Y ++ +   ++  V +  V  V +  Y+ F+ YL
Sbjct:   412 NMYFVVVYVR-DLGHVALYVVAAVVSVAYLGFVFYL 446

GO:0005769 "early endosome" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005903 "brush border" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=IEA

GO:0015093 "ferrous iron transmembrane transporter activity" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IEA

GO:0070627 "ferrous iron import" evidence=IEA

WB|WBGene00004878 smf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 378 (138.1 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 84/193 (43%), Positives = 124/193 (64%)

Query:   123 FYGTE-QANNIG----LVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF 177
             FY  E  ANN      + +AG +L   +G  +F  LY+W +G+LAAGQSST+TGTYAGQF
Sbjct:   319 FYKVEFPANNDAAQSDIYHAGIFLGCTFG--IFA-LYVWAVGILAAGQSSTMTGTYAGQF 375

Query:   178 IMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFAL 237
              M GF+ ++L +W R LITRS AI+PT+ V ++F    D +  LN++LN LQ +Q+PFAL
Sbjct:   376 AMEGFIQIKLPQWKRILITRSLAILPTLAV-VIFSGGIDNISSLNDFLNCLQLIQLPFAL 434

Query:   238 IPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGV 297
             IP+L  VS  +IM  +K+  + K+VS +++++++ IN Y L  +  S      ++  I +
Sbjct:   435 IPVLTFVSDRNIMHEYKLASVSKVVSIVISLIILFINFYFLYSWIGSTFGYNAVSIPITI 494

Query:   298 FTA-GYVAFIIYL 309
             F A  Y+ FI YL
Sbjct:   495 FCAIFYIIFIAYL 507

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006950 "response to stress" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0010042 "response to manganese ion" evidence=IMP

GO:0010038 "response to metal ion" evidence=IGI

GO:0055071 "manganese ion homeostasis" evidence=IMP

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0046915 "transition metal ion transmembrane transporter activity" evidence=ISS

GO:0000041 "transition metal ion transport" evidence=ISS

UNIPROTKB|P49281 SLC11A2 "Natural resistance-associated macrophage protein 2" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 5.6e-58, Sum P(2) = 5.6e-58
 Identities = 80/216 (37%), Positives = 126/216 (58%)

Query:   109 FMINLFVTTVFAK-GFYGTEQANNIGLVNAGQYLQEK-------YGGGLF------PI-L 153
             F++++F    F K      E   N    +AG + ++        Y GG+       P  L
Sbjct:   313 FVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAAL 372

Query:   154 YIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT 213
             YIW +G+LAAGQSST+TGTY+GQF+M GFLNL+  ++ R ++TRS AI+PT++VA VF  
Sbjct:   373 YIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVA-VFQD 431

Query:   214 SEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILI 273
              E +   +N++LNVLQS+Q+PFALIP+L   S   +M  F  G   ++   ++ +++  I
Sbjct:   432 VEHLTG-MNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAGGILVLIICSI 490

Query:   274 NGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYL 309
             N Y ++ +   ++  V +  V  V +  Y+ F+ YL
Sbjct:   491 NMYFVVVYVR-DLGHVALYVVAAVVSVAYLGFVFYL 525

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005903 "brush border" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;IDA

GO:0012505 "endomembrane system" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=IEA;IDA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0070627 "ferrous iron import" evidence=IEA;IDA

GO:0003032 "detection of oxygen" evidence=IEP

GO:0010039 "response to iron ion" evidence=IEP

GO:0022890 "inorganic cation transmembrane transporter activity" evidence=IGI

GO:0005769 "early endosome" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0070835 "chromium ion transmembrane transporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IMP;IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0015085 "calcium ion transmembrane transporter activity" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0070826 "paraferritin complex" evidence=IDA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0015684 "ferrous iron transport" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0055037 "recycling endosome" evidence=IDA

GO:0006824 "cobalt ion transport" evidence=IDA

GO:0070574 "cadmium ion transmembrane transport" evidence=IDA

GO:0006828 "manganese ion transport" evidence=IDA

GO:0015675 "nickel cation transport" evidence=IDA

GO:0015676 "vanadium ion transport" evidence=IDA

GO:0015692 "lead ion transport" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0045178 "basal part of cell" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0015295 "solute:hydrogen symporter activity" evidence=IDA

GO:0015093 "ferrous iron transmembrane transporter activity" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0005385 "zinc ion transmembrane transporter activity" evidence=IDA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=IDA

GO:0015094 "lead ion transmembrane transporter activity" evidence=IDA

GO:0015100 "vanadium ion transmembrane transporter activity" evidence=IDA

GO:0015099 "nickel cation transmembrane transporter activity" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0031902 "late endosome membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IMP

GO:0005375 "copper ion transmembrane transporter activity" evidence=IDA

GO:0006825 "copper ion transport" evidence=IDA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IMP

GO:0035434 "copper ion transmembrane transport" evidence=IDA

GO:0071421 "manganese ion transmembrane transport" evidence=IDA

GO:0035444 "nickel cation transmembrane transport" evidence=IDA

GO:0071577 "zinc ion transmembrane transport" evidence=IDA

FB|FBgn0011672 Mvl "Malvolio" [Drosophila melanogaster (taxid:7227)]

 Score = 353 (129.3 bits), Expect = 6.5e-58, Sum P(2) = 6.5e-58
 Identities = 84/199 (42%), Positives = 121/199 (60%)

Query:   121 KGFYGTEQANNIGLVNAGQYLQ-EKYGGGLF-------PILYIWGIGLLAAGQSSTITGT 172
             K  Y   + + +  VN    +  + Y GGLF         +YIWG+G+LAAGQSST+TGT
Sbjct:   344 KSMYEDAKMSFVDNVNGTAIIDADLYKGGLFLGCTFGAVAMYIWGVGILAAGQSSTMTGT 403

Query:   173 YAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQ 232
             YAGQF M GFLNL+  +W R L+TR  AI+PT  +A+ F   ED+   +N+ LN + S+Q
Sbjct:   404 YAGQFSMEGFLNLQWPRWCRVLVTRCIAIIPTFCLAM-FSKMEDLTS-MNDILNAVMSLQ 461

Query:   233 IPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGY-LLLEFFSSEVNGVLI 291
             +PFA IP +   S   IMG F  G   K+VS L+ ++VI +N Y ++++  + E+ G L+
Sbjct:   462 LPFAAIPTIAFTSCAAIMGEFVNGLGNKIVSILLTIVVIGVNLYFVVVQVENMEIKGGLL 521

Query:   292 ATVIGVFTAGYVAFIIYLV 310
             A V  +F   Y+ F +YLV
Sbjct:   522 ALVC-IFAILYILFNLYLV 539

GO:0050916 "sensory perception of sweet taste" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=ISM;NAS

GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=IMP

GO:0055076 "transition metal ion homeostasis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0006825 "copper ion transport" evidence=IMP

GO:0055070 "copper ion homeostasis" evidence=IMP

GO:0044444 "cytoplasmic part" evidence=IDA

GO:0015677 "copper ion import" evidence=IMP

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0070838 "divalent metal ion transport" evidence=IGI

GO:0015293 "symporter activity" evidence=IGI

GO:0033212 "iron assimilation" evidence=IDA

GO:0060586 "multicellular organismal iron ion homeostasis" evidence=IDA

GO:0046718 "viral entry into host cell" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QN30	NRAM6_ORYSJ	No assigned EC number	0.7402	0.9303	0.5674	yes	no
Q9SNV9	NRAM3_ARATH	No assigned EC number	0.7770	0.9515	0.6168	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
pfam01566	364	pfam01566, Nramp, Natural resistance-associated ma	1e-59
TIGR01197	390	TIGR01197, nramp, NRAMP (natural resistance-associ	2e-59
PRK00701	439	PRK00701, PRK00701, manganese transport protein Mn	3e-58
COG1914	416	COG1914, MntH, Mn2+ and Fe2+ transporters of the N	2e-39

>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein

 Score =  195 bits (497), Expect = 1e-59
 Identities = 92/248 (37%), Positives = 132/248 (53%), Gaps = 10/248 (4%)

Query: 16  IVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSK-TIQQAVGVVGCIIMPHNVFLHS 74
           I L+A +ALSF       KP   E+  G++VP L    ++  A+ ++G  +MPHN+FLHS
Sbjct: 121 IALVAVIALSFIAELFLVKPDWGEVAAGLVVPSLPGSGSLLLAIAILGATVMPHNLFLHS 180

Query: 75  ALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGL 134
           +LVQ R    +     + ALRY  I++ +ALV++ +IN  +  V A   +G    +    
Sbjct: 181 SLVQERGWTIDDDAA-RRALRYARIDTIIALVLAGLINAAILIVAAAVLHGAGGTDVTTA 239

Query: 135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRAL 194
            +A   L+   G        ++ +GLLAAG SSTITGT AG ++M GFL  R+  WLR L
Sbjct: 240 ADAAAALEPLLGPKAAS--VLFALGLLAAGLSSTITGTLAGAYVMEGFLGWRIPLWLRRL 297

Query: 195 ITRSCAIVPTIIVALVF-----DTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHI 249
           ITR+ A  P + V L+            + +L     VL S+ +PFALIPLL L S   +
Sbjct: 298 ITRAKAFYPALAVILLGGALLALLGGSPVQLLV-LSQVLLSLLLPFALIPLLLLTSSRKL 356

Query: 250 MGTFKIGP 257
           MG F    
Sbjct: 357 MGEFVNSR 364

The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations. Length = 364

>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters

 Score =  195 bits (497), Expect = 2e-59
 Identities = 97/252 (38%), Positives = 135/252 (53%), Gaps = 23/252 (9%)

Query: 17  VLIATMALSFAWMFGETKPSGSELLIGILVPK---LSSKTIQQAVGVVGCIIMPHNVFLH 73
           +L+  +A+ FA+     KP   ++L G  VP      +  + QAVG++G  +MPH+++LH
Sbjct: 144 LLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLH 203

Query: 74  SALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYG-------- 125
           SALVQSR +D + K  V EA  Y  IE+ +AL VSF IN FV  +F    +         
Sbjct: 204 SALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSFSINEFVIALFTAALFVNTNILVVA 263

Query: 126 -------TEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI 178
                     A+   L + G  L   +        YI+ +GLLAAGQSS + GTY+GQF+
Sbjct: 264 GATLFNSNNNADAADLFSIGVLLGCLFSPA---AGYIFAVGLLAAGQSSGMVGTYSGQFV 320

Query: 179 MGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALI 238
           M GFLN R   WLR LITR+ AI+P ++VA         L        V+ S+ +PFALI
Sbjct: 321 MEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREG--LTGALNASQVVLSLLLPFALI 378

Query: 239 PLLYLVSQEHIM 250
           PL+   S + IM
Sbjct: 379 PLIMFTSSKKIM 390

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390

>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed

 Score =  193 bits (493), Expect = 3e-58
 Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 11/272 (4%)

Query: 16  IVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQ----AVGVVGCIIMPHNVF 71
             L+  +A +F       +P  + +L G  +P        +    A G++G  +MPHN++
Sbjct: 173 GGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLY 231

Query: 72  LHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANN 131
           LHS+LVQ+R +    + + +EALR+  I+S +AL ++  +N  +  + A  F+ +   + 
Sbjct: 232 LHSSLVQTRVVGRTGEEK-REALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDV 290

Query: 132 IGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWL 191
             + +A   L     G     L+  GI LLA+G SST+ GT AGQ +M GFL LR+  W+
Sbjct: 291 ADIEDAYLLLSP-LLGAAAATLF--GIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWV 347

Query: 192 RALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMG 251
           R LITR  A+VP +IV L+     D   +L     V+ S  +PFALIPLL   S   +MG
Sbjct: 348 RRLITRGLAMVPALIVILLGGEL-DPTRLL-VLSQVVLSFGLPFALIPLLLFTSDRKLMG 405

Query: 252 TFKIGPILKMVSWLVAVLVILINGYLLLEFFS 283
                  +K+++W++AVL++ +N YLL + F+
Sbjct: 406 ELVNPRWVKIIAWIIAVLIVALNIYLLYQTFT 437

Length = 439

>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

 Score =  143 bits (362), Expect = 2e-39
 Identities = 88/272 (32%), Positives = 144/272 (52%), Gaps = 10/272 (3%)

Query: 14  LSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSK-TIQQAVGVVGCIIMPHNVFL 72
           + ++L   + + F ++     P   E+  G  +P       +   + ++G  +MPH ++L
Sbjct: 152 VVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYL 211

Query: 73  HSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNI 132
           HS+LVQ   I   K      ALRY  I++ + ++++ ++NL +  V A GF+ +    ++
Sbjct: 212 HSSLVQDAGI---KGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDV 268

Query: 133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLR 192
                   L     G    +L+  G+ LLAAG SST+  TYAGQ +M GFLN R+  W R
Sbjct: 269 ADAYDAYLLLAPLLGSAAFVLF--GVALLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRR 326

Query: 193 ALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGT 252
            LITR+ AIVP + + ++F     +L     +  VL SV +PFALIPLL L S + +MG 
Sbjct: 327 RLITRTFAIVPGLAIIILFGDPARLL----VFSQVLLSVILPFALIPLLLLTSDKKLMGD 382

Query: 253 FKIGPILKMVSWLVAVLVILINGYLLLEFFSS 284
           +K    L ++ W+V +L++ +N  LL+     
Sbjct: 383 YKNPRWLTVLGWIVVILIVALNIILLVGTLGG 414

Length = 416

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
PRK00701	439	manganese transport protein MntH; Reviewed	100.0
KOG1291	503	consensus Mn2+ and Fe2+ transporters of the NRAMP	100.0
TIGR01197	390	nramp NRAMP (natural resistance-associated macroph	100.0
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	100.0
PF01566	358	Nramp: Natural resistance-associated macrophage pr	100.0
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	96.89
COG0733	439	Na+-dependent transporters of the SNF family [Gene	96.69
PRK15132	403	tyrosine transporter TyrP; Provisional	96.57
PRK10483	414	tryptophan permease; Provisional	95.89
PRK09664	415	tryptophan permease TnaB; Provisional	95.41
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	95.08
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	94.61
PRK11375	484	allantoin permease; Provisional	94.12
TIGR00814	397	stp serine transporter. The HAAAP family includes	93.57
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	93.26
PRK10484	523	putative transporter; Provisional	92.29
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	92.25
PRK15433	439	branched-chain amino acid transport system 2 carri	91.4
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	90.48
TIGR00813	407	sss transporter, SSS family. have different number	90.2
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	89.09
PRK13629	443	threonine/serine transporter TdcC; Provisional	89.02
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	88.09
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	87.83
COG1457	442	CodB Purine-cytosine permease and related proteins	87.37
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	87.31
TIGR00907	482	2A0304 amino acid permease (GABA permease).	87.06
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	84.96
PRK15419	502	proline:sodium symporter PutP; Provisional	84.89
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	82.96
PRK11387	471	S-methylmethionine transporter; Provisional	82.23

>PRK00701 manganese transport protein MntH; Reviewed

Probab=100.00  E-value=3.7e-55  Score=433.66  Aligned_cols=274  Identities=34%  Similarity=0.555  Sum_probs=250.3

Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccC---CCh-hHHHHHHHhhhhhhhhhHHHHhhhhhh
Q 020153            3 FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPK---LSS-KTIQQAVGVVGCIIMPHNVFLHSALVQ   78 (330)
Q Consensus         3 ~~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~---~~~-~~l~~~vaiiGaTI~P~~lfl~S~lv~   78 (330)
                      +++++||++||++..++++|.+||+.+++.++|||+|+++| ++|+   +|+ ++++.++|++|||+||||+|+||+++|
T Consensus       160 l~~~~y~~~E~i~~~lv~~m~l~f~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~  238 (439)
T PRK00701        160 LQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQ  238 (439)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999 8999   874 678999999999999999999999998


Q ss_pred             hcccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcCCChhHHHHHHHH
Q 020153           79 SRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGI  158 (330)
Q Consensus        79 ~r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G~~~~~a~~lFai  158 (330)
                      ||+++ ++++..++++|++|+|+.+|+.+++++|.++++++|+++|+++..+..+.+|++++|||.+|+   +++++|++
T Consensus       239 ~k~~~-~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G~---~a~~lFai  314 (439)
T PRK00701        239 TRVVG-RTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGA---AAATLFGI  314 (439)
T ss_pred             hcccc-CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHhH---HHHHHHHH
Confidence            88544 334556788999999999999999999999999999999988764578899999999999999   99999999


Q ss_pred             HHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHH
Q 020153          159 GLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALI  238 (330)
Q Consensus       159 GL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li  238 (330)
                      |+++||++|++++++++++++|+++||+.+++.||..++.+.++|++++. +.+. +.++.++++++|++|+++||++++
T Consensus       315 GL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~-~~~~-~~~p~~lli~aqv~~~i~LP~~~~  392 (439)
T PRK00701        315 ALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVI-LLGG-ELDPTRLLVLSQVVLSFGLPFALI  392 (439)
T ss_pred             HHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654 4451 123458899999999999999999


Q ss_pred             HHHHHHcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020153          239 PLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFS  283 (330)
Q Consensus       239 ~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~  283 (330)
                      |+++++||||+||+|||++++|+++|+++++++.+|++++++.++
T Consensus       393 ~ll~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~  437 (439)
T PRK00701        393 PLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFT  437 (439)
T ss_pred             HHHHHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999998764

>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.7e-57  Score=435.13  Aligned_cols=309  Identities=54%  Similarity=0.830  Sum_probs=288.2

Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCC---hhHHHHHHHhhhhhhhhhHHHHhhhhhhh
Q 020153            3 FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQS   79 (330)
Q Consensus         3 ~~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiGaTI~P~~lfl~S~lv~~   79 (330)
                      ++|+|.|++|.+..+++..|.+||.+++..++|+.+|++.|.++|+++   ++.++.++|++|+||||||+|+||++||+
T Consensus       155 l~kyGiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~s  234 (503)
T KOG1291|consen  155 LDKYGIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQS  234 (503)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcc
Confidence            578999999999999999999999999999999999999999999987   78999999999999999999999999999


Q ss_pred             cccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCCCCcc-------------ccCchhHHHHHHHhc
Q 020153           80 RDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVF-AKGFYGTEQAN-------------NIGLVNAGQYLQEKY  145 (330)
Q Consensus        80 r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~-A~~l~~~~~~~-------------~~~~~~aa~~L~p~~  145 (330)
                      |+.|++.+...+|+.+|..+|..+++.+++.+|..++.+. |+.++++.+.+             +.|+.+++..|+..+
T Consensus       235 R~~d~~~~~~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~  314 (503)
T KOG1291|consen  235 RLIDRDVKKGVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYF  314 (503)
T ss_pred             cccCHhhhhhhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHh
Confidence            9999987777889999999999999999999999999888 88888765432             335778899999999


Q ss_pred             CCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 020153          146 GGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWL  225 (330)
Q Consensus       146 G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~  225 (330)
                      |+   ++.++|++|+++|||||++++|++||++||||+||++++|.||+.||+++++|++++++..|.+  ++.+++.++
T Consensus       315 g~---~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~  389 (503)
T KOG1291|consen  315 GP---AALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFL  389 (503)
T ss_pred             cc---HHHHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHH
Confidence            99   9999999999999999999999999999999999999999999999999999999988777755  578999999


Q ss_pred             HHHHHhHhHHHHHHHHHHHcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHH
Q 020153          226 NVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVN-GVLIATVIGVFTAGYVA  304 (330)
Q Consensus       226 qvi~~l~LP~~li~Ll~l~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~y~~  304 (330)
                      |++++++|||+++|++.++++|++||+|+|+...+...|.+..++...|.|++++++..+.+ ++.+...+....+.|++
T Consensus       390 nvl~S~~LPFa~iPLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~~~~~~~~~~~~~~~~~~~y~~  469 (503)
T KOG1291|consen  390 NVLQSLQLPFAVIPLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWSLVGKHSKIVVTVNVWTLAYLA  469 (503)
T ss_pred             HHHHHHhhhHHHhhHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeeeehhhhcCCceeeehhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888877 46788999999999999


Q ss_pred             HHHHHHHhcccc
Q 020153          305 FIIYLVSRGITF  316 (330)
Q Consensus       305 ~~~~~~~~~~~~  316 (330)
                      +.+|++.+++..
T Consensus       470 ~i~yL~~~~l~~  481 (503)
T KOG1291|consen  470 FILYLAATCLNA  481 (503)
T ss_pred             HHHHHHHHHHHH
Confidence            999999986443

>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters

Probab=100.00  E-value=4.2e-50  Score=391.48  Aligned_cols=243  Identities=37%  Similarity=0.581  Sum_probs=217.6

Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCC---hhHHHHHHHhhhhhhhhhHHHHhhhhhhh
Q 020153            3 FCPFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQS   79 (330)
Q Consensus         3 ~~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiGaTI~P~~lfl~S~lv~~   79 (330)
                      +++++||++||++..++++|.+||+++++.+||||+|+++|+++|+.|   +++++.++|++||||||||+|+||+++||
T Consensus       130 ~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~  209 (390)
T TIGR01197       130 LDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQS  209 (390)
T ss_pred             HHhCCceeHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhc
Confidence            468999999999999999999999999999999999999998899875   57889999999999999999999999999


Q ss_pred             cccCCCchhhhH-------------HHHhHHHHHHHHHHHHHHH-HHHHHHHHhhhhccCCCC-ccccCchhHHHHHHHh
Q 020153           80 RDIDNNKKGRVQ-------------EALRYYSIESTLALVVSFM-INLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEK  144 (330)
Q Consensus        80 r~~~~~~~~~~~-------------~~l~~~r~D~~~g~~v~~i-i~~aili~~A~~l~~~~~-~~~~~~~~aa~~L~p~  144 (330)
                      |+++++++++++             ...++.|.|+.+++....+ +|.++++++|+++|+++. .+..|++|++++|||.
T Consensus       210 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~  289 (390)
T TIGR01197       210 RLVDRDVKEGVSEANMYRPIEAAIALSVSFSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCL  289 (390)
T ss_pred             cccCcccchhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHH
Confidence            998876643322             3457889999999988665 799999999999987533 4678899999999999


Q ss_pred             cCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 020153          145 YGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEW  224 (330)
Q Consensus       145 ~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~  224 (330)
                      +|+   +++++|++||++||+||++++++++|++++||+||+.++|+|+..+|.+.++|++++..+.|..  ++.+++++
T Consensus       290 ~G~---~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~--~p~~liv~  364 (390)
T TIGR01197       290 FSP---AAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGRE--GLTGALNA  364 (390)
T ss_pred             hhH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHH
Confidence            999   9999999999999999999999999999999999999999999999998889988765544322  35689999


Q ss_pred             HHHHHHhHhHHHHHHHHHHHcCCccc
Q 020153          225 LNVLQSVQIPFALIPLLYLVSQEHIM  250 (330)
Q Consensus       225 ~qvi~~l~LP~~li~Ll~l~n~r~iM  250 (330)
                      +|++|+++||++++|+++++||||+|
T Consensus       365 aQv~~~l~LP~~~i~Ll~~~~~k~lM  390 (390)
T TIGR01197       365 SQVVLSLLLPFALIPLIMFTSSKKIM  390 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999999999999998

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.3e-47  Score=371.59  Aligned_cols=269  Identities=34%  Similarity=0.573  Sum_probs=248.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCCh-hHHHHHHHhhhhhhhhhHHHHhhhhhhhcccCC
Q 020153            6 FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDN   84 (330)
Q Consensus         6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~-~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~~   84 (330)
                      ++||++||+...++..+.+||.++++.++|+|+++.++.++|+.|. +.++.++|++|+|||||++|+||+.+|++..  
T Consensus       144 ~~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~--  221 (416)
T COG1914         144 KGYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI--  221 (416)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc--
Confidence            3899999999999999999999999999999999999999999876 8999999999999999999999999998332  


Q ss_pred             CchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-ccccCchhHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 020153           85 NKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAA  163 (330)
Q Consensus        85 ~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~-~~~~~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aA  163 (330)
                       +++..++++|++++|+.+++..+.++|.++++++|..+|.++. .+..+++++++.++|.+|+   .+..+|+++++++
T Consensus       222 -~~~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~---~~~~lF~v~llas  297 (416)
T COG1914         222 -KGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGS---AAFVLFGVALLAA  297 (416)
T ss_pred             -cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhh---HHHHHHHHHHHHh
Confidence             2334578899999999999999999999999999999998775 4577899999999999998   8999999999999


Q ss_pred             hhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHHHHHHH
Q 020153          164 GQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYL  243 (330)
Q Consensus       164 g~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~l  243 (330)
                      |++|+++++++++++++|+++|+.++|.||..+|.+.++|+.++....| +|   .++++++|+++++++|++++|++++
T Consensus       298 g~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g-~~---~~lL~~sqvl~~~~lP~~~~~ll~~  373 (416)
T COG1914         298 GLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG-DP---ARLLVFSQVLLSVILPFALIPLLLL  373 (416)
T ss_pred             HHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc-cH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999776666676 44   4899999999999999999999999


Q ss_pred             HcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020153          244 VSQEHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSS  284 (330)
Q Consensus       244 ~n~r~iMG~~~n~~~~~i~~~~~~~~i~~l~~~~i~~~~~~  284 (330)
                      ++|||+||+|+|++|.++++|.+++.+..+|++++.+++.+
T Consensus       374 ~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L~i~li~~~~~~  414 (416)
T COG1914         374 TSDKKLMGDYKNPRWLTVLGWIVVILIVALNIILLVGTLGG  414 (416)
T ss_pred             HcChhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999988754

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=100.00  E-value=8.8e-48  Score=372.73  Aligned_cols=247  Identities=34%  Similarity=0.518  Sum_probs=223.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHhhhccccccCCCh-hHHHHHHHhhhhhhhhhHHHHhhhhhhhcccC
Q 020153            5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSELLIGILVPKLSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDID   83 (330)
Q Consensus         5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~v~~g~~~P~~~~-~~l~~~vaiiGaTI~P~~lfl~S~lv~~r~~~   83 (330)
                      +++||++||+++.++.+|.+||+++++.++|||+++.+|++.|++|+ +++..++|++|||++|||+|+||+.++||+++
T Consensus       110 ~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~  189 (358)
T PF01566_consen  110 SGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWT  189 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccC
Confidence            89999999999999999999999999999999999999976699998 99999999999999999999999999999988


Q ss_pred             CCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcC-CChhHHHHHHHHHHHH
Q 020153           84 NNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG-GGLFPILYIWGIGLLA  162 (330)
Q Consensus        84 ~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G-~~~~~a~~lFaiGL~a  162 (330)
                      ++++++ ++++|++|+|+.+|+++++++|.++++++|+++|+.+. +.++.+|++++|+|.+| +   +++++|++|+++
T Consensus       190 ~~~~~~-~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~-~~~~~~~~~~~L~~~~G~~---~a~~lF~igl~~  264 (358)
T PF01566_consen  190 GNRSRP-DEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGS-EVETAAQAAQALEPLLGSP---WARYLFAIGLFA  264 (358)
T ss_pred             CCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhHHHHHHHHHHhcCch---HHHHhHHHHHHH
Confidence            644211 26799999999999999999999999999999994433 57899999999999999 8   999999999999


Q ss_pred             hhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHHHHHH
Q 020153          163 AGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLY  242 (330)
Q Consensus       163 Ag~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~  242 (330)
                      |+++|+++.++++++.++|++||+.++++|+..++.....|++++....+.+ ..+.++++++|++|++.+|++++++++
T Consensus       265 a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~v~~~~~lP~~~~~l~~  343 (358)
T PF01566_consen  265 AGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGAP-GAPVQLLIFAQVLNSLLLPFVAIPLLL  343 (358)
T ss_pred             HHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888888777777778877665555443 335789999999999999999999999


Q ss_pred             HHcCCcccCCCCchH
Q 020153          243 LVSQEHIMGTFKIGP  257 (330)
Q Consensus       243 l~n~r~iMG~~~n~~  257 (330)
                      ++|||++||||||+|
T Consensus       344 l~n~~~~mG~~~n~~  358 (358)
T PF01566_consen  344 LANDKKLMGEYRNSW  358 (358)
T ss_pred             HHcChhhhhCcccCC
Confidence            999999999999986

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.89  E-value=0.53  Score=46.55  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Q 020153            6 FGLVLLLLLSIVLIATMALSFAWMFGETKPSGS   38 (330)
Q Consensus         6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~   38 (330)
                      .|.|.++|+...++..|.++|.......-|+|.
T Consensus       137 ~g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~  169 (394)
T PF03222_consen  137 FGTKAVDRINRVLVFGMIISFIILVVYLIPHWN  169 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            466789999999999999999888877767663

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=96.69  E-value=0.64  Score=46.44  Aligned_cols=162  Identities=17%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             CcchHH-HHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhhccccccCCCh----hHHHHH-------HHhhhhhhhhhHH
Q 020153            5 PFGLVL-LLLLSIVLIATMALSFAWMFGET--KPSGSELLIGILVPKLSS----KTIQQA-------VGVVGCIIMPHNV   70 (330)
Q Consensus         5 ~~~yr~-~E~~~~~lv~~m~l~fi~~~~~~--~P~~~~v~~g~~~P~~~~----~~l~~~-------vaiiGaTI~P~~l   70 (330)
                      ++|-++ +||..++++=++.++|++.++.+  .|.-.|=.+-.+.|+.++    +.+..+       +++=.++..-|. 
T Consensus       160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYs-  238 (439)
T COG0733         160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYS-  238 (439)
T ss_pred             HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            345555 99999988888888888877654  666555555556676421    222222       222222222333 


Q ss_pred             HHhhhhhhhcccCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHH--HhcCCC
Q 020153           71 FLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQ--EKYGGG  148 (330)
Q Consensus        71 fl~S~lv~~r~~~~~~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~--p~~G~~  148 (330)
                         |++  +|+.|     ..+......-.|+.++.+.+..|--++-..+..  .+.|  ...-.....+.+.  | +|+ 
T Consensus       239 ---SYL--~k~~~-----l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--~~~G--pgL~Fi~LP~if~~mp-~G~-  302 (439)
T COG0733         239 ---SYL--SKKSD-----LVSSALSIVLLNTLISLLAGLVIFPALFSFGAD--ASQG--PGLVFIVLPAVFNQMP-LGT-  302 (439)
T ss_pred             ---hhc--Ccccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCC--CeeehhHHHHHHHhCc-hhH-
Confidence               333  22222     335566667777777776664433332222221  1111  1111222233332  2 777 


Q ss_pred             hhHHHHHHHHHHHHhhhhhHhhhhhH-HHHHHhhhcCcc
Q 020153          149 LFPILYIWGIGLLAAGQSSTITGTYA-GQFIMGGFLNLR  186 (330)
Q Consensus       149 ~~~a~~lFaiGL~aAg~sS~i~~~~a-~~~v~~g~l~~~  186 (330)
                        .-..+|-+.++.|+++|++..--. .++..+++ +++
T Consensus       303 --~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~-~~~  338 (439)
T COG0733         303 --LFGILFFLLLLFAALTSAISMLEVLVAALIDKF-GIS  338 (439)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence              667889999999999998754222 23344553 543

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=96.57  E-value=0.7  Score=45.91  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=28.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHh
Q 020153            6 FGLVLLLLLSIVLIATMALSFAWMFGETKPSGSE   39 (330)
Q Consensus         6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~   39 (330)
                      .|-|.++|+..+++..|.++|+......-|+|..
T Consensus       137 ~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~  170 (403)
T PRK15132        137 VGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHK  170 (403)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            3668999999999999999998887777787753

>PRK10483 tryptophan permease; Provisional

Probab=95.89  E-value=2.2  Score=42.64  Aligned_cols=35  Identities=11%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhh
Q 020153            7 GLVLLLLLSIVLIATMALSFAWMFGET--KPSGSELL   41 (330)
Q Consensus         7 ~yr~~E~~~~~lv~~m~l~fi~~~~~~--~P~~~~v~   41 (330)
                      |-|.+||+..+++..|.+.|+......  |-|...+.
T Consensus       145 gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~  181 (414)
T PRK10483        145 STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLF  181 (414)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHh
Confidence            568899999999999998888775553  44544443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=95.41  E-value=3.3  Score=41.40  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=25.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHhhh
Q 020153            7 GLVLLLLLSIVLIATMALSFAWMFGET--KPSGSELL   41 (330)
Q Consensus         7 ~yr~~E~~~~~lv~~m~l~fi~~~~~~--~P~~~~v~   41 (330)
                      |-|.+||+...+...|.++|+......  |-|+..+.
T Consensus       144 gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~  180 (415)
T PRK09664        144 SSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILR  180 (415)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHh
Confidence            458888888888899999888765554  45555543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=95.08  E-value=3.6  Score=39.96  Aligned_cols=75  Identities=17%  Similarity=0.005  Sum_probs=40.0

Q ss_pred             CchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHh
Q 020153          133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALV  210 (330)
Q Consensus       133 ~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~  210 (330)
                      +.++..++++...|+.  +...+..++-..|-.+|.....++..-...+.++++.+++. |.....+..+|.++++.+
T Consensus       251 ~~~~l~~~~~~~~~~~--~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~  325 (381)
T TIGR00837       251 NLDGLVNALQGVLKSS--AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKG-RFKTGLLTFLPPLVFALF  325 (381)
T ss_pred             ChHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CchhhhhhHHhHHHHHHH
Confidence            3345566777777763  45566666666666666665555543335555555332222 333334444555555544

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=94.61  E-value=2.9  Score=41.25  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             CchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcC
Q 020153          133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFD  212 (330)
Q Consensus       133 ~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g  212 (330)
                      ..+-+++.-+..+|+   ++..+.++...-|.+++++....+.+-..++...    +..|+.......+... ++. ..|
T Consensus       253 ~~~~l~~~a~~~~G~---~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~----k~~y~~~v~~~~l~s~-~ia-~~G  323 (378)
T TIGR00796       253 GAQILSAYSQHLFGS---LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP----KLSYKTWVIVFTLFSF-IVA-NLG  323 (378)
T ss_pred             cHHHHHHHHHHHcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHH-HHH-HhC
Confidence            344556777899999   8999999999999999988766664333333222    2334443333333332 222 223


Q ss_pred             CCcchhHHHHHHHHHHHHhHhHHHHHHHHH
Q 020153          213 TSEDMLDVLNEWLNVLQSVQIPFALIPLLY  242 (330)
Q Consensus       213 ~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~  242 (330)
                           +.+++.++-=+..+.-|.+.+-.+.
T Consensus       324 -----l~~Ii~~~~PvL~~~YP~~i~lill  348 (378)
T TIGR00796       324 -----LTQIISISIPVLMIIYPLAIVLILL  348 (378)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 4477777777778888888876665

transmembrane helical spanners.

>PRK11375 allantoin permease; Provisional

Probab=94.12  E-value=7.6  Score=39.51  Aligned_cols=92  Identities=10%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhhhhhHh-hhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 020153          151 PILYIWGIGLLAAGQSSTI-TGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQ  229 (330)
Q Consensus       151 ~a~~lFaiGL~aAg~sS~i-~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~  229 (330)
                      .+..+..+.++.+..+.-. .+.++++.-+...+.++.+++ |..+  ...++..++..... .+  .......+...+.
T Consensus       308 ~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~-~~~~--i~~iig~~~~pw~~-~~--~~~~f~~FL~~lg  381 (484)
T PRK11375        308 FASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTKLTYK-NGVL--IASIISLLICPWKL-ME--NQDSIYLFLDIIG  381 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCccchh-hHHH--HHHHHHHHhccHHH-hc--cHHHHHHHHHHHH
Confidence            3444455666666666634 577777777777765443322 2222  12222222111100 01  0113455666677


Q ss_pred             HhHhHHHHHHHH--HHHcCCc
Q 020153          230 SVQIPFALIPLL--YLVSQEH  248 (330)
Q Consensus       230 ~l~LP~~li~Ll--~l~n~r~  248 (330)
                      .++-|...+.+.  ++.+|++
T Consensus       382 ~~l~Pi~gImi~DY~i~rr~~  402 (484)
T PRK11375        382 GMLGPVIGVMMAHYFVVMRGQ  402 (484)
T ss_pred             HHHHHHHHHHHhhheeEeccE
Confidence            777777766662  3335543

>TIGR00814 stp serine transporter

Probab=93.57  E-value=2.8  Score=41.54  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=26.5

Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Q 020153            4 CPFGLVLLLLLSIVLIATMALSFAWMFGETKPSG   37 (330)
Q Consensus         4 ~~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~   37 (330)
                      ...|-|.+.|+...++..+.+.++...+..-|+|
T Consensus       137 v~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~  170 (397)
T TIGR00814       137 MSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW  170 (397)
T ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4567899999999888888887777777666665

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00835 agcS amino acid carrier protein

Probab=93.26  E-value=8.8  Score=38.49  Aligned_cols=216  Identities=16%  Similarity=0.072  Sum_probs=106.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCHHhhhccccccCCChhHHHHHHHhhhhhhhhhHHHHh-hh
Q 020153            5 PFGLVLLLLLSIVLIATMALSFAWMFGET--------KPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLH-SA   75 (330)
Q Consensus         5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~--------~P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lfl~-S~   75 (330)
                      .+|.|++-|+...++-+|.+.|+...+..        .|-+.+++++-|-|+-      ..=|.+|++++--..+-- .+
T Consensus       182 ~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a------~~GG~~G~~v~~ai~~Gv~Rg  255 (425)
T TIGR00835       182 FGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDA------AAGGFAGSTVAQAIMIGVKRG  255 (425)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchh------hHhHHHHHHHHHHHHHhhHHH
Confidence            47899999999999999999885443322        2334444555444331      223456655532211110 00


Q ss_pred             h-hhhcccCCC--------chhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcC
Q 020153           76 L-VQSRDIDNN--------KKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG  146 (330)
Q Consensus        76 l-v~~r~~~~~--------~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G  146 (330)
                      + ..|.+.+..        .++..||.+ .+-++..+-.++-..++..+++++. ..++.+  +.+..+=..++++..+|
T Consensus       256 ~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vfiDTivvCt~Talvil~tg-~~~~~~--~~~g~~lt~~af~~~~g  331 (425)
T TIGR00835       256 LFSNEAGMGSAPIAAAAAQVSHPVRQGL-VQMLGVFIDTMIVCTATALVILLSG-VWNNGE--GLSGAQLTQQALSYGLG  331 (425)
T ss_pred             HhccccccCcHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC-ccCCCC--CCcHHHHHHHHHHHHhh
Confidence            0 011111100        001112211 2233333322222223333333332 222010  11122223467888888


Q ss_pred             CChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 020153          147 GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLN  226 (330)
Q Consensus       147 ~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~q  226 (330)
                      +   +..++.++.++.-++++.+...+-++...+-.++.|. .+.+|.....+..+.     .+.     ++..+-.++-
T Consensus       332 ~---~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~~-~~~~r~~~~~~~~~g-----~~~-----~~~~vw~~~D  397 (425)
T TIGR00835       332 S---FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNKK-VKLYRLVFLAAVFVG-----AFL-----SLDLVWNLAD  397 (425)
T ss_pred             h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cceeeehhhHHHHHH-----HHh-----hHHHHHHHHH
Confidence            8   7889999999999999999888877665554445432 334444332222222     111     1223444566


Q ss_pred             HHHHhHhHHHHHHHHHHH
Q 020153          227 VLQSVQIPFALIPLLYLV  244 (330)
Q Consensus       227 vi~~l~LP~~li~Ll~l~  244 (330)
                      ..+++..=+=++.++.+.
T Consensus       398 ~~~~lm~i~Nlial~~L~  415 (425)
T TIGR00835       398 LSMGLMAIPNLIAILLLR  415 (425)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666766666666666664

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK10484 putative transporter; Provisional

Probab=92.29  E-value=15  Score=37.64  Aligned_cols=43  Identities=9%  Similarity=-0.039  Sum_probs=28.0

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhc
Q 020153          138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFL  183 (330)
Q Consensus       138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l  183 (330)
                      ....++.+.+   +..-++..|+++|.+|+.-..-.+.+. ..++..
T Consensus       317 p~~~~~~lp~---~l~Gl~~a~ilAA~mST~~s~l~s~st~~t~Diy  360 (523)
T PRK10484        317 PTLVNDVLPV---PLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIY  360 (523)
T ss_pred             HHHHHHHcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455667777   666789999999999885544443333 345554

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=92.25  E-value=7.8  Score=38.74  Aligned_cols=217  Identities=16%  Similarity=0.129  Sum_probs=109.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhc---C-CCHH----hhhccccccCCChhHHHHHHHhhhhhhhhhHHHHhh-h
Q 020153            5 PFGLVLLLLLSIVLIATMALSFAWMFGET---K-PSGS----ELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHS-A   75 (330)
Q Consensus         5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~---~-P~~~----~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lfl~S-~   75 (330)
                      -+|-|++-|+...++=+|.+.|+...+..   | ++.+    ++.++-|-|+-      ..-|.+|++++--+.+--+ +
T Consensus       155 ~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~a------a~GG~~G~~i~~ai~~Gv~Rg  228 (416)
T PF01235_consen  155 FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKA------AFGGFAGSTIMMAIRQGVARG  228 (416)
T ss_pred             HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCcc------chhhHHHHHHHHHHHHhhhhh
Confidence            46889999999999999999988775443   3 2233    34444444432      2235677776422211100 0


Q ss_pred             h-hhhcccCCC--------chhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcC
Q 020153           76 L-VQSRDIDNN--------KKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYG  146 (330)
Q Consensus        76 l-v~~r~~~~~--------~~~~~~~~l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G  146 (330)
                      + ..|.+.+..        .+...+|.+ ..-++..+--++-..++..+++++.. .+..+  +.+..+-..++++..+|
T Consensus       229 ~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~~~~~vFiDTiiVCt~TalvIl~tG~-~~~~~--~~~g~~l~~~Af~~~~g  304 (416)
T PF01235_consen  229 LFSNEAGLGSAPIAHAAAETDHPVRQGL-VQMFEVFIDTIIVCTITALVILVTGV-WSWGS--GLEGAALTQAAFSTVLG  304 (416)
T ss_pred             hccCCCCCChhHHHHHHhcCCCcHHHee-eeeehHhHHHHHHHHHHHHHhhccCC-CCCCC--cchHHHHHHHHHHHhhh
Confidence            0 011111110        000111111 11223333222222223333333322 11111  22333445778999999


Q ss_pred             CChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 020153          147 GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLN  226 (330)
Q Consensus       147 ~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~q  226 (330)
                      +   +..++..+.++.-+++|.+...+-++...+-.++.+...+.+|.+......     +..+..     +..+-.++-
T Consensus       305 ~---~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~i~~~~-----~G~~~~-----~~~vW~~~D  371 (416)
T PF01235_consen  305 S---WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILFIAMVF-----IGAVID-----LDLVWDLAD  371 (416)
T ss_pred             h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehhhhhhh-----hhhccc-----chhHHHHHH
Confidence            8   889999999999999999988888766655555333233345544322111     112221     123344556


Q ss_pred             HHHHhHhHHHHHHHHHHH
Q 020153          227 VLQSVQIPFALIPLLYLV  244 (330)
Q Consensus       227 vi~~l~LP~~li~Ll~l~  244 (330)
                      ..+++..=+=++.++++.
T Consensus       372 i~~~lmai~Nlial~lL~  389 (416)
T PF01235_consen  372 IANGLMAIPNLIALLLLS  389 (416)
T ss_pred             HHHHHHHHHHHHHHHHhH
Confidence            666666666666666664

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=91.40  E-value=17  Score=36.56  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 020153          137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSED  216 (330)
Q Consensus       137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~  216 (330)
                      .....+..+|+   +...++++.++.|.+++++....+.+--.++..+     ..||.....+.++.. .++. .|    
T Consensus       267 l~~~~~~~~G~---~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----isY~~~v~i~~l~S~-~lSn-~G----  332 (439)
T PRK15433        267 LHAYVQHTFGG---GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----LSYRTLVFILGGFSM-VVSN-LG----  332 (439)
T ss_pred             HHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHH-HHHH-hH----
Confidence            35567889999   8999999999999999999887775444444332     334443333333332 2222 23    


Q ss_pred             hhHHHHHHHHHHHHhHhHHHHHHHHHHHcCCc
Q 020153          217 MLDVLNEWLNVLQSVQIPFALIPLLYLVSQEH  248 (330)
Q Consensus       217 ~l~~l~~~~qvi~~l~LP~~li~Ll~l~n~r~  248 (330)
                       +.+++.++-=+..++=|.+.+-.+.-.-||.
T Consensus       333 -~~~II~~s~PiL~~iYP~~IvLill~l~~~~  363 (439)
T PRK15433        333 -LSQLIQISVPVLTAIYPPCIALVVLSFTRSW  363 (439)
T ss_pred             -HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             3366677777777888887755443323443

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=90.48  E-value=20  Score=35.75  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 020153          137 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSED  216 (330)
Q Consensus       137 aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~  216 (330)
                      .++.=+..+|+   +...++++-..-|++++++...-+    +.||++...++..|+....+..+... .++- .|    
T Consensus       265 L~~~s~~~fG~---~G~~lL~~iv~lACLTTaiGLi~a----~aefF~~~~p~~SY~~~v~if~i~sf-lvan-~G----  331 (431)
T COG1114         265 LSAYSQHLFGS---YGSILLGLIVFLACLTTAVGLIVA----CAEFFSKLVPKLSYKTWVIIFTLISF-LVAN-LG----  331 (431)
T ss_pred             HHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccccHHHHHHHHHHHHH-HHHH-hh----
Confidence            35555788999   888999999999998887755444    35666655555666665555444332 2322 23    


Q ss_pred             hhHHHHHHHHHHHHhHhHHHHHHH
Q 020153          217 MLDVLNEWLNVLQSVQIPFALIPL  240 (330)
Q Consensus       217 ~l~~l~~~~qvi~~l~LP~~li~L  240 (330)
                       +.+++.++-=+..+.=|....-.
T Consensus       332 -L~~Ii~isvPvL~~iYPiaI~Lv  354 (431)
T COG1114         332 -LEQIIKISVPVLTAIYPIAIALV  354 (431)
T ss_pred             -HHHHHHHHHHHHHHHhHHHHHHH
Confidence             44666666666677778776443

>TIGR00813 sss transporter, SSS family

Probab=90.20  E-value=16  Score=35.98  Aligned_cols=42  Identities=14%  Similarity=0.026  Sum_probs=28.5

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhc
Q 020153          139 QYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFL  183 (330)
Q Consensus       139 ~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l  183 (330)
                      ...+..+++   +..-++..|+++|..|+.-..-.+.+. +.++..
T Consensus       285 ~~~~~~lp~---~l~gl~~agilaA~mST~~s~l~a~ss~~~~Di~  327 (407)
T TIGR00813       285 LLVQELMPP---GLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLY  327 (407)
T ss_pred             HHHHHHcCc---chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            344567777   677899999999999996655444433 345553

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=89.09  E-value=28  Score=35.30  Aligned_cols=41  Identities=20%  Similarity=0.033  Sum_probs=27.2

Q ss_pred             HHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH-HHHhhhc
Q 020153          140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ-FIMGGFL  183 (330)
Q Consensus       140 ~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~-~v~~g~l  183 (330)
                      ..+..+.+   +..-++..|+++|.+|+.-+.-.+.+ .+.++..
T Consensus       310 ~~~~~~p~---~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy  351 (487)
T TIGR02121       310 LSQILFHP---WIAGILLAAILAAIMSTISSQLLVSSSALTEDFY  351 (487)
T ss_pred             HHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666   66678999999999998665544433 3455553

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=89.02  E-value=27  Score=35.19  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=30.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHh
Q 020153            5 PFGLVLLLLLSIVLIATMALSFAWMFGETKPSGSE   39 (330)
Q Consensus         5 ~~~yr~~E~~~~~lv~~m~l~fi~~~~~~~P~~~~   39 (330)
                      ..|-|.++|+...++..+.++|+...+..-|+|..
T Consensus       154 ~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~  188 (443)
T PRK13629        154 WFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNS  188 (443)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            34679999999999999999999999999898863

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=88.09  E-value=2.6  Score=41.91  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             HHHhhhhhH-hhhhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHH-hcCCCcchhHHHHHHHHHHHHhHhHHHH
Q 020153          160 LLAAGQSST-ITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVAL-VFDTSEDMLDVLNEWLNVLQSVQIPFAL  237 (330)
Q Consensus       160 L~aAg~sS~-i~~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~-~~g~~p~~l~~l~~~~qvi~~l~LP~~l  237 (330)
                      +..++..+. ..+.+++....+..++++.+.++.......+   ..+.... +.+....   .+..+.+.+..+.-|...
T Consensus       291 i~~~~~~~~~~~n~ys~~~~l~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~~---~f~~fL~~lg~~~~P~~g  364 (440)
T PF02133_consen  291 ILFASIWTNNAANLYSAGLALQNIFPKRISRRRGVIIVGVI---GIAIAPWGLLGNFSF---LFTNFLSLLGYFLGPWAG  364 (440)
T ss_dssp             HHHHHHTTHHHHHTHHHHHHHHCCSTTT--HHHHHHHHHHH---HHCT-GGGTCCCCHC-------HCCCCCHTTHHHHH
T ss_pred             HHHHHHHHhhhhhHhhHHHHHHHccceeecchHHHHHHHHH---HHHHHHHHHHhchhh---hHHHHHHHHHHhchhHHH
Confidence            333344333 3456666666677666444444333333222   2111111 2332211   144556666677778877


Q ss_pred             HHH
Q 020153          238 IPL  240 (330)
Q Consensus       238 i~L  240 (330)
                      +.+
T Consensus       365 I~i  367 (440)
T PF02133_consen  365 IMI  367 (440)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=87.83  E-value=35  Score=34.94  Aligned_cols=24  Identities=21%  Similarity=0.099  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHhhhhhHhhhhhH
Q 020153          151 PILYIWGIGLLAAGQSSTITGTYA  174 (330)
Q Consensus       151 ~a~~lFaiGL~aAg~sS~i~~~~a  174 (330)
                      .-..+|-+.++-+|++|.+...-.
T Consensus       346 ~~~~lFFl~l~~agl~S~i~~~E~  369 (523)
T PF00209_consen  346 FWAILFFLMLFLAGLTSQISMLEV  369 (523)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhhcCCceec
Confidence            344678888888888887755433

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=87.37  E-value=35  Score=34.45  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhc-C-CCHHhhhccccccCCChhHHHHHHHhhhhhhhhhHHH
Q 020153            6 FGLVLLLLLSIVLIATMALSFAWMFGET-K-PSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVF   71 (330)
Q Consensus         6 ~~yr~~E~~~~~lv~~m~l~fi~~~~~~-~-P~~~~v~~g~~~P~~~~~~l~~~vaiiGaTI~P~~lf   71 (330)
                      .|||.+|++-+..+-.+.+.|.+..... + -++.+.... -.|+-+. .+..++++.=+-.+.|.-|
T Consensus       147 fG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~-~~~~~~~-~fl~a~slv~g~~~sw~~~  212 (442)
T COG1457         147 FGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV-KGPTSPL-SFLSALSLVIGSFASWGPY  212 (442)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec-cCCCcch-hHHHHHHHHHHHHHhhhhh
Confidence            5788888877777777777777665443 3 333333333 1344333 3444444433334444433

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=87.31  E-value=29  Score=33.94  Aligned_cols=44  Identities=14%  Similarity=-0.045  Sum_probs=29.3

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhcC
Q 020153          138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFLN  184 (330)
Q Consensus       138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l~  184 (330)
                      ...++..+++   +..-++..++++|.+|+.-+...+.+. +.++..+
T Consensus       282 ~~~~~~~~p~---~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~Di~~  326 (406)
T PF00474_consen  282 PYLAAQYLPP---GLAGLFLAGILAAIMSTADSLLLAISSIFSRDIYK  326 (406)
T ss_dssp             HHHHT-TS-T---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhccc---hhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHHhhh
Confidence            4445667777   677788899999999887666555443 4677643

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=87.06  E-value=35  Score=34.21  Aligned_cols=37  Identities=16%  Similarity=-0.003  Sum_probs=20.2

Q ss_pred             hHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhH
Q 020153          136 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYA  174 (330)
Q Consensus       136 ~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a  174 (330)
                      ..++.++..+|..  +...++.+....+.+++.....++
T Consensus       290 p~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~  326 (482)
T TIGR00907       290 PIAQIFYNALGNK--AGAIFLLCLILVTSFFCAITCMTA  326 (482)
T ss_pred             hHHHHHHHHhCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777773  333455555555555655544333

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=84.96  E-value=45  Score=33.49  Aligned_cols=134  Identities=16%  Similarity=0.060  Sum_probs=75.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccccCchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhh
Q 020153           94 LRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTY  173 (330)
Q Consensus        94 l~~~r~D~~~g~~v~~ii~~aili~~A~~l~~~~~~~~~~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~  173 (330)
                      .|....-..++...-.++-....-++|..-..-++ +.+..+-..+.-+..+|+   .+..++++...-|.+++++..+-
T Consensus       221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~-~~~g~~lL~~i~~~~~G~---~G~~ll~iiv~lACLTTaIGL~~  296 (427)
T PF05525_consen  221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPD-DINGAELLSQIANHLFGS---AGQILLGIIVFLACLTTAIGLIS  296 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccC-CCCHHHHHHHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444445443211011 122233335566788999   88899999999999999998777


Q ss_pred             HHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhHhHHHHHHHHH
Q 020153          174 AGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLY  242 (330)
Q Consensus       174 a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~~p~~l~~l~~~~qvi~~l~LP~~li~Ll~  242 (330)
                      +.+-..++..+    |..||.......++..+ ++. .|     +.+++.++.=+..++=|.+.+-.+.
T Consensus       297 a~a~yf~~~~~----kisY~~~v~i~~i~S~~-ian-~G-----l~~Ii~~s~PiL~~iYP~~IvLIll  354 (427)
T PF05525_consen  297 ACAEYFSELFP----KISYKVWVIIFTIFSFI-IAN-LG-----LDQIIKISVPILMFIYPVAIVLILL  354 (427)
T ss_pred             HHHHHHHHHhc----ccChHHHHHHHHHHHHH-HHH-hC-----HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            65544444444    33344444444444432 322 23     4477778877778888888765443

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=84.89  E-value=48  Score=33.72  Aligned_cols=41  Identities=20%  Similarity=-0.015  Sum_probs=25.8

Q ss_pred             HHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH-HHHhhhc
Q 020153          140 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ-FIMGGFL  183 (330)
Q Consensus       140 ~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~-~v~~g~l  183 (330)
                      ..+..+.+   +..-++..|+++|.+|+.-..-.+.+ .+.+++.
T Consensus       317 l~~~~lp~---~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy  358 (502)
T PRK15419        317 LAQILFNP---WIAGILLSAILAAVMSTLSCQLLVCSSAITEDLY  358 (502)
T ss_pred             HHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566   66678999999999988654433333 2345553

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=82.96  E-value=49  Score=32.31  Aligned_cols=36  Identities=11%  Similarity=-0.032  Sum_probs=24.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHH
Q 020153          138 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ  176 (330)
Q Consensus       138 a~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~  176 (330)
                      ....+...|+   +...++.++...+.+.+..+...++.
T Consensus       261 ~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~s  296 (426)
T PF13520_consen  261 AVLASAVGGS---WLAIIVSIAAILSLFGSINAFIFGAS  296 (426)
T ss_dssp             HHHHHHHHCC---THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccccc---ccccccccccccccccccchhhcchh
Confidence            3444555567   77788888888888887776655543

...

>PRK11387 S-methylmethionine transporter; Provisional

Probab=82.23  E-value=58  Score=32.65  Aligned_cols=38  Identities=18%  Similarity=0.028  Sum_probs=25.2

Q ss_pred             hhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153          135 VNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG  175 (330)
Q Consensus       135 ~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~  175 (330)
                      ++..++++...|+   ++..+..++.+.+.+++.....+++
T Consensus       275 ~p~~~~~~~~g~~---~~~~ii~~~~~~s~~~~~~~~~~~~  312 (471)
T PRK11387        275 SPFVLVFEKVGIP---YAADIFNFVILTAILSAANSGLYAS  312 (471)
T ss_pred             ChHHHHHHHcCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556667776666   6777777777777777766555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	95.78
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	95.65
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	93.44
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	88.98
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	83.4

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=95.78  E-value=1.4  Score=41.88  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=27.0

Q ss_pred             hHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153          136 NAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG  175 (330)
Q Consensus       136 ~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~  175 (330)
                      ..++..++..|+   +...+..++.+.+.+++..+..+++
T Consensus       259 ~~~~~~~~~~g~---~~~~~i~~~~~~~~~~~~~~~~~~~  295 (444)
T 3gia_A          259 ALAVAAKPFLGN---LGFLLISIGALFSISSAMNATIYGG  295 (444)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888887   7777888888888887776655543

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=95.65  E-value=1.9  Score=42.47  Aligned_cols=99  Identities=21%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             HHHHHHhc-CCChhHH-HHHHH-HHHHHhhhhhHhh-hhhHHHHHHhhhcCccchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 020153          138 GQYLQEKY-GGGLFPI-LYIWG-IGLLAAGQSSTIT-GTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT  213 (330)
Q Consensus       138 a~~L~p~~-G~~~~~a-~~lFa-iGL~aAg~sS~i~-~~~a~~~v~~g~l~~~~~~~~~~~~~~~i~i~paliv~~~~g~  213 (330)
                      .+.+...+ ++   .. ..+.. +.++.+-++..+. +.++++.-++....+..+.  |+. +..+.++.. +++ ..+ 
T Consensus       284 ~~~l~~~l~~~---~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~--~~~-~~i~~vi~~-~i~-~~~-  354 (501)
T 2jln_A          284 VIAITEVVGGV---SIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTF--KTG-VIVSAVVGL-LMM-PWQ-  354 (501)
T ss_dssp             HHHHHHHHTCC---CHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCH--HHH-HHHHHHHHH-HTC-GGG-
T ss_pred             HHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccch--hHH-HHHHHHHHH-HHH-HHH-
Confidence            44555543 44   23 33444 5555555566664 6788777777765432222  222 112222221 111 122 


Q ss_pred             CcchhHHHHHHHHHHHHhHhHHHHHHH--HHHHcCCc
Q 020153          214 SEDMLDVLNEWLNVLQSVQIPFALIPL--LYLVSQEH  248 (330)
Q Consensus       214 ~p~~l~~l~~~~qvi~~l~LP~~li~L--l~l~n~r~  248 (330)
                      +   ...+..+...+..++-|...+.+  .++.++++
T Consensus       355 ~---~~~f~~FL~~lg~~l~P~~gI~l~Dy~i~rr~~  388 (501)
T 2jln_A          355 F---AGVLNTFLNLLASALGPLAGIMISDYFLVRRRR  388 (501)
T ss_dssp             T---HHHHHHHHHHHHHTTHHHHHHHHHHHHTTSTTC
T ss_pred             h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            1   23566677777788888887776  34445543

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=93.44  E-value=6.5  Score=38.81  Aligned_cols=49  Identities=14%  Similarity=-0.113  Sum_probs=31.9

Q ss_pred             CchhHHHHHHHhcCCChhHHHHHHHHHHHHhhhhhHhhhhhHHHH-HHhhhcC
Q 020153          133 GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF-IMGGFLN  184 (330)
Q Consensus       133 ~~~~aa~~L~p~~G~~~~~a~~lFaiGL~aAg~sS~i~~~~a~~~-v~~g~l~  184 (330)
                      +.+++.-.+-..+++   +..-++..|+++|.+|+.-....+.+. +.+++.+
T Consensus       305 ~~d~~~p~l~~~lp~---~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~  354 (530)
T 3dh4_A          305 NADKAYPWLTQFLPV---GVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYK  354 (530)
T ss_dssp             SGGGHHHHHHTTCCT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CcchHHHHHHHHcch---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH
Confidence            344443333347777   667788899999999987666555544 3566643

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=88.98  E-value=17  Score=34.91  Aligned_cols=25  Identities=8%  Similarity=-0.158  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHhhhhhHhhhhhHH
Q 020153          151 PILYIWGIGLLAAGQSSTITGTYAG  175 (330)
Q Consensus       151 ~a~~lFaiGL~aAg~sS~i~~~~a~  175 (330)
                      +...++.++.+.+.+++..+..+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~  312 (511)
T 4djk_A          288 WTVRVISALLLLGVLAEIASWIVGP  312 (511)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777765554443

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=83.40  E-value=37  Score=33.53  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhhhhhHhhhhhHHH-HHHhhhcCc
Q 020153          151 PILYIWGIGLLAAGQSSTITGTYAGQ-FIMGGFLNL  185 (330)
Q Consensus       151 ~a~~lFaiGL~aAg~sS~i~~~~a~~-~v~~g~l~~  185 (330)
                      .-..+|-+-++-+|++|.+...-.-- .++|++ ++
T Consensus       339 ~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~~  373 (519)
T 2a65_A          339 FLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KL  373 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CC
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh-CC
Confidence            44567888899999999875544332 234443 54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00