Citrus Sinensis ID: 020160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MATHHHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccHHccHHHHcccccEEEEEcccccccHHHHHHHHccccEEEEEcccccccHHHHHHccccEEEEEEccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHccEEEEEccccccccccccHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEEEEccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHcccEccHHHHHHHccEEEEcccccccccccEcHHHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccEcccc
Coil and Loop (DISEMBL)
mathhhfavqfpqvlllrkpsgfamlgeqfftsNKFQYLKAYESALPLHEFLTLHAHSVKaifssagapVTAEILRLLPEVRLVVATsaglnhidvvECRRRGVALanagnvfsedvADYALGLLIDVLRKLSAADcfvrqglwpinaefplgsklggkrvgiVGLGSIGSEVAKRLEAFGccvsynsrnkkpsvtypfypdvcelaaNSDVLIICCALTDQTHHLINKQVLLALgkkgviinvgrgaiidEKEMVGCLLrgeiggagldvfenepdvpeqlfaldnvvlsphsavftpesFKDVCELAVANLEaffsnkplltpfaavd
Flexible Loop (DISEMBL)
mathhhfavqfpqVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATsaglnhidvveCRRRGVALAnagnvfsedVADYALGLLIDVLRKLSAADCFVRQGLWPINaefplgsklgGKRVGIVGLGSIGSEVAKRLEAFGCCVSynsrnkkpsvtyPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLlalgkkgviINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEaffsnkplltpfaavd
Low Complexity Region (SEG)
MATHHHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD
Disordered region (IsUnstruct)
****HHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF****
Disordered Region (DISOPRED)
**************LLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLT******
Disordered Region (DISEMBL)
MATHHHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD
Disordered Region (DISPRO)
********VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATHHHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.948	0.969	0.566	1e-100
Q9CA90	313	Glyoxylate/hydroxypyruvat	no	no	0.830	0.875	0.483	1e-70
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.9	0.889	0.356	5e-46
Q8U3Y2	336	Glyoxylate reductase OS=P	no	no	0.812	0.797	0.351	4e-43
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.824	0.802	0.351	2e-41
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.906	0.897	0.336	8e-41
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.921	0.907	0.332	4e-40
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.906	0.903	0.349	7e-40
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.827	0.822	0.334	2e-38
C5A1V0	334	Glyoxylate reductase OS=T	no	no	0.903	0.892	0.338	3e-37

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/314 (56%), Positives = 230/314 (73%), Gaps = 1/314 (0%)

Query: 12  PQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVT 71
           P V+LL +P     + E   T      +    S+  L  F   HA S +A   S   PVT
Sbjct: 7   PPVVLLHRPPSLTFMDE-ILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVT 65

Query: 72  AEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK 131
            E+L  LP ++++V TS G++HID+  C+RRG+ + NAGN FS+DVAD A+GLLI VLR+
Sbjct: 66  DELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRR 125

Query: 132 LSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK 191
           + AAD +VR G W    +F LGSK+ GKRVGIVGLGSIGS VAKRLE+FGC +SYNSR++
Sbjct: 126 IPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQ 185

Query: 192 KPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIID 251
           K S  Y +Y D+  LA N+DVL++CC+LTD+THH++N++V+  LGK GV+INVGRG +ID
Sbjct: 186 KQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLID 245

Query: 252 EKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVA 311
           EKEMV CL+ G IGGAGLDVFENEP VP++LF LDNVVLSPH AV TP S  +V ++A+A
Sbjct: 246 EKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALA 305

Query: 312 NLEAFFSNKPLLTP 325
           NL+AFFSN+PLL+P
Sbjct: 306 NLKAFFSNRPLLSP 319

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/275 (48%), Positives = 188/275 (68%), Gaps = 1/275 (0%)

Query: 51  FLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAG 110
            L  H +S++A+  +A A   A+++  LP + +V + S GL+ ID+ +C+ +G+ + N  
Sbjct: 38  LLETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTP 97

Query: 111 NVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIG 170
           +V +EDVAD A+GL++ +LR+L   D +VR G W    EF L +K  GK VGI+GLG IG
Sbjct: 98  DVLTEDVADLAIGLILALLRRLCECDRYVRSGKWK-QGEFQLTTKFSGKSVGIIGLGRIG 156

Query: 171 SEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ 230
           + +AKR EAF C ++Y SR  KP V Y +YP V +LA NSD+L++ C LT+QT H++++Q
Sbjct: 157 TAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQ 216

Query: 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL 290
           V+ ALG KGV+IN+GRG  +DE+E++  L  G +GGA LDVFE EP VPE+LF L+NVVL
Sbjct: 217 VMDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVL 276

Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
            PH    T E+   + +L V NLEA FS K LLTP
Sbjct: 277 LPHVGSGTVETRNAMADLVVGNLEAHFSGKSLLTP 311

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 169/317 (53%), Gaps = 20/317 (6%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
           P+VL+ RK   +G  ML E F        ++ +E    +  E L      V A+ +    
Sbjct: 3   PKVLITRKIPENGIKMLREHF-------EVEVWEDEHEISREVLLEKVRDVDALVTMLSE 55

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            + AE+    P +++V   + G ++ID+ E  + GV + N  +V +   AD A  LL+  
Sbjct: 56  RIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 129 LRKLSAADCFVRQGLWPIN--AEFPL---GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
            R+L  AD FVR G W     A  PL   G  + G+ +GIVG G IG  +A+R + FG  
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMR 175

Query: 184 VSYNSRNKKPSVTYP----FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
           + YNSR +KP V       F P + EL   SD +++   LT +T+H+IN++ L  +    
Sbjct: 176 ILYNSRTRKPEVEKELGAEFMP-LDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTA 234

Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299
           +++N+ RG ++D + +V  L  G I GAGLDVFE EP   E+LF+LDNVVL+PH    T 
Sbjct: 235 ILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVVLAPHIGSATY 294

Query: 300 ESFKDVCELAVANLEAF 316
            + + + EL   NL AF
Sbjct: 295 GAREGMAELVARNLIAF 311

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 147/276 (53%), Gaps = 8/276 (2%)

Query: 49  HEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN 108
            E L      V A+ +     +  E+    P +R+V   + G ++IDV E  RRG+ + N
Sbjct: 36  REKLLEKVKDVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTN 95

Query: 109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGI 163
             +V +   AD+A  LL+   R +   D FVR G W       + ++ LG +L GK +GI
Sbjct: 96  TPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGI 155

Query: 164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALT 220
           VG G IG  +A+R + F   + Y SR +K          Y  + E+   SD +I+   LT
Sbjct: 156 VGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLT 215

Query: 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE 280
            +T ++IN++ L  +    +++N+ RG ++D K ++  L  G I GAGLDVFE EP   E
Sbjct: 216 KETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNE 275

Query: 281 QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
           +LF+LDNVVL+PH    T E+ + + EL   NL AF
Sbjct: 276 ELFSLDNVVLTPHIGSATFEAREAMAELVARNLIAF 311

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 148/279 (53%), Gaps = 7/279 (2%)

Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVAL 106
           P  E L  +     A+       + AE++   P ++++   S G +HID+ E  +RG+ +
Sbjct: 36  PSREELLRNIRDKDALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYV 95

Query: 107 ANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLW--PINAEFPLGSKLGGKRVGIV 164
            +   V ++ VA++ +GL++ V R++  AD  +R G W  P N  F  G +L GK +G+V
Sbjct: 96  THTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLV 155

Query: 165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF----YPDVCELAANSDVLIICCALT 220
           GLG IG   AKRL +F   + Y    ++  V        + D+  L   SD++ I   LT
Sbjct: 156 GLGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLT 215

Query: 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE 280
            +T+HLIN++ L  + K   +IN  RG ++D + +V  L  G I GA LDVFE EP  P 
Sbjct: 216 KETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPN 275

Query: 281 Q-LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFS 318
             L   DNVVL+PH A  T E+ + + ELA  NL A   
Sbjct: 276 HPLTKFDNVVLAPHIASATIEARQRMAELAARNLIAVLK 314

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  167 bits (424), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 164/315 (52%), Gaps = 16/315 (5%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P+V + R    +G  ML E F        +   E  +P  E L      V A+ +     
Sbjct: 3   PKVFITRAIPENGIEMLKEHFEVE-----VWPEEREIP-REVLLKKVRDVDALVTMLSER 56

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           + +E+    P +R+V   + G ++IDV E  RRG+ + N  +V ++  AD+A  LL+   
Sbjct: 57  IDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATA 116

Query: 130 RKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+L  AD F R G W       +  + LG  + GK +GIVG G IG  VA+R   FG  +
Sbjct: 117 RRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRI 176

Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
            Y SR++KP         +  + +L   SD +++   LT +T ++IN++ L  + K  ++
Sbjct: 177 LYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           +N+ RG ++D K ++  L  G I GAGLDV+E EP   E+LF+L NVVL+PH    T  +
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGA 296

Query: 302 FKDVCELAVANLEAF 316
            + + EL   NL AF
Sbjct: 297 REGMAELVARNLIAF 311

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 167/325 (51%), Gaps = 21/325 (6%)

Query: 9   VQFPQVLLLRK--PSGFAMLGEQFFTS--NKFQYLKAYESALPLHEFLTLHAHSVKAIFS 64
           ++ P+V + R+  P    +L + +     +K+Q         P +E L   A    A+++
Sbjct: 1   MKRPRVFVTREVFPEALELLSKYYDVEVWDKYQP--------PPYETLLSKAREADALYT 52

Query: 65  SAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGL 124
                +  ++L   P +R+V   + G ++IDV    R G+ + N   V +E  A++   L
Sbjct: 53  LLTDRIDCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWAL 112

Query: 125 LIDVLRKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA 179
           ++   R++  AD FVR G W       +    LG +L GK +GI+G+G IGS VA+  +A
Sbjct: 113 ILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKA 172

Query: 180 FGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236
           FG  + Y+SR++K  +       Y  + +L   SD+L I   LTD+T HLI +  L  + 
Sbjct: 173 FGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 237 KKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPHSA 295
           K  +++N GRGAI+D   +V  L  G I  A LDVFE EP  P   L A  NVVL+PH+A
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAA 292

Query: 296 VFTPESFKDVCELAVANLEAFFSNK 320
             T E+   +  +A  NL AF   K
Sbjct: 293 SATRETRLRMAMMAAENLVAFAQGK 317

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 164/315 (52%), Gaps = 16/315 (5%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P+V + R+   +G  M+ E+F+    ++  KA     P    L      V A+ +     
Sbjct: 3   PKVFITRQIPENGIKMI-EKFYEIELWKDPKA-----PPRGVLLEKVREVDALVTLVTDK 56

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           V  E+L   P+++++   + G ++ID+ E  +RG+ + N   V ++  AD A  LL+ V 
Sbjct: 57  VDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVA 116

Query: 130 RKLSAADCFVRQGLWPIN--AEFPL---GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R++  AD FVR G W  +     PL   G  L GK +GIVG G IG  +AKR + FG  +
Sbjct: 117 RRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKI 176

Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
            Y SR +KP         Y D   L   SD + +   LT +T+H+I ++ L  +    ++
Sbjct: 177 IYYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAIL 236

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           IN  RGA++D   ++  L  G I GAGLDVFE EP   E+LF L NVVL+PH    T E+
Sbjct: 237 INTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEA 296

Query: 302 FKDVCELAVANLEAF 316
            + + EL   NL AF
Sbjct: 297 REGMAELVAKNLIAF 311

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 154/281 (54%), Gaps = 8/281 (2%)

Query: 43  ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
           + A P  + +        A+ S    P+ AE+    P++R+V   + G ++IDV E  +R
Sbjct: 30  DEAPPSKKVIIERVKDCDALVSLLTDPIDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKR 89

Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFP---LGSKLGGK 159
           G+ + N   V +E  AD+A  LL+   R++  AD +VR+G W + A  P   LG  + G+
Sbjct: 90  GIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKV-AWHPMMMLGYDVYGR 148

Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIIC 216
            +GIVG+G IG+ VA+R + FG  + Y    ++          Y  + +L   SD + + 
Sbjct: 149 TLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDFEKELGVEYVPLEKLLEESDFVSLH 208

Query: 217 CALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP 276
             LT++T+H+I ++ L  + +  +++N  RG ++D+K +   L  G I GAGLDVFE EP
Sbjct: 209 VPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEP 268

Query: 277 DVPEQ-LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
             P+  L  L+NVVL+PH+A  + E+   + E+   NL AF
Sbjct: 269 IPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIAF 309

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 18/316 (5%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P+V + R    +G  ML E F        +   E  +P  E L      V A+ +     
Sbjct: 3   PKVFITRAIPENGIDMLREHFEVE-----VWPEEREIP-REVLLEKVRDVDALVTMLSER 56

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +  E+    P +R+V   + G +++DV E  RRG+ + N  +V +   AD+A  LL+   
Sbjct: 57  IDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATA 116

Query: 130 RKLSAADCFVRQGLWPIN--AEFPL---GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+L  AD F R G W     A  PL   G  + GK +GI+G G IG  VA+R + FG  +
Sbjct: 117 RRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRI 176

Query: 185 SYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
            Y SR +KP     +   F P + EL   SD +++   LT +T+H+I ++ L  +    +
Sbjct: 177 LYYSRTRKPEAEEELKAEFKP-LEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAI 235

Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
           ++N+ RG ++D + ++  L  G I GAGLDVFE EP   E+LF+L NV+L+PH    T  
Sbjct: 236 LVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVILAPHIGSATFG 295

Query: 301 SFKDVCELAVANLEAF 316
           + + + EL   NL AF
Sbjct: 296 AREGMAELVARNLIAF 311

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
317106635	331	JHL05D22.12 [Jatropha curcas]	0.957	0.954	0.705	1e-131
255541386	328	glycerate dehydrogenase, putative [Ricin	0.957	0.963	0.680	1e-128
224127466	331	predicted protein [Populus trichocarpa]	0.990	0.987	0.685	1e-126
224063943	291	predicted protein [Populus trichocarpa]	0.881	1.0	0.731	1e-124
359489392	341	PREDICTED: glyoxylate reductase isoform	0.948	0.917	0.695	1e-121
317106633	333	JHL05D22.10 [Jatropha curcas]	0.954	0.945	0.673	1e-121
296089114	989	unnamed protein product [Vitis vinifera]	0.942	0.314	0.693	1e-119
255541390	333	glycerate dehydrogenase, putative [Ricin	0.993	0.984	0.637	1e-119
317106634	333	JHL05D22.11 [Jatropha curcas]	0.978	0.969	0.637	1e-118
224127470	339	predicted protein [Populus trichocarpa]	0.993	0.967	0.664	1e-118

>gi|317106635|dbj|BAJ53141.1| JHL05D22.12 [Jatropha curcas]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/316 (70%), Positives = 263/316 (83%)

Query: 11  FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPV 70
            P+VLLL+KP  F     + FTS KFQYLKAYES LPLH+FL  HA SV+A+ +S GA +
Sbjct: 13  LPKVLLLKKPPSFQFFEGESFTSTKFQYLKAYESPLPLHQFLAAHAQSVQAVLASGGASI 72

Query: 71  TAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130
            A+IL+LLP VR+VV TSAGLN ID+ ECRRRG+A+ANAG+V+S DVAD A+GLLIDVLR
Sbjct: 73  NADILQLLPAVRVVVTTSAGLNQIDIPECRRRGIAIANAGDVYSADVADLAVGLLIDVLR 132

Query: 131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
           K+SA+D +VRQGLW    ++PLG+KL GKR GIVGLG IG EVAKRLEAFGC +SYNSR 
Sbjct: 133 KISASDRYVRQGLWATKGDYPLGAKLSGKRAGIVGLGRIGYEVAKRLEAFGCYISYNSRK 192

Query: 191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
           KKP+V+YPFY +V ELAAN D LIICC LT QT H+INK+VL ALGKKGVI+N+GRGAII
Sbjct: 193 KKPNVSYPFYQNVSELAANCDALIICCGLTKQTFHMINKEVLSALGKKGVIVNIGRGAII 252

Query: 251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAV 310
           DEKEMV CL+ GEI GAGLDVFENEPDVP++ F ++NVVLSPH+AVFTPES KD+ EL V
Sbjct: 253 DEKEMVRCLVAGEIAGAGLDVFENEPDVPKEFFTMENVVLSPHTAVFTPESLKDLSELVV 312

Query: 311 ANLEAFFSNKPLLTPF 326
            NLEAFFSNKPLL+ +
Sbjct: 313 GNLEAFFSNKPLLSEY 328

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541386|ref|XP_002511757.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548937|gb|EEF50426.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/316 (68%), Positives = 264/316 (83%)

Query: 11  FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPV 70
           FP+VLL  KP  F ++GE+ FTS KF+YLKAYES LPLH+FL  HA SV+AI SS GAPV
Sbjct: 10  FPKVLLFIKPPAFTVIGEESFTSTKFRYLKAYESPLPLHQFLAQHAQSVQAILSSGGAPV 69

Query: 71  TAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130
           TA+ILR LP VR++V TSAGLN ID+ ECRRRG+++ANAG+V+S DVAD A+GLLIDVLR
Sbjct: 70  TADILRFLPSVRVIVTTSAGLNQIDLPECRRRGISIANAGDVYSADVADLAIGLLIDVLR 129

Query: 131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
            +SA+D +V+QGLW    ++PLG KL GKR+GIVGLGSIG EVAKRL+AFGC +SYNSR 
Sbjct: 130 NISASDRYVKQGLWSSKGDYPLGFKLSGKRIGIVGLGSIGYEVAKRLDAFGCYISYNSRK 189

Query: 191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
           +K  V+YPFYP+VCELAAN D L+ICC LTDQT H+IN+QV  ALGK GV++N+GRG II
Sbjct: 190 QKFYVSYPFYPNVCELAANCDALVICCGLTDQTFHMINEQVFSALGKNGVVVNIGRGPII 249

Query: 251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAV 310
           DEKE++ CL+ GEI GAGLDVFENEP++P++  +++NVVLSPH AVFTPES KD+ EL V
Sbjct: 250 DEKELIRCLVEGEIAGAGLDVFENEPNIPQEFVSMNNVVLSPHCAVFTPESMKDLSELVV 309

Query: 311 ANLEAFFSNKPLLTPF 326
            NLEAFF+NKPLL+ +
Sbjct: 310 GNLEAFFANKPLLSEY 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127466|ref|XP_002320081.1| predicted protein [Populus trichocarpa] gi|222860854|gb|EEE98396.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/328 (68%), Positives = 277/328 (84%), Gaps = 1/328 (0%)

Query: 1   MATHHHFAVQ-FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSV 59
           ++T  H A Q FP+VL+L+  S  A +GE+   SNKF +LKAYES+LPLH+FL+ H+ S+
Sbjct: 3   VSTDCHKAQQDFPKVLILKPISFLAHVGERHVASNKFTFLKAYESSLPLHQFLSTHSPSI 62

Query: 60  KAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVAD 119
           KAI SS G P+TA+IL+LLPEV +VV TS GLN +D+ ECRRRG+ +ANAG+VFS+DVAD
Sbjct: 63  KAILSSVGTPITADILQLLPEVGVVVTTSVGLNQVDLPECRRRGIKVANAGSVFSDDVAD 122

Query: 120 YALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA 179
           +A+GLLIDVLRK+SA+D +VR+GLW    ++PLGSKLGGKR+GIVGLG+IG  VAKRLEA
Sbjct: 123 FAVGLLIDVLRKVSASDGYVRKGLWATKGDYPLGSKLGGKRIGIVGLGNIGFAVAKRLEA 182

Query: 180 FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
           FGC +SYNSR +KP V+YPFY  VCELAAN DVL+ICC LTDQT H+INK+VL ALGK+G
Sbjct: 183 FGCSISYNSRKRKPHVSYPFYESVCELAANCDVLVICCELTDQTRHMINKEVLSALGKEG 242

Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299
           VI+N+GRGAII+EKEMV CL++GEI GAGLDVFENEPDVP +LFA+DNVVLSPH AVFTP
Sbjct: 243 VIVNIGRGAIINEKEMVQCLVQGEIAGAGLDVFENEPDVPVELFAMDNVVLSPHIAVFTP 302

Query: 300 ESFKDVCELAVANLEAFFSNKPLLTPFA 327
           ESF D+ +L + NLEAFFSNKPLL+ + 
Sbjct: 303 ESFLDLMDLVMGNLEAFFSNKPLLSEYG 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063943|ref|XP_002301313.1| predicted protein [Populus trichocarpa] gi|222843039|gb|EEE80586.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/291 (73%), Positives = 248/291 (85%)

Query: 34  NKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNH 93
           NKFQ+LK Y+S LPL +FL+ H+HS+KAI SS GAPV A+IL+LLPEV +VV TSAGLN 
Sbjct: 1   NKFQFLKTYDSQLPLDQFLSTHSHSIKAILSSGGAPVNADILQLLPEVGVVVTTSAGLNQ 60

Query: 94  IDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLG 153
           ID+ ECRRRG+ +ANAG V+S DVAD A+GLLIDVLRK+SA+D +VRQGLW     +PLG
Sbjct: 61  IDIPECRRRGIKIANAGYVYSADVADMAVGLLIDVLRKVSASDRYVRQGLWAAKGNYPLG 120

Query: 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVL 213
           SKL GKR GIVGLG+IG EVAKRLEAFGC VSYNSR KKP+V+YPFY DVCELAAN D L
Sbjct: 121 SKLSGKRAGIVGLGNIGYEVAKRLEAFGCFVSYNSRKKKPNVSYPFYHDVCELAANCDAL 180

Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE 273
           IICC L+D+T H+INKQVL ALGK+GVI+N+GRGAIIDEKEMV CL++GEI GAGLDVFE
Sbjct: 181 IICCGLSDETRHMINKQVLSALGKEGVIVNIGRGAIIDEKEMVRCLMQGEIAGAGLDVFE 240

Query: 274 NEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLT 324
            EP VP++ FA+DNVVLSPH AVFTPES KD+ +L V NLEAF SNKPLL+
Sbjct: 241 TEPSVPKEFFAMDNVVLSPHRAVFTPESLKDLSQLVVGNLEAFLSNKPLLS 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489392|ref|XP_003633919.1| PREDICTED: glyoxylate reductase isoform 1 [Vitis vinifera]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/315 (69%), Positives = 263/315 (83%), Gaps = 2/315 (0%)

Query: 11  FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPV 70
            PQ+L+L+ PS F+    +F  S KFQ LKA+ES LP   FLT HAHSVKA+ SS+ +P+
Sbjct: 25  LPQLLILKPPSLFSDFQYKF--SPKFQLLKAWESPLPTTLFLTTHAHSVKAVVSSSSSPI 82

Query: 71  TAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130
           T++ILR LP ++LVVAT+ GLN ID+ ECRRRG+++ANAG + SED AD  +GL IDVL+
Sbjct: 83  TSDILRHLPSLQLVVATTVGLNQIDLPECRRRGISIANAGKILSEDCADMGVGLFIDVLK 142

Query: 131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
           K+SA D FVR GLWPI  +FPLGSKLGGKRVGIVGLGSIG EVAKRLEAFGC + YNSR 
Sbjct: 143 KISAGDRFVRSGLWPIQKDFPLGSKLGGKRVGIVGLGSIGLEVAKRLEAFGCIILYNSRR 202

Query: 191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
           KK +++YPFY +VCELAANS+ LIICCALTD+T H+INK+V+ ALGK+GVIIN+GRGAII
Sbjct: 203 KKANISYPFYSNVCELAANSNALIICCALTDETRHMINKEVMKALGKEGVIINIGRGAII 262

Query: 251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAV 310
           DEKE+V CL++GEIGGAGLDVFENEPDVP++LF LDNVVLSPH AVFT ESF D+ +L V
Sbjct: 263 DEKELVQCLVQGEIGGAGLDVFENEPDVPKELFTLDNVVLSPHVAVFTQESFSDLYDLMV 322

Query: 311 ANLEAFFSNKPLLTP 325
            NLEAFFSNK LL+P
Sbjct: 323 GNLEAFFSNKTLLSP 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106633|dbj|BAJ53139.1| JHL05D22.10 [Jatropha curcas]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/315 (67%), Positives = 254/315 (80%)

Query: 11  FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPV 70
            PQVLLL+ P    +LGE  F SN++Q LKA+ES LPLH+ LT HA+S++AI  S  +PV
Sbjct: 15  LPQVLLLKPPPVVTVLGEDQFLSNRYQLLKAWESPLPLHQLLTKHANSIQAILCSGDSPV 74

Query: 71  TAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130
           T ++L+ LP VRLVV  SAG+NHID++ CRRRG+++ NAG VFS+  AD A+GL  DVLR
Sbjct: 75  TDDLLQRLPSVRLVVTASAGINHIDLIACRRRGISVTNAGIVFSDGGADAAVGLYFDVLR 134

Query: 131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
           K+SAAD +VRQGLW    ++PL SK+GGKRVGIVGLGSIGSEVAKRLEAFGC +SYNSR 
Sbjct: 135 KISAADRYVRQGLWVKKGDYPLASKIGGKRVGIVGLGSIGSEVAKRLEAFGCIISYNSRK 194

Query: 191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
           KK    YPFY  VCELAANSD LIICCALTDQT H+INK+VL ALGK+GVI+N+GRGAI+
Sbjct: 195 KKNFAPYPFYSSVCELAANSDALIICCALTDQTQHMINKEVLSALGKEGVIVNIGRGAIV 254

Query: 251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAV 310
           DEKE+V  L+ G+I GAGLDVFENEP VP++LF +DNVVLSPH AVFTPESF  +C+L V
Sbjct: 255 DEKELVRFLMEGKIAGAGLDVFENEPHVPKELFGMDNVVLSPHIAVFTPESFMALCKLVV 314

Query: 311 ANLEAFFSNKPLLTP 325
            NLEA FSN  LL+P
Sbjct: 315 GNLEAVFSNGRLLSP 329

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089114|emb|CBI38817.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/313 (69%), Positives = 262/313 (83%), Gaps = 2/313 (0%)

Query: 13  QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTA 72
           ++L+L+ PS F+    +F  S KFQ LKA+ES LP   FLT HAHSVKA+ SS+ +P+T+
Sbjct: 675 KLLILKPPSLFSDFQYKF--SPKFQLLKAWESPLPTTLFLTTHAHSVKAVVSSSSSPITS 732

Query: 73  EILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKL 132
           +ILR LP ++LVVAT+ GLN ID+ ECRRRG+++ANAG + SED AD  +GL IDVL+K+
Sbjct: 733 DILRHLPSLQLVVATTVGLNQIDLPECRRRGISIANAGKILSEDCADMGVGLFIDVLKKI 792

Query: 133 SAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK 192
           SA D FVR GLWPI  +FPLGSKLGGKRVGIVGLGSIG EVAKRLEAFGC + YNSR KK
Sbjct: 793 SAGDRFVRSGLWPIQKDFPLGSKLGGKRVGIVGLGSIGLEVAKRLEAFGCIILYNSRRKK 852

Query: 193 PSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDE 252
            +++YPFY +VCELAANS+ LIICCALTD+T H+INK+V+ ALGK+GVIIN+GRGAIIDE
Sbjct: 853 ANISYPFYSNVCELAANSNALIICCALTDETRHMINKEVMKALGKEGVIINIGRGAIIDE 912

Query: 253 KEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVAN 312
           KE+V CL++GEIGGAGLDVFENEPDVP++LF LDNVVLSPH AVFT ESF D+ +L V N
Sbjct: 913 KELVQCLVQGEIGGAGLDVFENEPDVPKELFTLDNVVLSPHVAVFTQESFSDLYDLMVGN 972

Query: 313 LEAFFSNKPLLTP 325
           LEAFFSNK LL+P
Sbjct: 973 LEAFFSNKTLLSP 985

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541390|ref|XP_002511759.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548939|gb|EEF50428.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/334 (63%), Positives = 258/334 (77%), Gaps = 6/334 (1%)

Query: 1   MATHHHFAVQ----FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHA 56
           MA H     Q     P+VL+L +   F     +   S KF +LKA+ES LPLH+FL  HA
Sbjct: 1   MANHPQNYQQPQSLLPEVLVLERSPVFKF--HEHRLSQKFHFLKAWESQLPLHQFLAAHA 58

Query: 57  HSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSED 116
           +SV+ + SS   PVTA  +RLLP +RL+V TSAGLNHID+ ECRR+G+A+A AG+++SED
Sbjct: 59  YSVQVLLSSGRDPVTANNIRLLPSLRLIVTTSAGLNHIDLQECRRQGIAIATAGSLYSED 118

Query: 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKR 176
           VAD  +GL IDVLRK+SA+D +VRQG WP   +FPLG KL G++VGIVGLGSIG EVAKR
Sbjct: 119 VADLTVGLFIDVLRKISASDQYVRQGSWPTKGDFPLGFKLRGRQVGIVGLGSIGLEVAKR 178

Query: 177 LEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236
           +EAFGC + YNSRNKKPSV YP+Y +VCELAAN DVLIICC LTDQT H+INK+V  ALG
Sbjct: 179 VEAFGCKIMYNSRNKKPSVPYPYYSNVCELAANCDVLIICCGLTDQTRHMINKEVFEALG 238

Query: 237 KKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAV 296
           K+GVI+NVGRG IIDE+EMV  L++GEI GAGLDVFENEP VP++L  L+NVVLSPH AV
Sbjct: 239 KEGVIVNVGRGVIIDEQEMVQRLVQGEIAGAGLDVFENEPHVPKELTVLNNVVLSPHRAV 298

Query: 297 FTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD 330
            T E+   +CEL + NLEAFFSNKPLLTP  A+D
Sbjct: 299 HTTENLVALCELVIGNLEAFFSNKPLLTPITAID 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106634|dbj|BAJ53140.1| JHL05D22.11 [Jatropha curcas]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 257/331 (77%), Gaps = 8/331 (2%)

Query: 1   MATH------HHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTL 54
           MA H      H      PQVL+L  P  F    +Q   S KF++LKA+ES LPL++FL  
Sbjct: 1   MACHTLQNHDHQQENLLPQVLVLEPPPLFKFHEDQL--SQKFRFLKAWESPLPLNQFLIS 58

Query: 55  HAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFS 114
           HA S++ + SS   PVTA+ LRLLP +R++V TSAGLNHID+  CR RG+ +A+AG+V+S
Sbjct: 59  HASSIQVLLSSGTCPVTADTLRLLPSLRVLVTTSAGLNHIDLQACRERGIPIASAGSVYS 118

Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVA 174
           EDVAD A+GLLIDV+RK+SA+D +VRQ  WPI  + PLGSKL G++VGIVGLG+IG EVA
Sbjct: 119 EDVADIAVGLLIDVIRKISASDRYVRQDSWPIKGDSPLGSKLRGRQVGIVGLGNIGLEVA 178

Query: 175 KRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
           KRLEAFGC + YNSR KKPSV YP+Y +VCELAAN +VLIICC L+ QTHHLINK+VL  
Sbjct: 179 KRLEAFGCNILYNSRKKKPSVIYPYYSNVCELAANCNVLIICCGLSKQTHHLINKEVLSE 238

Query: 235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHS 294
           LGK GVIINVGRGAIIDE+EMV CL++G I GAGLDVFENEP+VP++L  LDNVVLSPH 
Sbjct: 239 LGKDGVIINVGRGAIIDEQEMVQCLMQGTIAGAGLDVFENEPNVPKELVELDNVVLSPHR 298

Query: 295 AVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           A  T E+  D+C+L + NLEAFFSNKPLL+P
Sbjct: 299 AAHTSETLMDLCQLVIGNLEAFFSNKPLLSP 329

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127470|ref|XP_002320082.1| predicted protein [Populus trichocarpa] gi|222860855|gb|EEE98397.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/328 (66%), Positives = 261/328 (79%)

Query: 2   ATHHHFAVQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKA 61
           +  +H     PQVLLL+ P   +++GEQ F S K+Q+LKA+ES LPL +FLT HA S++A
Sbjct: 12  SDQNHKPQDLPQVLLLKPPPVLSVIGEQPFLSKKYQFLKAWESPLPLLQFLTAHADSIQA 71

Query: 62  IFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYA 121
           I  S  APVT ++L+LLP VRLVV  SAG NHID+  C RRG+++ NAGNVFS+D AD A
Sbjct: 72  ILCSGAAPVTDDLLQLLPSVRLVVTASAGTNHIDLEACHRRGISVTNAGNVFSDDGADAA 131

Query: 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
           +GLLIDVLRK++A+D +VRQGLW    ++PLGSKL GKRVGIVGLG IG E+AKRLEAFG
Sbjct: 132 VGLLIDVLRKITASDRYVRQGLWVNKGDYPLGSKLRGKRVGIVGLGGIGLEIAKRLEAFG 191

Query: 182 CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
           C V YNSR KK  ++YPFY DV +LAANSD LIICCALT+QT H+I+K V  ALGK+GVI
Sbjct: 192 CNVLYNSRKKKAHLSYPFYSDVRQLAANSDALIICCALTNQTRHMIDKDVFSALGKEGVI 251

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           +N+GRGAI+DEKEMV CL+ GEI GAGLDVFENEPDVP++LF LDNVVLSPH AVFT ES
Sbjct: 252 VNIGRGAIVDEKEMVRCLVHGEIAGAGLDVFENEPDVPKELFELDNVVLSPHRAVFTSES 311

Query: 302 FKDVCELAVANLEAFFSNKPLLTPFAAV 329
           F  +CEL V NLEAFFSN PLL+P   V
Sbjct: 312 FMALCELVVGNLEAFFSNTPLLSPVIDV 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.957	0.934	0.630	3.5e-107
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.945	0.965	0.568	1.9e-92
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.827	0.872	0.485	3e-69
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.751	0.792	0.377	1.7e-41
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.745	0.790	0.347	1.3e-38
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.745	0.790	0.347	1.3e-38
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.851	0.886	0.352	2.6e-38
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.845	0.863	0.344	4.9e-37
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.715	0.719	0.351	9.2e-36
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.718	0.722	0.341	1.7e-34

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 200/317 (63%), Positives = 258/317 (81%)

Query:    10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
             + P+VL++++P   A+LG+ F  S KF+ LKA+ES LPL EFL  H+ S+ AI +   AP
Sbjct:    20 KLPRVLIVKRPDAMAVLGDGFVASTKFEILKAFESPLPLPEFLAYHSDSISAIIAPVAAP 79

Query:    70 VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
             VTA+++R+LP +RLVV TSAG++H+D+VECRRRG+++ANAG+ FSEDVAD A+GLLIDV 
Sbjct:    80 VTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTAVGLLIDVF 139

Query:   130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
             R++SAA+ FV+Q  WP+  ++PLGSKLG KR+GIVGLGSIGS+VA RL+AFGC +SY+SR
Sbjct:   140 RRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATRLDAFGCQISYSSR 199

Query:   190 NKKP-SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
             N+KP  V Y +Y D+ E+AANSD LIICC L ++T  LINK VL ALGK+GVI+NV RGA
Sbjct:   200 NRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSALGKRGVIVNVARGA 259

Query:   249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCEL 308
             IIDE+EMV CL  GEIGGAGLDVFE+EP+VP++LF LDNVV SPHSA  T E  +++ ++
Sbjct:   260 IIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNVVFSPHSAFMTLEGLEELGKV 319

Query:   309 AVANLEAFFSNKPLLTP 325
              V N+EAFFSNKPLLTP
Sbjct:   320 VVGNIEAFFSNKPLLTP 336

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 179/315 (56%), Positives = 233/315 (73%)

Query:    12 PQVLLLRKPSGFAMLGEQFFTSNKFQYLKA-YESALPLHEFLTLHAHSVKAIFSSAGAPV 70
             P V+LL +P     + E    + +F+ L     S+  L  F   HA S +A   S   PV
Sbjct:     7 PPVVLLHRPPSLTFMDE--ILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPV 64

Query:    71 TAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130
             T E+L  LP ++++V TS G++HID+  C+RRG+ + NAGN FS+DVAD A+GLLI VLR
Sbjct:    65 TDELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLR 124

Query:   131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
             ++ AAD +VR G W    +F LGSK+ GKRVGIVGLGSIGS VAKRLE+FGC +SYNSR+
Sbjct:   125 RIPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRS 184

Query:   191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
             +K S  Y +Y D+  LA N+DVL++CC+LTD+THH++N++V+  LGK GV+INVGRG +I
Sbjct:   185 QKQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLI 244

Query:   251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAV 310
             DEKEMV CL+ G IGGAGLDVFENEP VP++LF LDNVVLSPH AV TP S  +V ++A+
Sbjct:   245 DEKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIAL 304

Query:   311 ANLEAFFSNKPLLTP 325
             ANL+AFFSN+PLL+P
Sbjct:   305 ANLKAFFSNRPLLSP 319

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 133/274 (48%), Positives = 188/274 (68%)

Query:    52 LTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGN 111
             L  H +S++A+  +A A   A+++  LP + +V + S GL+ ID+ +C+ +G+ + N  +
Sbjct:    39 LETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPD 98

Query:   112 VFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGS 171
             V +EDVAD A+GL++ +LR+L   D +VR G W    EF L +K  GK VGI+GLG IG+
Sbjct:    99 VLTEDVADLAIGLILALLRRLCECDRYVRSGKWK-QGEFQLTTKFSGKSVGIIGLGRIGT 157

Query:   172 EVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231
              +AKR EAF C ++Y SR  KP V Y +YP V +LA NSD+L++ C LT+QT H++++QV
Sbjct:   158 AIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQV 217

Query:   232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLS 291
             + ALG KGV+IN+GRG  +DE+E++  L  G +GGA LDVFE EP VPE+LF L+NVVL 
Sbjct:   218 MDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLL 277

Query:   292 PHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
             PH    T E+   + +L V NLEA FS K LLTP
Sbjct:   278 PHVGSGTVETRNAMADLVVGNLEAHFSGKSLLTP 311

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 94/249 (37%), Positives = 140/249 (56%)

Query:    77 LLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAAD 136
             LLP + ++     G + IDV     RG+ + N   V ++DVAD A+ +L+   R++    
Sbjct:    62 LLPGLGVIANFGVGYDAIDVAAATARGITVTNTPGVLNDDVADLAVTMLLMQCRRMEQGG 121

Query:   137 CFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT 196
              +VR+G W   A FPL  K  G   G+VGLG IG E+A RL AF   + Y +R++K +  
Sbjct:   122 AWVREGHWE-TANFPLNRKASGGVAGVVGLGRIGREIADRLAAFKMDIHYFARSEKDTPG 180

Query:   197 YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
             + ++ D   LA   D L++      +T   I+++V+ ALG +GV++N+ RG+ IDE  ++
Sbjct:   181 WTYHADPVSLAKAVDFLVVALVGGPETEKFISREVIEALGPRGVVVNISRGSTIDETALL 240

Query:   257 GCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
               L RG I GA LDVF NEP +  +  AL NVVL PH    T E+   +  L   N+ A 
Sbjct:   241 DALERGRIAGAALDVFLNEPTIDPRFLALSNVVLQPHQGSGTVETRAAMGALQRGNIAAH 300

Query:   317 FSNKPLLTP 325
              + KP+LTP
Sbjct:   301 LAGKPVLTP 309

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 88/253 (34%), Positives = 143/253 (56%)

Query:    78 LPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAAD 136
             LPE ++L+     G ++ID+     +G+A+ N   V +ED AD A  L++   R+L+A +
Sbjct:    57 LPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLTANE 115

Query:   137 CFVRQGLWPI-NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--- 192
              F+R G W   N    LG  + G ++GI+G G IG  VA+R +AF   + Y+   +K   
Sbjct:   116 KFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDA 175

Query:   193 -PSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIID 251
               S+   ++ ++ ++ A SD++ I C L + THHLIN   +  +    +++N GRG +ID
Sbjct:   176 EVSLEAVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLID 235

Query:   252 EKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVA 311
             E  +VG + +G +  AGLDVFE+EP++ +QL  L NV L+PH    T +    +   A+ 
Sbjct:   236 ESALVGAMKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGAMAACAIG 295

Query:   312 NLEAFFSNKPLLT 324
             N+ A    + LLT
Sbjct:   296 NILAQMEGRILLT 308

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 88/253 (34%), Positives = 143/253 (56%)

Query:    78 LPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAAD 136
             LPE ++L+     G ++ID+     +G+A+ N   V +ED AD A  L++   R+L+A +
Sbjct:    57 LPESIKLIANIGVGYDNIDLAAATAKGIAVTNTP-VVTEDTADLAFSLILAASRQLTANE 115

Query:   137 CFVRQGLWPI-NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--- 192
              F+R G W   N    LG  + G ++GI+G G IG  VA+R +AF   + Y+   +K   
Sbjct:   116 KFLRNGQWSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDA 175

Query:   193 -PSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIID 251
               S+   ++ ++ ++ A SD++ I C L + THHLIN   +  +    +++N GRG +ID
Sbjct:   176 EVSLEAVYFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLID 235

Query:   252 EKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVA 311
             E  +VG + +G +  AGLDVFE+EP++ +QL  L NV L+PH    T +    +   A+ 
Sbjct:   236 ESALVGAMKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGAMAACAIG 295

Query:   312 NLEAFFSNKPLLT 324
             N+ A    + LLT
Sbjct:   296 NILAQMEGRILLT 308

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 102/289 (35%), Positives = 147/289 (50%)

Query:    44 SALPLHEFLTLHA-HSVKAIFSSAGAPVTAEILRLLPE--VRLVVATSAGLNHIDVVECR 100
             S  PL E   L A      +  + G   +A++   +PE   RL+     G NHI V   R
Sbjct:    28 STTPLSEAEMLRALREFDIVMPTLGDMFSADVFAQVPEPRCRLLANFGVGYNHIAVAAAR 87

Query:   101 RRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGK 159
               GVA+ N     ++  AD A+ LL+   R+    +  VR G W   +    LG  + GK
Sbjct:    88 AAGVAVTNTPGAVTDATADIAMTLLLMTARRAGEGERLVRSGAWEGWHPTQMLGHHVTGK 147

Query:   160 RVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSVTYPF--YPDVCELAANSDVLIIC 216
              VGIVGLG IG  +A+R    FG  VSY +R+ K  V +P      +  LA   D L+I 
Sbjct:   148 HVGIVGLGRIGQAIARRCHFGFGMQVSYVARSDK-DVDFPVSRMESLAALAGAVDFLVIA 206

Query:   217 CALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP 276
                  +T HLI+ Q+L A+   G+++N+ RG ++DE  ++  L   +I GAGLDV+E EP
Sbjct:   207 VPGGGETRHLIDAQILAAMKPSGILVNIARGEVVDEAALIAALSERQIAGAGLDVYEFEP 266

Query:   277 DVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
              VPE L A++ V L PH    T E    +  +A+ N+ AF + + L  P
Sbjct:   267 KVPEALRAMEQVTLLPHLGTATEEVRSSMGHMALDNVAAFAAGRDLPNP 315

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 100/290 (34%), Positives = 146/290 (50%)

Query:    43 ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
             E  + L E LT       A+ S     VT E++   P +++V    AG ++ID      +
Sbjct:    29 EELISLDE-LTERVKDKDALLSLLSTKVTKEVIDAAPSLKIVANYGAGYDNIDYTYAGEK 87

Query:   103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQ-GL--W-PINAEFPLGSKLGG 158
             G+A+ N   V +E  A+    LL+   R++   D   R  G   W P+   F LG ++ G
Sbjct:    88 GIAVTNTPKVSTEATAELTFALLLAAARRIPEGDTLCRTTGFNGWAPL---FFLGREVHG 144

Query:   159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLII 215
             K +GI+GLG IG  VAKR +AFG  + Y   N+KP         Y  + EL   +D + I
Sbjct:   145 KTIGIIGLGEIGKAVAKRAKAFGMNILYTGPNRKPEAESELEATYVTLEELLQTADFITI 204

Query:   216 CCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE 275
              CA   + HH+I+++    + K   I+N  RG I+ E  +   L   EI GA LDVFE E
Sbjct:   205 NCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKTNEIEGAALDVFEFE 264

Query:   276 PDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
             P + E+L  L NVVL+PH    T E+   + E+AV N+ A    +  +TP
Sbjct:   265 PKITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNILAVLKGEEPVTP 314

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 85/242 (35%), Positives = 137/242 (56%)

Query:    81 VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
             +RL+    AG++HIDV   R+RG+ ++N   V ++D AD  + L++ V R++      ++
Sbjct:    72 MRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIPEGLAVMQ 131

Query:   141 QGLWPINAEFPL-GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-KPSVT-- 196
             +  W   A   L G ++GG+R+GI+G+G IG  VA+R  AFG  + Y++R + +P V   
Sbjct:   132 KNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARRASAFGMQIHYHNRRRLRPEVEDA 191

Query:   197 --YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKE 254
                 ++  + ++ A  DV+ + C  T  T HL+N + L  +   GVI+N  RG +IDE  
Sbjct:   192 LEATWWDSLDQMIARMDVISVNCPSTPSTFHLMNARRLKLMKPTGVIVNTSRGEVIDENA 251

Query:   255 MVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLE 314
             +   +  GEI GAGLDV+E+   V  +L  L NVVL PH    T E   ++ E  + N++
Sbjct:   252 LTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLPHMGSATLEGRIEMGEKVIINIK 311

Query:   315 AF 316
              F
Sbjct:   312 TF 313

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 83/243 (34%), Positives = 134/243 (55%)

Query:    80 EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFV 139
             ++RL+    AG+++IDV    +RG+ + N   V ++D AD A+ L++ V R++      +
Sbjct:    71 QLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMHEGVQIM 130

Query:   140 RQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-----KP 193
               G +      + +G +L GKR+GI+G+G IG  VA+R  AFG  + Y++R       + 
Sbjct:   131 EAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFGMQIHYHNRKPVSSRIEE 190

Query:   194 SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEK 253
             S+   ++  + ++ A  D++ I C  T  T HLIN + L  +  +  IIN  RG +IDE 
Sbjct:   191 SLEATYWDSLDQMLARMDIVSINCPHTPATFHLINARRLGLMKPEAYIINTARGEVIDEA 250

Query:   254 EMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANL 313
              +   +  G+I GAGLDVFE EP V  +L  L NV+L PH    T E   ++ E  + N+
Sbjct:   251 ALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLLPHMGSATIEGRTEMGEKVIINI 310

Query:   314 EAF 316
             + F
Sbjct:   311 KTF 313

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2U573	GHRB_SHIB3	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
Q5JEZ2	GYAR_PYRKO	1, ., 1, ., 1, ., 2, 6	0.3365	0.9060	0.8978	yes	no
B7N1K7	GHRB_ECO81	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
A1RYE4	GYAR_THEPD	1, ., 1, ., 1, ., 2, 6	0.3512	0.8242	0.8023	yes	no
B7M3H6	GHRB_ECO8A	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
A1AH96	GHRB_ECOK1	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
A6TFG7	GHRB_KLEP7	1, ., 1, ., 1, ., 8, 1	0.3057	0.8818	0.9009	yes	no
P53839	GOR1_YEAST	1, ., 1, ., 1, ., 2, 6	0.3267	0.8727	0.8228	yes	no
C4ZXE2	GHRB_ECOBW	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
B1X8G8	GHRB_ECODH	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
B1L765	GYAR_KORCO	1, ., 1, ., 1, ., 2, 6	0.3345	0.8272	0.8222	yes	no
B5YVK6	GHRB_ECO5E	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
B6I3C3	GHRB_ECOSE	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
B7MER0	GHRB_ECO45	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
A4W577	GHRB_ENT38	1, ., 1, ., 1, ., 8, 1	0.3174	0.8787	0.8950	yes	no
B7L6W9	GHRB_ECO55	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
B6YWH0	GYAR_THEON	1, ., 1, ., 1, ., 2, 6	0.3564	0.9	0.8892	yes	no
Q9YAW4	GYAR_AERPE	1, ., 1, ., 1, ., 2, 6	0.3323	0.9212	0.9074	yes	no
Q1R543	GHRB_ECOUT	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no
Q83PR3	GHRB_SHIFL	1, ., 1, ., 1, ., 8, 1	0.3127	0.8303	0.8456	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-139
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	7e-94
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	6e-84
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-79
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	8e-79
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	3e-71
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	5e-71
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	4e-68
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-67
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	1e-65
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-63
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-61
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	6e-61
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-59
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-57
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	9e-57
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	3e-56
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	9e-56
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	9e-56
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-55
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	3e-53
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	5e-52
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	7e-52
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	4e-51
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	4e-49
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	7e-49
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	1e-48
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-47
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	3e-47
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	7e-47
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	3e-45
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	6e-45
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	1e-44
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-41
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	3e-40
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	3e-38
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	6e-37
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-35
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	1e-35
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	1e-34
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	7e-34
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-32
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	1e-31
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	1e-30
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	1e-30
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	1e-30
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	4e-28
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	6e-28
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	6e-27
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	1e-26
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	7e-25
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	5e-23
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	6e-23
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-20
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	2e-20
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	6e-18
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	1e-17
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	9e-14
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	2e-11
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	6e-11
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-10

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  396 bits (1020), Expect = e-139
 Identities = 138/309 (44%), Positives = 191/309 (61%), Gaps = 10/309 (3%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P VL L    P   A L  +F         + +E+A P    L  H   ++A+ ++    
Sbjct: 1   PDVLQLGPLPPELLAELEARF------TVHRLWEAADP-AALLAEHGGRIRAVVTNGETG 53

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           ++A ++  LP + L+ +   G + ID+   R RG+ + N   V ++DVAD A+GLL+ VL
Sbjct: 54  LSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVL 113

Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           R++ AAD FVR G WP    FPL  K+ GKRVGIVGLG IG  +A+RLEAFG  ++Y+ R
Sbjct: 114 RRIPAADRFVRAGRWP-KGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGR 172

Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
             KP V Y +Y  + ELAA SDVL++ C     T HL+N +VL ALG  GV++NV RG++
Sbjct: 173 RPKPDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSV 232

Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELA 309
           +DE  ++  L  G I GAGLDVFENEP+VP  L  LDNVVL+PH A  T E+ + + +L 
Sbjct: 233 VDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMGDLV 292

Query: 310 VANLEAFFS 318
           +ANLEAFF+
Sbjct: 293 LANLEAFFA 301

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  281 bits (722), Expect = 7e-94
 Identities = 108/296 (36%), Positives = 161/296 (54%), Gaps = 9/296 (3%)

Query: 39  LKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVE 98
           ++ YE  L     L        A+ +     + AE+L  LP ++L+   SAG +++D+  
Sbjct: 25  VERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEA 84

Query: 99  CRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE--FPLGSKL 156
            + RG+ + N     +E VA++A+ L++ + R++   D  VR+G W ++      LG  L
Sbjct: 85  AKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDL 144

Query: 157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVL 213
            GK +GI+GLG IG  VA+RL+ FG  V Y  R+  P         Y D+ EL A SD++
Sbjct: 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDII 204

Query: 214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE 273
            + C LT +T HLIN + L  +    +++N  RG ++DE+ ++  L  G+I GAGLDVFE
Sbjct: 205 SLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFE 264

Query: 274 NEPD-VPEQLFALDN---VVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           NEP      L  LDN   VVL+PH A  T E+ K + ELA+ NLEAFF        
Sbjct: 265 NEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE 320

Length = 324

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  255 bits (655), Expect = 6e-84
 Identities = 118/320 (36%), Positives = 166/320 (51%), Gaps = 23/320 (7%)

Query: 12  PQVLLLRK--PSGFAMLGEQF-FTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGA 68
           P+VL+ R+      A+L E F             +  LP  E L   A     +  +   
Sbjct: 1   PKVLVTRRLPEEALALLREGFEVEVW------DEDRPLPREELLE-AAKGADGLLCTLTD 53

Query: 69  PVTAEILRLLPEVRLVVAT-SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
            + AE+L   P ++ V+A  S G +HIDV   + RG+ + N  +V ++  AD A  LL+ 
Sbjct: 54  KIDAELLDAAPPLK-VIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLA 112

Query: 128 VLRKLSAADCFVRQGLW-PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
             R++   D FVR G W   +    LG+ L GK +GIVG+G IG  VA+R + FG  + Y
Sbjct: 113 AARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILY 172

Query: 187 NSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG-VII 242
           ++R++KP         Y  + EL A SD + + C LT +T HLIN + L AL K   ++I
Sbjct: 173 HNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERL-ALMKPTAILI 231

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPH--SAVFTP 299
           N  RG ++DE  +V  L  G+I GAGLDVFE EP   +  L  L NVVL PH  SA  T 
Sbjct: 232 NTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSA--TV 289

Query: 300 ESFKDVCELAVANLEAFFSN 319
           E+   + ELA  NL A  + 
Sbjct: 290 ETRTAMAELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  244 bits (624), Expect = 2e-79
 Identities = 110/274 (40%), Positives = 158/274 (57%), Gaps = 5/274 (1%)

Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVAL 106
            L + L        A+  S+  PVTAE+L   P+++ +    AG+++ID+   ++RG+ +
Sbjct: 30  LLADELEALLADADALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITV 89

Query: 107 ANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGL 166
            N     +E VA++ALGLL+ +LR+L  AD  VR+G          G +L GK VGIVGL
Sbjct: 90  TNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWG-WLWAGFPGYELEGKTVGIVGL 148

Query: 167 GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQT 223
           G IG  VAKRL+AFG  V Y  R +KP         V    EL A SDV+++   LT +T
Sbjct: 149 GRIGQRVAKRLQAFGMKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPET 208

Query: 224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-L 282
            HLIN++ L  +    V++N  RG ++DE  ++  L  G+I GA LDVFE EP   +  L
Sbjct: 209 RHLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPL 268

Query: 283 FALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
             L NV+L+PH A +T E+ + + E+AV NLE F
Sbjct: 269 LELPNVILTPHIAGYTEEARERMAEIAVENLERF 302

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  242 bits (621), Expect = 8e-79
 Identities = 111/320 (34%), Positives = 161/320 (50%), Gaps = 16/320 (5%)

Query: 12  PQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGA--- 68
           P+VLLL  P       ++  +  +  Y  +      +            AI+ + G+   
Sbjct: 2   PKVLLLGDPIHAHDEWKELSSIAEVIYPTSGTREEFIEALKEGKYGDFVAIYRTFGSAGE 61

Query: 69  --PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
             P   E++  LP  ++++    AG + IDV    +RG+ ++N      E  AD AL L+
Sbjct: 62  TGPFDEELISPLPPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLI 121

Query: 126 IDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
           +  LR  S A+   R G W    +  L     GK +GI+GLG IG  +A++  AFG  + 
Sbjct: 122 LGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKII 181

Query: 186 YNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
           Y++R++ P        TY  Y  + EL A SDV+ + C LT  T HLINK+   A  K G
Sbjct: 182 YHNRSRLPEELEKALATY--YVSLDELLAQSDVVSLNCPLTAATRHLINKK-EFAKMKDG 238

Query: 240 VII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFT 298
           VII N  RGA+IDE  +V  L  G++  AGLDVFENEP+V   L  + NV L PH    T
Sbjct: 239 VIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLT 298

Query: 299 PESFKDVCELAVANLEAFFS 318
            E+ + + EL + N+EAF  
Sbjct: 299 VETQEKMEELVLENIEAFLE 318

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  223 bits (571), Expect = 3e-71
 Identities = 96/270 (35%), Positives = 141/270 (52%), Gaps = 9/270 (3%)

Query: 67  GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
             PVT E+L   P ++ +    AG+++ID+    +RG+ + NA    +  VA+  L LL+
Sbjct: 53  VTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLL 112

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
            + R++  AD   R+G W   A    G++L GK VGI+GLG IG  VAKRL+AFG  V  
Sbjct: 113 ALARRIPDADASQRRGEWDRKAF--RGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG 170

Query: 187 NSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI- 241
                               + EL A +D+L +   LT +T  LIN +  LA  K G I 
Sbjct: 171 YDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE-ELAKMKPGAIL 229

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFTPE 300
           IN  RG ++DE  ++  L  G+I GA LDVFE EP   +  L+ L NV+L+PH    T E
Sbjct: 230 INAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDE 289

Query: 301 SFKDVCELAVANLEAFFSNKPLLTPFAAVD 330
           + + V E+   N+  + +  P++     VD
Sbjct: 290 AQERVAEIVAENIVRYLAGGPVVNNAPEVD 319

Length = 324

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  222 bits (568), Expect = 5e-71
 Identities = 105/300 (35%), Positives = 153/300 (51%), Gaps = 18/300 (6%)

Query: 38  YLKAYESALPLHEFLTLHAHSVKA---------IFSSAGAPVTAEILRLLPEVRLVVATS 88
            L+A     P  E +T      +A         +       + AE+L   P +RL+    
Sbjct: 15  LLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRK-VIDAELLAAAPRLRLIQQPG 73

Query: 89  AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA 148
            GL+ +D+     RG+ +AN     +E VA++A+ L++ +LR+L  AD  +R G W    
Sbjct: 74  VGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRELRAGRWG-RP 132

Query: 149 EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVC 204
           E     +L GK VGIVGLG+IG  VA+RL  FG  V Y  R + P          Y ++ 
Sbjct: 133 EGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEAEEKDLGVRYVELD 192

Query: 205 ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLRGE 263
           EL A SDV+ +   LT +T HLI  + L A+ K G I IN  RG ++DE+ ++  L  G 
Sbjct: 193 ELLAESDVVSLHVPLTPETRHLIGAEELAAM-KPGAILINTARGGLVDEEALLAALRSGH 251

Query: 264 IGGAGLDVFENEPDVPEQ-LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
           + GAGLDVF  EP  P+  L  LDNV+L+PH A  T ES++ +  +   N+      +P 
Sbjct: 252 LAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  215 bits (550), Expect = 4e-68
 Identities = 94/260 (36%), Positives = 139/260 (53%), Gaps = 7/260 (2%)

Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           APVTAE++  LP ++++V    G++++DV     RG+ + N  +  +E+VAD+AL L++ 
Sbjct: 53  APVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILA 112

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           + RKL   D  VR G W      P+  +L G  +G+VG G IG  VAKR +AFG  V   
Sbjct: 113 LARKLPFLDRAVRAGGWDWTVGGPI-RRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAY 171

Query: 188 SRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLLALGKKG-VIIN 243
                  V       V    EL A SDV+ + C LT +T HLI+ + L AL K G  ++N
Sbjct: 172 DPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEAL-ALMKPGAFLVN 230

Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPHSAVFTPESF 302
             RG ++DE  +   L  G I GA LDV E EP   +  L +  NV+L+PH+A ++ ES 
Sbjct: 231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESL 290

Query: 303 KDVCELAVANLEAFFSNKPL 322
            ++   A   +      +P 
Sbjct: 291 AELRRKAAEEVVRVLRGEPP 310

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  213 bits (545), Expect = 2e-67
 Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 10/250 (4%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
           P+T E+L   P ++++     G ++ID+   ++RG+ + N     S  VA+  +GL++ +
Sbjct: 57  PITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLAL 116

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
            R++  AD  VR G W      P+G++L GK +GI+GLG IG  VA+RL  FG  V    
Sbjct: 117 ARQIPQADREVRAGGWDR----PVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYD 172

Query: 189 RNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG-VIINV 244
                         +  + EL   SD + +   LT +T HLIN    LAL K G ++IN 
Sbjct: 173 PYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAE-LALMKPGAILINT 231

Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFALDNVVLSPHSAVFTPESFK 303
            RG ++DE+ +   L  G I GA LDVFE EP      L  L NV+L+PH    T E+  
Sbjct: 232 ARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVL 291

Query: 304 DVCELAVANL 313
            +  +A  N+
Sbjct: 292 RMGTMAAQNV 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  209 bits (533), Expect = 1e-65
 Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 11/275 (4%)

Query: 59  VKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVA 118
             A+ +    PV  EI+     ++++    AG ++IDV   + +G+ + N   V +E  A
Sbjct: 44  YDALITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTA 103

Query: 119 DYALGLLIDVLRKLSAADCFVRQGLWPINAE-FPLGSKLGGKRVGIVGLGSIGSEVAKRL 177
           +   GL++ + R+++  D  +R+G +   A  F LG +L GK +GI+G+G IG  VA+R 
Sbjct: 104 ELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRA 163

Query: 178 EAFGCCVSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ 230
           +AFG  + Y +R++           TY    D+ EL   SD + +    T +THHLI+  
Sbjct: 164 KAFGMKILYYNRHRLSEETEKELGATYV---DLDELLKESDFVSLHAPYTPETHHLIDAA 220

Query: 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL 290
               +     +IN  RG ++DEK +V  L  GEI GA LDVFE EP+V  +L  LDNV+L
Sbjct: 221 AFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVIL 280

Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           +PH    T E+   + + A  N+ +F   K     
Sbjct: 281 TPHIGNATVEARDAMAKEAADNIISFLEGKRPKNI 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  203 bits (518), Expect = 2e-63
 Identities = 100/302 (33%), Positives = 151/302 (50%), Gaps = 26/302 (8%)

Query: 38  YLKAYESALPLHEFLTLHAHSVKAIFSSA----GAPVTAEILRLLPEVRLVVATSAGLNH 93
           +L+   +A P  E   + A  +    + A    G P   E+L   P +R + +TSAG++ 
Sbjct: 13  HLERLRAAAPGAELRVVTAEELTEELADADVLLGNPPLPELLPAAPRLRWIQSTSAGVDA 72

Query: 94  IDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQ---GLWPINAEF 150
           +   E   R V L NA  +F   +A+Y LG ++   RKL     + R      W      
Sbjct: 73  LLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKL---PRYARNQAERRW--QRRG 127

Query: 151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVC------ 204
           P+   L GK V IVGLG IG E+A+R +AFG  V    R+ +P+   P   D        
Sbjct: 128 PVRE-LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPA---PPVVDEVYTPDEL 183

Query: 205 -ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263
            EL   +D ++    LT +T  L N +   A+    V+INVGRG+++DE  ++  L  G 
Sbjct: 184 DELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGR 243

Query: 264 IGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
           I GA LDVFE EP +P    L+ L NV+++PH +  +P   + V E+ + NL  + + +P
Sbjct: 244 IAGAALDVFEEEP-LPADSPLWDLPNVIITPHISGDSPSYPERVVEIFLENLRRYLAGEP 302

Query: 322 LL 323
           LL
Sbjct: 303 LL 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  198 bits (505), Expect = 1e-61
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 9/277 (3%)

Query: 56  AHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSE 115
           A    A+   +  PVTAE+L   P ++++     G+++ID+     RG+ + N     +E
Sbjct: 36  AKDADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTE 95

Query: 116 DVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAK 175
            VA+  +GL++ + R++  AD  VR G W      P+G +L GK +G++G G IG   A 
Sbjct: 96  SVAELTVGLILALARRIPEADASVRAGDW--KKGGPIGLELYGKTLGVIGGGGIGGIGAA 153

Query: 176 RLEAFGCCV----SYNSRNKKPSVTYPFYPDVCEL---AANSDVLIICCALTDQTHHLIN 228
             +A G  V     Y +  +              L     + D++ +    T +T H+I 
Sbjct: 154 IAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIII 213

Query: 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV 288
            +    L     I N   G +I+E  +   L  G    A   V E  P V   L  L NV
Sbjct: 214 NEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNV 273

Query: 289 VLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           +L+PH A  T E+ +++ E A  NL AF         
Sbjct: 274 ILTPHIAGATEEAQENMAEEAAENLLAFLKGGTPPNA 310

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  197 bits (502), Expect = 6e-61
 Identities = 112/315 (35%), Positives = 163/315 (51%), Gaps = 16/315 (5%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P+V + R+   +G  ML E+ F    ++     +      E L      V A+ +     
Sbjct: 3   PKVFITREIPENGIEML-EEHFEVEVWE-----DEREIPREVLLEKVRDVDALVTMLSER 56

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +  E+    P +R+V   + G ++IDV E  RRG+ + N   V +E  AD+A  LL+   
Sbjct: 57  IDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATA 116

Query: 130 RKLSAADCFVRQGLWPIN--AEFP---LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+L  AD FVR G W     A  P   LG  + GK +GI+G G IG  VA+R + FG  +
Sbjct: 117 RRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRI 176

Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
            Y SR +KP         Y  + EL   SD + +   LT +T+H+IN++ L  +    ++
Sbjct: 177 LYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAIL 236

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           +N  RG ++D K +V  L  G I GAGLDVFE EP   E+LF+L NVVL+PH    T E+
Sbjct: 237 VNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEA 296

Query: 302 FKDVCELAVANLEAF 316
            + + EL   NL AF
Sbjct: 297 REGMAELVAENLIAF 311

Length = 333

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  192 bits (491), Expect = 2e-59
 Identities = 92/268 (34%), Positives = 134/268 (50%), Gaps = 32/268 (11%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           VTAE++   P ++++     G+++IDV     RG+ + NA   N  S  VA++ + L++ 
Sbjct: 52  VTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTIS--VAEHTIALMLA 109

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           + R +  AD  +R G W     F  G +L GK +GIVGLG IG EVA+R  AFG  V   
Sbjct: 110 LARNIPQADASLRAGKWDRKK-FM-GVELRGKTLGIVGLGRIGREVARRARAFGMKV--- 164

Query: 188 SRNKKPSVTY-PFYP------------DVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
                  + Y P+               + EL A +D + +   LT +T  LIN +  LA
Sbjct: 165 -------LAYDPYISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAE-ELA 216

Query: 235 LGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSP 292
             K G  +IN  RG I+DE  +   L  G+I GA LDVFE EP   +  L  L NV+L+P
Sbjct: 217 KMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTP 276

Query: 293 HSAVFTPESFKDVCELAVANLEAFFSNK 320
           H    T E+ + V   A   + A  + +
Sbjct: 277 HLGASTEEAQERVAVDAAEQVLAVLAGE 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  187 bits (477), Expect = 2e-57
 Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 15/270 (5%)

Query: 66  AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN-AGNVFSEDVADYALGL 124
            G     E L  L  ++L+   SAG++H+ + E    GV +AN  GN  S  VA++AL L
Sbjct: 46  GGRLTKEEALAALKRLKLIQVPSAGVDHLPL-ERLPEGVVVANNHGN--SPAVAEHALAL 102

Query: 125 LIDVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
           ++ + +++   D  +R+G+W     E P   +L GK VGI+G G IG E+A+ L+AFG  
Sbjct: 103 ILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMR 162

Query: 184 VSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
           V   SR+ K      F     D+ E    +DV+++   LT QT  LI    L A+    +
Sbjct: 163 VIGVSRSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAI 222

Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-------LFALDNVVLSPH 293
           ++NVGRG ++DE+ +   L    I GA +DV+   P   +           L NV++SPH
Sbjct: 223 LVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPH 282

Query: 294 SAVFTPESFKDVCELAVANLEAFFSNKPLL 323
           +A +T E+F+   + A  N+  +   +PLL
Sbjct: 283 NAGWTEETFRRRIDEAAENIRRYLRGEPLL 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  181 bits (462), Expect = 9e-57
 Identities = 74/177 (41%), Positives = 99/177 (55%), Gaps = 5/177 (2%)

Query: 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
           L LL+ + R++  AD  VR G W    +  LG +L GK VGI+GLG IG  VA+RL+AFG
Sbjct: 1   LALLLALARRIPEADRQVRAGRW--RPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFG 58

Query: 182 CCVSYNSR--NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
             V    R    +       Y  + EL A SDV+ +   LT +T HLIN + L  +    
Sbjct: 59  MKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPHSA 295
           ++IN  RG ++DE  ++  L  G I GA LDVFE EP  P+  L  L NV+L+PH A
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  184 bits (470), Expect = 3e-56
 Identities = 87/269 (32%), Positives = 131/269 (48%), Gaps = 32/269 (11%)

Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           APVT +++   P+++L+     G  ++DV     RG+ + N     +E VA++ +GL++ 
Sbjct: 55  APVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLA 114

Query: 128 VLRKLSAADCFVRQGLW---PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
             R ++ A   ++ G W     N +   G +L GK VGIVG G+IG  VAKRL+AFG  V
Sbjct: 115 ETRNIARAHAALKDGEWRKDYYNYDG-YGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEV 173

Query: 185 SYNSRNKKPSVTY-PFYP------------DVCELAANSDVLIICCALTDQTHHLINKQV 231
                       Y P+               + EL   SDV+ +   LT +T  +I  + 
Sbjct: 174 LV----------YDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAE- 222

Query: 232 LLALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNV 288
             AL K     IN  R  ++DE  ++  L  G+IGGA LDVF  EP +P    L  LDNV
Sbjct: 223 EFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNV 281

Query: 289 VLSPHSAVFTPESFKDVCELAVANLEAFF 317
            L+PH A  T +  +   E+    L+ + 
Sbjct: 282 TLTPHIAGATRDVAERSPEIIAEELKRYL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  183 bits (466), Expect = 9e-56
 Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 7/253 (2%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            VT E++     ++++     GL++IDV   +++G+ + N     S  VA+  +GL++ +
Sbjct: 52  KVTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSL 111

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
            R +  A+  ++ G W  N +   G +L GK +GI+G G IG EVAK   A G  V    
Sbjct: 112 ARFIHRANREMKLGKW--NKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYD 169

Query: 189 RNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINV 244
              K               EL  NSD + +   LT +T H+INK+ L  L K G  IIN 
Sbjct: 170 PYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKEL-ELMKDGAIIINT 228

Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKD 304
            RG +IDE+ ++  L  G++ GA LDVFENEP    +L  L NV L+PH    T E+ + 
Sbjct: 229 SRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQER 288

Query: 305 VCELAVANLEAFF 317
           + E     +  F 
Sbjct: 289 IGEELANKIIEFL 301

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  183 bits (466), Expect = 9e-56
 Identities = 87/258 (33%), Positives = 140/258 (54%), Gaps = 15/258 (5%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            + AE+L  LP ++L+   + G N++D+   + RG+ + N     ++ VA +   LL+ +
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLAL 113

Query: 129 LRKLSAADCFVRQGLWPINAEF-----PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
            R ++  +  V+ G W  + +F     P+   L GK +GI+G G+IG  VA+   AFG  
Sbjct: 114 ARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAFGMK 172

Query: 184 VSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI-I 242
           V +  R   P +    Y  + EL A SDV+ + C LT +T +LIN + L A  K G I I
Sbjct: 173 VLFAERKGAPPLREG-YVSLDELLAQSDVISLHCPLTPETRNLINAEEL-AKMKPGAILI 230

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ----LFALDNVVLSPHSAVFT 298
           N  RG ++DE+ +   L  G+I GAGLDV   EP  P      L A  N++++PH A  +
Sbjct: 231 NTARGGLVDEQALADALNSGKIAGAGLDVLSQEP--PRADNPLLKAAPNLIITPHIAWAS 288

Query: 299 PESFKDVCELAVANLEAF 316
            E+ + + ++ V N++AF
Sbjct: 289 REARQRLMDILVDNIKAF 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  183 bits (466), Expect = 1e-55
 Identities = 94/266 (35%), Positives = 146/266 (54%), Gaps = 19/266 (7%)

Query: 66  AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
           A  P+  E++     ++++     G++H+D+  C+ RG+ ++NA    +E VA+  +GL 
Sbjct: 55  ANMPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLA 114

Query: 126 IDVLRKLSAADCFVR-----QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF 180
           ID+LR +   D  VR      GL        +G +L GK VGIVG G+IG  VA+  +AF
Sbjct: 115 IDLLRNIVPCDAAVRAGGTKAGL--------IGRELAGKTVGIVGTGAIGLRVARLFKAF 166

Query: 181 GCCVSYNSRNKKPSVTYPF--YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238
           GC V   SR++K         Y  + EL A SD++ +   L D+T  LI K+  LAL K+
Sbjct: 167 GCKVLAYSRSEKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKE-KLALMKE 225

Query: 239 G-VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSA 295
             ++IN  RG ++D + +   L  G+I GAG+DVF+ EP +P    L    N +L+PH A
Sbjct: 226 SAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVA 285

Query: 296 VFTPESFKDVCELAVANLEAFFSNKP 321
             T E+ +   E+   N+EA+ + KP
Sbjct: 286 FATEEAMEKRAEIVFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  177 bits (451), Expect = 3e-53
 Identities = 80/273 (29%), Positives = 126/273 (46%), Gaps = 6/273 (2%)

Query: 56  AHSVKAIFSSAGAP-VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFS 114
              V+ + +  G P + AE+L   P +R VV  +  +  +       RG+ + +A +  +
Sbjct: 47  LAGVEVLVTGWGTPPLDAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANA 106

Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVA 174
           E VA++ L  ++  LR++       R G          G  L G+ VGIVG G IG  V 
Sbjct: 107 EPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVV 166

Query: 175 KRLEAFGCCVSYNSRNKKPS-VTYPFYPDVC--ELAANSDVLIICCALTDQTHHLINKQV 231
           + L  FG  V         +         V   EL A SDV+ +   LT +T  +I+ ++
Sbjct: 167 ELLRPFGLRVLVYDPYLPAAEAAALGVELVSLDELLARSDVVSLHAPLTPETRGMIDARL 226

Query: 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFALDNVVL 290
           L  +      IN  RGA++DE  ++  L  G +  A LDV + EP      L  L NV+L
Sbjct: 227 LALMRDGATFINTARGALVDEAALLAELRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLL 285

Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
           +PH A  T +  + + + A+  LE F + +PLL
Sbjct: 286 TPHIAGSTGDERRRLGDYALDELERFLAGEPLL 318

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  174 bits (442), Expect = 5e-52
 Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 9/270 (3%)

Query: 59  VKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN-AGNVFSEDV 117
              I +S       E       ++L+     G +++D+      GV +    G V  + V
Sbjct: 48  YDIIIASVTPNFDKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAV 107

Query: 118 ADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRL 177
           A++A+ L++ VLRK++ A   V++G W   A F +G +L GK VGI+G G+IGS VA+ L
Sbjct: 108 AEHAVALILTVLRKINQASEAVKEGKWTERANF-VGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 178 -EAFGCCVSYNSRNKKPSV---TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233
            E F   V          V          + EL A SD++ +   LT++T+H+IN++   
Sbjct: 167 KEGFNAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEK-AF 225

Query: 234 ALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLS 291
           +  KKGVI+ N  RG +IDE+ ++  L  G+I GAGLDV E EP   +  L   +NVV++
Sbjct: 226 SKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVIT 285

Query: 292 PHSAVFTPESFKDVCELAVANLEAFFSNKP 321
           PH   +T ES   + E  V ++E F + K 
Sbjct: 286 PHIGAYTYESLYGMGEKVVDDIEDFLAGKE 315

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  172 bits (439), Expect = 7e-52
 Identities = 83/266 (31%), Positives = 126/266 (47%), Gaps = 12/266 (4%)

Query: 66  AGAPVTAEILRLLPEVRLVVATSAGLNH-IDVVECRRRGVALANAGNVFSEDVADYALGL 124
            G+    E L   P VR V    AG+   ++       G    NA   ++E VA++AL L
Sbjct: 35  TGSAREPERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVAEHALAL 94

Query: 125 LIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           L+  LR+L       R   W    E  L + L G  V IVG G IG  +   L  FG  V
Sbjct: 95  LLAGLRQLP---ARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKV 151

Query: 185 SYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
              +R+ +P      T P    + E+  ++D +++   LT +T HL++   L A+     
Sbjct: 152 IAVNRSGRPVEGADETVPAD-RLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAW 210

Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE--QLFALDNVVLSPHSAVFT 298
           ++NV RG ++D   +V  L  GEI GA LDV + EP +P+   L++L N +++PH A   
Sbjct: 211 LVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEP-LPDGHPLWSLPNALITPHVANTP 269

Query: 299 PESFKDVCELAVANLEAFFSNKPLLT 324
                 + E    N+ AF + +PLL 
Sbjct: 270 EVIRPLLAERVAENVRAFAAGEPLLG 295

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  171 bits (436), Expect = 4e-51
 Identities = 80/271 (29%), Positives = 137/271 (50%), Gaps = 32/271 (11%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            + AE+L   P ++ +   + G ++ID+   +  G+ + N        VA++ + L++ +
Sbjct: 56  KIDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILAL 115

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYN 187
           LR     D   R     +     +G +L  + VG+VG G IG  VA+R + FG  V +Y+
Sbjct: 116 LRNRKYID--ERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYD 173

Query: 188 -SRNKKPSVTYPFYPDVC------ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
             RN +                  EL  NSD++ +   LT + HH+IN++    L KKGV
Sbjct: 174 PFRNPE------LEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAF-KLMKKGV 226

Query: 241 I-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE-PDVPEQ-------------LFAL 285
           I IN  RG+++D + ++  L  G+I GAGLDV E+E PD+ +              L   
Sbjct: 227 IIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRR 286

Query: 286 DNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
            NV+++PH+A +T ++ K++ E++  N+  F
Sbjct: 287 PNVIITPHTAFYTDDALKNMVEISCENIVDF 317

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  166 bits (422), Expect = 4e-49
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 15/242 (6%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           + A+ L   P ++++     G ++ DV  C  RG+ +    ++ +E  A+  +GLLI + 
Sbjct: 56  IDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLG 115

Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           R + A D FVR G +        G+ L GK VGI+G+G++G  +A+RL  FG  + Y   
Sbjct: 116 RHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDP 175

Query: 190 NKKPSVTYPF----YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
           +               ++ EL  +SD L++   LT  T HLIN + L  +    +++N  
Sbjct: 176 HPLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPC 235

Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEP--------DVPEQLFAL-DNVVLSPH--S 294
           RG+++DE  +   L  G +GG   DVFE E          +P++L    D  V +PH  S
Sbjct: 236 RGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGS 295

Query: 295 AV 296
           AV
Sbjct: 296 AV 297

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  170 bits (434), Expect = 7e-49
 Identities = 88/241 (36%), Positives = 126/241 (52%), Gaps = 31/241 (12%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
            VTAE+L     ++++     G++++DV    RRG+ + NA  GN  S   A++ + L++
Sbjct: 53  KVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTIS--AAEHTIALML 110

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
            + R +  A   ++ G W     F +G +L GK +GI+GLG IGSEVAKR +AFG  V  
Sbjct: 111 ALARNIPQAHASLKAGKWERKK-F-MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKV-- 166

Query: 187 NSRNKKPSVTY-PFYP------------DVCELAANSDVLIICCALTDQTHHLINKQVLL 233
                   + Y P+               + EL A +D + +   LT +T  LI  +  L
Sbjct: 167 --------IAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAE-EL 217

Query: 234 ALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSP 292
           A  K GV IIN  RG IIDE  +   L  G++ GA LDVFE EP     LF L NVV++P
Sbjct: 218 AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTP 277

Query: 293 H 293
           H
Sbjct: 278 H 278

Length = 526

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  164 bits (419), Expect = 1e-48
 Identities = 83/258 (32%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
           P  A +L  LP ++L+V T      ID+   + RG+ +   G       A+    L++ +
Sbjct: 58  PFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILAL 116

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
            R L   D  +R G W       LG+ L GK +GIVGLG IG+ VA+  +AFG  V   S
Sbjct: 117 ARNLPEEDAALRAGGWQTT----LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWS 172

Query: 189 RNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
            N          V         EL A SDV+ +   L+D+T  L+  + L  +    +++
Sbjct: 173 SNLTAERAAAAGVEAA--VSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLV 230

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFALDNVVLSPHSAVFTPES 301
           N  RG ++DE  ++  L  G I GA LDVF+ EP      L  L NV+L+PH    T E+
Sbjct: 231 NTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEA 290

Query: 302 FKDVCELAVANLEAFFSN 319
           ++     AV N+ A+ + 
Sbjct: 291 YEGFYGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  167 bits (424), Expect = 2e-47
 Identities = 93/252 (36%), Positives = 138/252 (54%), Gaps = 12/252 (4%)

Query: 61  AIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVA 118
           A+   +   VT E++   P+++++     G+++ID+     RG+ + NA  GN  S   A
Sbjct: 43  ALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTIS--AA 100

Query: 119 DYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE 178
           ++AL +L+   R +  AD  +++G W   A F +G++L GK +G++GLG IGS VAKR +
Sbjct: 101 EHALAMLLAAARNIPQADASLKEGEWDRKA-F-MGTELYGKTLGVIGLGRIGSIVAKRAK 158

Query: 179 AFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
           AFG  V     Y S  +   +      D+ EL A +D + +   LT +T  LI  + L A
Sbjct: 159 AFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEEL-A 217

Query: 235 LGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH 293
             KKGVII N  RG IIDE  +   L  G +  A LDVFE EP     LF LDNV+ +PH
Sbjct: 218 KMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPH 277

Query: 294 SAVFTPESFKDV 305
               T E+ ++V
Sbjct: 278 LGASTREAQENV 289

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  162 bits (411), Expect = 3e-47
 Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 40/283 (14%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           + AE+L  LP ++L+   S G +HID+  CR RG+A+ N  +     VA++A  LL+ + 
Sbjct: 53  LDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALS 112

Query: 130 RKLSAA------DCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
           RKL  A        F + GL         G +L GK +G+VG G IG  VA+    FG  
Sbjct: 113 RKLREAIERTRRGDFSQAGL--------RGFELAGKTLGVVGTGRIGRRVARIARGFGMK 164

Query: 184 VSYNSRNKKPSV--TYPF-YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
           V          +     F Y  + EL   SD++ +    T QTHHLIN++   AL K G 
Sbjct: 165 VLAYDVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENF-ALMKPGA 223

Query: 241 I-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE------------------- 280
           + IN  RGA++D + +V  L  G++ GAGLDV E E  + E                   
Sbjct: 224 VLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLA 283

Query: 281 --QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
              L    NV+++PH A  T E+ + + +  V N++AF + +P
Sbjct: 284 DHALLRKPNVIITPHVAYNTKEALERILDTTVENIKAFAAGQP 326

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  160 bits (407), Expect = 7e-47
 Identities = 73/246 (29%), Positives = 135/246 (54%), Gaps = 13/246 (5%)

Query: 86  ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
             SAG++++ +   +++G+ L N   + S  +A++ +G ++++ + L  A    ++  W 
Sbjct: 66  LYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKKWK 125

Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP----SVTYPFYP 201
           +++      +L GK +  +G GSIG E+AKRL+AFG  V   + + +        YP   
Sbjct: 126 MDSS---LLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFDKCYPL-E 181

Query: 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR 261
           ++ E+   +D+++    LT++THHL ++     + K  + INVGRG  +DE  ++  L  
Sbjct: 182 ELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKN 241

Query: 262 GEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFS 318
            +I GA LDVFE EP   D P  L+ LDNV+++PH +  +    + + ++   NL++F  
Sbjct: 242 KQIRGAALDVFEEEPLPKDSP--LWDLDNVLITPHISGVSEHFNERLFDIFYENLKSFLE 299

Query: 319 NKPLLT 324
           +  LL 
Sbjct: 300 DGELLK 305

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  156 bits (398), Expect = 3e-45
 Identities = 99/281 (35%), Positives = 145/281 (51%), Gaps = 40/281 (14%)

Query: 70  VTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           + A +L  L E  V+L+    AG N++D+   +  G+ +          VA++A+ LL+ 
Sbjct: 56  LDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLA 115

Query: 128 VLRKLSAADCFVRQ------GLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
           + RK+  A   VR+      GL        LG  L GK VG++G G IG   A+ L+ FG
Sbjct: 116 LNRKIHRAYNRVREGNFSLDGL--------LGFDLHGKTVGVIGTGKIGQAFARILKGFG 167

Query: 182 CCV-SY----NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236
           C V +Y    N    K  V Y    D+ EL A SD++ + C LT +THHLIN +  +A  
Sbjct: 168 CRVLAYDPYPNPELAKLGVEYV---DLDELLAESDIISLHCPLTPETHHLINAET-IAKM 223

Query: 237 KKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP--------------DVPEQ 281
           K GV +IN  RG +ID K ++  L  G+IGG GLDV+E E               DV  +
Sbjct: 224 KDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLAR 283

Query: 282 LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
           L +  NV+++ H A FT E+  ++ E  + NL+ F + KPL
Sbjct: 284 LLSFPNVLITGHQAFFTKEALTNIAETTLENLDDFEAGKPL 324

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  155 bits (394), Expect = 6e-45
 Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 36/291 (12%)

Query: 56  AHSVKAIFSSAGAPVTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVF 113
           A     I     + ++AE+L  L E  V+ +   S G +HID+   +  G+ ++N     
Sbjct: 42  AEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNV-TYS 100

Query: 114 SEDVADYALGLLIDVLRKLSAA-------DCFVRQGLWPINAEFPLGSKLGGKRVGIVGL 166
              VADY + L++  LRK           D +   GL         G +L    VG++G 
Sbjct: 101 PNSVADYTVMLMLMALRKYKQIMKRAEVND-YSLGGL--------QGRELRNLTVGVIGT 151

Query: 167 GSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHH 225
           G IG  V K L  FGC  ++Y+    +    Y  Y D+  L   SD++ +   LT++T+H
Sbjct: 152 GRIGQAVIKNLSGFGCKILAYDPYPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYH 211

Query: 226 LINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV------ 278
           LINK+ + A  K GV IIN  RG +ID + ++  L  G+IGGA LDV E E  +      
Sbjct: 212 LINKESI-AKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRK 270

Query: 279 ------PE--QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
                  E   L +  NV+L+PH A +T ++  D+ E ++ +L AF     
Sbjct: 271 GDILSNRELAILRSFPNVILTPHMAFYTDQAVSDMVENSIESLVAFEKGGE 321

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  154 bits (391), Expect = 1e-44
 Identities = 85/265 (32%), Positives = 141/265 (53%), Gaps = 21/265 (7%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +  E+L  LP ++L+  T+ G N++D+   +++G+A+ N     +E VA +   +L+ +L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLL 112

Query: 130 RKLSAADCFVRQGLW---PI--NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
            +++  D +V+ G +   PI  +   PLG ++ GK+ GI+GLG+IG  VAK  +AFG  V
Sbjct: 113 GRINYYDRYVKSGEYSESPIFTHISRPLG-EIKGKKWGIIGLGTIGKRVAKIAQAFGAKV 171

Query: 185 SYNS---RNKKPSVTYPFYPDVC--ELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
            Y S   +NK        Y  V   EL   SD++ I   L ++T +LI  + L  L    
Sbjct: 172 VYYSTSGKNKNEE-----YERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGA 226

Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLF----ALDNVVLSPHSA 295
           ++INVGRG I++EK++   L   +I  AGLDV E EP             + ++++PH A
Sbjct: 227 ILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIA 285

Query: 296 VFTPESFKDVCELAVANLEAFFSNK 320
             + E+ K + E    N++ F    
Sbjct: 286 WASKEARKTLIEKVKENIKDFLEGG 310

Length = 311

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  146 bits (371), Expect = 1e-41
 Identities = 86/262 (32%), Positives = 127/262 (48%), Gaps = 8/262 (3%)

Query: 66  AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
           +G  V A +L  +P++R     S G ++ DV     R + L +   V +E VAD  + L+
Sbjct: 52  SGEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALV 111

Query: 126 IDVLRKLSAADCFVRQGLW--PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGC 182
           +   R++      V+ G W   I  ++  G+ +  K +GIVG+G IG  +A+R    F  
Sbjct: 112 LSTARRVVEVAERVKAGEWTASIGPDW-FGTDVHHKTLGIVGMGRIGMALAQRAHFGFNM 170

Query: 183 CVSYNSRNKKPSVTYPFYPDVCEL---AANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
            + YN+R         F    C+L      SD + I   LTD+THHL   +    +    
Sbjct: 171 PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSA 230

Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFALDNVVLSPHSAVFT 298
           + IN GRG ++DE  ++  L +GEI  AGLDVFE EP  V   L +L NVV  PH    T
Sbjct: 231 IFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSAT 290

Query: 299 PESFKDVCELAVANLEAFFSNK 320
            E+  ++   AV NL      K
Sbjct: 291 HETRYNMAACAVDNLIDALQGK 312

Length = 323

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  142 bits (361), Expect = 3e-40
 Identities = 83/252 (32%), Positives = 130/252 (51%), Gaps = 12/252 (4%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
           P+  E +     ++ +    AGL +ID+   + +G+ L NA     + V ++ALG+L+ +
Sbjct: 51  PIDKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLAL 110

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
             KL+ AD  VR G+W  + E   G +L GK VGI+G G++G   AKRL  FGC V    
Sbjct: 111 FNKLNRADQEVRNGIW--DREGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYD 168

Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
           + K     Y     +  L   +D+L +   LT +T  ++NK+ + +  K    IN  RG 
Sbjct: 169 KYKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENE----------PDVPEQLFALDNVVLSPHSAVFT 298
           ++  K++V  L  G+I GA LDV E E          P+  E L     V+L+PH A +T
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWT 288

Query: 299 PESFKDVCELAV 310
            ES++ + E+ V
Sbjct: 289 FESYEKIAEVLV 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  137 bits (348), Expect = 3e-38
 Identities = 81/262 (30%), Positives = 129/262 (49%), Gaps = 9/262 (3%)

Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
             + A  L   P+++L++  + G N++D+   R RG+ + N     +  VA + L LL+ 
Sbjct: 54  VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLA 113

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGS----KLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
           +  +L      V  G W  +++F L      +L GK +G++G G +G  VA+  EAFG  
Sbjct: 114 LATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMR 173

Query: 184 VSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN 243
           V       +P    P    + EL    D L + C LT+ T HLI  + L  +    ++IN
Sbjct: 174 VLIGQLPGRP--ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLIN 231

Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALD--NVVLSPHSAVFTPE 300
             RG ++DE+ +   L  G +GGA  DV   EP V    L A D   ++++PHSA  + E
Sbjct: 232 TARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE 291

Query: 301 SFKDVCELAVANLEAFFSNKPL 322
           + + +      N  AFF+ KPL
Sbjct: 292 ARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  134 bits (339), Expect = 6e-37
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 28/265 (10%)

Query: 73  EILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLIDVLR 130
             +   P ++ +    AG+N+IDV    +RG+ + N    N  +  VA+  + +++ + R
Sbjct: 43  HDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGAN--ANAVAELVIAMMLALSR 100

Query: 131 KLSAADCFV--------RQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182
            +  A  +V         +G+     +F  G++L GK +G++GLG+IG  VA    A G 
Sbjct: 101 NIIQAIKWVTNGDGDDISKGVEKGKKQFV-GTELRGKTLGVIGLGNIGRLVANAALALGM 159

Query: 183 ----CVSYNSRN--KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236
                  Y S     K SV       + EL A +D + +   LTD+T  LIN + LLA  
Sbjct: 160 KVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAE-LLAKM 218

Query: 237 KKGVI-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
           K G I +N  RG I+DE+ ++  L  G++GG  +  F      P  L  L NV+ +PH  
Sbjct: 219 KPGAILLNFARGEIVDEEALLEALDEGKLGGY-VTDFPE----PALLGHLPNVIATPHLG 273

Query: 296 VFTPESFKDVCELAVAN-LEAFFSN 319
             T E+ ++ C +  A  +  F   
Sbjct: 274 ASTEEA-EENCAVMAARQIMDFLET 297

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  130 bits (329), Expect = 1e-35
 Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 8/258 (3%)

Query: 67  GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
            AP   E LR LP +R+V   SAG +   V+     GV L NA  V     A+ A+ L++
Sbjct: 47  AAPPVLEALRALPRLRVVQTLSAGYDG--VLPLLPEGVTLCNARGVHDASTAELAVALIL 104

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
             LR L        +G W    E      L  +RV IVG GSIG  + +RL  F   V+ 
Sbjct: 105 ASLRGLPRFVRAQARGRW----EPRRTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTR 160

Query: 187 NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR 246
            +R  +P        ++  L   +DV+++   LTD+T  L++ + L  +    +++NV R
Sbjct: 161 VARTARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVAR 220

Query: 247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPHSAVFTPESFKDV 305
           G ++D   +V  L  G +  A LDV + EP  P   L++   V+++PH    TP      
Sbjct: 221 GPVVDTDALVAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRA 279

Query: 306 CELAVANLEAFFSNKPLL 323
             L    L  + + +PL 
Sbjct: 280 YALVRRQLRRYAAGEPLE 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  131 bits (331), Expect = 1e-35
 Identities = 76/275 (27%), Positives = 133/275 (48%), Gaps = 25/275 (9%)

Query: 68  APVTAEILRLLPEVRL-VVAT-SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
            P   E+   L E  +  +A  SAG++ ID+   +  G+ + N        +A++A+   
Sbjct: 54  LPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQA 113

Query: 126 IDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV- 184
           +++LR     D  V +G +       +G ++    VGI+G G IGS  AK  + FG  V 
Sbjct: 114 LNLLRNTPEIDRRVAKGDFRWAPGL-IGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVI 172

Query: 185 SYN-SRNK--KPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
           +Y+   N   +  + Y  Y  + +L   +D++ +   LT + HHLIN +   A  K G I
Sbjct: 173 AYDPYPNPELEKFLLY--YDSLEDLLKQADIISLHVPLTKENHHLINAEAF-AKMKDGAI 229

Query: 242 -INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--------------PDVPEQLFALD 286
            +N  RG ++D K ++  L  G+I GA LD +ENE               +V ++L A+ 
Sbjct: 230 LVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKELIAMP 289

Query: 287 NVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
           NV+++PH A +T  + K++ E+++ +         
Sbjct: 290 NVLITPHIAFYTDTAVKNMVEISLDDALEIIEGGT 324

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  128 bits (325), Expect = 1e-34
 Identities = 78/234 (33%), Positives = 113/234 (48%), Gaps = 32/234 (13%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            V   +L     V+ V   + G +HID    + RG+  ANA    +  VA+Y L  L   
Sbjct: 47  KVNEALLEGSK-VKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSAL--- 102

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
                      RQG             L GK VGIVG+G++GS +A+RLEA G  V    
Sbjct: 103 ------LVLAQRQGF-----------SLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCD 145

Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICC--ALTDQ----THHLINKQVLLALGKKGVII 242
             +  +   P +  + EL A +D  II     LT      T+HL+++  L AL    ++I
Sbjct: 146 PPRAEAEGDPGFVSLEELLAEAD--IITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILI 203

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL-SPHSA 295
           N  RGA+ID + ++  L RG+     LDV+ENEP++  +L  LD V + +PH A
Sbjct: 204 NASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLEL--LDKVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  125 bits (317), Expect = 7e-34
 Identities = 84/238 (35%), Positives = 124/238 (52%), Gaps = 33/238 (13%)

Query: 96  VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF----P 151
           VV C R GVA        +E +A++ L  +      L+AA       +W   AE     P
Sbjct: 87  VVTCAR-GVA--------AEAIAEFVLAAI------LAAAKRL--PEIWVKGAEQWRREP 129

Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELA 207
           LGS L G  +GIVG G+IG  +A+R  A G  V    R+ +PS    V      D+ EL 
Sbjct: 130 LGS-LAGSTLGIVGFGAIGQALARRALALGMRVLALRRSGRPSDVPGVEA--AADLAELF 186

Query: 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGG 266
           A SD L++   LT +T HLIN  V LA  K G+ +IN+ RG ++D++ ++  L  G I  
Sbjct: 187 ARSDHLVLAAPLTPETRHLINADV-LAQAKPGLHLINIARGGLVDQEALLEALDSGRISL 245

Query: 267 AGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
           A LDV + EP +PE   L+    V LSPH++   P+  +++ +  + NL  + + +PL
Sbjct: 246 ASLDVTDPEP-LPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPL 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  122 bits (308), Expect = 2e-32
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 35/284 (12%)

Query: 75  LRLLPEVRLVVATSAGLNHI---DVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK 131
              +P +RLV   SAG +H     +   +   V L  A  +    +A++ +G  + +   
Sbjct: 49  AEDVPNLRLVQLFSAGADHWLGHPLY--KDPEVPLCTASGIHGPQIAEWVIGTWLVLSHH 106

Query: 132 LSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRN 190
                   ++  W    E        GKRVGI+G GSIG + A+  +A G  V +Y    
Sbjct: 107 FLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSP 166

Query: 191 KK-----------------PSVTYP--FY-----PDVCE-LAANSDVLIICCALTDQTHH 225
           +                  P  + P  ++       + E L  + D+L++   LT  T H
Sbjct: 167 RPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPLTPATKH 226

Query: 226 LINKQVLLALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--L 282
           L+  +    L K+   + N+ RG+++D   +V  L  G+I GA LDV + EP +P    L
Sbjct: 227 LLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEP-LPADHPL 285

Query: 283 FALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326
           ++  NV+++PH +  T E F    ++   NLE     +PL+   
Sbjct: 286 WSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPLINLV 329

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  120 bits (303), Expect = 1e-31
 Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 28/258 (10%)

Query: 72  AEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN-----AGNVFSEDVADYALGLLI 126
           A+I+    +++L++    GL  +DV    + G+ +A       GN  S   A+ A+ L++
Sbjct: 74  ADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAAS--CAEMAIYLML 131

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
            +LRK +     ++          P+G  L GK V I+G G+IG E+AKRL  FG  +  
Sbjct: 132 GLLRKQNEMQISLKARRLGE----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA 187

Query: 187 NSRN--KKPSVTYPFYP--------------DVCELAANSDVLIICCALTDQTHHLINKQ 230
             R+   +P                      D+ E A  +D++++CC LT +T  ++N +
Sbjct: 188 TRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE 247

Query: 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVV 289
            L ++ K  +++N+ RG ++D   ++  L  G +GG  +DV  +EP  P+  +    NV+
Sbjct: 248 FLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVI 307

Query: 290 LSPHSAVFTPESFKDVCE 307
           ++PH A  T  S++ + +
Sbjct: 308 ITPHVAGVTEYSYRSMGK 325

Length = 347

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  117 bits (295), Expect = 1e-30
 Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 18/262 (6%)

Query: 71  TAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR 130
           T E L  LP+++L+  T+ G N++D+V  +  G+A+ N     S  V ++ LG++  +  
Sbjct: 56  TRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115

Query: 131 KLSAADCFVRQGL---WPINAEF-----PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182
            L     + R  L   W    +F     P+ + + G  +G+ G G +G+EV +  +A G 
Sbjct: 116 SLMG---WYRDQLSDRWATCKQFCYFDYPI-TDVRGSTLGVFGKGCLGTEVGRLAQALGM 171

Query: 183 CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
            V Y + +K  SV    Y    E+   +D++ + C LT+ T +LIN + L  +     +I
Sbjct: 172 KVLY-AEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLI 230

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFA--LDNVVLSPHSAVF 297
           N GRG ++DE+ ++  L  G+I GA LDV   EP   D P    A  L N++++PH A  
Sbjct: 231 NTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWA 290

Query: 298 TPESFKDVCELAVANLEAFFSN 319
           +  +   +      N+E F   
Sbjct: 291 SDSAVTTLVNKVAQNIEEFVQQ 312

Length = 314

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score =  117 bits (294), Expect = 1e-30
 Identities = 76/242 (31%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 82  RLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQ 141
           +++ + SAG++HIDV       V  +NAG  +S  VA++A  LL+   + +   +  ++ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPENVVLCSNAG-AYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 142 GLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYP 201
           G +   +   L   L  K +GI+G G IG  VA   +AFG  +   +R+         Y 
Sbjct: 110 GNF-KQSPTKL---LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYM 165

Query: 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLL 260
           +  ++   SD ++I   LTD+T  +IN + +L+L +KG+ IINV R  ++D+ +M+  L 
Sbjct: 166 EPEDIMKKSDFVLISLPLTDETRGMINSK-MLSLFRKGLAIINVARADVVDKNDMLNFLR 224

Query: 261 RGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH-SAVFTPESFKDVCELAVANLEAFFSN 319
                    DV+ NEP + E     DNV+LSPH +   + E  +    LA  N++ FF  
Sbjct: 225 NHNDKYYLSDVWWNEPIITETN--PDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEG 282

Query: 320 KP 321
           KP
Sbjct: 283 KP 284

Length = 303

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  117 bits (295), Expect = 1e-30
 Identities = 89/272 (32%), Positives = 124/272 (45%), Gaps = 36/272 (13%)

Query: 72  AEILRLLPEVRLVVATSAGLNHI-------DVVECRRRGVALANAGNVFSEDVADYALGL 124
           A+  R L  +R V A +AG + +       +V     RG+            VA++ L L
Sbjct: 51  ADAARRLTRLRWVQALAAGPDAVLAAGFAPEVAVTSGRGL--------HDGTVAEHTLAL 102

Query: 125 LIDVLRKLSAADCFVRQGLWP--INAEFPLGSK-----LGGKRVGIVGLGSIGSEVAKRL 177
           ++  +R+L       R+  W   +    PL        L G RV I G GSIG  +A  L
Sbjct: 103 ILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIGQRLAPLL 162

Query: 178 EAFGCCV-----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232
            A G  V     S   R   P V     P   EL   +DVL++    T  T H ++ +VL
Sbjct: 163 TALGARVTGVARSAGERAGFPVVAEDELP---ELLPETDVLVMILPATPSTAHALDAEVL 219

Query: 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVL 290
            AL K   ++NVGRGA +DE  +V  L  G +GGA LDV   EP +P    L+   N++L
Sbjct: 220 AALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEP-LPASSPLWDAPNLIL 278

Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
           +PH+A   P+      EL   NL AF +  PL
Sbjct: 279 TPHAAGGRPQG---AEELIAENLRAFLAGGPL 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  111 bits (280), Expect = 4e-28
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 25/258 (9%)

Query: 88  SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN 147
           + G N++DV    + G+A+ N   V +E  A+ A  L +   R++  AD F+R GL+   
Sbjct: 94  AVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--E 151

Query: 148 AEFP---LGSKLGGKRVGIVGLGSIGSEVAKRL-EAFGCCVSY-----NSR--------- 189
              P   +G+ L G+ VG++G G IGS  A+ + E F   + Y     ++R         
Sbjct: 152 GWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG 211

Query: 190 -----NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244
                N +  VT+     + E+   +DV+ +   L   T+HLINK+ L  + K+ V++N 
Sbjct: 212 QFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNA 271

Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKD 304
            RG +IDE  +V  L    +   GLDVFE+EP +   L  + N V+ PH A  +  + + 
Sbjct: 272 SRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREG 331

Query: 305 VCELAVANLEAFFSNKPL 322
           +  LA  N+       P+
Sbjct: 332 MATLAALNVLGKLKGYPV 349

Length = 386

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  109 bits (276), Expect = 6e-28
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 14/233 (6%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           +T E+L   P++  +     G N +D+    +RG+ + NA   N  S  VA+  +G +I 
Sbjct: 54  LTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGEIIM 111

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGS-KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS- 185
           + R+L   +    +G+W  +A    GS ++ GK +GI+G G IGS+++   EA G  V  
Sbjct: 112 LARRLPDRNAAAHRGIWNKSAT---GSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIF 168

Query: 186 YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
           Y+   K P         + EL A +D + +    T  T ++I  + +  + K  ++IN  
Sbjct: 169 YDIAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINAS 228

Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPH 293
           RG ++D   +   L  G + GA +DVF  EP    + F+     L NV+L+PH
Sbjct: 229 RGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPH 281

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  108 bits (271), Expect = 6e-27
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 12/263 (4%)

Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           A +TAE +     ++L +    G +H+D+     RG+ +A         VA++ + +++ 
Sbjct: 72  AYMTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILI 131

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           ++R          +G W +         L GK VG VG G IG  V +RL+ F   + Y 
Sbjct: 132 LVRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYY 191

Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-I 241
            R++ P      +    + D+ ++ +  DV+ I C L  +T  L NK+ LL+  KKG  +
Sbjct: 192 DRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKE-LLSKMKKGAYL 250

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFT 298
           +N  RG I D + +   L  G + G   DV+  +P   D P     + N  ++PH +  T
Sbjct: 251 VNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP--WRTMPNNAMTPHISGTT 308

Query: 299 PESFKDVCELAVANLEAFFSNKP 321
            ++           LE FF  +P
Sbjct: 309 LDAQARYAAGTKEILERFFEGEP 331

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  106 bits (268), Expect = 1e-26
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 46/274 (16%)

Query: 72  AEILRLLPEVRLVVATSAGLNHI-------DVVECRRRGVALANAGNVFSEDVADYALGL 124
             +L  LP ++ + +  AG++H+       DV   R     L + G   ++ +A+Y L  
Sbjct: 50  PGLLARLPNLKAIFSLGAGVDHLLADPDLPDVPIVR-----LVDPG--LAQGMAEYVLAA 102

Query: 125 LIDVLRKLSAADCFVRQGLW-----PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA 179
           ++ + R +       R+G+W        AE          RVG++GLG +G+ VA+RL A
Sbjct: 103 VLRLHRDMDRYAAQQRRGVWKPLPQRPAAER---------RVGVLGLGELGAAVARRLAA 153

Query: 180 FGCCVSYNSRNKK--PSVTYPFY-PDVCELA---ANSDVLIICCALTDQTHHLINKQVLL 233
            G  VS  SR+ K    VT  F+  +   L    A +D+L+    LT +T  ++N ++L 
Sbjct: 154 LGFPVSGWSRSPKDIEGVT-CFHGEE--GLDAFLAQTDILVCLLPLTPETRGILNAELLA 210

Query: 234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVL 290
            L +   +INVGRG  + E +++  L  G + GA LDVFE EP   D P  L+    V +
Sbjct: 211 RLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHP--LWRHPRVTV 268

Query: 291 SPH-SAVFTPESFKDVCELAVANLEAFFSNKPLL 323
           +PH +A+  P+S          N+    + +PL 
Sbjct: 269 TPHIAAITDPDS---AAAQVAENIRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  103 bits (258), Expect = 7e-25
 Identities = 70/271 (25%), Positives = 120/271 (44%), Gaps = 10/271 (3%)

Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           A +TAE +   P ++L +    G +H+D+      G+ +A      S  VA++ + +++ 
Sbjct: 102 AYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILA 161

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           ++R    +     +G W I         L G  VGIVG G IG  V +RL+ F   + Y 
Sbjct: 162 LVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 188 SRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
            R++ P        +TY  +     L +  DV+ I C L  +T HL +  VL  + +   
Sbjct: 222 DRHRLPEEVEQELGLTY--HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY 279

Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLF-ALDNVVLSPHSAVFTP 299
           ++N  RG I+D   +V  L  G + G   DV+  +P   +  +  +    ++PH +  T 
Sbjct: 280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTL 339

Query: 300 ESFKDVCELAVANLEAFFSNKPLLTPFAAVD 330
            +           LE FF  +P+   +  VD
Sbjct: 340 SAQARYAAGTREILECFFEGRPIRDEYLIVD 370

Length = 385

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 97.8 bits (244), Expect = 5e-23
 Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 30/233 (12%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALG-LLID 127
            V   +L     VR V   + G +H+D+      G+  ++A    +  V DY LG LL  
Sbjct: 48  RVDRALLEGSR-VRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTL 106

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
             R+                     G  L  +  G+VG G +G  + + L   G  V   
Sbjct: 107 AERE---------------------GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC 145

Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALT----DQTHHLINKQVLLALGKKGVIIN 243
              ++ +     +  +  +    DV+ +   LT      T HL+++  L +L     +IN
Sbjct: 146 DPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLIN 205

Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL-SPHSA 295
             RGA++D + +   LL GE   A LDV+E EP +  +L   D   + +PH A
Sbjct: 206 ASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLEL--ADLCTIATPHIA 256

Length = 381

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 97.0 bits (242), Expect = 6e-23
 Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 39/312 (12%)

Query: 34  NKFQY-LKAYESALPLHEFLTL-HAHSVK---AIFSSAGAPVTAEILRLLPE--VRLVVA 86
            KF Y L   E      E+L   + H  K   A+          E L +  E  ++ V  
Sbjct: 21  KKFGYDLTLVE------EYLNDENVHLAKGHDAVIVRGNCFADKENLEIYKEYGIKYVFT 74

Query: 87  TSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPI 146
            + G NHID+   +  G  +A   +     +A+ A  L + + R  +          + +
Sbjct: 75  RTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKV 134

Query: 147 NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYPD 202
           +  F    ++    VGI+G G IG   AK  +  G  V     Y S   K  VT+     
Sbjct: 135 D-PFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPSDAAKDVVTFV---S 190

Query: 203 VCELAANSDVLIICCA-LTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLL 260
           + EL   SD++ +    +  +   LINK+  ++  K G I IN  RG + DE+ ++  L 
Sbjct: 191 LDELLKKSDIISLHVPYIKGKNDKLINKE-FISKMKDGAILINTARGELQDEEAILEALE 249

Query: 261 RGEIGGAGLDVFENEPDVPEQLFALDN---------------VVLSPHSAVFTPESFKDV 305
            G++ G G DV  NE ++  + F  D                V+L+PH   +T E+  ++
Sbjct: 250 SGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEALSNM 309

Query: 306 CELAVANLEAFF 317
            E +  NL+ + 
Sbjct: 310 IETSYENLKEYL 321

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 28/240 (11%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           +T E+L    ++  +     G N +D+    +RG+ + NA   N  S  VA+  +G +I 
Sbjct: 65  LTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGEIIL 122

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGS-KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
           +LR +   +    +G W  +A    GS ++ GK +GIVG G IG++++   E+ G  V +
Sbjct: 123 LLRGIPEKNAKAHRGGWNKSAA---GSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF 179

Query: 187 ---NSR----NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG 239
                +    N +   +        EL A SDV+ +    T  T ++I  + L AL K G
Sbjct: 180 YDIEDKLPLGNARQVGSLE------ELLAQSDVVSLHVPETPSTKNMIGAEEL-ALMKPG 232

Query: 240 VI-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLF-----ALDNVVLSPH 293
            I IN  RG ++D   +   L  G + GA +DVF  EP      F      LDNV+L+PH
Sbjct: 233 AILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292

Length = 409

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 90.7 bits (225), Expect = 2e-20
 Identities = 72/236 (30%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRG--VALANAGNVFSEDVADYALGLL 125
           A VTAE ++    + L++    G +HID+      G  VA     NV S  VA+  L  +
Sbjct: 109 AYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVS--VAEDELMRI 166

Query: 126 IDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
           + +LR        V  G W +         L GK VG VG G IG  + +RL+ F C + 
Sbjct: 167 LILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLL 226

Query: 186 YNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
           Y+ R K            F  D+  +    DV++I   LT++T  + NK+ +  + K  +
Sbjct: 227 YHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL 286

Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPH 293
           I+N  RGAI+D + +      G IGG G DV+  +P   D P +   + N  ++PH
Sbjct: 287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWR--YMPNHAMTPH 340

Length = 386

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 82.9 bits (205), Expect = 6e-18
 Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 32/267 (11%)

Query: 69  PVTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
           P++  I +LL E  ++ +   SAG +  D+    +  + ++N  +   E +A++ +   I
Sbjct: 56  PLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAI 115

Query: 127 DVLRKLSAADCFVRQG--LW--PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRL-EAFG 181
           +++R  +     VR+    W  PI     L   +   +V ++G G IG  VAK   + +G
Sbjct: 116 NLVRHFNQIQTKVREHDFRWEPPI-----LSRSIKDLKVAVIGTGRIGLAVAKIFAKGYG 170

Query: 182 CCVS----YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
             V     + +      V Y     + E    +D++ +    T   H+L N  +     K
Sbjct: 171 SDVVAYDPFPNAKAATYVDYK--DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK 228

Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE-PDVP-------------EQLF 283
             V +N  RG+++D K ++  L  G I GA LD +E E P  P             E L 
Sbjct: 229 GAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLI 288

Query: 284 ALDNVVLSPHSAVFTPESFKDVCELAV 310
             ++V+L+PH A +T  + K++   A+
Sbjct: 289 NREDVILTPHIAFYTDAAVKNLIVDAL 315

Length = 332

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 81.9 bits (202), Expect = 1e-17
 Identities = 49/243 (20%), Positives = 116/243 (47%), Gaps = 18/243 (7%)

Query: 81  VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
           ++ +   +AG +  D+   ++  + ++N  +   E +A+Y++ + + ++R+    +  V+
Sbjct: 70  IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129

Query: 141 QGLWPINAEFPLGSK-LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF 199
              +   A   + SK +    V I+G G IG+  AK    FG  ++         + +  
Sbjct: 130 AHDFTWQA--EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT 187

Query: 200 YPDVCELA-ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGC 258
           Y D  + A  ++D++ +      +++HL +K +   + K  +++N  RGA+I+  +++  
Sbjct: 188 YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAA 247

Query: 259 LLRGEIGGAGLDVFENEP--------------DVPEQLFALDNVVLSPHSAVFTPESFKD 304
           +  G + GA +D +ENE                   +L   + ++++PH A F+ E+ ++
Sbjct: 248 VNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQN 307

Query: 305 VCE 307
           + E
Sbjct: 308 LVE 310

Length = 330

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 70.6 bits (173), Expect = 9e-14
 Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)

Query: 161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--PSVTYPFYPDVCELAA---NSDVLII 215
           +GI+G G +GS+VA+ L+ +G  +   SR++K  P V      +  EL+A    + VLI 
Sbjct: 139 IGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGRE--ELSAFLSQTRVLIN 196

Query: 216 CCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE 275
               T +T  +IN+Q+L  L     ++N+ RG  + E +++  L  G++ GA LDVF  E
Sbjct: 197 LLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSRE 256

Query: 276 PDVPEQ-LFALDNVVLSPHSAVFT 298
           P  PE  L+    V ++PH A  T
Sbjct: 257 PLPPESPLWQHPRVAITPHVAAVT 280

Length = 312

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 51/276 (18%)

Query: 61  AIFSSAGAPVTAEILRLLPEVR-------LVVATSAGLNHIDVVECRRRGVALANAGNVF 113
            +  S    +  E+L   P ++       L    SA   ++D+   R  G+ +    +  
Sbjct: 49  CVLVSYTTQIDEEVLEACPNIKYIGMCCSLYSEESA---NVDIAAARENGITVTGIRDYG 105

Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEV 173
            E V +Y +  LI +L              W    E P   +L G +VGI+GLG+ G  +
Sbjct: 106 DEGVVEYVISELIRLLHGF-------GGKQW---KEEPR--ELTGLKVGIIGLGTTGQMI 153

Query: 174 AKRLEAFGCCVSYNSRNKKPSVT---YPFYPDVCELAANSDVLIICCALTDQTHHLINKQ 230
           A  L  FG  V Y SR +KP        + P + EL    DV+  C          + K 
Sbjct: 154 ADALSFFGADVYYYSRTRKPDAEAKGIRYLP-LNELLKTVDVICTC----------LPKN 202

Query: 231 VLL-------ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVF--ENEPDVPEQ 281
           V+L        LG   ++ N   G   + +      L+  +  +G ++F  +    + ++
Sbjct: 203 VILLGEEEFELLGDGKILFNTSLGPSFEVEA-----LKKWLKASGYNIFDCDTAGALGDE 257

Query: 282 -LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
            L    NV+ +  SA +T ++F+ + +  +ANLE +
Sbjct: 258 ELLRYPNVICTNKSAGWTRQAFERLSQKVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query: 81  VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
           ++ V   +AG +H+D    ++ G+  + A    +  V +Y    L+     L+  D F  
Sbjct: 59  IKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLL----MLAERDGFS- 113

Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFY 200
                          L  + VGIVG+G++G  +  RLEA G         +        +
Sbjct: 114 ---------------LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDF 158

Query: 201 PDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
             + EL   +D+L     L      +T HL +++++ +L    ++IN  RGA++D   ++
Sbjct: 159 RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL 218

Query: 257 GCLLRGEIGGAGLDVFENEPDVPEQLFALDNV-VLSPHSAVFTPE 300
            CL  G+     LDV+E EP++  +L  L  V + +PH A +T E
Sbjct: 219 TCLNEGQKLSVVLDVWEGEPELNVEL--LKKVDIGTPHIAGYTLE 261

Length = 378

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 25/239 (10%)

Query: 53  TLHAH--SVKAIFSSAGAPVTAEILRL-LPEVRLVVATSAGLNHIDVVEC-RRRGVALAN 108
           TL     S+  +         AE   +     RL+   + G +H D+ E   R G+    
Sbjct: 57  TLAKALWSLDVVLKVKEPLTNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIA 116

Query: 109 AGNVFSEDVADYALG----LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV 164
              V    +   ++G     +  + R L      V+Q      A       + GK V +V
Sbjct: 117 VEGVELPLLTSNSIGAGELSVQFIARFLE-----VQQPGRLGGA-----PDVAGKTVVVV 166

Query: 165 GLGSIGSEVAKRLEAFGCCVSYNSRNKK-----PSVTYPFYPDVCELAANSDVLIICCAL 219
           G G +G E A+ L   G  V     N +       +      ++ E  A +DV++    L
Sbjct: 167 GAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLL 226

Query: 220 TDQTHHLINKQVLLALGKKG-VIINVGRGAI-IDEKEMVGCLLRGEIGGAGLDVFENEP 276
             +   ++  + L+   K G VI+NV  GA+   +      L  G       DV    P
Sbjct: 227 PGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGP 285

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	100.0
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.89
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.65
PLN02494	477	adenosylhomocysteinase	99.63
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.52
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.5
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.41
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.4
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.35
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.3
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.29
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.25
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.25
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.19
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.17
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.17
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.15
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.09
PLN02256	304	arogenate dehydrogenase	99.08
PLN02712	667	arogenate dehydrogenase	99.06
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.01
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.0
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.99
PLN02858	1378	fructose-bisphosphate aldolase	98.97
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.94
PRK08655	437	prephenate dehydrogenase; Provisional	98.94
PLN02858	1378	fructose-bisphosphate aldolase	98.93
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.92
PRK07417	279	arogenate dehydrogenase; Reviewed	98.89
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.89
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.88
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.87
PLN02712	667	arogenate dehydrogenase	98.84
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.83
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.8
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.79
PRK06545	359	prephenate dehydrogenase; Validated	98.79
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.78
PRK08818	370	prephenate dehydrogenase; Provisional	98.78
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.77
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.76
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.74
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.74
PRK05225	487	ketol-acid reductoisomerase; Validated	98.72
PLN02688	266	pyrroline-5-carboxylate reductase	98.72
PRK08507	275	prephenate dehydrogenase; Validated	98.7
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.66
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.66
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.65
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.65
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.65
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.64
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.63
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.62
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.61
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.61
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.58
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.57
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.56
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.55
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.55
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.53
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.51
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.49
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.48
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.47
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.47
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.46
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.45
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.44
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.43
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.42
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.41
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.4
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.37
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.37
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.36
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.34
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.33
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.31
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.3
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.28
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.28
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.28
PRK07680	273	late competence protein ComER; Validated	98.27
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.25
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.24
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.22
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.21
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.18
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.13
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.11
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.08
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.06
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.0
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.0
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.99
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.99
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.99
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.97
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.94
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.94
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.93
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.91
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.9
PLN00203	519	glutamyl-tRNA reductase	97.89
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.89
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.89
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.89
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.88
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.84
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.83
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.81
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.81
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.8
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.77
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.69
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.69
PRK06141	314	ornithine cyclodeaminase; Validated	97.69
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.67
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.66
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.65
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.65
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.63
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.63
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.63
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.62
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.61
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.6
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.6
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.58
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.58
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.56
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.55
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.54
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.54
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
PRK06444	197	prephenate dehydrogenase; Provisional	97.53
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.52
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.52
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.5
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.5
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.48
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.47
PRK14982	340	acyl-ACP reductase; Provisional	97.46
PRK07340	304	ornithine cyclodeaminase; Validated	97.45
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.45
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.43
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.43
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.4
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.4
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.37
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.36
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.35
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.32
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.31
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.27
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.26
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.26
PRK08618	325	ornithine cyclodeaminase; Validated	97.25
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.24
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.23
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.22
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.21
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.19
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.19
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.17
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.16
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.15
PRK06046	326	alanine dehydrogenase; Validated	97.12
PTZ00117	319	malate dehydrogenase; Provisional	97.11
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.1
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.09
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.08
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.07
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.05
PLN02477	410	glutamate dehydrogenase	97.04
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.03
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.02
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.01
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.01
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.99
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.98
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.97
PRK08291	330	ectoine utilization protein EutC; Validated	96.92
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.91
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.9
PRK06823	315	ornithine cyclodeaminase; Validated	96.9
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.9
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.88
PRK06199	379	ornithine cyclodeaminase; Validated	96.8
PRK14031	444	glutamate dehydrogenase; Provisional	96.79
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.78
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.77
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.76
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.75
PRK09414	445	glutamate dehydrogenase; Provisional	96.74
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.72
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.67
PRK06407	301	ornithine cyclodeaminase; Provisional	96.65
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.64
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.63
PRK07589	346	ornithine cyclodeaminase; Validated	96.61
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.59
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.58
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.55
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.49
PRK06223	307	malate dehydrogenase; Reviewed	96.44
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.44
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.44
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.39
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.38
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.38
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.35
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.31
PRK14030	445	glutamate dehydrogenase; Provisional	96.31
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.3
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.3
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.29
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.28
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.25
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.23
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.2
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.15
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.14
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.12
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.09
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.07
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.07
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.06
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.06
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.06
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.04
PRK09496	453	trkA potassium transporter peripheral membrane com	96.02
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.02
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.98
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.97
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.97
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.96
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.89
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	95.85
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.83
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.8
COG5322	351	Predicted dehydrogenase [General function predicti	95.78
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.76
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.74
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.73
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.63
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.63
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.62
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	95.62
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.62
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.61
PRK08223	287	hypothetical protein; Validated	95.58
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.57
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.57
PRK10637	457	cysG siroheme synthase; Provisional	95.57
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
PRK06270	341	homoserine dehydrogenase; Provisional	95.54
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.52
PRK02102	331	ornithine carbamoyltransferase; Validated	95.51
PRK08328	231	hypothetical protein; Provisional	95.5
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.48
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.44
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.39
PRK07411	390	hypothetical protein; Validated	95.38
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.37
PLN02527	306	aspartate carbamoyltransferase	95.37
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.33
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.33
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.31
PLN00106	323	malate dehydrogenase	95.3
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.29
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.29
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.28
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.24
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.23
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.23
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.22
PRK11579	346	putative oxidoreductase; Provisional	95.21
PRK05086	312	malate dehydrogenase; Provisional	95.2
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.17
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.16
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.15
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.15
PLN02342	348	ornithine carbamoyltransferase	95.12
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.09
PRK10669	558	putative cation:proton antiport protein; Provision	95.05
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.03
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.01
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.01
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.96
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.94
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.89
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.86
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	94.83
COG2344	211	AT-rich DNA-binding protein [General function pred	94.81
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.81
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	94.8
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.79
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.75
PRK07806	248	short chain dehydrogenase; Provisional	94.74
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.73
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.7
PRK04148	134	hypothetical protein; Provisional	94.69
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.66
PRK07877	722	hypothetical protein; Provisional	94.64
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.64
PRK12862	763	malic enzyme; Reviewed	94.63
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.61
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.54
COG2910	211	Putative NADH-flavin reductase [General function p	94.52
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.49
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.45
PLN02602	350	lactate dehydrogenase	94.39
PRK06349	426	homoserine dehydrogenase; Provisional	94.36
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.36
PRK06398	258	aldose dehydrogenase; Validated	94.32
PRK12861	764	malic enzyme; Reviewed	94.3
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.29
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	94.28
PRK09496	453	trkA potassium transporter peripheral membrane com	94.28
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.27
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.26
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.21
PRK06392	326	homoserine dehydrogenase; Provisional	94.21
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.19
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.13
PRK06128	300	oxidoreductase; Provisional	94.08
PRK05442	326	malate dehydrogenase; Provisional	94.07
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.05
PTZ00325	321	malate dehydrogenase; Provisional	94.04
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.02
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.98
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.97
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.92
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.85
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	93.83
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.8
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.7
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.67
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.66
PRK14804	311	ornithine carbamoyltransferase; Provisional	93.64
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.64
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	93.59
CHL00194	317	ycf39 Ycf39; Provisional	93.57
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.56
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.5
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	93.49
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.4
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	93.39
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.38
PRK10206	344	putative oxidoreductase; Provisional	93.37
PLN02383	344	aspartate semialdehyde dehydrogenase	93.34
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	93.32
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.26
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.24
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	93.23
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.17
PLN02214	342	cinnamoyl-CoA reductase	93.15
PRK15076	431	alpha-galactosidase; Provisional	93.14
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.11
PRK06182	273	short chain dehydrogenase; Validated	93.09
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.06
PRK08192	338	aspartate carbamoyltransferase; Provisional	93.0
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	92.93
PRK14851	679	hypothetical protein; Provisional	92.92
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.87
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	92.82
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.79
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	92.76
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	92.75
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	92.72
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.7
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.7
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	92.67
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	92.67
PRK13529	563	malate dehydrogenase; Provisional	92.56
PLN03209	576	translocon at the inner envelope of chloroplast su	92.5
PRK05884	223	short chain dehydrogenase; Provisional	92.48
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.38
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	92.37
PRK06701	290	short chain dehydrogenase; Provisional	92.35
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	92.33
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.31
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.29
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	92.29
PRK10537	393	voltage-gated potassium channel; Provisional	92.27
PRK12937	245	short chain dehydrogenase; Provisional	92.23
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	92.23
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	92.21
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.06
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.06
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.05
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	91.97
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	91.93
PLN02427	386	UDP-apiose/xylose synthase	91.93
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	91.84
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	91.83
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	91.81
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	91.77
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	91.75
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.75
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.72
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.72
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	91.64
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	91.58
PRK08324	681	short chain dehydrogenase; Validated	91.56
PRK08374	336	homoserine dehydrogenase; Provisional	91.54
PLN02178	375	cinnamyl-alcohol dehydrogenase	91.52
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	91.5
PRK06153	393	hypothetical protein; Provisional	91.2
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.18
COG1832	140	Predicted CoA-binding protein [General function pr	91.11
PRK08265	261	short chain dehydrogenase; Provisional	91.03
PRK12828	239	short chain dehydrogenase; Provisional	91.02
PRK08264	238	short chain dehydrogenase; Validated	91.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.0
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.99
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	90.94
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.84
PRK05865	854	hypothetical protein; Provisional	90.8
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.79
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	90.78
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.76
PRK12367	245	short chain dehydrogenase; Provisional	90.71
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.7
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	90.69
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.64
PRK14852	989	hypothetical protein; Provisional	90.59
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	90.59
PRK06196	315	oxidoreductase; Provisional	90.59
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.58
PRK06523	260	short chain dehydrogenase; Provisional	90.45
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	90.43
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	90.35
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	90.3
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.3
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	90.28
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.26
PRK07856	252	short chain dehydrogenase; Provisional	90.19
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	90.16
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.13
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.12
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	90.11
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	90.07
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.07
PLN02206	442	UDP-glucuronate decarboxylase	90.05
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.05
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	90.04
PLN03129	581	NADP-dependent malic enzyme; Provisional	89.93
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	89.93
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	89.84
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.77
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	89.73

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.5e-74  Score=549.03  Aligned_cols=313  Identities=29%  Similarity=0.423  Sum_probs=275.7

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      ||||||++.+.  .+...+.  |++.+++..+........+.+.+.++++|+++++ ..++++++++++|+||||++.|+
T Consensus         1 ~~~~vl~~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~   75 (323)
T PRK15409          1 MKPSVILYKAL--PDDLLQR--LEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISV   75 (323)
T ss_pred             CCceEEEeCCC--CHHHHHH--HHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECce
Confidence            67999999987  4555555  7777776443221111223345567899999975 35899999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEEecCh
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGS  168 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIiG~G~  168 (330)
                      |+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+|+|+|.... ....|.+|+|||+||||+|+
T Consensus        76 G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~  155 (323)
T PRK15409         76 GYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGR  155 (323)
T ss_pred             ecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccH
Confidence            99999999999999999999999999999999999999999999999999999996421 11247899999999999999


Q ss_pred             HHHHHHHHHH-hCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160          169 IGSEVAKRLE-AFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       169 IG~~~A~~l~-~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                      ||+.+|++++ +|||+|+||+++.....    +. .+.++++++++||+|++|+|+|++|++||+++.|++||||++|||
T Consensus       156 IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN  234 (323)
T PRK15409        156 IGMALAQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFIN  234 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence            9999999998 99999999998754321    22 246999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 020160          244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL  322 (330)
Q Consensus       244 ~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~  322 (330)
                      +|||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++.+.+++||.+|++|+++
T Consensus       235 ~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~  314 (323)
T PRK15409        235 AGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVE  314 (323)
T ss_pred             CCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999764 5899999999999999999999999999999999999999999


Q ss_pred             CCCccC
Q 020160          323 LTPFAA  328 (330)
Q Consensus       323 ~~~v~~  328 (330)
                      .|.|+.
T Consensus       315 ~~~vn~  320 (323)
T PRK15409        315 KNCVNP  320 (323)
T ss_pred             CcccCc
Confidence            998874

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-74  Score=548.40  Aligned_cols=307  Identities=31%  Similarity=0.450  Sum_probs=270.6

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      |+++++...+.  .+...+.  +...... ..........+.+.+.++++|++++ +.+++++++++.+|+||||++.|+
T Consensus         2 ~~~~vl~~~~~--~~~~~~~--l~~~~~~-~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~   75 (324)
T COG0111           2 MMIKVLVTDPL--APDALEE--LLAAYDV-EVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGA   75 (324)
T ss_pred             CcceeeccCcc--CHHHHHH--HHhcccc-ccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccc
Confidence            56788888887  5655555  5443211 1111112223344566789999998 778999999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChH
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      |+||||+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+|+|.|.+.  ...|.+|+|||+||||+|+|
T Consensus        76 Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~g~el~gkTvGIiG~G~I  153 (324)
T COG0111          76 GVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK--AFRGTELAGKTVGIIGLGRI  153 (324)
T ss_pred             cccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc--ccccccccCCEEEEECCCHH
Confidence            9999999999999999999999999999999999999999999999999999999762  23477999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCC-C---CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPS-V---TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~-~---~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      |+.+|+++++|||+|++||+..... .   +.....+|++++++||||++|+|+|++|++|||++.|++||+|++|||+|
T Consensus       154 G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         154 GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence            9999999999999999999954432 2   33446789999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc-ccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 020160          246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLT  324 (330)
Q Consensus       246 rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  324 (330)
                      ||++||++||++||++|+|+||+||||++||++++ |||++|||++|||+||+|.|++.++.+.+++|+.+|++|+++.|
T Consensus       234 RG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~  313 (324)
T COG0111         234 RGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN  313 (324)
T ss_pred             CcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999998875 99999999999999999999999999999999999999999544

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2.9e-74  Score=545.19  Aligned_cols=313  Identities=36%  Similarity=0.573  Sum_probs=279.6

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      ||++++.+.+.  .+...+.  +.+.|++..+.....+.. .+.+..+++|++++....++++++++++|+||+|+..|+
T Consensus         1 mk~~~~~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~   75 (324)
T COG1052           1 MKIVVLSTRKL--PPEVLER--LKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSA   75 (324)
T ss_pred             CCcEEEecCcC--CHHHHHH--hhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEecc
Confidence            67888888777  4556666  777788655443212222 455667899999998788999999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC--CCCCccccCCceEEEEecC
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA--EFPLGSKLGGKRVGIVGLG  167 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~--~~~~~~~l~g~~vgIiG~G  167 (330)
                      ||||||+++|+++||.|+|+|++++++||||+++|||++.|++.+.++.+|+|.|...+  ....+.+++|||+||||+|
T Consensus        76 G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~G  155 (324)
T COG1052          76 GYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLG  155 (324)
T ss_pred             ccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999997653  2345889999999999999


Q ss_pred             hHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160          168 SIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                      +||+++|+++++|||+|+||++++.+.    .++.+. +++|++++||+|++|||+|++|+||||++.|++||+|++|||
T Consensus       156 rIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVN  234 (324)
T COG1052         156 RIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVN  234 (324)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEE
Confidence            999999999999999999999987521    134444 499999999999999999999999999999999999999999


Q ss_pred             cCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC-CcccccCCc---eEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 020160          244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV-PEQLFALDN---VVLSPHSAVFTPESFKDVCELAVANLEAFFSN  319 (330)
Q Consensus       244 ~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~~~~~~~~~~~~~nl~~~~~g  319 (330)
                      +|||++||++||++||++|+|+|||+|||+.||.. +++|+.++|   |++|||+|+.|.|++.+|.+.+++|+.+|++|
T Consensus       235 taRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g  314 (324)
T COG1052         235 TARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDG  314 (324)
T ss_pred             CCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999985 568887777   99999999999999999999999999999999


Q ss_pred             CCCCCCccC
Q 020160          320 KPLLTPFAA  328 (330)
Q Consensus       320 ~~~~~~v~~  328 (330)
                      +.+.++|+.
T Consensus       315 ~~~~~~v~~  323 (324)
T COG1052         315 GVPPNEVNP  323 (324)
T ss_pred             CCCCCCCCC
Confidence            999999875

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=5.4e-72  Score=534.26  Aligned_cols=314  Identities=34%  Similarity=0.508  Sum_probs=276.8

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      |||||+++.+.  .+...+.  +++.+++..+.+......+.+.+.++++|+++++...++++++++++|+||||++.|+
T Consensus         1 ~~~kil~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~   76 (333)
T PRK13243          1 MKPKVFITREI--PENGIEM--LEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAV   76 (333)
T ss_pred             CCceEEEECCC--CHHHHHH--HhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCc
Confidence            68999998876  4555555  7776665433221111234445667899999987666899999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-----CCCCccccCCceEEEE
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-----EFPLGSKLGGKRVGIV  164 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-----~~~~~~~l~g~~vgIi  164 (330)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+|+|.|....     ....|.+|+|||||||
T Consensus        77 G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIi  156 (333)
T PRK13243         77 GYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGII  156 (333)
T ss_pred             cccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999996421     1124789999999999


Q ss_pred             ecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160          165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV  240 (330)
Q Consensus       165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai  240 (330)
                      |+|.||+.+|++|++|||+|.+|++++....    +. ...++++++++||+|++|+|++++|+++|+++.|++||+|++
T Consensus       157 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~  235 (333)
T PRK13243        157 GFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAI  235 (333)
T ss_pred             CcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeE
Confidence            9999999999999999999999999765421    22 245899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 020160          241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK  320 (330)
Q Consensus       241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~  320 (330)
                      |||+|||++||+++|+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++..++.+.+++||.+|++|+
T Consensus       236 lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~  315 (333)
T PRK13243        236 LVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGE  315 (333)
T ss_pred             EEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999987679999999999999999999999999999999999999999


Q ss_pred             CCCCCccC
Q 020160          321 PLLTPFAA  328 (330)
Q Consensus       321 ~~~~~v~~  328 (330)
                      ++.|.|+.
T Consensus       316 ~~~~~v~~  323 (333)
T PRK13243        316 VPPTLVNR  323 (333)
T ss_pred             CCCcccCH
Confidence            99998874

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-71  Score=526.09  Aligned_cols=302  Identities=27%  Similarity=0.410  Sum_probs=261.3

Q ss_pred             eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN   92 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   92 (330)
                      ||+++.+..+.+...+.  +++.+++..+. . .+ .+.+.+.++++|+++++ ..++++++++.+|+||||++.|+|+|
T Consensus         2 ki~~~~~~~~~~~~~~~--l~~~~~~~~~~-~-~~-~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d   75 (311)
T PRK08410          2 KIVILDAKTLGDKDLSV--FEEFGDFQIYP-T-TS-PEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTN   75 (311)
T ss_pred             eEEEEecCCCChhhHHH--HhhCceEEEeC-C-CC-HHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccc
Confidence            47777664224444444  76666654432 1 12 23345567899999885 56899999999999999999999999


Q ss_pred             CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC----CCccccCCceEEEEecCh
Q 020160           93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF----PLGSKLGGKRVGIVGLGS  168 (330)
Q Consensus        93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~----~~~~~l~g~~vgIiG~G~  168 (330)
                      +||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+|+|.|.....+    ..+.+|+|||+||||+|+
T Consensus        76 ~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~  155 (311)
T PRK08410         76 NVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT  155 (311)
T ss_pred             cccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence            9999999999999999999999999999999999999999999999999999643211    124689999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          169 IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       169 IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ||+.+|+++++|||+|++|+++...........++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||+
T Consensus       156 IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~  235 (311)
T PRK08410        156 IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG  235 (311)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence            99999999999999999999975432221225689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccC---CceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFAL---DNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~---~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                      +||++||++||++|+|+ |+||||++||+++ +|||++   |||++|||+||+|.++..++.+.+++|+.+|++|+.
T Consensus       236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             ccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999 9999999999865 489986   899999999999999999999999999999999863

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-70  Score=521.13  Aligned_cols=306  Identities=28%  Similarity=0.449  Sum_probs=261.3

Q ss_pred             eEEEecCCCCc--ccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160           13 QVLLLRKPSGF--AMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG   90 (330)
Q Consensus        13 ~vl~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G   90 (330)
                      ||+++++..+.  +...+.  +++.+..+......  ..+.+.+.++++|+++++ ..++++++++++|+||||++.|+|
T Consensus         2 ~i~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G   76 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSP--LEQAFDELQLHDAT--TPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATG   76 (317)
T ss_pred             eEEEEccccCCccccchhH--HHhhCCeEEEecCC--CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcc
Confidence            37777653211  222333  66555333322221  223445667899998875 468999999999999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC----CCccccCCceEEEEec
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF----PLGSKLGGKRVGIVGL  166 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~----~~~~~l~g~~vgIiG~  166 (330)
                      +|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.....+    ..+.+|+|||+||||+
T Consensus        77 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~  156 (317)
T PRK06487         77 TNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGH  156 (317)
T ss_pred             ccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999643211    1246899999999999


Q ss_pred             ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          167 GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       167 G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      |+||+.+|+++++|||+|++|+++.... . ....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus       157 G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR  234 (317)
T PRK06487        157 GELGGAVARLAEAFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR  234 (317)
T ss_pred             CHHHHHHHHHHhhCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence            9999999999999999999999864322 1 2245899999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-ccccc--CCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020160          247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFA--LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL  323 (330)
Q Consensus       247 g~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~  323 (330)
                      |++||++||++||++|+|+||+||||++||++. +|||.  +|||++|||+||+|.++..++.+.+++||.+|++|+++ 
T Consensus       235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-  313 (317)
T PRK06487        235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-  313 (317)
T ss_pred             ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence            999999999999999999999999999999875 48995  89999999999999999999999999999999999864 


Q ss_pred             CCc
Q 020160          324 TPF  326 (330)
Q Consensus       324 ~~v  326 (330)
                      +.|
T Consensus       314 ~~v  316 (317)
T PRK06487        314 RVV  316 (317)
T ss_pred             cCC
Confidence            443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-70  Score=535.03  Aligned_cols=315  Identities=24%  Similarity=0.327  Sum_probs=276.4

Q ss_pred             CCCCCCCeEEEecCCCCcccccchHhhhcc-C-eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcce
Q 020160            6 HFAVQFPQVLLLRKPSGFAMLGEQFFTSNK-F-QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRL   83 (330)
Q Consensus         6 ~~~~~k~~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~   83 (330)
                      |-+++|+||+++.+.  .+...+.  +++. + ++.. .....+ .+.+.+.++++|++++++..++++++++++|+|||
T Consensus         5 ~~~~~~~~ili~~~~--~~~~~~~--l~~~~~~~v~~-~~~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~   78 (409)
T PRK11790          5 SLPKDKIKFLLLEGV--HQSAVEV--LRAAGYTNIEY-HKGALD-EEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVA   78 (409)
T ss_pred             CCCCCCeEEEEECCC--CHHHHHH--HHhcCCceEEE-CCCCCC-HHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeE
Confidence            445566789998766  4555555  6553 5 4433 222222 33445667899999877667899999999999999


Q ss_pred             eEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160           84 VVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI  163 (330)
Q Consensus        84 I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI  163 (330)
                      |++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|...  ...+.+|+|||+||
T Consensus        79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~L~gktvGI  156 (409)
T PRK11790         79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS--AAGSFEVRGKTLGI  156 (409)
T ss_pred             EEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc--ccCcccCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999653  23478999999999


Q ss_pred             EecChHHHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160          164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII  242 (330)
Q Consensus       164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI  242 (330)
                      ||+|+||+.+|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++||
T Consensus       157 iG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI  236 (409)
T PRK11790        157 VGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILI  236 (409)
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE
Confidence            99999999999999999999999998754332 23345689999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020160          243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFF  317 (330)
Q Consensus       243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~  317 (330)
                      |+|||++||++||+++|++|+|+||+||||++||++.     +|||++|||++|||+||+|.++..++.+.+++|+.+|+
T Consensus       237 N~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~  316 (409)
T PRK11790        237 NASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYS  316 (409)
T ss_pred             ECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999764     48999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccC
Q 020160          318 SNKPLLTPFAA  328 (330)
Q Consensus       318 ~g~~~~~~v~~  328 (330)
                      +|+++.+.|+.
T Consensus       317 ~~~~~~~~vn~  327 (409)
T PRK11790        317 DNGSTLSAVNF  327 (409)
T ss_pred             cCCCcCcceec
Confidence            99999998873

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.1e-69  Score=525.42  Aligned_cols=316  Identities=24%  Similarity=0.315  Sum_probs=272.5

Q ss_pred             CCCCCeEEEecCCCCccc-ccchHhhhcc-CeEEEeccCC-CChHHHHhhcc-CCceEEEEcCCCCCCHHHHccCCC--c
Q 020160            8 AVQFPQVLLLRKPSGFAM-LGEQFFTSNK-FQYLKAYESA-LPLHEFLTLHA-HSVKAIFSSAGAPVTAEILRLLPE--V   81 (330)
Q Consensus         8 ~~~k~~vl~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~d~ii~~~~~~~~~~~l~~~~~--L   81 (330)
                      +--|++|+++.+.  .+. ..+.  |++. +++..+.... ....+.+.+.+ .++|++++....++++++++++|+  |
T Consensus        12 ~~~~~~v~~~~~~--~~~~~~~~--L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~l   87 (386)
T PLN02306         12 PNGKYRVVSTKPM--PGTRWINL--LVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGG   87 (386)
T ss_pred             CCCCceEEEeCCC--CcHHHHHH--HHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCc
Confidence            3456899999887  332 3444  6553 6654322111 11234445554 569999987767899999999996  6


Q ss_pred             ceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC-CCCccccCCce
Q 020160           82 RLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE-FPLGSKLGGKR  160 (330)
Q Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~g~~  160 (330)
                      |+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+.. ...|.+++|+|
T Consensus        88 k~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt  167 (386)
T PLN02306         88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT  167 (386)
T ss_pred             eEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999853321 22478999999


Q ss_pred             EEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCCC-------C------------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          161 VGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSV-------T------------YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +||||+|+||+.+|++++ +|||+|++||++.....       +            .....++++++++||+|++|+|+|
T Consensus       168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt  247 (386)
T PLN02306        168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD  247 (386)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence            999999999999999985 99999999998764211       0            112358999999999999999999


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHH
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE  300 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~  300 (330)
                      ++|++||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||.++++||++|||++|||+||+|.+
T Consensus       248 ~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e  327 (386)
T PLN02306        248 KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKW  327 (386)
T ss_pred             hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHH
Confidence            99999999999999999999999999999999999999999999999999999999876789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          301 SFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       301 ~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      +.+++.+.+++||.+|++|+++.|.||
T Consensus       328 ~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        328 TREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            999999999999999999999999998

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.1e-69  Score=520.50  Aligned_cols=312  Identities=24%  Similarity=0.414  Sum_probs=266.8

Q ss_pred             CcCCCCCCCCCeEEEecCCCCcccccc--hHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCC
Q 020160            2 ATHHHFAVQFPQVLLLRKPSGFAMLGE--QFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLP   79 (330)
Q Consensus         2 ~~~~~~~~~k~~vl~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~   79 (330)
                      |+||+ -+||||||++.+.  .+....  ...+ +.+++..+..  .+.++ +.+.++++|+++++ ..++++++++.+|
T Consensus        10 ~~~~~-~~~~~~vl~~~~~--~~~~~~~~~~~~-~~~~~~~~~~--~~~~e-~~~~~~~~d~~i~~-~~~~~~~~l~~~~   81 (347)
T PLN02928         10 RVHHS-DMRPTRVLFCGPE--FPASYSYTREYL-QKYPFIQVDA--VARED-VPDVIANYDICVPK-MMRLDADIIARAS   81 (347)
T ss_pred             hccCC-CCCCCEEEEECCC--chhHHHHHHHHh-hcCCeeEecC--CCHHH-HHHHhcCCcEEEEC-CCCCCHHHHhcCC
Confidence            45554 5777999999876  232111  1113 3344333221  12233 45567899998875 4589999999999


Q ss_pred             CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCC---chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCcccc
Q 020160           80 EVRLVVATSAGLNHIDVVECRRRGVALANAGNV---FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKL  156 (330)
Q Consensus        80 ~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l  156 (330)
                      +||||++.|+|+|+||++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.+++|.|..    +.+.+|
T Consensus        82 ~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~----~~~~~l  157 (347)
T PLN02928         82 QMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE----PIGDTL  157 (347)
T ss_pred             CceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc----ccccCC
Confidence            999999999999999999999999999999985   7899999999999999999999999999999953    246789


Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC----------------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT----------------YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +|||+||||+|.||+.+|++|++|||+|++|+++......                .....++++++++||+|++|+|+|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt  237 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLT  237 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCC
Confidence            9999999999999999999999999999999987432110                113568999999999999999999


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCH
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~  299 (330)
                      ++|++||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||+|.
T Consensus       238 ~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~  317 (347)
T PLN02928        238 KETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTE  317 (347)
T ss_pred             hHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChH
Confidence            99999999999999999999999999999999999999999999999999999999764 48999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020160          300 ESFKDVCELAVANLEAFFSNKPLLTP  325 (330)
Q Consensus       300 ~~~~~~~~~~~~nl~~~~~g~~~~~~  325 (330)
                      +++.++.+.+++|+.+|++|+++.+.
T Consensus       318 ~~~~~~~~~~~~nl~~~~~g~~~~~~  343 (347)
T PLN02928        318 YSYRSMGKIVGDAALQLHAGRPLTGI  343 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCce
Confidence            99999999999999999999987653

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-69  Score=510.98  Aligned_cols=269  Identities=26%  Similarity=0.446  Sum_probs=244.2

Q ss_pred             HHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHh
Q 020160           51 FLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR  130 (330)
Q Consensus        51 ~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R  130 (330)
                      .+.+.++++|++++. ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|
T Consensus        37 ~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R  115 (314)
T PRK06932         37 QTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH  115 (314)
T ss_pred             HHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHh
Confidence            345567899988874 5689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHcCCCCCCCCC----CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHH
Q 020160          131 KLSAADCFVRQGLWPINAEF----PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCEL  206 (330)
Q Consensus       131 ~~~~~~~~~~~g~W~~~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el  206 (330)
                      ++..+++.+++|.|.....+    ..+.+|+|||+||||+|.||+.+|+++++|||+|++|+++...... ..+.+++++
T Consensus       116 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~el  194 (314)
T PRK06932        116 SLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFEEV  194 (314)
T ss_pred             ChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHHHH
Confidence            99999999999999643211    1246899999999999999999999999999999999976432211 124689999


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccc--
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLF--  283 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~--  283 (330)
                      +++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +|||  
T Consensus       195 l~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~  274 (314)
T PRK06932        195 LKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQA  274 (314)
T ss_pred             HHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999764 4888  


Q ss_pred             --cCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          284 --ALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       284 --~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                        ++|||++|||+||+|.++.+++.+.+++||.+|++|+.
T Consensus       275 ~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        275 AKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             hcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence              59999999999999999999999999999999998863

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-69  Score=520.98  Aligned_cols=298  Identities=23%  Similarity=0.392  Sum_probs=265.7

Q ss_pred             hhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEe
Q 020160           32 TSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN  108 (330)
Q Consensus        32 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  108 (330)
                      |++. ++++...+...+ .+.+.+.++++|++++..  ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|
T Consensus        64 l~~~g~e~~~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n  142 (385)
T PRK07574         64 LEERGHELVVTSDKDGP-DSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAE  142 (385)
T ss_pred             HHhcCcEEEEeCCCCCC-HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEc
Confidence            5554 565543332222 344456678999999853  357999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEEC
Q 020160          109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS  188 (330)
Q Consensus       109 ~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~  188 (330)
                      ++++++.+||||++++||+++|++..+++.+++|.|........+.+|+||||||||+|+||+.+|++|++|||+|++||
T Consensus       143 ~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~d  222 (385)
T PRK07574        143 VTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTD  222 (385)
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence            99999999999999999999999999999999999975321234678999999999999999999999999999999999


Q ss_pred             CCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          189 RNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       189 ~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      ++....     .+.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus       223 r~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~  302 (385)
T PRK07574        223 RHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGH  302 (385)
T ss_pred             CCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCC
Confidence            976321     133345789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccCCC
Q 020160          264 IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD  330 (330)
Q Consensus       264 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~~  330 (330)
                      |+||+||||++||++. +|||++|||++|||+||+|.+++.++.+.+++||++|++|+++.|...+||
T Consensus       303 i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~  370 (385)
T PRK07574        303 LAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVD  370 (385)
T ss_pred             ccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEec
Confidence            9999999999999865 489999999999999999999999999999999999999999999998886

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-68  Score=516.12  Aligned_cols=293  Identities=25%  Similarity=0.355  Sum_probs=259.1

Q ss_pred             hhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEe
Q 020160           32 TSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN  108 (330)
Q Consensus        32 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  108 (330)
                      |++. ++++...+.+. ..+.+.+.++++|++|+..  ..+++++.++++|+||||++.|+|+|+||+++|+++||.|+|
T Consensus        71 l~~~g~~~v~~~~~~~-~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n  149 (386)
T PLN03139         71 LESQGHQYIVTDDKEG-PDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAE  149 (386)
T ss_pred             HHhcCCeEEEeCCCCC-CHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEE
Confidence            5554 45554333322 3344566778999999853  247999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEEC
Q 020160          109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS  188 (330)
Q Consensus       109 ~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~  188 (330)
                      ++|+|+.+||||++++||++.|++..+++.+++|.|........+.+|.||||||||+|+||+.+|++|++|||+|++||
T Consensus       150 ~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d  229 (386)
T PLN03139        150 VTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD  229 (386)
T ss_pred             CCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEC
Confidence            99999999999999999999999999999999999974321234678999999999999999999999999999999999


Q ss_pred             CCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          189 RNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       189 ~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      ++....     .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+
T Consensus       230 ~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~  309 (386)
T PLN03139        230 RLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGH  309 (386)
T ss_pred             CCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCC
Confidence            875321     133345689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020160          264 IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP  325 (330)
Q Consensus       264 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  325 (330)
                      |+||++|||++||++. +|||++|||++|||+||.|.+++.++.+.+++||.+|++|+++...
T Consensus       310 l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~  372 (386)
T PLN03139        310 IGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQ  372 (386)
T ss_pred             ceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            9999999999999865 4899999999999999999999999999999999999999975544

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=9.5e-68  Score=532.30  Aligned_cols=307  Identities=29%  Similarity=0.419  Sum_probs=272.1

Q ss_pred             eEEEecCCCCcccccchHhhhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGL   91 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   91 (330)
                      |||++.+.  .+...+.  +++. +++.. . ...+ .+.+.+.++++|++++++.+++++++++++|+||||++.|+|+
T Consensus         1 ~vli~~~~--~~~~~~~--l~~~~~~~~~-~-~~~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   73 (525)
T TIGR01327         1 KVLIADPI--SPDGIDI--LEDVGVEVDV-Q-TGLS-REELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGV   73 (525)
T ss_pred             CEEEeCCC--CHHHHHH--HHhcCcEEEe-C-CCCC-HHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCccc
Confidence            47777766  4555555  6554 45543 2 1222 3344566789999998877789999999999999999999999


Q ss_pred             CCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHH
Q 020160           92 NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGS  171 (330)
Q Consensus        92 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~  171 (330)
                      |+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+|+|+|.+.  ...|.+|+|||+||||+|+||+
T Consensus        74 d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~  151 (525)
T TIGR01327        74 DNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGS  151 (525)
T ss_pred             chhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc--ccCccccCCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999653  2357899999999999999999


Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .+|++|++|||+|++||++....    .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||
T Consensus       152 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG  231 (525)
T TIGR01327       152 IVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARG  231 (525)
T ss_pred             HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCC
Confidence            99999999999999999864321    13333458999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       248 ~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      ++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++|+.+|++|+++.|.||
T Consensus       232 ~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  311 (525)
T TIGR01327       232 GIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN  311 (525)
T ss_pred             ceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence            99999999999999999999999999999777799999999999999999999999999999999999999999999887


Q ss_pred             C
Q 020160          328 A  328 (330)
Q Consensus       328 ~  328 (330)
                      .
T Consensus       312 ~  312 (525)
T TIGR01327       312 A  312 (525)
T ss_pred             C
Confidence            5

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.8e-67  Score=526.20  Aligned_cols=306  Identities=29%  Similarity=0.407  Sum_probs=271.7

Q ss_pred             eEEEecCCCCcccccchHhhhcc--CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNK--FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG   90 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G   90 (330)
                      ||+++.+.  .+...+.  |++.  +++.. . ...+. +.+.+.++++|++++++.+++++++++++|+||||++.|+|
T Consensus         2 ~ili~~~~--~~~~~~~--l~~~~~~~v~~-~-~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G   74 (526)
T PRK13581          2 KVLVSDPI--SPAGLEI--LKDAPGVEVDV-K-TGLDK-EELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG   74 (526)
T ss_pred             eEEEeCCC--CHHHHHH--HhccCCeEEEe-C-CCCCH-HHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcc
Confidence            68888776  4555555  6664  45432 2 12223 33456678999999877778999999999999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHH
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIG  170 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG  170 (330)
                      +|+||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+.  ...|.+|+|||+||||+|+||
T Consensus        75 ~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG  152 (526)
T PRK13581         75 VDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIG  152 (526)
T ss_pred             cccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc--CccccccCCCEEEEECCCHHH
Confidence            999999999999999999999999999999999999999999999999999999653  235789999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          171 SEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       171 ~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      +.+|+++++|||+|++||++....    .+... .++++++++||+|++|+|++++|+++|+++.|++||+|++|||+||
T Consensus       153 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aR  231 (526)
T PRK13581        153 SEVAKRAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCAR  231 (526)
T ss_pred             HHHHHHHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCC
Confidence            999999999999999999865322    12332 3899999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 020160          247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF  326 (330)
Q Consensus       247 g~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  326 (330)
                      |++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|.|
T Consensus       232 G~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v  311 (526)
T PRK13581        232 GGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAV  311 (526)
T ss_pred             CceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCcee
Confidence            99999999999999999999999999999987779999999999999999999999999999999999999999999988


Q ss_pred             cC
Q 020160          327 AA  328 (330)
Q Consensus       327 ~~  328 (330)
                      |.
T Consensus       312 n~  313 (526)
T PRK13581        312 NL  313 (526)
T ss_pred             eC
Confidence            74

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-67  Score=484.53  Aligned_cols=309  Identities=25%  Similarity=0.361  Sum_probs=275.2

Q ss_pred             CCCCCCeEEEecCCCCcccccchHhhhccC-eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHc-cCCCccee
Q 020160            7 FAVQFPQVLLLRKPSGFAMLGEQFFTSNKF-QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILR-LLPEVRLV   84 (330)
Q Consensus         7 ~~~~k~~vl~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~-~~~~Lk~I   84 (330)
                      +..|+ +||++++.  .+...+.  |++.+ ++..+..  ...+ .+...++++|++++++.+++++++++ ...+||+|
T Consensus         3 s~~~~-~il~~e~~--~~~~~~~--l~~~g~~v~~~~~--~~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvV   74 (406)
T KOG0068|consen    3 SADMR-KILVAESL--DQACIEI--LKDNGYQVEFKKN--LSLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVV   74 (406)
T ss_pred             CCCcc-eEEEeccc--chHHHHH--HHhcCceEEEecc--CCHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEE
Confidence            45665 89999988  6666767  88877 4443332  2234 45566789999999999999999999 55689999


Q ss_pred             EEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEE
Q 020160           85 VATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV  164 (330)
Q Consensus        85 ~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIi  164 (330)
                      .+.++|+||+|+++|.++||.|.|+|.+|+.++||+++++++++.|++.+....+|+|.|++.  -.+|.+++|||+||+
T Consensus        75 grag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~--~~~G~el~GKTLgvl  152 (406)
T KOG0068|consen   75 GRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRV--KYLGWELRGKTLGVL  152 (406)
T ss_pred             EecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeec--ceeeeEEeccEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999875  246999999999999


Q ss_pred             ecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160          165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV  240 (330)
Q Consensus       165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai  240 (330)
                      |+|+||+.+|++++++||+|++||+......    +.+ ..+++|++..||||++|+|++|+|++|++.+.|++||+|..
T Consensus       153 G~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVr  231 (406)
T KOG0068|consen  153 GLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVR  231 (406)
T ss_pred             ecccchHHHHHHHHhcCceEEeecCCCchHHHHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcE
Confidence            9999999999999999999999998754432    223 56999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC---CcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020160          241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV---PEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFF  317 (330)
Q Consensus       241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~  317 (330)
                      +||++||++||+.||++||++|+++||++|||+.||..   ...|.++|||++|||+|++|.|++.+++..+++++..|.
T Consensus       232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~  311 (406)
T KOG0068|consen  232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYI  311 (406)
T ss_pred             EEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999976   357999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcc
Q 020160          318 SNKPLLTPFA  327 (330)
Q Consensus       318 ~g~~~~~~v~  327 (330)
                      +| .....||
T Consensus       312 ~~-~~~g~Vn  320 (406)
T KOG0068|consen  312 NG-NSAGSVN  320 (406)
T ss_pred             cc-Cccceec
Confidence            98 3443343

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-65  Score=487.25  Aligned_cols=274  Identities=18%  Similarity=0.350  Sum_probs=251.1

Q ss_pred             hhccCCceEEEEcCCCCCCHHHHccCC--CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHh
Q 020160           53 TLHAHSVKAIFSSAGAPVTAEILRLLP--EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR  130 (330)
Q Consensus        53 ~~~~~~~d~ii~~~~~~~~~~~l~~~~--~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R  130 (330)
                      .+.++++|++++....++++++++++|  +||+|++.|+|+|+||+++|+++||.|+|+|++++++||||++++||++.|
T Consensus        40 ~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R  119 (330)
T PRK12480         40 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR  119 (330)
T ss_pred             HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHH
Confidence            566789999998766789999999998  899999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC-CCCCCCHHHHhhc
Q 020160          131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT-YPFYPDVCELAAN  209 (330)
Q Consensus       131 ~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~ell~~  209 (330)
                      ++..+++.+++|.|.... ...+++|+|++|||||+|.||+.+|++|++|||+|++|++++..... .....++++++++
T Consensus       120 ~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~  198 (330)
T PRK12480        120 RFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKD  198 (330)
T ss_pred             hHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhc
Confidence            999999999999763221 12477899999999999999999999999999999999998654322 2234589999999


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC----------C
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV----------P  279 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~  279 (330)
                      ||+|++|+|++++|+++++++.|++||+|++|||+|||.+||+++|+++|++|+|+||+||||++||+.          +
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~  278 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDID  278 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999952          1


Q ss_pred             ----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          280 ----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       280 ----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                          ++||++|||++|||+|++|.+++.++.+.+++|+.+|++|++..+.|+
T Consensus       279 ~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        279 DKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             chhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence                269999999999999999999999999999999999999999999875

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=4.7e-65  Score=486.47  Aligned_cols=312  Identities=21%  Similarity=0.304  Sum_probs=269.7

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhccCeEEE-eccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCC--cceeE
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLK-AYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVV   85 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~--Lk~I~   85 (330)
                      +||++++++.+.  .....+.  +.+.+++.. ...... .++. .+.++++|+++++..+++++++++++|+  ||+|+
T Consensus         1 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~-~~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~   74 (332)
T PRK08605          1 MTKIKIMSVRDE--DAPYIKA--WAEKHHVEVDLTKEAL-TDDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIA   74 (332)
T ss_pred             CcEEEEEecCHH--HHHHHHH--HHHhcCeEEEEecCCC-CHHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEE
Confidence            488889998876  4455555  545455432 222222 2333 3566899999987778999999999997  99999


Q ss_pred             EcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEe
Q 020160           86 ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVG  165 (330)
Q Consensus        86 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG  165 (330)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ...+++|+|++|||||
T Consensus        75 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG  153 (332)
T PRK08605         75 QRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIG  153 (332)
T ss_pred             EcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999874221 1247899999999999


Q ss_pred             cChHHHHHHHHH-HhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160          166 LGSIGSEVAKRL-EAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII  242 (330)
Q Consensus       166 ~G~IG~~~A~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI  242 (330)
                      +|.||+++|++| ++|||+|.+||++.....  ......++++++++||+|++|+|.++.|+++++++.++.||+|++||
T Consensus       154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailI  233 (332)
T PRK08605        154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFV  233 (332)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEE
Confidence            999999999999 789999999998765321  22334589999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCc------------ccccCCceEEcCCCCCCCHHHHHHHHHH
Q 020160          243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPE------------QLFALDNVVLSPHSAVFTPESFKDVCEL  308 (330)
Q Consensus       243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~------------~L~~~~nvilTPHia~~t~~~~~~~~~~  308 (330)
                      |+|||.++|+++|+++|++|+|+||+||||+.||.  +.+            +||++|||++|||+||+|.+++.++.+.
T Consensus       234 N~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~  313 (332)
T PRK08605        234 NCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVD  313 (332)
T ss_pred             ECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999983  211            4999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCcc
Q 020160          309 AVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       309 ~~~nl~~~~~g~~~~~~v~  327 (330)
                      +++|+.+|++|++..|.|+
T Consensus       314 ~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        314 ALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             HHHHHHHHHcCCCCCCCcC
Confidence            9999999999999998875

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.4e-62  Score=461.39  Aligned_cols=268  Identities=46%  Similarity=0.773  Sum_probs=246.4

Q ss_pred             eEEEEcCCCCCCHHHHccC-CCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHH
Q 020160           60 KAIFSSAGAPVTAEILRLL-PEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCF  138 (330)
Q Consensus        60 d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~  138 (330)
                      .++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||.|+|+|+.+.++|||++++++|.++|++...+++
T Consensus        63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~  142 (336)
T KOG0069|consen   63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM  142 (336)
T ss_pred             eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3444444456777777766 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-C---CCCCCCHHHHhhcCCEEE
Q 020160          139 VRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-T---YPFYPDVCELAANSDVLI  214 (330)
Q Consensus       139 ~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~---~~~~~~l~ell~~aDvV~  214 (330)
                      +++|+|.....++.|..+.||||||+|+|+||+.+|+||++||+.+.|+.|++.... .   .....++++++.+||+|+
T Consensus       143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv  222 (336)
T KOG0069|consen  143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV  222 (336)
T ss_pred             hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence            999999655556778999999999999999999999999999988999999776432 1   122569999999999999


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCC
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHS  294 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHi  294 (330)
                      +|||+|++|+|+||++.|.+||+|++|||++||.++|++++++||++|+|+||+||||++||.++++|+.++||++|||+
T Consensus       223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi  302 (336)
T KOG0069|consen  223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI  302 (336)
T ss_pred             EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999767799999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          295 AVFTPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       295 a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      |+.|.+++.+|+..++.|+.+++.|+++.++++
T Consensus       303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence            999999999999999999999999999988775

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=9.5e-61  Score=460.36  Aligned_cols=276  Identities=22%  Similarity=0.342  Sum_probs=238.0

Q ss_pred             eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN   92 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   92 (330)
                      ||++....   +...+.  +++.+++........+.     +.++++|++++++.+++++++++ .|+||+|+++++|+|
T Consensus         2 kIl~d~~~---~~~~~~--~~~~~ev~~~~~~~~~~-----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D   70 (378)
T PRK15438          2 KILVDENM---PYAREL--FSRLGEVKAVPGRPIPV-----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTD   70 (378)
T ss_pred             EEEEeCCc---chHHHH--HhhcCcEEEeCCCCCCH-----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECccccc
Confidence            57777655   222333  55556765432222221     23578999999888899999996 699999999999999


Q ss_pred             CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHH
Q 020160           93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSE  172 (330)
Q Consensus        93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~  172 (330)
                      |||+++++++||.|+|+||+|+.+||||++++||++.|+.                    +.+|+||||||||+|+||+.
T Consensus        71 ~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~--------------------g~~L~gktvGIIG~G~IG~~  130 (378)
T PRK15438         71 HVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD--------------------GFSLHDRTVGIVGVGNVGRR  130 (378)
T ss_pred             ccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC--------------------CCCcCCCEEEEECcCHHHHH
Confidence            9999999999999999999999999999999999999861                    34689999999999999999


Q ss_pred             HHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCcc----ccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          173 VAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       173 ~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~----t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      +|++|++|||+|++||+..........+.++++++++||+|++|+|+|++    |++||+++.|++||+|++|||+|||+
T Consensus       131 vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~  210 (378)
T PRK15438        131 LQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA  210 (378)
T ss_pred             HHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCch
Confidence            99999999999999997543222112356899999999999999999996    99999999999999999999999999


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                      +||++||+++|++|++.||+||||++||.++.+||..++ |+|||+||+|.+...++..++++|+.+|+ |.+
T Consensus       211 vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~  281 (378)
T PRK15438        211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE  281 (378)
T ss_pred             hcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence            999999999999999999999999999977778988776 99999999999999999999999999999 544

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-61  Score=450.91  Aligned_cols=256  Identities=29%  Similarity=0.395  Sum_probs=228.9

Q ss_pred             CCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHH
Q 020160           57 HSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAAD  136 (330)
Q Consensus        57 ~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~  136 (330)
                      .++|++++.. .      +..+++||||++.|+|+|+||+++|++++|.++|. |.++.+||||++++||+++|++..++
T Consensus        33 ~~a~~~~~~~-~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~  104 (303)
T PRK06436         33 YDAEAILIKG-R------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN  104 (303)
T ss_pred             CCCCEEEecC-C------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence            4678886543 1      23468999999999999999999999988877775 78999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCC-CCCCHHHHhhcCCEEEE
Q 020160          137 CFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-FYPDVCELAANSDVLII  215 (330)
Q Consensus       137 ~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~-~~~~l~ell~~aDvV~l  215 (330)
                      +.+++|.|...    .+.+|+|||+||||+|+||+.+|+++++|||+|++|+++.... +.. ...++++++++||+|++
T Consensus       105 ~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~  179 (303)
T PRK06436        105 YNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLI  179 (303)
T ss_pred             HHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEE
Confidence            99999999643    3578999999999999999999999999999999999975432 222 25689999999999999


Q ss_pred             eccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCC
Q 020160          216 CCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA  295 (330)
Q Consensus       216 ~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia  295 (330)
                      |+|+|++|+++|+++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||++++.  .+|||++|||++
T Consensus       180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~  257 (303)
T PRK06436        180 SLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVA  257 (303)
T ss_pred             CCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccc
Confidence            999999999999999999999999999999999999999999999999999999999999975543  689999999986


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160          296 V-FTPESFKDVCELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       296 ~-~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                      | .|.++..++.+.+++||.+|++|++ .|.|+.
T Consensus       258 g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~  290 (303)
T PRK06436        258 GGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK  290 (303)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence            4 8899999999999999999999987 677765

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=3.1e-61  Score=455.81  Aligned_cols=262  Identities=23%  Similarity=0.321  Sum_probs=233.4

Q ss_pred             CCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhH-----HhhcCcEEEeCCC-CchhhHHHHHHHHHHHHHh
Q 020160           57 HSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVE-----CRRRGVALANAGN-VFSEDVADYALGLLIDVLR  130 (330)
Q Consensus        57 ~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~l~L~~~R  130 (330)
                      .++|+++++.   .+.+.++ .|+||||++.|+|+|++|.+.     +..+||.|+|+++ .++.+||||++++||++.|
T Consensus        37 ~~a~~~~~~~---~~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r  112 (312)
T PRK15469         37 DPADYALVWH---PPVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR  112 (312)
T ss_pred             ccCeEEEEeC---CChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence            5789988864   2567776 589999999999999998322     3458999999864 6899999999999999999


Q ss_pred             chHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC---CCCCCHHHHh
Q 020160          131 KLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY---PFYPDVCELA  207 (330)
Q Consensus       131 ~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~ell  207 (330)
                      ++..+.+.+++|.|...    .+.+++|+||||||+|.||+.+|++|++|||+|.+|+++++...+.   ....++++++
T Consensus       113 ~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l  188 (312)
T PRK15469        113 RFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL  188 (312)
T ss_pred             ChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence            99999999999999642    2457999999999999999999999999999999999876543221   1245899999


Q ss_pred             hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCC
Q 020160          208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALD  286 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~  286 (330)
                      ++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. +|||++|
T Consensus       189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~  268 (312)
T PRK15469        189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP  268 (312)
T ss_pred             hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875 4899999


Q ss_pred             ceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160          287 NVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       287 nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                      ||++|||+||+|.++  ++.+.+.+|+++|++|+++.|.|+.
T Consensus       269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~  308 (312)
T PRK15469        269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR  308 (312)
T ss_pred             CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence            999999999999874  6889999999999999999999985

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=4.5e-60  Score=456.91  Aligned_cols=278  Identities=22%  Similarity=0.321  Sum_probs=240.0

Q ss_pred             eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN   92 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   92 (330)
                      ||++-+..++   ..+.  +++..++... ... .   ...+.++++|++++++.+++++++++. |+||||++.++|+|
T Consensus         2 kI~~d~~~p~---~~~~--~~~~~~v~~~-~~~-~---~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D   70 (381)
T PRK00257          2 KIVADENIPL---LDAF--FAGFGEIRRL-PGR-A---FDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTD   70 (381)
T ss_pred             EEEEecCchh---HHHH--HhhCCcEEEc-CCc-c---cCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCcccc
Confidence            6777777632   2222  4444454432 211 1   112345789999998888999999985 89999999999999


Q ss_pred             CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHH
Q 020160           93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSE  172 (330)
Q Consensus        93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~  172 (330)
                      |||+++++++||.|+|+||+|+.+||||+++++|++.|+                    .+.+++||||||||+|+||+.
T Consensus        71 ~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------------------~g~~l~gktvGIIG~G~IG~~  130 (381)
T PRK00257         71 HLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------------------EGVDLAERTYGVVGAGHVGGR  130 (381)
T ss_pred             ccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--------------------cCCCcCcCEEEEECCCHHHHH
Confidence            999999999999999999999999999999999999875                    134689999999999999999


Q ss_pred             HHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCc----cccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          173 VAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       173 ~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~----~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      +|+++++|||+|++||+......+...+.++++++++||+|++|+|+|+    .|++||+++.|++||+|++|||+|||+
T Consensus       131 va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~  210 (381)
T PRK00257        131 LVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGA  210 (381)
T ss_pred             HHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCc
Confidence            9999999999999999865432222335689999999999999999999    599999999999999999999999999


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 020160          249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL  322 (330)
Q Consensus       249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~  322 (330)
                      +||++||+++|++|++.||+||||++||.++++||+. |+++|||+||+|.++..++.+++++|+.+|+.+...
T Consensus       211 vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~  283 (381)
T PRK00257        211 VVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR  283 (381)
T ss_pred             ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999999766789985 999999999999999999999999999999988753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=7.9e-49  Score=343.60  Aligned_cols=173  Identities=40%  Similarity=0.620  Sum_probs=151.2

Q ss_pred             HHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC
Q 020160          122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY  197 (330)
Q Consensus       122 l~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~  197 (330)
                      +++||++.|++..+++.+++|.|. ......+++++|+||||||+|+||+.+|+++++|||+|++|+++.....    ..
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~-~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWA-SRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHH-HHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCC-CCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            589999999999999999999991 1112357899999999999999999999999999999999999886432    11


Q ss_pred             CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC
Q 020160          198 PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD  277 (330)
Q Consensus       198 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  277 (330)
                      ..+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||.
T Consensus        80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            23569999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCc-ccccCCceEEcCCCC
Q 020160          278 VPE-QLFALDNVVLSPHSA  295 (330)
Q Consensus       278 ~~~-~L~~~~nvilTPHia  295 (330)
                      +.. |||++|||++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            765 999999999999987

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=100.00  E-value=5.5e-33  Score=259.02  Aligned_cols=259  Identities=23%  Similarity=0.364  Sum_probs=229.0

Q ss_pred             cCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHH
Q 020160           56 AHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAA  135 (330)
Q Consensus        56 ~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~  135 (330)
                      +.++-+-+.+....++++-+++++-||++...+.|+|++|+.+|.+.||.|||.|+..-+.+|+-+++.+|.++|+....
T Consensus        71 Lneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~  150 (435)
T KOG0067|consen   71 LNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL  150 (435)
T ss_pred             HHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence            34444444455678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCC----CC-CccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC----CCCCCCCCCHHHH
Q 020160          136 DCFVRQGLWPINAE----FP-LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP----SVTYPFYPDVCEL  206 (330)
Q Consensus       136 ~~~~~~g~W~~~~~----~~-~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~el  206 (330)
                      .+.+++|.|.+...    .. -....+|.++|++|+|+.|++++.++++||+.|+.||+....    ..+.++..+++|+
T Consensus       151 cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~  230 (435)
T KOG0067|consen  151 CQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDL  230 (435)
T ss_pred             hhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchh
Confidence            99999999854311    11 134589999999999999999999999999999999987543    2355566689999


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCccccc
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPEQLFA  284 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~  284 (330)
                      +.++|.+++||.++++++++|+.-.++.|+.|++++|++||.++|+.+|.++|++|++.|++       |.  ...+|.+
T Consensus       231 ~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d  303 (435)
T KOG0067|consen  231 LYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKD  303 (435)
T ss_pred             hhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999988       22  2247899


Q ss_pred             CCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          285 LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       285 ~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                      .||.|+|||.++++..+..++.+.++-.+++-..|.-
T Consensus       304 ~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~i  340 (435)
T KOG0067|consen  304 APNLICTPHTAWYSEAASVELREVAALEIRRAITGRI  340 (435)
T ss_pred             CCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCC
Confidence            9999999999999999999999999999998887763

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.89  E-value=2.2e-22  Score=167.86  Aligned_cols=101  Identities=26%  Similarity=0.378  Sum_probs=82.1

Q ss_pred             EEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCC
Q 020160           14 VLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNH   93 (330)
Q Consensus        14 vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   93 (330)
                      ||++.++  .+...+.  |++.+++... . .. ..+.+.+.++++|+++++..+++++++++.+|+||||++.|+|+|+
T Consensus         1 ili~~~~--~~~~~~~--l~~~~~v~~~-~-~~-~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~   73 (133)
T PF00389_consen    1 ILITDPL--PDEEIER--LEEGFEVEFC-D-SP-SEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN   73 (133)
T ss_dssp             EEESSS---SHHHHHH--HHHTSEEEEE-S-SS-SHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT
T ss_pred             eEEeccC--CHHHHHH--HHCCceEEEe-C-CC-CHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCc
Confidence            6788887  5667767  8886765443 3 22 3445566778999999987767999999999999999999999999


Q ss_pred             CChhHHhhcCcEEEeCCCCchhhHHHHH
Q 020160           94 IDVVECRRRGVALANAGNVFSEDVADYA  121 (330)
Q Consensus        94 id~~~~~~~gI~v~n~~~~~~~~vAE~a  121 (330)
                      ||+++|+++||.|+|+||+++.+||||+
T Consensus        74 id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   74 IDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             B-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             ccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            9999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=3.1e-21  Score=189.69  Aligned_cols=167  Identities=18%  Similarity=0.296  Sum_probs=136.1

Q ss_pred             EEcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160           85 VATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI  163 (330)
Q Consensus        85 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI  163 (330)
                      =-+++|+..+- ++.....+|+|+|+|++++.+++|+++++++++.      +..+|.+          +..+.|++++|
T Consensus       196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~----------~~~LaGKtVgV  259 (476)
T PTZ00075        196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT----------DVMIAGKTVVV  259 (476)
T ss_pred             ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc----------CCCcCCCEEEE
Confidence            34577876652 2222336899999999999999999999999988      3344443          23689999999


Q ss_pred             EecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160          164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK  238 (330)
Q Consensus       164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g  238 (330)
                      +|+|.||+.+|+++++||++|+++++++...     .++. ..++++++++||+|++|+    .++++|+++.|+.||+|
T Consensus       260 IG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG  334 (476)
T PTZ00075        260 CGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN  334 (476)
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence            9999999999999999999999997765432     1222 357999999999999984    47889999999999999


Q ss_pred             cEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q 020160          239 GVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP  279 (330)
Q Consensus       239 ailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~  279 (330)
                      ++|||+||+   |++.++++|+++.    ++||++.||...
T Consensus       335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            999999999   7888889998754    689999999654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=2e-20  Score=175.42  Aligned_cols=162  Identities=20%  Similarity=0.229  Sum_probs=132.8

Q ss_pred             cCCceEEEEc----------------CCCCCCHHHHccCCCcceeEEcCCCCCCCChh-HHhhcCcEEE------eCCCC
Q 020160           56 AHSVKAIFSS----------------AGAPVTAEILRLLPEVRLVVATSAGLNHIDVV-ECRRRGVALA------NAGNV  112 (330)
Q Consensus        56 ~~~~d~ii~~----------------~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~~~~  112 (330)
                      ++++|++|..                ...++++++++.+|   .++...+|+++.|++ +|+++||.|+      |++.+
T Consensus        52 ~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~  128 (287)
T TIGR02853        52 LTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY  128 (287)
T ss_pred             hccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE
Confidence            4677877762                12346789999988   377788899999998 9999999999      89999


Q ss_pred             chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          113 FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       113 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |+.++||.++.+++..                       .+.+++|++++|+|+|.||+.+|++|+++|++|++++|++.
T Consensus       129 n~~~~Ae~ai~~al~~-----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       129 NSIPTAEGAIMMAIEH-----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             ccHhHHHHHHHHHHHh-----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            9999999999887732                       12368899999999999999999999999999999999865


Q ss_pred             CC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          193 PS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       193 ~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ..     .+..  ...++.++++++|+|++|+|.+     +++++.++.||+++++||++...
T Consensus       186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            32     1221  2346778899999999999874     67888999999999999998743

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.65  E-value=3.8e-15  Score=140.50  Aligned_cols=163  Identities=19%  Similarity=0.255  Sum_probs=128.1

Q ss_pred             hccCCceEEEEcCC----------------CCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCC-----
Q 020160           54 LHAHSVKAIFSSAG----------------APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNV-----  112 (330)
Q Consensus        54 ~~~~~~d~ii~~~~----------------~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~-----  112 (330)
                      +.++++|+|+..-.                ..++++.++.+|+...+. .|.+.++++ +.|.++||.+.+....     
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            34578999886411                124788999999997444 599999988 8899999999987754     


Q ss_pred             -chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          113 -FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       113 -~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                       ++.++||.++.+++.   +                    .+.+++|++++|+|+|.+|+.+++.|+.+|++|.++++++
T Consensus       129 ~ns~~~aegav~~a~~---~--------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        129 LNSIPTAEGAIMMAIE---H--------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             hccHhHHHHHHHHHHH---h--------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence             888999987765431   0                    1234789999999999999999999999999999999986


Q ss_pred             CCC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          192 KPS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       192 ~~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ...     .+..  ...++.+.++++|+|+.++|.     .+++++.++.|++++++||++.
T Consensus       186 ~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        186 AHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             HHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            431     1222  224677889999999999874     3678899999999999999985

>PLN02494 adenosylhomocysteinase

Probab=99.63  E-value=7.9e-16  Score=151.30  Aligned_cols=116  Identities=18%  Similarity=0.257  Sum_probs=101.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .+.|++++|+|+|.||+.+|+++++||++|+++++++...     .++. ..+++++++.+|+|+.    +..++++++.
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~----tTGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVT----TTGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEE----CCCCccchHH
Confidence            4799999999999999999999999999999998876431     1332 3478899999999987    4567889999


Q ss_pred             HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCceEEEEecCCCCC
Q 020160          230 QVLLALGKKGVIINVGR-GAIIDEKEMVGC--LLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       230 ~~l~~mk~gailIN~~r-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~EP  276 (330)
                      +.|+.||+|++|+|+|| +..||+++|.++  ++.+.+. +.+|+|+.|=
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  9999998 9999999753

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.52  E-value=4e-14  Score=138.11  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=99.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++++...     .++ ...+++++++.+|+|+.++    .+.++|+.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaT----G~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITAT----GNKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence            4789999999999999999999999999999998776432     133 2346788999999998754    36788999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEEecCCC
Q 020160          230 QVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                      +.+..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999999888878899999884

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.50  E-value=4.6e-14  Score=132.80  Aligned_cols=88  Identities=24%  Similarity=0.284  Sum_probs=75.4

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ..|+||||||||+|+||+++|++|+++|++|+++++.....     .+.. ..++++++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            35899999999999999999999999999999887653321     1332 34899999999999999997 67799999


Q ss_pred             HHHHhcCCCCcEEEE
Q 020160          229 KQVLLALGKKGVIIN  243 (330)
Q Consensus       229 ~~~l~~mk~gailIN  243 (330)
                      .+.++.||+|++|+-
T Consensus        90 ~eil~~MK~GaiL~f  104 (335)
T PRK13403         90 AEVEENLREGQMLLF  104 (335)
T ss_pred             HHHHhcCCCCCEEEE
Confidence            999999999998875

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.41  E-value=8e-13  Score=123.14  Aligned_cols=116  Identities=22%  Similarity=0.270  Sum_probs=102.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~  230 (330)
                      ++||+||+|.||..+|++|...|+.|.+|||++.+.      .+.....+..|+.+++|+|++|+|.+++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            489999999999999999999999999999998762      2556678889999999999999999999998874  56


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe--cCCCCC
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD--VFENEP  276 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD--V~~~EP  276 (330)
                      .++.+|||.++||+|+.+......+.+.++++.+.  .+|  |....+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~  126 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDAPVSGGVP  126 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEecCccCCch
Confidence            89999999999999999999999999999999886  566  555544

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.40  E-value=1.9e-13  Score=117.89  Aligned_cols=111  Identities=23%  Similarity=0.365  Sum_probs=89.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc-HHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN-KQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~-~~~l  232 (330)
                      ++|||||+|.||+.+|++|...|++|.+||++++..     .+.....++.|++++||+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            689999999999999999999999999999986542     2445578999999999999999999888887753 2278


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      +.+++|.++||++..+.-....+.+.+.+..+.  .+|.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            889999999999999999999999999887764  5664

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.35  E-value=2.7e-12  Score=126.04  Aligned_cols=178  Identities=17%  Similarity=0.255  Sum_probs=121.4

Q ss_pred             CceEEEEcCCCCCCHHHHccCC----Ccc-eeEEcCCCCCCC-ChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhc
Q 020160           58 SVKAIFSSAGAPVTAEILRLLP----EVR-LVVATSAGLNHI-DVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK  131 (330)
Q Consensus        58 ~~d~ii~~~~~~~~~~~l~~~~----~Lk-~I~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~  131 (330)
                      +.++|+=.+ ..+..-+-...|    +++ .+=-+++|+..+ .+....+.+++|.|++..+..+.-|...+.-.+....
T Consensus       123 ~p~iiiDdG-gdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~a  201 (425)
T PRK05476        123 GPNMILDDG-GDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDG  201 (425)
T ss_pred             CCCEEEecc-cHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHH
Confidence            456666443 233332323333    333 234568888775 2333345689999999888877555433322222211


Q ss_pred             hHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHH
Q 020160          132 LSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCEL  206 (330)
Q Consensus       132 ~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~el  206 (330)
                      +      .+.          .+..+.|++++|+|+|.||+.+|++++++|++|+++++++....     ++. ..+++++
T Consensus       202 i------~ra----------t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~ea  264 (425)
T PRK05476        202 I------KRA----------TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEA  264 (425)
T ss_pred             H------HHh----------ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHH
Confidence            1      111          02247899999999999999999999999999999998765421     222 3478899


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-IDEKEMVG  257 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~  257 (330)
                      ++.+|+|+.++    .+.++|+.+.+..||+|++++|+|+... +|.++|.+
T Consensus       265 l~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        265 AELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            99999998764    4567899999999999999999999876 77777754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.30  E-value=7e-12  Score=117.81  Aligned_cols=106  Identities=14%  Similarity=0.227  Sum_probs=89.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc-c-HHHH
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI-N-KQVL  232 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li-~-~~~l  232 (330)
                      +|||||+|.||+.+|+.+...|++|.+|++++...     .+.....+..+++++||+|++|+|.++.++.++ + ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            58999999999999999999999999999986532     133345688899999999999999888877664 3 3467


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ..+++|.++||++++...+..++.+.++++.+.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            789999999999999998889999999887654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.29  E-value=7.5e-12  Score=117.78  Aligned_cols=118  Identities=20%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||+.+|+.+...|++|.+||+++...     .+.....++++++++||+|++++|.+..++.++.  .+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999986532     1333456888999999999999999888887763  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  276 (330)
                      ++.+++|.++||+++.......++.+.+.+..+...---|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            788999999999999998888899999988766433233555444

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.25  E-value=2.2e-11  Score=115.07  Aligned_cols=109  Identities=19%  Similarity=0.287  Sum_probs=92.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhc---CCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAAN---SDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++|||||+|.||+.+|++|...|++|.+||+++...     .+.....++++++++   +|+|++++|..+.++.+++ +
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence            379999999999999999999999999999976431     234446688898876   6999999998878888774 6


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD  270 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD  270 (330)
                      .+..+++|.++||+|+....+..++.+.+.+..+.  .+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            77889999999999999999999999999887764  577

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.25  E-value=2.1e-11  Score=115.10  Aligned_cols=111  Identities=16%  Similarity=0.216  Sum_probs=94.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||..+|+.|...|++|.+||+++...     .+.....+..+++++||+|++|+|....++.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            479999999999999999999999999999987542     2344466888999999999999998877777654  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      +..+++|.++||++++.....+.+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7789999999999999999999999999998875  4663

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.19  E-value=7.1e-11  Score=112.49  Aligned_cols=116  Identities=26%  Similarity=0.267  Sum_probs=84.7

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      ..++|++|||||+|+||+++|+.|+.+|++|+++++.....      .+.. ..+..+++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            35899999999999999999999999999998776653321      1333 34889999999999999997765 6777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE  280 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~  280 (330)
                      +++.++.|++|++| -.+.|--+  ..+    .  ..-+...||+-..|..|.
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G~~i--~~~----~--~~p~~~~~Vi~vaPn~Pg  134 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHGFNI--HFG----Q--IVPPADVDVIMVAPKGPG  134 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCCCCh--hhc----e--eccCCCCcEEEeCCCCCc
Confidence            67888999999988 55555211  111    0  111345678877775443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.17  E-value=4.6e-11  Score=102.24  Aligned_cols=99  Identities=19%  Similarity=0.365  Sum_probs=70.3

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ..+.||++.|+|||.+|+.+|++|+++|++|++++..|-..     .++. ..++++++.++|+++.++-    ...++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence            35899999999999999999999999999999999876432     2443 3479999999999887643    356788


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160          229 KQVLLALGKKGVIINVGRGAI-IDEKEMVG  257 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~-vd~~aL~~  257 (330)
                      .+.|++||+|+++.|++.... +|.+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999987544 55555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.17  E-value=9.9e-11  Score=110.69  Aligned_cols=110  Identities=24%  Similarity=0.263  Sum_probs=92.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhc---CCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAAN---SDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++|||||+|.||+.+|++|...|++|.+||++++..     .+.....+++++++.   +|+|++++|..+.++.++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            479999999999999999999999999999986532     234445688888876   699999999887777776 36


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      .+..+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            77889999999999999999999999999988875  5673

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.15  E-value=1.1e-10  Score=116.84  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=99.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCC---CCCCHHHHhhc---CCEEEEeccCCccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYP---FYPDVCELAAN---SDVLIICCALTDQT  223 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~ell~~---aDvV~l~~P~t~~t  223 (330)
                      .+|||||+|.||+.+|++|...|++|.+|||++++..         +..   ...+++|+.+.   +|+|++++|..+.+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            3799999999999999999999999999999865321         222   45688998876   99999999999999


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  276 (330)
                      +.++ ...++.+++|.++||+|....-+...+.+.+++..+.....=|+..++
T Consensus        87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            9888 468899999999999999999999999999999988755555666655

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.09  E-value=3.1e-10  Score=107.01  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=91.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK--QVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l  232 (330)
                      ++|||||+|.||..+|+.|...|++|.+|++++...    .+.....+..+++++||+|++++|..+..+..+..  ..+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            379999999999999999999999999998876421    13444568889999999999999988887776532  357


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      +.+++|.++|+++....-....+.+.+.+..+.  .+|.
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            778999999999999988888999999887664  5664

>PLN02256 arogenate dehydrogenase

Probab=99.08  E-value=1.1e-09  Score=103.82  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=91.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHh-hcCCEEEEeccCCccccccccHH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELA-ANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      -++++|||||+|.||+.+|+.++..|++|.+++++....    .+.....++++++ .++|+|++|+|.. .+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence            367899999999999999999999999999999875321    1333456777876 4799999999964 566666432


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC----cccccCCceEEcCCC
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP----EQLFALDNVVLSPHS  294 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~L~~~~nvilTPHi  294 (330)
                      ....+++++++++++.++-+..+++.+.+..+.      .+...-|...    ...+...+++++|..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~  174 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVR  174 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecce
Confidence            256789999999999976555666666654321      1222333211    134555667777754

>PLN02712 arogenate dehydrogenase

Probab=99.06  E-value=2.7e-10  Score=118.34  Aligned_cols=108  Identities=18%  Similarity=0.308  Sum_probs=84.4

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhh-cCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAA-NSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.+++|||||+|.||+.+|+.++.+|++|.+|+++....    .+.....++++++. .+|+|++|+|. ..+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence            667899999999999999999999999999999999875321    13334567888776 59999999995 5777777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      .+-....||+|++++|++.++-...+++.+.+..
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            6544457999999999999885555555555544

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.01  E-value=1e-09  Score=109.58  Aligned_cols=117  Identities=20%  Similarity=0.259  Sum_probs=97.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------C--CCCCCCHHHHhh---cCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------T--YPFYPDVCELAA---NSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~--~~~~~~l~ell~---~aDvV~l~~P~t~~t~  224 (330)
                      .+|||||+|.||+.+|++|...|++|.+|||+++...         +  .....+++++++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            4799999999999999999999999999999876410         2  123568889886   5899999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  276 (330)
                      .++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.....=|...++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            888 467888999999999999999999999999999988744444555443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.00  E-value=1.6e-09  Score=102.30  Aligned_cols=109  Identities=18%  Similarity=0.256  Sum_probs=88.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHh---hcCCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELA---ANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell---~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++|||||+|.||..+|+.|...|++|.+|||++...     .+.....+++++.   .++|+|++++|.. .++.++ .+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            479999999999999999999999999999986542     1223335666654   5689999999987 777777 46


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      ..+.+++|.++||++.+...+...+.+.+++..+.  .+|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            77889999999999999989999999999887765  4553

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.99  E-value=1.5e-09  Score=106.50  Aligned_cols=99  Identities=18%  Similarity=0.292  Sum_probs=80.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ..+.|++++|+|+|.||+.+|++++++|++|+++++++...     .++. ..++++.++.+|+|+.+.    .+.++++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~at----G~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTT----GNKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECC----CCHHHHH
Confidence            35789999999999999999999999999999998876542     2332 235678889999998764    2456788


Q ss_pred             HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160          229 KQVLLALGKKGVIINVGRGAI-IDEKEMVG  257 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~-vd~~aL~~  257 (330)
                      .+.+..||+|++++|+|++.+ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 77777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.97  E-value=1.6e-09  Score=120.20  Aligned_cols=115  Identities=19%  Similarity=0.124  Sum_probs=97.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc--cH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI--NK  229 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~  229 (330)
                      ..++||+||+|.||..+|++|...|++|.+||+++...     .+.....+..|+.++||+|++|+|..+.++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            46789999999999999999999999999999987642     245567899999999999999999999988886  34


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      ..++.+++|.++|++|+...-....+.+.+.+..-....+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            578889999999999999999999999999887611135664

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.94  E-value=2.5e-09  Score=99.04  Aligned_cols=114  Identities=19%  Similarity=0.219  Sum_probs=96.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc-
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN-  228 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~-  228 (330)
                      ..+.++||+||+|.||..++..|-..|++|++|||+.+..     .+.....+..|+.+.||+|+.++|...+.+.++. 
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g  111 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG  111 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence            3468899999999999999999999999999999987653     3566678999999999999999999999888774 


Q ss_pred             -HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160          229 -KQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLRGEIGGAGLD  270 (330)
Q Consensus       229 -~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~g~i~ga~lD  270 (330)
                       ...|+..++|... |+.+.-+.--...|.++++.....  .+|
T Consensus       112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence             3467778888776 899887777778899999888765  566

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.94  E-value=6.1e-09  Score=103.45  Aligned_cols=136  Identities=20%  Similarity=0.300  Sum_probs=95.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|+||| +|.||+.+|+.++..|++|.++++++...      .+.....+..+.+.+||+|++++|.. .+..++ .+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            4799998 89999999999999999999999876431      13333457788899999999999974 445555 456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCcccccCCceEEcCCCCCCCHHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPEQLFALDNVVLSPHSAVFTPESFK  303 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~~~nvilTPHia~~t~~~~~  303 (330)
                      .+.+++++++++++..+....+++.+.+..+ .     .+....|.  +..+++....+++||+- +.+.+...
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~-----~~V~~HPmaGp~~~~~~g~~~il~p~~-~~~~~~~~  145 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-V-----EILPTHPMFGPRTPSLKGQVVILTPTE-KRSNPWFD  145 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-C-----EEEEcCCCCCCCCcccCCCEEEEecCC-CCCHHHHH
Confidence            7789999999999986655555666555432 1     12222332  22357777899999965 23344333

>PLN02858 fructose-bisphosphate aldolase

Probab=98.93  E-value=2.4e-09  Score=118.91  Aligned_cols=112  Identities=22%  Similarity=0.154  Sum_probs=94.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc--cH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI--NK  229 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~  229 (330)
                      +.++|||||+|.||..+|++|...|++|.+||+++...     .+.....+..+++++||+|++|+|..++++.++  +.
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            34889999999999999999999999999999986542     133345789999999999999999999888887  34


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCceEEEEe
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLR--GEIGGAGLD  270 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~--g~i~ga~lD  270 (330)
                      ..++.+++|.++||+|..+.-....+.+.+.+  ..+.  .+|
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD  443 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD  443 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence            57888999999999999998888899999988  5554  555

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.92  E-value=2.1e-09  Score=100.97  Aligned_cols=106  Identities=15%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             EEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHHHhcC
Q 020160          163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQVLLAL  235 (330)
Q Consensus       163 IiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~l~~m  235 (330)
                      |||+|.||..+|+.|...|++|.+|++++...     .+.....++.+++++||+|++|+|..+.++.++.  ...++.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999986532     1334456889999999999999998777777762  4567789


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160          236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD  270 (330)
Q Consensus       236 k~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD  270 (330)
                      ++|.++||++..+.-....+.+.+.+..+.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999987777777888888876664  566

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.89  E-value=7.2e-09  Score=96.97  Aligned_cols=137  Identities=21%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ++|||||+|.||+.+|..|+..|++|.+|++++...     .+. ....+..+.+++||+|++|+|..... .++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~-~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLL-PPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHH-HHH-HHHH
Confidence            479999999999999999999999999999875431     121 11222235688999999999965443 333 5667


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE-ecCCCCCC-CC---cccccCCceEEcCCCCCCCHHHH
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL-DVFENEPD-VP---EQLFALDNVVLSPHSAVFTPESF  302 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l-DV~~~EP~-~~---~~L~~~~nvilTPHia~~t~~~~  302 (330)
                      ..+++++++++++.-+.   . ..+++........+. =++..|.. ..   ..|+.-.++++||+-.+ +.+..
T Consensus        79 ~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~-~~~~~  148 (279)
T PRK07417         79 PALPPEAIVTDVGSVKA---P-IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT-DLNAL  148 (279)
T ss_pred             HhCCCCcEEEeCcchHH---H-HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC-CHHHH
Confidence            77899999999987543   2 233332221111111 12222211 00   13777889999997543 34433

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.89  E-value=1e-08  Score=96.53  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------C------------CCCCCCHHHHhhcC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------T------------YPFYPDVCELAANS  210 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~ell~~a  210 (330)
                      ++|||||+|.||..+|+.+...|++|++||+++....                +            .....+..+.++.|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            6899999999999999999999999999998764310                0            01122223568999


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHc
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~  261 (330)
                      |+|+.|+|..++.+..+-++..+.++++++|+ |+|.-.   ...+.+.+..
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~  133 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR  133 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence            99999999999888777677777899999886 776654   4456666543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.88  E-value=6.7e-09  Score=98.52  Aligned_cols=83  Identities=24%  Similarity=0.323  Sum_probs=69.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh-cC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL-AL  235 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~-~m  235 (330)
                      .+++|||||+|.||+.+|++|...|++|.+|+|+..        .++.++++++|+|++++|. +..+.+++ .... .+
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~   72 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL   72 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence            467999999999999999999999999999998753        4688999999999999997 47777763 2323 47


Q ss_pred             CCCcEEEEcCCCcc
Q 020160          236 GKKGVIINVGRGAI  249 (330)
Q Consensus       236 k~gailIN~~rg~~  249 (330)
                      +++.++|++++|-.
T Consensus        73 ~~~~ivi~~s~gi~   86 (308)
T PRK14619         73 PPETIIVTATKGLD   86 (308)
T ss_pred             CCCcEEEEeCCccc
Confidence            88999999988543

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.87  E-value=4.6e-09  Score=104.93  Aligned_cols=115  Identities=22%  Similarity=0.243  Sum_probs=92.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C---C--CCCCCCHHHHh---hcCCEEEEeccCCcccccc
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V---T--YPFYPDVCELA---ANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~---~--~~~~~~l~ell---~~aDvV~l~~P~t~~t~~l  226 (330)
                      .|||||+|.||+.+|++|...|++|.+|+|++...     .   +  .....++.++.   +++|+|++++|..+.++.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            48999999999999999999999999999986532     1   1  22345777766   4699999999998888888


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE  275 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  275 (330)
                      + .+.+..+++|.++||++....-|...+.+.+.+..+.....=|...+
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            7 46778899999999999999999999999999888863333344443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02712 arogenate dehydrogenase

Probab=98.84  E-value=1.5e-08  Score=105.41  Aligned_cols=103  Identities=21%  Similarity=0.373  Sum_probs=75.9

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHh-hcCCEEEEeccCCccccccccHH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELA-ANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      -+.++|||||+|.||+.+|+.++.+|++|.+++++....    .+.....++++++ .++|+|++|+|. ..+..++..-
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence            455799999999999999999999999999999874321    1333455778866 569999999996 4677777654


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCL  259 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL  259 (330)
                      .+..++++++++|+++-+..--+++.+.+
T Consensus       129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l  157 (667)
T PLN02712        129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYL  157 (667)
T ss_pred             hhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence            34679999999999765522223344444

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.83  E-value=2.1e-08  Score=95.00  Aligned_cols=141  Identities=19%  Similarity=0.297  Sum_probs=90.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--CCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTY--PFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      ..++|+|||+|.||..+|+.++..|.  +|.++++++...     .+.  ....++++.+++||+|++++|... +..++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~   83 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA   83 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH
Confidence            34789999999999999999998885  899999876421     121  123567788999999999999643 33333


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec---CCCC---CCC-CcccccCCceEEcCCCCCCCHH
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV---FENE---PDV-PEQLFALDNVVLSPHSAVFTPE  300 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV---~~~E---P~~-~~~L~~~~nvilTPHia~~t~~  300 (330)
                       ++....++++.++++++..+.--.+++.+.+.. .+.  .+..   +..|   |.. ..+|+.-.++++||+-++ +.+
T Consensus        84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~  158 (307)
T PRK07502         84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPA  158 (307)
T ss_pred             -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHH
Confidence             455667899999999977542222233333222 221  2332   2222   111 125777788999996543 444


Q ss_pred             HHH
Q 020160          301 SFK  303 (330)
Q Consensus       301 ~~~  303 (330)
                      +..
T Consensus       159 ~~~  161 (307)
T PRK07502        159 AVA  161 (307)
T ss_pred             HHH
Confidence            443

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.80  E-value=1.4e-08  Score=96.58  Aligned_cols=92  Identities=24%  Similarity=0.267  Sum_probs=68.4

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC-CC-----CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-KP-----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~-~~-----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      |+||+|||||+|+||+++|+.|+.+|++|+++++.. ..     ..+.. ..+..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            579999999999999999999999999987654432 22     11332 34688899999999999996533 334445


Q ss_pred             HHHhcCCCCcEEEEcCCCccc
Q 020160          230 QVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~v  250 (330)
                      +....++++. +|.++-|--+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6778888886 7888777543

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.79  E-value=1.6e-08  Score=100.16  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=90.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCC----------------CCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYP----------------FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~----------------~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|||||+|.||..+|..+.. |++|++||+++....    +..                ...+..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            789999999999999999877 799999999875411    111                12233457899999999999


Q ss_pred             CCc------ccccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCceE-EEEecCCCCCCCCc----cc
Q 020160          219 LTD------QTHHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCL-LR--GEIGG-AGLDVFENEPDVPE----QL  282 (330)
Q Consensus       219 ~t~------~t~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL-~~--g~i~g-a~lDV~~~EP~~~~----~L  282 (330)
                      ...      +.+.++.  ....+.+++|.++|+.|.-.+-..+.++..+ ++  |...+ ...=+|.+||..+.    .+
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~  165 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL  165 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence            763      3344442  4567889999999999998887777654444 33  22211 11114678887543    47


Q ss_pred             ccCCceEE
Q 020160          283 FALDNVVL  290 (330)
Q Consensus       283 ~~~~nvil  290 (330)
                      .+.|+++.
T Consensus       166 ~~~~riv~  173 (425)
T PRK15182        166 TNIKKITS  173 (425)
T ss_pred             cCCCeEEE
Confidence            77788843

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.79  E-value=3.6e-08  Score=95.57  Aligned_cols=136  Identities=23%  Similarity=0.253  Sum_probs=90.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC----CCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP----FYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|+|||+|.||+++|+.++..|++|.++++++....     +..    ...++++++++||+|++|+|.. .+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence            4799999999999999999999998888877654311     111    1346788899999999999974 5666653 


Q ss_pred             HHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC----------cccccCCceEEcCCCCCCC
Q 020160          230 QVLL-ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP----------EQLFALDNVVLSPHSAVFT  298 (330)
Q Consensus       230 ~~l~-~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~----------~~L~~~~nvilTPHia~~t  298 (330)
                      +... .+++++++++++.-+.-..+++.+.+.. ...  .++.+   |...          ..|+.....++||+-.. +
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~~-~  151 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDHT-D  151 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCCC-C
Confidence            3444 4889999999988765333344333221 222  23322   3221          24777788999996433 3


Q ss_pred             HHHHH
Q 020160          299 PESFK  303 (330)
Q Consensus       299 ~~~~~  303 (330)
                      .+..+
T Consensus       152 ~~~~~  156 (359)
T PRK06545        152 PDAVA  156 (359)
T ss_pred             HHHHH
Confidence            44443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.78  E-value=8.6e-08  Score=93.45  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=70.4

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL  235 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m  235 (330)
                      ..++|+||| +|.||+.+|+.|+..|+.|.+|+++..        .+.++++++||+|++|+|.... ..++ ++... +
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------~~~~~~~~~aDlVilavP~~~~-~~~~-~~l~~-l  165 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------DRAEDILADAGMVIVSVPIHLT-EEVI-ARLPP-L  165 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------hhHHHHHhcCCEEEEeCcHHHH-HHHH-HHHhC-C
Confidence            458999999 999999999999999999999998531        3677889999999999997753 4444 34444 8


Q ss_pred             CCCcEEEEcCCCcccCHHHHHH
Q 020160          236 GKKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       236 k~gailIN~~rg~~vd~~aL~~  257 (330)
                      ++|++++++|+.+..-..++.+
T Consensus       166 ~~~~iv~Dv~SvK~~~~~~~~~  187 (374)
T PRK11199        166 PEDCILVDLTSVKNAPLQAMLA  187 (374)
T ss_pred             CCCcEEEECCCccHHHHHHHHH
Confidence            9999999998755333334443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.78  E-value=1.2e-07  Score=91.91  Aligned_cols=121  Identities=20%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEA-FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      +...||+|||+ |.||+.+|+.++. +|.+|+++|+...      ...++++.+++||+|++|+|.... ..++ ++...
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~~~-~~~l-~~l~~   73 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIRHT-AALI-EEYVA   73 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHHHH-HHHH-HHHhh
Confidence            35679999999 9999999999995 5899999998521      134678889999999999997643 3343 23333


Q ss_pred             ---cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC---cccccCCceEEcCC
Q 020160          234 ---ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP---EQLFALDNVVLSPH  293 (330)
Q Consensus       234 ---~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~---~~L~~~~nvilTPH  293 (330)
                         .+++++++++++.-+-    ...+++....     .++...-|.-.   ..++...++++||.
T Consensus        74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             hhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence               4799999999988652    2222222221     13445556421   25788888999996

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.77  E-value=5.4e-08  Score=91.02  Aligned_cols=139  Identities=25%  Similarity=0.330  Sum_probs=91.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCCCC--CCCH-HHHhhcCCEEEEeccCCccccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYPF--YPDV-CELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~--~~~l-~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      -++|+|+|+|.||+.+|+.++..|+.|.++++.....       .+...  ..+. .+.+..||+|++++|-. .|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            4789999999999999999999999885555444321       12211  1222 56788899999999975 444443


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC----CcccccCCceEEcCCCCCCCHHHHH
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV----PEQLFALDNVVLSPHSAVFTPESFK  303 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----~~~L~~~~nvilTPHia~~t~~~~~  303 (330)
                       ++....+|+|+++++++.-+---.++..+.+.++.      .+...-|.-    ..+++....+|+||.-... .+...
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~-~~~~~  153 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE-KEWVE  153 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC-HHHHH
Confidence             45556899999999998866444444444432211      333445542    2368888999999954333 34333


Q ss_pred             HH
Q 020160          304 DV  305 (330)
Q Consensus       304 ~~  305 (330)
                      ++
T Consensus       154 ~~  155 (279)
T COG0287         154 EV  155 (279)
T ss_pred             HH
Confidence            33

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.76  E-value=5.5e-08  Score=96.08  Aligned_cols=143  Identities=19%  Similarity=0.214  Sum_probs=93.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC--CCCCCHHHHh---------------hcCCEEEEec
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY--PFYPDVCELA---------------ANSDVLIICC  217 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~--~~~~~l~ell---------------~~aDvV~l~~  217 (330)
                      ++|+|||+|.||..+|..|...|++|++||+++....    +.  .....+++++               +.||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            6899999999999999999999999999998765321    11  1123455443               3799999999


Q ss_pred             cCC------ccccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce-------EEEEe---cCCCCCCCC
Q 020160          218 ALT------DQTHHLI--NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG-------GAGLD---VFENEPDVP  279 (330)
Q Consensus       218 P~t------~~t~~li--~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~-------ga~lD---V~~~EP~~~  279 (330)
                      |..      ++...+.  -......+++|+++|+.|.-..-..+.+...+.+....       |.+.|   ++.+|-..+
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~  163 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLP  163 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCC
Confidence            964      1222222  14567778999999999998877777777767653221       11223   455555433


Q ss_pred             c----ccccCCceEEcCCCCCCCHHHHHHHH
Q 020160          280 E----QLFALDNVVLSPHSAVFTPESFKDVC  306 (330)
Q Consensus       280 ~----~L~~~~nvilTPHia~~t~~~~~~~~  306 (330)
                      .    .+...+.++     ||.+.++.+++.
T Consensus       164 G~~~~~~~~~~~vv-----gG~~~~~~~~~~  189 (415)
T PRK11064        164 GQVMVELIKNDRVI-----GGMTPVCSARAS  189 (415)
T ss_pred             CChhhhhcCCCEEE-----EeCCHHHHHHHH
Confidence            2    345555553     565666555443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.74  E-value=3.4e-08  Score=92.79  Aligned_cols=110  Identities=14%  Similarity=0.141  Sum_probs=80.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------C-----------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------T-----------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------~-----------------~~~~~~l~ell~~  209 (330)
                      ++|+|||+|.||..+|..+...|++|++||+++....            +                 .....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            5899999999999999999999999999998754311            0                 1123567789999


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVF  272 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  272 (330)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|...   ...+.+.++. .-.-.++..|
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence            99999999988766554444566778999876 7887744   4556665533 2223466666

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.74  E-value=4.4e-08  Score=92.07  Aligned_cols=80  Identities=24%  Similarity=0.366  Sum_probs=67.7

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||+++|||.| .||+.+|.+|...|++|++|++..         .++.++.++||+|+++++..+    ++....
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~~----~v~~~~  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRPR----LIDADW  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCChh----cccHhh
Confidence            456899999999996 999999999999999999997653         278999999999999998653    455443


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|+|+++||+|--.
T Consensus       221 ---ik~GaiVIDvgin~  234 (301)
T PRK14194        221 ---LKPGAVVIDVGINR  234 (301)
T ss_pred             ---ccCCcEEEEecccc
Confidence               89999999998644

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.72  E-value=1.8e-08  Score=98.78  Aligned_cols=96  Identities=23%  Similarity=0.271  Sum_probs=72.0

Q ss_pred             CCCCCCCCCC-ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC------CC-----CCCCCCCCCHHHHhhcC
Q 020160          143 LWPINAEFPL-GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK------KP-----SVTYPFYPDVCELAANS  210 (330)
Q Consensus       143 ~W~~~~~~~~-~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~------~~-----~~~~~~~~~l~ell~~a  210 (330)
                      -|.+. .++. -..|+||||+|||+|++|++-|..|+..|.+|++--|..      +.     ..++. ..+++|++++|
T Consensus        21 ~~~r~-ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~A   98 (487)
T PRK05225         21 FMDRD-EFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQA   98 (487)
T ss_pred             ecchh-hccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhC
Confidence            36443 3433 246999999999999999988877888888777433321      11     12333 46899999999


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVII  242 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailI  242 (330)
                      |+|++.+|.+ . ++.+.++.++.||+|+.|.
T Consensus        99 DvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225         99 DLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             CEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence            9999999999 3 6777799999999999875

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.72  E-value=1.1e-07  Score=87.99  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=75.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC----EEEEE-CCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC----CVSYN-SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++|||||+|.||.++++.|...|+    +|+++ +|++...     .+.....+..+++++||+|++++| .+..+.++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~   79 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT   79 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence            479999999999999999998887    88888 8765432     234445678888999999999996 556666653


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                       +....++++.++|++.-|  +..+.+.+.+..
T Consensus        80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             -HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence             455667889999988665  466666665543

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.70  E-value=1.3e-07  Score=88.27  Aligned_cols=127  Identities=19%  Similarity=0.276  Sum_probs=80.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCCC-CCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTYP-FYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++|+|||+|.||+.+|+.|+..|.  +|.++++++...     .+.. ...+.+++. +||+|++|+|.....+ ++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~-~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIE-IL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHH-HH-HH
Confidence            479999999999999999998785  788999875431     1221 234666765 5999999999764433 33 45


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC---C---CCCC-cccccCCceEEcCCC
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN---E---PDVP-EQLFALDNVVLSPHS  294 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~---E---P~~~-~~L~~~~nvilTPHi  294 (330)
                      ..+ ++++++++++|.-    ...+.+.+.+.. .+..++....   |   |... ..+++-..++++|.-
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~  142 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE  142 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence            556 8899999997552    344555554421 1112333222   1   2111 136666678888853

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.66  E-value=2.8e-07  Score=86.55  Aligned_cols=137  Identities=16%  Similarity=0.210  Sum_probs=90.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------------CCCCCCCHHHHhh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------------TYPFYPDVCELAA  208 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~ell~  208 (330)
                      ++|+|||.|.||..+|..+...|.+|+.+|++++...                              ......++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998754200                              0112457888899


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCce
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV  288 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nv  288 (330)
                      .||+|+.++|...+.+.-+-++..+.++++++++..+++  +....+.+.+.... ...++-.       ..|.+.++.+
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~lv  153 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNTA  153 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCeE
Confidence            999999999976554443334566678888888543333  34456666654322 2233321       2345567888


Q ss_pred             EEcCCCCCCCHHHHHHHH
Q 020160          289 VLSPHSAVFTPESFKDVC  306 (330)
Q Consensus       289 ilTPHia~~t~~~~~~~~  306 (330)
                      .+.|+-. .+.++.+.+.
T Consensus       154 evv~~~~-t~~~~~~~~~  170 (287)
T PRK08293        154 EIMGHPG-TDPEVFDTVV  170 (287)
T ss_pred             EEeCCCC-CCHHHHHHHH
Confidence            8888644 3444444443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.66  E-value=1.6e-07  Score=89.59  Aligned_cols=101  Identities=15%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------C---------CCCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------V---------TYPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~---------~~~~~~~l~ell~~aDvV  213 (330)
                      ++|||||.|.||..+|..+...|++|..||++++..                .         ......++++.++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            689999999999999999999999999999875421                0         012346788999999999


Q ss_pred             EEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      +-++|.+.+.+.-+-++.-+.++++++| .++..+ +...++.+.++.
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~  133 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH  133 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence            9999999998887778888889999854 444433 466777777743

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.65  E-value=1.9e-07  Score=92.06  Aligned_cols=131  Identities=21%  Similarity=0.235  Sum_probs=87.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------T-YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~ell~~aDvV  213 (330)
                      ++|||||+|.||..+|..|...|++|++||+++....                        + .....++.+++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            4799999999999999999999999999998764210                        1 12234677889999999


Q ss_pred             EEeccCCccc------ccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHH-HHHc--CCceEEEEec---CCCCCCCC
Q 020160          214 IICCALTDQT------HHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVG-CLLR--GEIGGAGLDV---FENEPDVP  279 (330)
Q Consensus       214 ~l~~P~t~~t------~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~-aL~~--g~i~ga~lDV---~~~EP~~~  279 (330)
                      ++|+|.....      ..+..  ....+.+++|.++|+.|.-.+=..+.+.. .+++  |..  .+.|.   +.+|...+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~--~~~d~~v~~~Pe~~~~  158 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK--LGEDFYLAYNPEFLRE  158 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC--CCCCceEEECCCcCCC
Confidence            9999965431      11211  34566789999999998755555566654 4444  211  12332   24444332


Q ss_pred             c----ccccCCceEEc
Q 020160          280 E----QLFALDNVVLS  291 (330)
Q Consensus       280 ~----~L~~~~nvilT  291 (330)
                      .    .++..+.+++.
T Consensus       159 G~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       159 GNAVHDLLNPDRIVGG  174 (411)
T ss_pred             CChhhhhcCCCEEEEe
Confidence            2    35666777765

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.65  E-value=4.5e-08  Score=95.26  Aligned_cols=91  Identities=19%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCC---C---CCCHHHHhhcCCEEEEeccCC-c
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYP---F---YPDVCELAANSDVLIICCALT-D  221 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~---~---~~~l~ell~~aDvV~l~~P~t-~  221 (330)
                      .+.++++.|+|+|.+|+.+++.++.+|++|.++|+++...      .+..   .   ..++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            3678899999999999999999999999999999875321      1110   1   134677889999999998653 2


Q ss_pred             cccccccHHHHhcCCCCcEEEEcC
Q 020160          222 QTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            345688999999999999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.65  E-value=2.5e-08  Score=85.18  Aligned_cols=86  Identities=21%  Similarity=0.286  Sum_probs=62.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      |+||+|+|||||.-|++-|..|+..|.+|++-.+...+      ..++. ..+..|..++||+|++.+|...+ ..+..+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEVQ-PEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence            67999999999999999999999999999887776552      12433 45899999999999999996544 345667


Q ss_pred             HHHhcCCCCcEEEE
Q 020160          230 QVLLALGKKGVIIN  243 (330)
Q Consensus       230 ~~l~~mk~gailIN  243 (330)
                      +....||+|..|+=
T Consensus        80 ~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   80 EIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHS-TT-EEEE
T ss_pred             HHHhhCCCCCEEEe
Confidence            88889999998764

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.64  E-value=1.7e-08  Score=78.78  Aligned_cols=85  Identities=28%  Similarity=0.411  Sum_probs=62.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCC---CEEE-EECCCCCCCC------CCCCCC-CHHHHhhcCCEEEEeccCCcccccccc
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFG---CCVS-YNSRNKKPSV------TYPFYP-DVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G---~~V~-~~~~~~~~~~------~~~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ||||||+|+||+++++.+...|   .+|. +++|+++...      +..... +..+++++||+|++++|.. ....++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence            7999999999999999999999   8998 5588775421      222233 7899999999999999854 333342 


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 020160          229 KQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg  247 (330)
                      .+. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            233 666789999998644

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.63  E-value=1.9e-07  Score=87.88  Aligned_cols=109  Identities=18%  Similarity=0.237  Sum_probs=77.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------C-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------T-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~ell~~  209 (330)
                      ++|+|||.|.||..+|..+...|++|.+||++++...                +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            6899999999999999999999999999998754210                1             11234554 5789


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE  273 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~  273 (330)
                      ||+|+.++|...+.+..+-++..+.++++++++ |+|.-.   ...+.+.+.. .++  .++-.|.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~~r~--~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRPERF--IGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCcccE--EEeeccC
Confidence            999999999877655444356777889999988 666544   3467776632 233  3455555

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.62  E-value=8.4e-08  Score=90.81  Aligned_cols=106  Identities=21%  Similarity=0.318  Sum_probs=84.8

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      -+.||++.|.|||..|+-+|++++++|++|++....|-..     .++. ...++|....+|+++.++    .++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~T----GnkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTAT----GNKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEcc----CCcCccCH
Confidence            3799999999999999999999999999999987766442     2333 457899999999998764    56789999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHHH-HHcCCce
Q 020160          230 QVLLALGKKGVIINVGRGAI-IDEKEMVGC-LLRGEIG  265 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~-vd~~aL~~a-L~~g~i~  265 (330)
                      +.|..||+|+++-|.|.-.+ ||...|.+. ++...++
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            99999999999999997666 666665532 3333444

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.5e-07  Score=84.67  Aligned_cols=112  Identities=21%  Similarity=0.239  Sum_probs=95.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHH---hhcCCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCEL---AANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el---l~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      +++|+||+|+||..+++++..-|.+|++||+++...     .+.....|++++   +...-+|.+++|....|...|+ +
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence            579999999999999999999999999999987642     244445677776   4567899999999988887764 6


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE  273 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  273 (330)
                      .-..|.+|-++|+-+....-|....++.|.++.|.  .+||=.
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT  120 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT  120 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence            77889999999999999999999999999999995  789843

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.61  E-value=1.7e-07  Score=87.54  Aligned_cols=81  Identities=19%  Similarity=0.304  Sum_probs=68.8

Q ss_pred             ccccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||.|.+ |+.+|..|...|++|+.+...         ..++.+.+++||+|+++++    +.++++.  
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~--  217 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA--  217 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence            44689999999999999 999999999999999887542         2468899999999999998    3467887  


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 020160          232 LLALGKKGVIINVGRGAI  249 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~  249 (330)
                       +.+|+|+++||+|.-.+
T Consensus       218 -~~ik~gavVIDVGin~~  234 (285)
T PRK14189        218 -DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             -HHcCCCCEEEEcccccc
Confidence             56899999999997553

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.58  E-value=4.7e-07  Score=84.75  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=72.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~  209 (330)
                      ++|+|||+|.||..+|..+...|++|+++|+++...                .+             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            579999999999999999999999999999765432                01             01123444 4799


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      ||+|+.++|...+.+.-+-++..+.++++++++....|  +....+.+.+.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~  131 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK  131 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence            99999999977665543435566778999988444333  55667888774

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.57  E-value=3e-07  Score=79.75  Aligned_cols=113  Identities=23%  Similarity=0.322  Sum_probs=84.3

Q ss_pred             cccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          154 SKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .++.|+++.|||.|.+ |..+|+.|...|.+|...+|+.         .++.+.+.++|+|+.+++..   + +|..+. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence            3589999999999996 8889999999999998888752         46888999999999998754   2 677764 


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~  299 (330)
                        ++++.++||+|...-+|       ..++++.   -|| ..|     ...+. ...+||=-||...
T Consensus       106 --~~~~~viIDla~prdvd-------~~~~~~~---G~~-d~~-----~~~~~-~~~~~~~pggvgp  153 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD-------KSGGKLV---GDV-DFE-----SAKEK-ASAITPVPGGVGP  153 (168)
T ss_pred             --ccCCeEEEEccCCCccc-------ccCCCee---CCc-CHH-----HHHhh-ccCcCCCCCcChH
Confidence              57899999999988887       4555654   333 111     11222 4457776677654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.56  E-value=3e-07  Score=86.53  Aligned_cols=79  Identities=20%  Similarity=0.377  Sum_probs=66.3

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEEC-CCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNS-RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .++.||+++||| .|.||+.+|.+|...|+.|++|+ ++.          ++++++++||+|+++++...    ++.+..
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence            468999999999 99999999999999999999995 432          57899999999999998654    344433


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 020160          232 LLALGKKGVIINVGRGAI  249 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~  249 (330)
                         +|+|+++||+|--.+
T Consensus       220 ---lk~GavVIDvGin~~  234 (296)
T PRK14188        220 ---IKPGATVIDVGINRI  234 (296)
T ss_pred             ---ecCCCEEEEcCCccc
Confidence               899999999986543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.55  E-value=3.1e-07  Score=81.98  Aligned_cols=105  Identities=22%  Similarity=0.268  Sum_probs=78.5

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCCCCHHHHhh-cCCEEEEeccCCccccc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFYPDVCELAA-NSDVLIICCALTDQTHH  225 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~  225 (330)
                      +.+++||+++|+|+|+||+.+|++|..+|++|+++|+++....      +.. ..+.++++. +||+++.|..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----cc
Confidence            3468999999999999999999999999999999998764311      222 123455554 7999886654     35


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +|+++.++.|+ ..+++.-+-+.+-| ..-.+.|++..+.
T Consensus        97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            78888888887 45788888887766 5566777777774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.55  E-value=3e-07  Score=77.87  Aligned_cols=105  Identities=22%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC------CC----CCCCCHHHHhhcCCEEEEeccCCcc-
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV------TY----PFYPDVCELAANSDVLIICCALTDQ-  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~ell~~aDvV~l~~P~t~~-  222 (330)
                      ++.+++++|+|+|.||+.+++.+...| .+|.+++++++...      +.    ....+..++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            356899999999999999999999886 78999998764321      11    1245677788999999999998764 


Q ss_pred             ccc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          223 THH-LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       223 t~~-li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      ... .+..   ..++++.+++|++..+...  .+.+.+++..+
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence            222 2332   2368999999998765443  77777777654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.54  E-value=3.8e-07  Score=85.32  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=74.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCC-------CCCCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~-------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+++|||||+|.||+++|+.|...|    .+|.+++|+....       .+.....+..+++.+||+|++++|.. ....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence            3579999999999999999999887    6889999865321       13334567888899999999999954 3344


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      .+ .+....++++.++|++.-|  +..+.+.+.+.
T Consensus        81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~  112 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ  112 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            44 4455567889999998655  35666666554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.53  E-value=7.7e-07  Score=83.73  Aligned_cols=112  Identities=17%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------------CC-------------CCCCCHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------------TY-------------PFYPDVCEL  206 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~el  206 (330)
                      ++|+|||.|.||..+|..+...|++|+.+|+++....                   +.             ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            5899999999999999999999999999998764210                   00             112234 56


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCC
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENE  275 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~E  275 (330)
                      +++||+|+.++|...+.+.-+-++.-+.++++++|++...|  +....+.+.+.. .++  .++..|.+-
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~--ig~hf~~P~  148 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERKDRF--IGMHWFNPA  148 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccE--EEEecCCCc
Confidence            78999999999977654433334455668889999877666  455677777643 233  455544443

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.51  E-value=3.5e-07  Score=87.49  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=75.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C--------C------CCCCCCHHHHhhcCCEEEEecc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V--------T------YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~--------~------~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .++|+|||+|.||..+|.+|...|++|.+|+|+++..     .        +      .....++.+.++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999975421     0        1      1124578888899999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRG-AIID--EKEMVGCLLR  261 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg-~~vd--~~aL~~aL~~  261 (330)
                      ... +     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            762 2     5666889999999999997 3332  4456666654

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.49  E-value=2e-07  Score=87.09  Aligned_cols=99  Identities=16%  Similarity=0.228  Sum_probs=75.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC----EEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC----CVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      .++|||||+|+||+++++.+...|+    +|++++|++...      .+.....+..+++.+||+|++++|. ...+.++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence            3589999999999999999988774    689999876531      2333345777899999999999994 6666665


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                       .+....++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence             3455557888999999877  55666766664

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.48  E-value=4.9e-07  Score=91.33  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=78.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------T-YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~ell~~aDvV  213 (330)
                      ++|||||+|.||..+|..+...|++|++||+++....                        + .....++.+.+++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999998764310                        1 23356788899999999


Q ss_pred             EEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                      +.++|...+.+..+-++.-+.++++++| .++..++ ....+.+.+.....  ..++-+.+
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~~r--~~~~hP~n  141 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHPER--LFVAHPYN  141 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCcce--EEEEecCC
Confidence            9999988766654334455567777654 4444443 35577776644322  34554443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.47  E-value=3.6e-07  Score=85.26  Aligned_cols=104  Identities=21%  Similarity=0.275  Sum_probs=77.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHh--CCCEEE-EECCCCCCCC------C-CCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA--FGCCVS-YNSRNKKPSV------T-YPFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      ..++|||||+|.||+.+++.+..  .++++. +++++++...      + ...+.++++++.++|+|++|+|.....+  
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e--   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRA--   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHH--
Confidence            35799999999999999999986  478875 6787654321      2 2346789999999999999999653322  


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                         -....++.|.-++..++|.+.+.++|.++.+++...
T Consensus        83 ---~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 ---IVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             ---HHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence               123335667667778899888889999988886543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.47  E-value=1.2e-06  Score=83.21  Aligned_cols=136  Identities=13%  Similarity=0.127  Sum_probs=83.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------CCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTY-------------PFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~-------------~~~~~l~ell~~  209 (330)
                      ++|+|||.|.||..+|..+...|++|++||+++...                .+.             ....++.+.++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999976310                111             234578888999


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceE
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVV  289 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvi  289 (330)
                      ||+|+.++|...+.+..+-.+.-+..++..++. .+.. ......+.+.+.....  ...|-+-+ |.     +-.+=+.
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~~--~~~~hp~~-p~-----~~~~lve  152 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAGRER--CLVAHPIN-PP-----YLIPVVE  152 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCCccc--EEEEecCC-Cc-----ccCceEE
Confidence            999999999775444332233323344455444 3333 3346667777754332  34444332 21     1113366


Q ss_pred             EcCCCCCCCHHHHHHH
Q 020160          290 LSPHSAVFTPESFKDV  305 (330)
Q Consensus       290 lTPHia~~t~~~~~~~  305 (330)
                      ++|+-++ +.++.++.
T Consensus       153 iv~~~~t-~~~~~~~~  167 (308)
T PRK06129        153 VVPAPWT-APATLARA  167 (308)
T ss_pred             EeCCCCC-CHHHHHHH
Confidence            8887443 34444443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.46  E-value=5.4e-07  Score=84.77  Aligned_cols=112  Identities=20%  Similarity=0.268  Sum_probs=79.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------CC-------------CCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------TY-------------PFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~ell~~  209 (330)
                      ++|||||.|.||..+|..+...|++|+.||+++....                +.             ....++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            4899999999999999999999999999998875310                11             123466 55899


Q ss_pred             CCEEEEeccCCccccccccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLAL-GKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENE  275 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~m-k~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~E  275 (330)
                      ||+|+-++|.+.+.+.-+-.+.-+.+ +++++|++.+.+-.+  .++..++.. .++  .++..|.+-
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~~r~--~g~hf~~P~  148 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRPGRV--LGLHFFNPV  148 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCccE--EEEecCCCc
Confidence            99999999999888776654444444 789999887665444  444444432 233  466666643

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.45  E-value=8.8e-07  Score=89.67  Aligned_cols=112  Identities=16%  Similarity=0.252  Sum_probs=83.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~  209 (330)
                      ++|||||+|.||+.+|..+...|++|+.||++++..                .+             .....++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            689999999999999999999999999999887531                11             122356655 569


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENEP  276 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EP  276 (330)
                      ||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-++   .++..++.. .++  .++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence            99999999999888876655555567899999 59987665   366666643 333  4677777555

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.44  E-value=8.8e-07  Score=93.55  Aligned_cols=137  Identities=20%  Similarity=0.274  Sum_probs=92.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|||||+|.||.++|+.++..|  .+|.+++++....     .+..  ...++++.++++|+|++++|.. .++.++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  4899999876531     1221  2346788899999999999964 444443 3


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC----------CcccccCCceEEcCCCCCCCH
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV----------PEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~----------~~~L~~~~nvilTPHia~~t~  299 (330)
                      +..+.++++.++++++..+-.-.+.+.+.+....     ..+...-|..          ...|+.-.+++++|+-.+ +.
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~-~~  155 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET-DP  155 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC-CH
Confidence            4455678899999998755333445555553321     2233333421          225888889999996543 34


Q ss_pred             HHHH
Q 020160          300 ESFK  303 (330)
Q Consensus       300 ~~~~  303 (330)
                      +..+
T Consensus       156 ~~~~  159 (735)
T PRK14806        156 AALA  159 (735)
T ss_pred             HHHH
Confidence            4333

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.43  E-value=6.7e-07  Score=84.80  Aligned_cols=99  Identities=11%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------C--------------CCCCCCHHHHhhcCCEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------T--------------YPFYPDVCELAANSDVLI  214 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~ell~~aDvV~  214 (330)
                      ++|+|||+|.||..+|..+...|++|++++++.....          +              .....++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            5899999999999999999999999999998653210          0              112346778899999999


Q ss_pred             EeccCCcc-ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          215 ICCALTDQ-THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       215 l~~P~t~~-t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      +++|...+ ...++ .+.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            99997654 33343 3333446777776533333  34567777764

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.42  E-value=9.2e-07  Score=82.65  Aligned_cols=80  Identities=21%  Similarity=0.395  Sum_probs=66.2

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||+++|||. |.+|+.+|.+|...|++|+.|...         ..++.+..++||+|+.+++...    ++....
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~~----~v~~~~  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRGH----FVTKEF  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCccc----cCCHHH
Confidence            45689999999999 999999999999999999988321         1378899999999999998653    355443


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|+|+++||+|--.
T Consensus       220 ---ik~GavVIDvgin~  233 (284)
T PRK14179        220 ---VKEGAVVIDVGMNR  233 (284)
T ss_pred             ---ccCCcEEEEeccee
Confidence               89999999998544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.41  E-value=3.5e-07  Score=86.85  Aligned_cols=90  Identities=20%  Similarity=0.290  Sum_probs=69.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V--------------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++|+|||+|.||..+|..|...|++|.+|++++...     .              +.....++++.++.||+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999875321     0              112245777889999999999996


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg~~v  250 (330)
                       ..++.++ .+..+.++++.++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             4556555 3456667889999999765443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.40  E-value=8e-07  Score=89.81  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=83.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~  209 (330)
                      ++|||||.|.||+.+|..+...|++|+.||++++..                .+             .....++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            579999999999999999999999999999886531                01             112346655 579


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD  277 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  277 (330)
                      ||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-++   ..+.+++.. .....++..|.+-|.
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            999999999988877765555556688888776 7766443   566776643 233467777776553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.37  E-value=2.7e-06  Score=83.39  Aligned_cols=124  Identities=16%  Similarity=0.106  Sum_probs=84.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------------------CCCC--CCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------------------TYPF--YPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------------------~~~~--~~~l~ell~~aDvV~l  215 (330)
                      ++|+|||+|.||..+|..+. .|++|++||+++....                     ....  ..+..+..+.||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            47999999999999997766 4999999998765310                     0111  1235677899999999


Q ss_pred             eccCCcccc-cccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc----cc
Q 020160          216 CCALTDQTH-HLIN--------KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE----QL  282 (330)
Q Consensus       216 ~~P~t~~t~-~li~--------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~----~L  282 (330)
                      |+|...+-+ +.++        ++... +++|.++|+.|.-.+=-.+.+.+.+.+..+      +|.+|...+.    .+
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~  152 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN  152 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence            999652211 1111        23344 799999999999888788888887765433      2466665433    35


Q ss_pred             ccCCceEE
Q 020160          283 FALDNVVL  290 (330)
Q Consensus       283 ~~~~nvil  290 (330)
                      ...|+|++
T Consensus       153 ~~p~rvv~  160 (388)
T PRK15057        153 LHPSRIVI  160 (388)
T ss_pred             cCCCEEEE
Confidence            66667654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.37  E-value=1.5e-07  Score=77.90  Aligned_cols=104  Identities=20%  Similarity=0.321  Sum_probs=60.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ...+|||||.|++|..+++.|...|+.|.. ++|+....      .+.....+++|++..+|++++++|.+ ....+ -+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence            457999999999999999999999999865 56665321      12233457889999999999999976 43433 23


Q ss_pred             HHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          230 QVLLA--LGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       230 ~~l~~--mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      +.-..  .++|.+++-|| |. ...+.|..+-+.|-+
T Consensus        87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~  121 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI  121 (127)
T ss_dssp             HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred             HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence            33333  68999999985 22 233344444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.36  E-value=2.6e-07  Score=83.15  Aligned_cols=128  Identities=14%  Similarity=0.147  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHH--HhCCCEEE-EECCC
Q 020160          114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRL--EAFGCCVS-YNSRN  190 (330)
Q Consensus       114 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l--~~~G~~V~-~~~~~  190 (330)
                      ....++|.+..++...|++.         .|.           ..++++|||+|.+|+.+++.+  ...|+++. ++|++
T Consensus        60 G~~~~gy~v~~l~~~~~~~l---------~~~-----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         60 GKRGVGYNVEELLEFIEKIL---------GLD-----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CCCCCCeeHHHHHHHHHHHh---------CCC-----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            34556788888888888764         121           246899999999999999863  36788876 46665


Q ss_pred             CCCCC----C--CCCCCCHHHHhhc--CCEEEEeccCCccc---cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160          191 KKPSV----T--YPFYPDVCELAAN--SDVLIICCALTDQT---HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCL  259 (330)
Q Consensus       191 ~~~~~----~--~~~~~~l~ell~~--aDvV~l~~P~t~~t---~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL  259 (330)
                      +....    +  .....++.+++++  .|.+++++|.....   +.+.......-+...++.+|+.+|.+|+.++|..+|
T Consensus       120 ~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l  199 (213)
T PRK05472        120 PEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVEL  199 (213)
T ss_pred             hhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHH
Confidence            43221    1  1123467787765  99999999987652   223233334446667899999999999999999988


Q ss_pred             Hc
Q 020160          260 LR  261 (330)
Q Consensus       260 ~~  261 (330)
                      ..
T Consensus       200 ~~  201 (213)
T PRK05472        200 QT  201 (213)
T ss_pred             HH
Confidence            64

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.34  E-value=1.8e-06  Score=81.38  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCC----------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPS----------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      |+.+|++|...|++|++||+++...          .+.....+..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            7899999999999999998875421          144556789999999999999999988888887 46889999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHc
Q 020160          240 VIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       240 ilIN~~rg~~vd~~aL~~aL~~  261 (330)
                      ++||+|.   ++.+.++..|+.
T Consensus       111 IVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             EEEECCC---CCHHHHHHHHHH
Confidence            9999966   567777777766

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.33  E-value=2.3e-06  Score=80.07  Aligned_cols=80  Identities=24%  Similarity=0.370  Sum_probs=67.3

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+.+.++.         .++.+.+++||+|+.+++..    +++.++ 
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~p----~~i~~~-  218 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGKP----GLVTKD-  218 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCCC----cccCHH-
Confidence            3468999999999998 99999999999999998887632         36889999999999999753    367765 


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                        .+|+|+++||+|--.
T Consensus       219 --~vk~gavVIDvGi~~  233 (286)
T PRK14175        219 --VVKEGAVIIDVGNTP  233 (286)
T ss_pred             --HcCCCcEEEEcCCCc
Confidence              468999999998654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.31  E-value=6.8e-07  Score=76.58  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=63.6

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------------CC------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------------VT------YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +|+|+|.|++|.++|..|...|.+|..|.|+++..             .+      .....++++.++.+|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999875310             01      112468999999999999999965


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      . .+.++ ++....++++..+|++..|=
T Consensus        81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 A-HREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence            3 34433 45667778899999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.30  E-value=1.2e-06  Score=80.85  Aligned_cols=98  Identities=16%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCE---EEEECCCCCCCC-------CCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCC---VSYNSRNKKPSV-------TYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~~~~~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++|||||+|+||+.+++.+...|..   +.+++|+.+...       +.....+..+++++||+|++++| .+....++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            3799999999999999999887754   467888654311       23345678889999999999999 345555543


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .  +. ++++.++|.+.  .-+..+.|.+.+..+
T Consensus        80 ~--l~-~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 A--LR-FRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             H--hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            2  32 57888999987  347788888877654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.28  E-value=2.7e-06  Score=75.67  Aligned_cols=86  Identities=23%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++++|+|.|+||+.+|+++...|++|.+-+++.....        ......+.++..+.+|+|++++|...... . .++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~-v-~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD-V-LAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh-H-HHH
Confidence            6899999999999999999999999988765544311        11223578899999999999999865433 2 255


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 020160          231 VLLALGKKGVIINVGRG  247 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg  247 (330)
                      ....+. |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            666565 8899998653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.28  E-value=3.8e-07  Score=76.21  Aligned_cols=93  Identities=25%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCCC------C-----CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPSV------T-----YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~~------~-----~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      +++|+++.|||.|.+|+.++..|...|++ |+.++|+.++..      +     ...+.++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999996 999999865311      1     11245677789999999999886533


Q ss_pred             ccccccHHHHhcCCCCc-EEEEcCCCccc
Q 020160          223 THHLINKQVLLALGKKG-VIINVGRGAII  250 (330)
Q Consensus       223 t~~li~~~~l~~mk~ga-ilIN~~rg~~v  250 (330)
                         .+.++.++..++.. ++++.+...-|
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i  114 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPRDI  114 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCCCC
Confidence               67788877665433 88888654333

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.28  E-value=1.5e-06  Score=80.83  Aligned_cols=89  Identities=18%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      +.||.+.|.|+|.+|+..|+.|++||.+|++....|-..     .++. ..+++|..++.|+++.+.    ..+.+|..+
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~~  286 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITGE  286 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence            789999999999999999999999999999887665432     1333 468999999999998753    567789999


Q ss_pred             HHhcCCCCcEEEEcCCCcc
Q 020160          231 VLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~  249 (330)
                      .|.+||.++++.|+|.-.+
T Consensus       287 H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHhCcCCcEEeccccccc
Confidence            9999999999999987554

>PRK07680 late competence protein ComER; Validated

Probab=98.27  E-value=1.7e-06  Score=80.65  Aligned_cols=98  Identities=14%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC----EEEEECCCCCCCC-------CCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC----CVSYNSRNKKPSV-------TYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      ++|||||+|.||+.+++.|...|.    +|.+++|+++...       +.....+..+++.+||+|++++|.. ....++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HHHHHH
Confidence            379999999999999999988883    7899999764311       2333457888899999999999733 345444


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                       ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             3455567888999999854  36777776654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.25  E-value=4.4e-06  Score=78.14  Aligned_cols=98  Identities=17%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCC-------C-CCCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPS-------V-TYPFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~-------~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      ++|+|||+|.||+.+++.+...|    .+|.+++++....       . ......+..+++.++|+|++++|.. ....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~-~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPL-AVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHH-HHHHH
Confidence            47999999999999999999887    6888888754221       1 1122357788899999999999943 34443


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      + .+....++++..+|.+.-|  +..+.|.+.+.
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            3 3344556778899998777  66778877764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.24  E-value=1.2e-05  Score=80.87  Aligned_cols=177  Identities=16%  Similarity=0.168  Sum_probs=105.3

Q ss_pred             CceEEEEcCCCCCCHHHHccCC-CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCc--h--------hhHHHHHHHHHH
Q 020160           58 SVKAIFSSAGAPVTAEILRLLP-EVRLVVATSAGLNHIDVVECRRRGVALANAGNVF--S--------EDVADYALGLLI  126 (330)
Q Consensus        58 ~~d~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~l~L  126 (330)
                      ++|+|+.-.  +.+.+-++.+. +--+|+...-..|.=-++++.+++|.+..-....  +        .++++.+=    
T Consensus        64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG----  137 (511)
T TIGR00561        64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG----  137 (511)
T ss_pred             cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH----
Confidence            467777422  23444456654 4445666555555445677888998887632111  1        13333322    


Q ss_pred             HHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC--
Q 020160          127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF--  199 (330)
Q Consensus       127 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~--  199 (330)
                        +|-+.+..+..  |++..-.....| .+.+.++.|+|+|.+|...++.++.+|.+|.+++++....     .+...  
T Consensus       138 --y~Avi~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~  212 (511)
T TIGR00561       138 --YRAIIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE  212 (511)
T ss_pred             --HHHHHHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence              22222211111  111100001122 4568999999999999999999999999999998876421     11110  


Q ss_pred             ---------------CCC----------HHHHhhcCCEEEEec--cCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          200 ---------------YPD----------VCELAANSDVLIICC--ALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       200 ---------------~~~----------l~ell~~aDvV~l~~--P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                                     ..+          +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||++-
T Consensus       213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence                           001          445578899998876  3322 235788999999999999999965

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.22  E-value=9.9e-06  Score=62.22  Aligned_cols=66  Identities=26%  Similarity=0.400  Sum_probs=55.1

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhC-CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAF-GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      .+.+++++|+|.|.+|+.+++.+... +.+|.++++                     |+++.+.+..    +.+.++...
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~~----~~~~~~~~~   74 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPAG----VPVLEEATA   74 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCCC----CCchHHHHH
Confidence            47899999999999999999999998 568888877                     9999887653    345455688


Q ss_pred             cCCCCcEEEEcC
Q 020160          234 ALGKKGVIINVG  245 (330)
Q Consensus       234 ~mk~gailIN~~  245 (330)
                      .+++++++++++
T Consensus        75 ~~~~~~~v~~~a   86 (86)
T cd05191          75 KINEGAVVIDLA   86 (86)
T ss_pred             hcCCCCEEEecC
Confidence            899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.21  E-value=2.5e-06  Score=85.22  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHHhhc---CCEEEEeccCCccccccccHHHHhcC
Q 020160          169 IGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCELAAN---SDVLIICCALTDQTHHLINKQVLLAL  235 (330)
Q Consensus       169 IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~li~~~~l~~m  235 (330)
                      ||+.+|++|...|++|.+|||++....          +.....+++++.+.   +|+|++++|..+.++.++ .+.++.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            799999999999999999999876421          23456789998875   899999999999999988 4688999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160          236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       236 k~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  276 (330)
                      .+|.++||.|....-|...+.+.+++..+.....=|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999888744444555443

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.18  E-value=1.2e-05  Score=75.87  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=94.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhh-cCCEEEEeccCCccccccccHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAA-NSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      -.+|||||+|++|+-+|+.+-..|+.|..++|+.-..    .+...+..+.++++ ++|+|.+|+.. ..++.++..-=+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence            4689999999999999999999999999999976332    24455677888775 49999998753 244444433335


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CceEEEEecCCCCCCCCcccccCCceEEcCCCC
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRG-EIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA  295 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia  295 (330)
                      +++|.|++++++-.-+....+++.+.|-+- .|. ..=-.|.++. .++....+|=|+.-=.++
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPks-vnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPKS-VNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCCc-CCCccccCceEEEEeecc
Confidence            668999999999888888888888888553 222 2222334331 334566677776655444

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.13  E-value=5.2e-06  Score=73.19  Aligned_cols=132  Identities=15%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CC-------------CCCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SV-------------TYPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~-------------~~~~~~~l~ell~~aDvV  213 (330)
                      |+|+|||+|.+|..+|..+...|++|+++|.+++.            +.             ......+.++.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            68999999999999999999999999999986542            00             011234677789999999


Q ss_pred             EEeccCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHH-HHHHHHcCCceEEEEe-cCCCCCCCCc---
Q 020160          214 IICCALTDQTHHLIN--------KQVLLALGKKGVIINVGRGAIIDEKE-MVGCLLRGEIGGAGLD-VFENEPDVPE---  280 (330)
Q Consensus       214 ~l~~P~t~~t~~li~--------~~~l~~mk~gailIN~~rg~~vd~~a-L~~aL~~g~i~ga~lD-V~~~EP~~~~---  280 (330)
                      ++|+|......+-.|        ....+.++++.++|.-|.-.+=-.+. +...|++....+.-++ +|.+|=..+.   
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            999985443333222        34566789999999999877655553 3344444322111111 2456654332   


Q ss_pred             -ccccCCceEE
Q 020160          281 -QLFALDNVVL  290 (330)
Q Consensus       281 -~L~~~~nvil  290 (330)
                       ++...|+||+
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence             4778888853

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.11  E-value=4.2e-05  Score=64.37  Aligned_cols=80  Identities=19%  Similarity=0.273  Sum_probs=66.5

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|+|-+ .+|+.+|.+|...|++|..++++.         .++++..++||+|+.+++..    ++|+.+.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence            457899999999965 679999999999999998887532         37889999999999998754    4577654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|||+++||++...
T Consensus        90 ---ikpGa~Vidvg~~~  103 (140)
T cd05212          90 ---IKPGATVINCSPTK  103 (140)
T ss_pred             ---cCCCCEEEEcCCCc
Confidence               78999999998755

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=1.5e-05  Score=74.82  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=65.9

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||.|. .|+++|..|...|++|+.+++.         ..++.+.+++||+|+.+++. +.   +++.+.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG~-~~---~v~~~~  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVGK-PE---LIKKDW  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccCC-CC---cCCHHH
Confidence            3468999999999998 9999999999999999988762         23688888999999999962 22   576644


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|+|++++|++-..
T Consensus       221 ---lk~gavViDvg~n~  234 (283)
T PRK14192        221 ---IKQGAVVVDAGFHP  234 (283)
T ss_pred             ---cCCCCEEEEEEEee
Confidence               78999999997544

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.08  E-value=2.1e-05  Score=67.59  Aligned_cols=81  Identities=25%  Similarity=0.400  Sum_probs=58.4

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.+....         .++++.+++||+|+.++.-    .++|..+ 
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G~----~~~i~~~-   96 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVGK----PNLIKAD-   96 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SSS----TT-B-GG-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeecc----ccccccc-
Confidence            4468999999999985 99999999999999998876532         4789999999999999853    3456654 


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 020160          232 LLALGKKGVIINVGRGAI  249 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~  249 (330)
                        .+|+|+++||+|.-..
T Consensus        97 --~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   97 --WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             --GS-TTEEEEE--CEEE
T ss_pred             --cccCCcEEEecCCccc
Confidence              5799999999987665

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=2.4e-05  Score=73.25  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=65.9

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+.+.+.         ..++.+.+++||+|+.+++..    +++..  
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~p----~~v~~--  218 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGKP----GFIPG--  218 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCCc----ccccH--
Confidence            3468999999999999 9999999999999999887653         236899999999999998533    24655  


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                       +.+|+|+++||+|--.
T Consensus       219 -~~vk~gavVIDvGin~  234 (285)
T PRK10792        219 -EWIKPGAIVIDVGINR  234 (285)
T ss_pred             -HHcCCCcEEEEccccc
Confidence             4578999999998533

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.06  E-value=7.6e-06  Score=75.80  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=67.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC---CEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG---CCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+++..      .+.....+.++++.++|+|++++|.. ..+.++. 
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~-   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS-   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence            58999999999999999999888   6889999976432      13334457788889999999999844 3333332 


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      +....+  +.++|.+.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            222223  46778776653  5666766664

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=1.4e-05  Score=74.49  Aligned_cols=80  Identities=19%  Similarity=0.294  Sum_probs=67.3

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.|+++.|+|.+ ..|+.+|..+..+|++|+.+.+..         .++.+.+++||+|+.+++..    +++.++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~  213 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM  213 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence            346899999999999 999999999999999998775432         36889999999999999633    5788776


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|||+++||+|-..
T Consensus       214 ---vk~GavVIDVgi~~  227 (279)
T PRK14178        214 ---VKPGATVIDVGINQ  227 (279)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               49999999998644

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=2.4e-05  Score=73.26  Aligned_cols=79  Identities=27%  Similarity=0.396  Sum_probs=65.6

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+.+...         ..++.+..++||+|++++--.    +++..+ 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~p----~~i~~~-  224 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGVK----HLIKAD-  224 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCCc----cccCHH-
Confidence            4468999999999999 9999999999999999887642         236889999999999987432    467665 


Q ss_pred             HhcCCCCcEEEEcCCC
Q 020160          232 LLALGKKGVIINVGRG  247 (330)
Q Consensus       232 l~~mk~gailIN~~rg  247 (330)
                        .+|+|+++||+|--
T Consensus       225 --~vk~gavVIDvGin  238 (287)
T PRK14176        225 --MVKEGAVIFDVGIT  238 (287)
T ss_pred             --HcCCCcEEEEeccc
Confidence              57899999999863

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.00  E-value=4.8e-06  Score=72.13  Aligned_cols=92  Identities=15%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CC-----C---------------------CCCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VT-----Y---------------------PFYPD  202 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~-----~---------------------~~~~~  202 (330)
                      ..+...++.|+|.|+.|+..++.++++|++|..++..+...     ..     .                     .+...
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            35778999999999999999999999999999988765320     00     0                     00124


Q ss_pred             HHHHhhcCCEEEEec-cCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          203 VCELAANSDVLIICC-ALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       203 l~ell~~aDvV~l~~-P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      +.+.++.+|+|+.++ -..+..-.++.++.++.||++++++++|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            677889999998644 3455677799999999999999999985

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=2.6e-05  Score=72.98  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=66.1

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-| .+|+.+|..|...|+.|+.+...         ..++.+.+++||+|+.+++.    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG~----p~~i~~~~  218 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVGK----PDLIKASM  218 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            446899999999999 99999999999999999887432         13578999999999999853    34677765


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGi~~  232 (285)
T PRK14191        219 ---VKKGAVVVDIGINR  232 (285)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               48999999998654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.00  E-value=7.4e-06  Score=73.94  Aligned_cols=88  Identities=19%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------CC---CCCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------TY---PFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+||| .|.||+.+|+.|...|.+|.+++|+++...             +.   ....+..+.++++|+|++++|...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            4799997 999999999999999999999988764311             11   012356778999999999999653


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          222 QTHHLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                       ...++ ++.-..++ +.++|++.-|--
T Consensus        81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~  105 (219)
T TIGR01915        81 -VLKTL-ESLRDELS-GKLVISPVVPLA  105 (219)
T ss_pred             -HHHHH-HHHHHhcc-CCEEEEeccCce
Confidence             33333 22223344 589999977643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.99  E-value=1.2e-05  Score=74.85  Aligned_cols=101  Identities=20%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEE-EEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCV-SYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V-~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      +++||||+|.||+.+++.+...  ++++ .++|+++...      .+...+.++++++.++|+|++|+|......     
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~-----   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEE-----   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHH-----
Confidence            4899999999999999998865  5665 4678775421      123345789999899999999987433222     


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020160          230 QVLLALGKKGVIINVGRGAIIDE---KEMVGCLLRGEI  264 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~---~aL~~aL~~g~i  264 (330)
                      -....++.|.-++..+.|.+.|.   +.|.++.+++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~  114 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC  114 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence            12233455666666777887764   356666666553

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.99  E-value=2.2e-05  Score=72.71  Aligned_cols=124  Identities=23%  Similarity=0.397  Sum_probs=76.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ..++|||||+|+||+++++.+...|    -++.+++++.... +.....+..+++.+||+|++++|. ..++.++. +..
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~-~i~   78 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL-EIK   78 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH-HHH
Confidence            3478999999999999999998766    2488888865432 223345677888999999999874 45555543 333


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCC
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH  293 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH  293 (330)
                      ..++++ .+|.+.-|  +..+.+.+.+...+.   ...+-.+-|    .+...-.++++|.
T Consensus        79 ~~l~~~-~iIS~~aG--i~~~~l~~~~~~~~~---vvr~mPn~p----~~~g~g~t~i~~~  129 (260)
T PTZ00431         79 PYLGSK-LLISICGG--LNLKTLEEMVGVEAK---IVRVMPNTP----SLVGQGSLVFCAN  129 (260)
T ss_pred             hhccCC-EEEEEeCC--ccHHHHHHHcCCCCe---EEEECCCch----hHhcceeEEEEeC
Confidence            445554 44555444  335566655533221   112212111    2555566777774

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.99  E-value=8.2e-06  Score=80.76  Aligned_cols=94  Identities=23%  Similarity=0.298  Sum_probs=69.5

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC------CCC--CCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV------TYP--FYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~------~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+.|++++|+|+|.||+.+++.|+..| .+|++++|+.....      +..  ...++.+.+.++|+|+.+++   .+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence            478999999999999999999999999 68999999865321      111  12456778899999999865   3455


Q ss_pred             cccHHHHhcCC----CCcEEEEcCCCcccC
Q 020160          226 LINKQVLLALG----KKGVIINVGRGAIID  251 (330)
Q Consensus       226 li~~~~l~~mk----~gailIN~~rg~~vd  251 (330)
                      +++++.++.+.    .+.++||.+...=||
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            78888777652    235888887643333

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.97  E-value=7.8e-05  Score=72.01  Aligned_cols=139  Identities=23%  Similarity=0.270  Sum_probs=95.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------------C-CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------------T-YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~ell~~aDvV  213 (330)
                      .+|||||+|-||-.+|-.+...|++|+++|.+++...                        + .....+. +.++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence            7999999999999999999999999999998765311                        0 0111222 345699999


Q ss_pred             EEeccCCcccc-c------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC--CceEEEEecC---CCCCCCC
Q 020160          214 IICCALTDQTH-H------LIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG--EIGGAGLDVF---ENEPDVP  279 (330)
Q Consensus       214 ~l~~P~t~~t~-~------li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g--~i~ga~lDV~---~~EP~~~  279 (330)
                      ++|+|. |-++ +      +.+  +...+.||+|.++|==|.-..=..+.++.-|.+.  .+. ..-|.|   .+|-..|
T Consensus        89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            999983 3322 1      111  3456779999999988887766777777777664  232 345654   5554322


Q ss_pred             c----ccccCCceEEcCCCCCCCHHHHHHH
Q 020160          280 E----QLFALDNVVLSPHSAVFTPESFKDV  305 (330)
Q Consensus       280 ~----~L~~~~nvilTPHia~~t~~~~~~~  305 (330)
                      .    ++.+.|+|     +||.|++..+.+
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~~~e~a  191 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPKCAELA  191 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHHHHHHH
Confidence            2    47778888     689988654433

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.94  E-value=2.8e-05  Score=70.96  Aligned_cols=101  Identities=14%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCC---CE-EEEECCC-CCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFG---CC-VSYNSRN-KKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G---~~-V~~~~~~-~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+++|||||.|.||+.+++.+...|   .+ ++.++++ ++..      .+.....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            3578999999999999999997765   23 6667664 2211      13333467888999999999999954 3333


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ++ ++.-..++ +.++|.++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            33 22222334 5688998766  5566677766544

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.94  E-value=0.00027  Score=68.21  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=118.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHH---hhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCEL---AANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---l~~aDvV~l~~P~t~~t~  224 (330)
                      ...+|+||+|.||+.+|......|++|.+|+|+..+..          ....+.+++|+   ++.---|++++-......
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            35799999999999999999999999999999876421          22335577776   566778888876543334


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHH
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKD  304 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  304 (330)
                      .+| ++.+..|.+|-++|+-|...--|...-.++|.+..|...+.-|...|--...    =|-+     +-|-+.++++.
T Consensus        83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GPSi-----MpGG~~eay~~  152 (473)
T COG0362          83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GPSI-----MPGGQKEAYEL  152 (473)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CCCc-----CCCCCHHHHHH
Confidence            444 5789999999999999999999999999999999999999999887753211    1222     34677888888


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 020160          305 VCELAVANLEAFFSNKPLLT  324 (330)
Q Consensus       305 ~~~~~~~nl~~~~~g~~~~~  324 (330)
                      +... ++.|-+-..|+|.-.
T Consensus       153 v~pi-l~~IaAk~~g~pCc~  171 (473)
T COG0362         153 VAPI-LTKIAAKVDGEPCCT  171 (473)
T ss_pred             HHHH-HHHHHhhcCCCCcee
Confidence            8666 445666666877643

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.93  E-value=2.8e-05  Score=74.50  Aligned_cols=103  Identities=19%  Similarity=0.268  Sum_probs=73.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCC-----------------CCCCHHHHhhcCCEEEEec
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYP-----------------FYPDVCELAANSDVLIICC  217 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~-----------------~~~~l~ell~~aDvV~l~~  217 (330)
                      ++|+|||.|.||..+|.+|...|.+|.+++|++...    .+..                 ...+. +.+..+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            579999999999999999999999999999864210    0110                 12233 5678999999999


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      |.. .....+ .+..+.++++.++|.+.-| +-..+.+.+.+...++.
T Consensus        82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            864 444444 4566677889998888653 44456677777665543

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.91  E-value=2.1e-05  Score=73.28  Aligned_cols=85  Identities=28%  Similarity=0.327  Sum_probs=67.8

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      -|.||||+|||||+=|++=|..|+-.|.+|++--|.....      .++. ..+.+|+.++||+|.+.+|...+.. ++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q~~-vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQKE-VYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhHHH-HHH
Confidence            4899999999999999999999999999987655544331      2333 4589999999999999999765543 556


Q ss_pred             HHHHhcCCCCcEE
Q 020160          229 KQVLLALGKKGVI  241 (330)
Q Consensus       229 ~~~l~~mk~gail  241 (330)
                      .+.-..||.|+.|
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            6788889998755

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.90  E-value=0.00014  Score=64.23  Aligned_cols=89  Identities=21%  Similarity=0.252  Sum_probs=65.9

Q ss_pred             CCccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCC-------CCCC-----CCCHHHHhhcCCEEEEec
Q 020160          151 PLGSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TYPF-----YPDVCELAANSDVLIICC  217 (330)
Q Consensus       151 ~~~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~~~-----~~~l~ell~~aDvV~l~~  217 (330)
                      +.+.++.||++.|||-+ .+|+.+|..|...|+.|+.++.+.-...       ....     ..++.+.+++||+|+.++
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            34778999999999977 4699999999999999998864221100       0000     112789999999999998


Q ss_pred             cCCcccccc-ccHHHHhcCCCCcEEEEcCC
Q 020160          218 ALTDQTHHL-INKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~t~~t~~l-i~~~~l~~mk~gailIN~~r  246 (330)
                      +..    ++ +..+.   .|+|+++||+|-
T Consensus       135 G~~----~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         135 PSP----NYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             CCC----CCccCHHH---cCCCcEEEEcCC
Confidence            743    34 66654   689999999984

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PLN00203 glutamyl-tRNA reductase

Probab=97.89  E-value=1.4e-05  Score=80.93  Aligned_cols=90  Identities=20%  Similarity=0.293  Sum_probs=67.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------CC----CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------TY----PFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ++.+++|+|||.|.||+.+++.|...|. +|++++|+.....       +.    ....++.+.+.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            4889999999999999999999999997 6999999865421       11    112456778899999999875   4


Q ss_pred             ccccccHHHHhcCCCC-------cEEEEcCCC
Q 020160          223 THHLINKQVLLALGKK-------GVIINVGRG  247 (330)
Q Consensus       223 t~~li~~~~l~~mk~g-------ailIN~~rg  247 (330)
                      ...+|.++.++.++++       -+|||.+=.
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            4557888888876432       367777643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.89  E-value=7.1e-05  Score=70.26  Aligned_cols=104  Identities=19%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-----------CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-----------PFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-----------~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ++|+|||.|.||..+|..|...|.+|..++|+++..     .+.           ....+..++ ..+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999999999999998854321     121           112345555 8999999999854 4


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGG  266 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~g  266 (330)
                      ++.++ +...+.+.+++.+|...-| +-.++.+.+.+....+.+
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~  120 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG  120 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence            44443 3444556777888887776 333566666666555543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.89  E-value=8.3e-05  Score=75.11  Aligned_cols=178  Identities=17%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             CceEEEEcCCCCCCHHHHccCC-CcceeEEcCCCCCCCChhHHhhcCcEEEe---CCCCc-h------hhHHHHHHHHHH
Q 020160           58 SVKAIFSSAGAPVTAEILRLLP-EVRLVVATSAGLNHIDVVECRRRGVALAN---AGNVF-S------EDVADYALGLLI  126 (330)
Q Consensus        58 ~~d~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~l~L  126 (330)
                      ++|+|+.-.  +.+.+-++.++ .--+|+......|.=-++++.++||.+..   .|... +      .++|+.+=    
T Consensus        65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----  138 (509)
T PRK09424         65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----  138 (509)
T ss_pred             cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence            467777432  23444456655 34456666555555457778889988865   22100 1      12333221    


Q ss_pred             HHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCC-
Q 020160          127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFY-  200 (330)
Q Consensus       127 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~-  200 (330)
                        +|-+....+.  -++... +..-......|.+|.|+|.|.+|...++.++.+|.+|.++|+++...     .+.... 
T Consensus       139 --y~Av~~aa~~--~~~~~~-g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~  213 (509)
T PRK09424        139 --YRAVIEAAHE--FGRFFT-GQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLE  213 (509)
T ss_pred             --HHHHHHHHHH--hcccCC-CceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEE
Confidence              2222222111  111110 00001113569999999999999999999999999999999876431     122100 


Q ss_pred             ------------------CCH--------HHHhhcCCEEEEeccCCcc-ccccccHHHHhcCCCCcEEEEcCC
Q 020160          201 ------------------PDV--------CELAANSDVLIICCALTDQ-THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       201 ------------------~~l--------~ell~~aDvV~l~~P~t~~-t~~li~~~~l~~mk~gailIN~~r  246 (330)
                                        .+.        .+.++.+|+|+.+.-.... ...++.++.++.||+|+++|++|=
T Consensus       214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                              010        1112569999988753221 234556889999999999999974

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.89  E-value=1.7e-05  Score=75.41  Aligned_cols=90  Identities=23%  Similarity=0.373  Sum_probs=62.2

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCC------CCCCC--CCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPS------VTYPF--YPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------~~~~~--~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      +.|++|+|||.|.||+.+++.++..| .+|.+++|++...      .+...  ..++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999876 5788899986532      12211  23466778899999999985543 222


Q ss_pred             ccHHHHhcC-CCCcEEEEcCCC
Q 020160          227 INKQVLLAL-GKKGVIINVGRG  247 (330)
Q Consensus       227 i~~~~l~~m-k~gailIN~~rg  247 (330)
                      + +..++.. +++.++||++..
T Consensus       255 ~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCC
Confidence            2 2333322 246678877753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.88  E-value=7.3e-05  Score=67.96  Aligned_cols=149  Identities=15%  Similarity=0.113  Sum_probs=99.7

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCE---EEEECCCC----CCC-------C----CC---CCCCCHHHHhhcCCE
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCC---VSYNSRNK----KPS-------V----TY---PFYPDVCELAANSDV  212 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~----~~~-------~----~~---~~~~~l~ell~~aDv  212 (330)
                      .++.++++.|+|.|.+|+.+|..|...|++   |..+||+.    ...       .    ..   ....++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            357899999999999999999999999985   88999873    221       0    00   111367788889999


Q ss_pred             EEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCcccccCCceEEc
Q 020160          213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE-IGGAGLDVFENEPDVPEQLFALDNVVLS  291 (330)
Q Consensus       213 V~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~L~~~~nvilT  291 (330)
                      |+.+.|     .++++.+.++.|+++.++...+.-  ..|.-+.++.+.|- +..-|..     .    -..+..|+.+=
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~~-----~----~~~Q~nn~~~f  164 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGRS-----D----FPNQVNNVLGF  164 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCCC-----C----Cccccceeeec
Confidence            999876     467888999999999998888843  34544555555444 3333321     1    23466788888


Q ss_pred             CCCCCCC-----HHHHHHHHHHHHHHHHHHHc
Q 020160          292 PHSAVFT-----PESFKDVCELAVANLEAFFS  318 (330)
Q Consensus       292 PHia~~t-----~~~~~~~~~~~~~nl~~~~~  318 (330)
                      |=++-..     ..--+.|...+++-|-++..
T Consensus       165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         165 PGIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            8765321     11224555566666655554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.84  E-value=1.1e-05  Score=70.77  Aligned_cols=109  Identities=16%  Similarity=0.252  Sum_probs=70.9

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhcC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAANS  210 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~a  210 (330)
                      +|+|||.|.||+.+|..+...|++|..||+++...                .+             .....+++++. .|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            69999999999999999999999999999976521                01             11246787777 99


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH-cCCceEEEEecCC
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL-RGEIGGAGLDVFE  273 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~-~g~i~ga~lDV~~  273 (330)
                      |+|+=++|..-+.+.-+-++.-+.++++++|...+.+  +....|...+. ..++  .++=.|.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~--ig~Hf~~  139 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRPERF--IGMHFFN  139 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTGGGE--EEEEE-S
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcCceE--EEEeccc
Confidence            9999999988776655545566678888877655333  44556666653 2344  3444443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.83  E-value=4e-05  Score=72.74  Aligned_cols=91  Identities=21%  Similarity=0.331  Sum_probs=69.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC----------C---C------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP----------S---V------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~---~------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++|+|||.|..|.++|+.|...|.+|..|.|+++.          .   .      ......++.+.++.||+|++.+|.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            58999999999999999999999999999875321          0   0      123456899999999999999994


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                       ...+..+. +.-..++++..+|+++-|=-.+
T Consensus        82 -~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          82 -QALREVLR-QLKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             -HHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence             34444432 2224568999999998875544

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=0.00011  Score=68.53  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=65.3

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-| .+|+.+|.+|...|+.|+.+...         ..++.+..++||+|+.++..    .+++..+.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvGk----p~~i~~~~  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVGK----PNLITEDM  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecCc----ccccCHHH
Confidence            346899999999999 89999999999999999877432         13688999999999999853    34677655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       219 ---vk~gavvIDvGin~  232 (281)
T PRK14183        219 ---VKEGAIVIDIGINR  232 (281)
T ss_pred             ---cCCCcEEEEeeccc
Confidence               67999999998543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.81  E-value=5.3e-05  Score=70.33  Aligned_cols=94  Identities=21%  Similarity=0.334  Sum_probs=72.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++|||||+|+||++++..+...|    .+|++.+|+.+...      +.....+.+++..++|+|++++..  .  .+  
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q--~~--   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q--DL--   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H--hH--
Confidence            58999999999999999999888    58899998876432      233356777899999999999853  2  12  


Q ss_pred             HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 020160          229 KQVLLALG---KKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       229 ~~~l~~mk---~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      .+.++.++   ++.++|.+.-|  |..+.|.+.+.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            56666676   68899999877  56677777775

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.81  E-value=2.8e-05  Score=77.08  Aligned_cols=89  Identities=22%  Similarity=0.336  Sum_probs=64.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CCC--CCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TYP--FYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+.|++++|+|.|.||+.+++.|+..|. +|++++|++....      +..  ...++.+.+.++|+|+.++|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            3789999999999999999999999998 7899999764321      111  1234566788999999987644   34


Q ss_pred             cccHHHHhcC-----CCCcEEEEcCC
Q 020160          226 LINKQVLLAL-----GKKGVIINVGR  246 (330)
Q Consensus       226 li~~~~l~~m-----k~gailIN~~r  246 (330)
                      ++..+.++.+     +.+.++||++-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            5666666553     24567888764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.80  E-value=5.6e-05  Score=71.11  Aligned_cols=103  Identities=25%  Similarity=0.331  Sum_probs=71.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-----CCCC-------------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVTY-------------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~-------------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.||..+|..|...|.+|..++| ...     ..+.             ....+.++....+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999999999999888 321     0010             01234556668999999999854


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       .++..+ ++.....+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             344433 3444556778888877665 34466777777665554

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.77  E-value=3.3e-05  Score=72.33  Aligned_cols=89  Identities=18%  Similarity=0.217  Sum_probs=70.8

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCC------CCCCHHHHhhcCCEEEEec--cCCc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYP------FYPDVCELAANSDVLIICC--ALTD  221 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~ell~~aDvV~l~~--P~t~  221 (330)
                      +...++.|||.|.+|..-|+.+.++|.+|+..|.+.++..      +..      ....+++.+.++|+|+-++  |.. 
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga-  244 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA-  244 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC-
Confidence            6677999999999999999999999999999988754321      111      1235778899999998764  433 


Q ss_pred             cccccccHHHHhcCCCCcEEEEcC
Q 020160          222 QTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      ..-.++.++.+++||||+++|+++
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEE
Confidence            445688899999999999999984

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00023  Score=66.63  Aligned_cols=111  Identities=23%  Similarity=0.370  Sum_probs=81.0

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+.+++||+|+.++..    .++|+.+.
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG~----p~~i~~~~  219 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVGK----PKLITADM  219 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            446899999999965 67999999999999999887532         23688999999999999853    34788776


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~  299 (330)
                      +   |+|+++||+|.-.+          .+|++   .-||-..+      ... ---.+||--||.-.
T Consensus       220 i---k~gavVIDvGi~~~----------~~gkl---~GDvd~e~------v~~-~a~~iTPVPGGVGp  264 (284)
T PRK14190        220 V---KEGAVVIDVGVNRL----------ENGKL---CGDVDFDN------VKE-KASYITPVPGGVGP  264 (284)
T ss_pred             c---CCCCEEEEeecccc----------CCCCe---eccCcHHH------Hhh-hceEecCCCCCChH
Confidence            5   89999999997553          23454   45663211      111 12358998788755

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.69  E-value=0.00016  Score=67.15  Aligned_cols=113  Identities=24%  Similarity=0.362  Sum_probs=83.3

Q ss_pred             ccccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.+++|+++.|||-|+| |+.++..|...++.|+++....         .++.+..++||+|+.++-    -.+++.++ 
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d-  216 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKAD-  216 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Cccccccc-
Confidence            45799999999999875 8999999999999999886542         368899999999999874    23566654 


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES  301 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~  301 (330)
                        ..|||+++|++|--.+-+          +++   .-||-..+.       ....--+||=-||.-+=+
T Consensus       217 --~vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v-------~~~a~~iTPVPGGVGPmT  264 (283)
T COG0190         217 --MVKPGAVVIDVGINRVND----------GKL---VGDVDFDSV-------KEKASAITPVPGGVGPMT  264 (283)
T ss_pred             --cccCCCEEEecCCccccC----------Cce---EeeccHHHH-------HHhhcccCCCCCccCHHH
Confidence              478999999998755433          565   456643322       112334788888876533

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.69  E-value=8.4e-05  Score=71.68  Aligned_cols=90  Identities=21%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCC----------CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKP----------SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      |..+|..|...|++|++||+++..          ..+.....+..+++++||+|++++|....++.++ ......++++.
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            789999999999999999987641          1233345578888999999999999665477776 36778899999


Q ss_pred             EEEEcCCCcccCH-HHHHHHHH
Q 020160          240 VIINVGRGAIIDE-KEMVGCLL  260 (330)
Q Consensus       240 ilIN~~rg~~vd~-~aL~~aL~  260 (330)
                      ++||++.++.... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999876655 55666664

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.69  E-value=0.00016  Score=68.98  Aligned_cols=84  Identities=18%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CC-CEEEEECCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      ..++++|||.|.+|+.+++.+.. ++ .+|.+|+|++++..         +  .....++++.+++||+|+.+.|.+   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46899999999999999986553 45 57999999865421         1  222467889999999998877754   


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                      +.++..   +.++||+.+.-++.
T Consensus       201 ~pvl~~---~~l~~g~~i~~ig~  220 (314)
T PRK06141        201 EPLVRG---EWLKPGTHLDLVGN  220 (314)
T ss_pred             CCEecH---HHcCCCCEEEeeCC
Confidence            456655   35789985444443

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.00041  Score=64.92  Aligned_cols=80  Identities=24%  Similarity=0.465  Sum_probs=65.3

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+.+++||+|+.++...    +++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~~----~~i~~~~  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATGLA----KFVKKDY  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCCc----CccCHHH
Confidence            457899999999976 579999999999999998775421         36889999999999998643    4677654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGin~  232 (284)
T PRK14170        219 ---IKPGAIVIDVGMDR  232 (284)
T ss_pred             ---cCCCCEEEEccCcc
Confidence               68999999998655

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.67  E-value=0.00041  Score=65.05  Aligned_cols=79  Identities=18%  Similarity=0.363  Sum_probs=64.4

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+..++||+|+.++.-.    +++..+.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvGkp----~~i~~~~  220 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIGSP----LKLTAEY  220 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCC----CccCHHH
Confidence            346899999999976 57999999999999999877542         136889999999999998632    5777755


Q ss_pred             HhcCCCCcEEEEcCCC
Q 020160          232 LLALGKKGVIINVGRG  247 (330)
Q Consensus       232 l~~mk~gailIN~~rg  247 (330)
                         .|+|+++||+|--
T Consensus       221 ---vk~GavVIDvGin  233 (288)
T PRK14171        221 ---FNPESIVIDVGIN  233 (288)
T ss_pred             ---cCCCCEEEEeecc
Confidence               6899999999853

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.66  E-value=0.00014  Score=70.09  Aligned_cols=89  Identities=21%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             eEEEEecChHHHHHHHHHHhCC--------CEEEEECCCC-----C----------CC---CCC------CCCCCHHHHh
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFG--------CCVSYNSRNK-----K----------PS---VTY------PFYPDVCELA  207 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G--------~~V~~~~~~~-----~----------~~---~~~------~~~~~l~ell  207 (330)
                      +|+|||.|+.|.++|..+...|        .+|..|.+..     .          ..   .+.      ....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998766        8999887632     0          00   011      1235788999


Q ss_pred             hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160          208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v  250 (330)
                      +.||+|++++|.. ..+.++ .+.-..++++..+|+++-|=-.
T Consensus        81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGie~  121 (342)
T TIGR03376        81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGLEV  121 (342)
T ss_pred             hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCccc
Confidence            9999999999953 444443 3444567888999999887433

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.65  E-value=0.00084  Score=67.51  Aligned_cols=131  Identities=13%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEEEEECCCCCCC------------CC------------CCCCCCHHHHhhcCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNKKPS------------VT------------YPFYPDVCELAANSDV  212 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~~------------~~------------~~~~~~l~ell~~aDv  212 (330)
                      ++|+|||+|.+|..+|-.|...  |++|+++|.++...            .+            .....+..+.++.||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999866  68899998765421            00            0112345677899999


Q ss_pred             EEEeccCCccc-----------ccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe-cCCCCCCC
Q 020160          213 LIICCALTDQT-----------HHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD-VFENEPDV  278 (330)
Q Consensus       213 V~l~~P~t~~t-----------~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~  278 (330)
                      +++|+|.....           ..+..  ++.-+.++++.++|.-|.-.+=-.+.+...+.+.. .|.-.. +|.+|=+.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~  160 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence            99999733211           12211  34556689999999988866666667777776531 111111 25666554


Q ss_pred             Cc----ccccCCceEE
Q 020160          279 PE----QLFALDNVVL  290 (330)
Q Consensus       279 ~~----~L~~~~nvil  290 (330)
                      +.    .+...|+||+
T Consensus       161 ~G~a~~d~~~p~riVi  176 (473)
T PLN02353        161 EGTAIEDLFKPDRVLI  176 (473)
T ss_pred             CCCcccccCCCCEEEE
Confidence            32    4777888864

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.65  E-value=0.00014  Score=69.67  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             EEEEecChHHHHHHHHHHh-CCCEEEEE-CCCCCC------CCC------------------CCCCCCHHHHhhcCCEEE
Q 020160          161 VGIVGLGSIGSEVAKRLEA-FGCCVSYN-SRNKKP------SVT------------------YPFYPDVCELAANSDVLI  214 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~-~G~~V~~~-~~~~~~------~~~------------------~~~~~~l~ell~~aDvV~  214 (330)
                      |||+|||+||+.+++.+.. -+++|.+. |..++.      ..+                  .....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999998764 46787654 432221      001                  111346899999999999


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      .|+|   .+.+..+++.+.+|+.+++|+-.--
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            8864   5677888999999999999887543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.63  E-value=0.00011  Score=64.76  Aligned_cols=94  Identities=20%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-------CCCCCHHHHhhcCCEEE
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TY-------PFYPDVCELAANSDVLI  214 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~-------~~~~~l~ell~~aDvV~  214 (330)
                      +..++++++.|+|. |.+|+.+++.+...|.+|..++|+.....          +.       ....++.+.++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            34578999999996 99999999999999999999888753210          00       00122345677788777


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v  250 (330)
                      .+.|....+  .+  ..-...+++.+++|+.+..-+
T Consensus       103 ~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078         103 AAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             ECCCCCcee--ch--hhhcccCceeEEEEccCCCCC
Confidence            777655431  11  111123445666666655443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.63  E-value=0.00035  Score=65.37  Aligned_cols=80  Identities=16%  Similarity=0.322  Sum_probs=65.0

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+..++||+|+.++.-    .+++..+.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVGK----PEFIKADW  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCCC----cCccCHHH
Confidence            346899999999975 57999999999999999987643         23688999999999998863    34677654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       221 ---ik~gavVIDvGin~  234 (284)
T PRK14177        221 ---ISEGAVLLDAGYNP  234 (284)
T ss_pred             ---cCCCCEEEEecCcc
Confidence               68999999998533

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.63  E-value=0.00036  Score=65.77  Aligned_cols=116  Identities=19%  Similarity=0.286  Sum_probs=82.0

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+..++||+|+++++-.    +++..+.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAGRP----NLIGAEM  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence            446899999999976 57999999999999999877442         136889999999999998733    4677654


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE  300 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~  300 (330)
                         .|+|+++||+|--.+.|.+      ++|++   .-||-..+      .... --.+||--||.-.=
T Consensus       220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp~  269 (297)
T PRK14186        220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE------VEPV-AAAITPVPGGVGPM  269 (297)
T ss_pred             ---cCCCCEEEEeccccccccc------cCCce---eCCccHHH------HHhh-ceEecCCCCCchHH
Confidence               6899999999865543221      13554   45654211      1111 23489997887553

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00036  Score=65.27  Aligned_cols=111  Identities=23%  Similarity=0.335  Sum_probs=79.6

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+..++||+|++++.-.    ++++.+.
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~p----~~i~~~~  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVGVP----HFIGADA  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence            446899999999976 579999999999999998774321         36889999999999998643    4677764


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~  299 (330)
                         +|+|+++||+|--.+.          +|++   .-||-..+-      .. ----+||==||.-.
T Consensus       218 ---vk~GavVIDvGin~~~----------~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp  262 (282)
T PRK14169        218 ---VKPGAVVIDVGISRGA----------DGKL---LGDVDEAAV------AP-IASAITPVPGGVGP  262 (282)
T ss_pred             ---cCCCcEEEEeeccccC----------CCCe---eecCcHHHH------Hh-hccEecCCCCCcHH
Confidence               6899999999864431          3555   456642211      10 12358897777654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00055  Score=63.95  Aligned_cols=110  Identities=19%  Similarity=0.340  Sum_probs=79.7

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+..++||+|+.++...    +++..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvGkp----~~i~~~~  219 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIGRP----KFIDEEY  219 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCCc----CccCHHH
Confidence            346899999999976 57999999999999999887642         136889999999999998643    4677755


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~  299 (330)
                         .|+|+++||+|--.+           +|++   .=||-..+      .... ---+||--||.-.
T Consensus       220 ---ik~gavVIDvGin~~-----------~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp  263 (278)
T PRK14172        220 ---VKEGAIVIDVGTSSV-----------NGKI---TGDVNFDK------VIDK-ASYITPVPGGVGS  263 (278)
T ss_pred             ---cCCCcEEEEeecccc-----------CCce---eeeccHHH------HHhh-ccEecCCCCCccH
Confidence               689999999975432           2455   45663211      1111 1248998788765

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.62  E-value=0.00075  Score=64.15  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---CCC------C--------CCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---VTY------P--------FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~------~--------~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .++|+|||.|.||..+|.+|...|.+|.++.|+....   .+.      .        ...+. +....+|+|+++++..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~   83 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTT   83 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCC
Confidence            3689999999999999999999999999888765211   010      0        01122 3467899999999865


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                      . +...+ +.....+++++.++...-| +-.++.+.+.+...++.++..
T Consensus        84 ~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         84 A-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             C-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence            3 33332 2344556778888877665 446777888887667665533

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.61  E-value=0.0004  Score=65.16  Aligned_cols=81  Identities=26%  Similarity=0.429  Sum_probs=66.0

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+..++||+|+.++...    ++++.+.
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvGkp----~~i~~~~  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVGRP----HLITPEM  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCCc----CccCHHH
Confidence            456899999999965 679999999999999998775422         36889999999999998532    5777765


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 020160          232 LLALGKKGVIINVGRGAI  249 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~  249 (330)
                         .|+|+++||+|.-.+
T Consensus       217 ---vk~GavVIDVGin~~  231 (287)
T PRK14173        217 ---VRPGAVVVDVGINRV  231 (287)
T ss_pred             ---cCCCCEEEEccCccc
Confidence               589999999997654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.60  E-value=0.00015  Score=67.98  Aligned_cols=92  Identities=18%  Similarity=0.178  Sum_probs=61.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC------C-C---CCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV------T-Y---PFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~------~-~---~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      .+.++++.|+|.|.+|++++..|...| .+|.+++|+.+...      . .   ....++.+.+..+|+|+.++|..-..
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            467899999999999999999999999 68999999865321      1 0   01013346678899999999865322


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..-...-.+..++++.+++++.-
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeec
Confidence            10000111234556666666654

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.60  E-value=0.00039  Score=65.05  Aligned_cols=80  Identities=21%  Similarity=0.346  Sum_probs=65.2

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+..++||+|+.++.-    .+++..+.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvGk----p~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            446899999999976 579999999999999998775432         3688999999999999864    34677764


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       219 ---vk~GavVIDvGin~  232 (282)
T PRK14166        219 ---VKEGVIVVDVGINR  232 (282)
T ss_pred             ---cCCCCEEEEecccc
Confidence               68999999998533

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.58  E-value=0.00042  Score=65.30  Aligned_cols=80  Identities=23%  Similarity=0.335  Sum_probs=65.5

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+.+++||+|+.++..    .+++..+.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence            446899999999976 56999999999999999887542         23688999999999999854    25777755


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       229 ---vk~gavVIDvGin~  242 (299)
T PLN02516        229 ---IKPGAAVIDVGTNA  242 (299)
T ss_pred             ---cCCCCEEEEeeccc
Confidence               68999999998644

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.58  E-value=0.00029  Score=67.61  Aligned_cols=89  Identities=16%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCCCCCCCCCH----HHHhhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTYPFYPDV----CELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l----~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++.|+++.|||.|.||+.+|+.|...|. +|++.+|+....    .+.++    .++..++|+|+.+.-.|......+..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~----~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL----PYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc----chhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            5899999999999999999999999996 689999987431    12222    25568999999874333333445666


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 020160          230 QVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~  248 (330)
                      +.++..++ -++||.+=..
T Consensus       247 ~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             HHHhhccC-cEEEEecCCC
Confidence            65554332 3777765433

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.56  E-value=0.00047  Score=64.50  Aligned_cols=79  Identities=24%  Similarity=0.367  Sum_probs=64.5

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+..++||+|+.+++-.    ++|..+.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvGkp----~~i~~~~  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVGKP----NFITADM  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccCCc----CcCCHHH
Confidence            446899999999976 579999999999999998875421         36889999999999998643    4677654


Q ss_pred             HhcCCCCcEEEEcCCC
Q 020160          232 LLALGKKGVIINVGRG  247 (330)
Q Consensus       232 l~~mk~gailIN~~rg  247 (330)
                         .|+|+++||+|--
T Consensus       220 ---vk~gavVIDvGin  232 (282)
T PRK14180        220 ---VKEGAVVIDVGIN  232 (282)
T ss_pred             ---cCCCcEEEEeccc
Confidence               6899999999853

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.55  E-value=0.00031  Score=62.71  Aligned_cols=90  Identities=21%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC---CCCC---------CC-----------------C--C---
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN---KKPS---------VT-----------------Y--P---  198 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~---~~~~---------~~-----------------~--~---  198 (330)
                      ..|..++|+|+|+|.+|..+|+.|...|. +++.+|+.   ....         .+                 .  .   
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            35889999999999999999999999999 68888876   2110         00                 0  0   


Q ss_pred             ---CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160          199 ---FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       199 ---~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                         ...++.++++++|+|+-+ ..+.+++.++..+....++...++...
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~  144 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS  144 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence               012345678889999888 578888988888888888776666643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00054  Score=64.18  Aligned_cols=110  Identities=18%  Similarity=0.369  Sum_probs=80.6

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHh--CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEA--FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      +.++.||++.|||-+ .+|+.+|..|..  .|+.|+.+...         ..++.+.+++||+|+.++...    +++..
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGkp----~~i~~  219 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGVA----HLVTA  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCCc----CccCH
Confidence            456899999999965 679999999987  78999887542         236889999999999998643    46777


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~  299 (330)
                      +.   +|+|+++||+|.-.+          .+|++   .-||- .+      ..... -.+||-=||.-.
T Consensus       220 ~~---ik~GavVIDvGin~~----------~~gkl---~GDvd-~~------v~~~a-~~iTPVPGGVGp  265 (284)
T PRK14193        220 DM---VKPGAAVLDVGVSRA----------GDGKL---VGDVH-PD------VWEVA-GAVSPNPGGVGP  265 (284)
T ss_pred             HH---cCCCCEEEEcccccc----------CCCcE---EeecC-Hh------HHhhC-CEEeCCCCChhH
Confidence            55   689999999986553          34555   45665 21      11111 248998788654

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.54  E-value=0.00031  Score=65.44  Aligned_cols=104  Identities=16%  Similarity=0.063  Sum_probs=71.0

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCCCCHHHH-hhcCCEEEEeccCC--ccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFYPDVCEL-AANSDVLIICCALT--DQT  223 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~el-l~~aDvV~l~~P~t--~~t  223 (330)
                      ..+++++|+|.|.+|++++..+...|.+|.+++|+..+..         +.....++++. +.++|+|+.++|..  +..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            4578999999999999999999999999999998754311         11111234433 35799999999975  222


Q ss_pred             cc-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          224 HH-LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       224 ~~-li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .. .++   .+.++++.+++++.-.....  .|.+..++..+
T Consensus       195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~  231 (270)
T TIGR00507       195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT  231 (270)
T ss_pred             CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence            11 222   34578899999997766433  46666665544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.54  E-value=0.00024  Score=69.07  Aligned_cols=92  Identities=20%  Similarity=0.232  Sum_probs=64.7

Q ss_pred             CceEEEEecChHHHHHHHHHHhCC-------CEEEEECCCCCC---------------C---CC------CCCCCCHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFG-------CCVSYNSRNKKP---------------S---VT------YPFYPDVCEL  206 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~~---------------~---~~------~~~~~~l~el  206 (330)
                      -++|+|||.|.+|.++|..+...|       .+|..|.++...               .   .+      .....+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            368999999999999999998655       789888776531               0   01      1124578889


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHh--cCCCCcEEEEcCCCcccC
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLL--ALGKKGVIINVGRGAIID  251 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~--~mk~gailIN~~rg~~vd  251 (330)
                      ++.||+|++++|.. ..+.++. +.-.  .+++++++|+++-|=-.+
T Consensus        91 v~~aDiIvlAVPsq-~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         91 VEDADLLIFVIPHQ-FLESVLS-QIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HhcCCEEEEEcChH-HHHHHHH-HhccccccCCCCEEEEEeCCcccC
Confidence            99999999999943 4444432 2223  456677999998775443

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.00053  Score=64.51  Aligned_cols=80  Identities=19%  Similarity=0.387  Sum_probs=65.3

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+..++||+|+.++...    +++..+.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvGkp----~~i~~~~  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVGIP----NFVKYSW  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence            446899999999976 579999999999999998776432         36889999999999998643    4677755


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       222 ---ik~gaiVIDVGin~  235 (294)
T PRK14187        222 ---IKKGAIVIDVGINS  235 (294)
T ss_pred             ---cCCCCEEEEecccc
Confidence               57999999998644

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.53  E-value=0.00027  Score=62.91  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=48.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK  237 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~  237 (330)
                      ++++|||- |.||+.+++.++..|+.|.                     +++||+|++|+|... +.     +.++.+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~~-~~-----~~i~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPIDA-AL-----NYIESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHHH-HH-----HHHHHhC-
Confidence            47999998 9999999999999999985                     369999999999652 22     3333333 


Q ss_pred             CcEEEEcCCCcc
Q 020160          238 KGVIINVGRGAI  249 (330)
Q Consensus       238 gailIN~~rg~~  249 (330)
                       .++++++.-+-
T Consensus        53 -~~v~Dv~SvK~   63 (197)
T PRK06444         53 -NNFVEISSVKW   63 (197)
T ss_pred             -CeEEeccccCH
Confidence             37899987553

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.52  E-value=0.00021  Score=58.10  Aligned_cols=100  Identities=23%  Similarity=0.393  Sum_probs=69.8

Q ss_pred             ceEEEEe----cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          159 KRVGIVG----LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       159 ~~vgIiG----~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      |+++|||    -|..|..+.+.++..|++|+..++......+...+.++.|.-...|++++++|... +..++  +.+..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~-~~~~v--~~~~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDK-VPEIV--DEAAA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHH-HHHHH--HHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHH-HHHHH--HHHHH
Confidence            6899999    78999999999999999999998877666676778899985588999999998543 33343  23344


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       235 mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +..+.+++..|    ..++++.+.+++..+.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            56778888887    6677888888887765

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.52  E-value=0.00053  Score=65.96  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=65.0

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...         ..++.+..++||+|+.++..    .+++..+.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVGQ----PNMVRGSW  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH
Confidence            346899999999965 57999999999999999887542         23688999999999999853    34677755


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       293 ---vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 ---IKPGAVVIDVGINP  306 (364)
T ss_pred             ---cCCCCEEEeccccc
Confidence               68999999998644

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.00067  Score=63.45  Aligned_cols=80  Identities=21%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|.+|...|+.|+.+...         ..++.+..++||+|+.++.-    .++|..+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~  218 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIGK----AELVKGAW  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            346899999999976 57999999999999999887543         13688999999999999863    34777755


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         .|+|+++||+|--.
T Consensus       219 ---ik~gaiVIDvGin~  232 (282)
T PRK14182        219 ---VKEGAVVIDVGMNR  232 (282)
T ss_pred             ---cCCCCEEEEeecee
Confidence               68999999998654

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.50  E-value=0.00049  Score=64.86  Aligned_cols=80  Identities=21%  Similarity=0.353  Sum_probs=64.2

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHh----CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEA----FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.||++.|||-+ .+|+.+|..|..    .|.+|..+....         .++.+.+++||+|+.+++..    ++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li  220 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFI  220 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence            346899999999976 579999999976    588887765432         35889999999999999533    578


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~  248 (330)
                      ..+.+   |+|+++||+|-..
T Consensus       221 ~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        221 TADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CHHHc---CCCCEEEEeeccc
Confidence            88776   8999999998544

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.50  E-value=0.00056  Score=65.47  Aligned_cols=80  Identities=21%  Similarity=0.359  Sum_probs=64.9

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....         .++.+..++||+|+.++...    +++..+.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvGkp----~~v~~d~  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAGIP----NLVRGSW  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccCCc----CccCHHH
Confidence            456899999999976 569999999999999998775421         36889999999999998643    4677655


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|+|+++||+|--.
T Consensus       276 ---vk~GavVIDVGin~  289 (345)
T PLN02897        276 ---LKPGAVVIDVGTTP  289 (345)
T ss_pred             ---cCCCCEEEEccccc
Confidence               68999999998643

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.48  E-value=0.00074  Score=63.29  Aligned_cols=80  Identities=24%  Similarity=0.412  Sum_probs=64.6

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+...         ..++.+.+++||+|+.++.-.    +++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG~p----~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIGVP----LFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCCc----Ccc
Confidence            346899999999976 5799999999887    7899877542         136899999999999998643    467


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~  248 (330)
                      ..+.   .|+|+++||+|--.
T Consensus       215 ~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        215 KEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             CHHH---cCCCCEEEEecccc
Confidence            7755   68999999998654

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.47  E-value=0.00036  Score=66.83  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=63.0

Q ss_pred             CceEEEEecChHHHHHHHHHHh-C-CCEEEEECCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-F-GCCVSYNSRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~-G~~V~~~~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      -+++||||.|.+|+..++.+.. + .-+|.+|+++.+...         +  .....+.++++++||+|+.|+|.+   .
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence            4799999999999997776653 2 347889999875421         2  123578999999999999998754   4


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .++..+   .+|||+.+..+|.-
T Consensus       205 P~~~~~---~l~~g~~v~~vGs~  224 (325)
T TIGR02371       205 PVVKAD---WVSEGTHINAIGAD  224 (325)
T ss_pred             cEecHH---HcCCCCEEEecCCC
Confidence            566554   46999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.46  E-value=0.00035  Score=67.20  Aligned_cols=95  Identities=24%  Similarity=0.327  Sum_probs=69.7

Q ss_pred             CccccCCceEEEEec-ChHHHHHHHHHHh-CC-CEEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          152 LGSKLGGKRVGIVGL-GSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~-G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ++.++.|+++.|+|. |.||+.+++.|.. .| .+++.++|+.....      ......++++.+.++|+|+.+.-.   
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~---  225 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM---  225 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence            355789999999998 8999999999974 56 48888888654311      111234677899999988876532   


Q ss_pred             ccc-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 020160          223 THH-LINKQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       223 t~~-li~~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                      .+. .++.+.   ++++.++||+|+..=||.
T Consensus       226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            233 377764   478999999999877764

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.45  E-value=0.00029  Score=66.91  Aligned_cols=84  Identities=12%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CCCC-CCCHHHHhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV---------TYPF-YPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|++.+..         +... ..++++++.++|+|+.++|.+   +
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            46899999999999999999864 665 6899999865321         1111 357889999999999998865   3


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .++..    .+|||+.++.+|.-
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCC
Confidence            56653    36999999999853

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.45  E-value=0.00056  Score=64.15  Aligned_cols=79  Identities=23%  Similarity=0.395  Sum_probs=63.9

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHh----CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEA----FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.||++.|||-+ .+|+.+|..|..    .|++|+.+....         .++.+.+++||+|+.++.    ..+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li  218 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV  218 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence            446899999999976 579999999987    789998765421         368899999999999984    34568


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 020160          228 NKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg  247 (330)
                      ..+.+   |+|+++||+|--
T Consensus       219 ~~~~v---k~GavVIDVGi~  235 (286)
T PRK14184        219 TADMV---KPGAVVVDVGIN  235 (286)
T ss_pred             CHHHc---CCCCEEEEeeee
Confidence            77665   899999999843

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.43  E-value=0.00048  Score=65.75  Aligned_cols=88  Identities=23%  Similarity=0.306  Sum_probs=61.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-------------CCCC------CCCCCHHHHh-hcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-------------SVTY------PFYPDVCELA-ANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~~~------~~~~~l~ell-~~aDvV~l~~P  218 (330)
                      ++|+|||.|.||..+|..|...|.+|..|+|+.+.             ..+.      ....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            47999999999999999999999999999986421             0011      1224566665 58999999998


Q ss_pred             CCccccccccHHHHh-cCCCCcEEEEcCCCc
Q 020160          219 LTDQTHHLINKQVLL-ALGKKGVIINVGRGA  248 (330)
Q Consensus       219 ~t~~t~~li~~~~l~-~mk~gailIN~~rg~  248 (330)
                      .. .++.++. +... .++++..+|...-|-
T Consensus        81 s~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 TQ-QLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             HH-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            54 4444432 3333 567777777776664

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.43  E-value=0.00049  Score=63.73  Aligned_cols=120  Identities=16%  Similarity=0.157  Sum_probs=72.3

Q ss_pred             HHHHHHhCC--CEEEEECCCCCCC-----CCCCC-CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160          173 VAKRLEAFG--CCVSYNSRNKKPS-----VTYPF-YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       173 ~A~~l~~~G--~~V~~~~~~~~~~-----~~~~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      +|+.|+..|  .+|.++|+++...     .++.. ..+-.+.++++|+|++|+|... +..++ ++..+.+++|++++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEEe
Confidence            577788777  7999999987532     13322 1122578999999999999764 34343 5677779999999999


Q ss_pred             CCCcccCHHHHHHHHHcCCceEEEE-ecCCCCCC----CCcccccCCceEEcCCCC
Q 020160          245 GRGAIIDEKEMVGCLLRGEIGGAGL-DVFENEPD----VPEQLFALDNVVLSPHSA  295 (330)
Q Consensus       245 ~rg~~vd~~aL~~aL~~g~i~ga~l-DV~~~EP~----~~~~L~~~~nvilTPHia  295 (330)
                      +.-+.--.+++.+.+.. .....+. =.|.+|-.    ....|+.-.++++||+-.
T Consensus        79 ~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             -S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             CCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            88765555566665552 2222222 23444421    123688889999999765

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.40  E-value=0.0003  Score=69.08  Aligned_cols=91  Identities=23%  Similarity=0.345  Sum_probs=65.9

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C--CCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T--YPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      +|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+..      +  +....++.+.+.++|+|++++.   +...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence            4899999999999999999999999995 7889999876532      2  2234567788999999999853   4455


Q ss_pred             cccHHHHhcC-C--CCcEEEEcCCCc
Q 020160          226 LINKQVLLAL-G--KKGVIINVGRGA  248 (330)
Q Consensus       226 li~~~~l~~m-k--~gailIN~~rg~  248 (330)
                      +++.+.+... +  +.-++||.+=..
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCC
Confidence            6665544432 1  114677776433

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.40  E-value=0.00043  Score=66.72  Aligned_cols=87  Identities=18%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CC--CC------CCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SV--TY------PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~--~~------~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|+|||.|.+|..+|..|...| .|..|.+++..            ..  +.      ....++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999988 56666554321            00  11      123467788899999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      . ..++..+ ++....++++..+|++.-|=
T Consensus        87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence            4 3455443 34455678888899988764

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.37  E-value=0.0011  Score=62.52  Aligned_cols=80  Identities=19%  Similarity=0.360  Sum_probs=63.7

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+...         ..++.+..++||+|+.++.-    .+++
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvGk----p~~i  222 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAGV----PNLV  222 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecCC----cCcc
Confidence            456899999999965 6799999999876    7889876432         13688999999999998853    3467


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~  248 (330)
                      ..+.   .|+|+++||+|.-.
T Consensus       223 ~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        223 KPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CHHH---cCCCCEEEecCCCc
Confidence            7655   68999999998654

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.36  E-value=0.0005  Score=68.03  Aligned_cols=86  Identities=16%  Similarity=0.307  Sum_probs=61.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C-C--CCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T-Y--PFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~-~--~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .+.|+++.|||.|.||+.+++.|...|. ++++++|+.....      + .  ..+.++.+.+.++|+|++|++..   +
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            4889999999999999999999999996 6899999865321      1 1  12345667899999999997643   3


Q ss_pred             ccccHHHHhcCCCCcEEEEcC
Q 020160          225 HLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~  245 (330)
                      .+|..+...  .+.-++||.+
T Consensus       255 ~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeC
Confidence            456655432  1234566654

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.35  E-value=0.0012  Score=62.04  Aligned_cols=80  Identities=16%  Similarity=0.324  Sum_probs=63.5

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+....         .++.+..++||+|+.++...    ++|
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGkp----~~i  218 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQP----EFV  218 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCCc----Ccc
Confidence            346899999999976 5799999999876    68898774321         36889999999999998643    467


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~  248 (330)
                      ..+   ..|+|+++||+|--.
T Consensus       219 ~~~---~vk~gavVIDvGin~  236 (293)
T PRK14185        219 KAD---MVKEGAVVIDVGTTR  236 (293)
T ss_pred             CHH---HcCCCCEEEEecCcc
Confidence            764   468999999998644

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.32  E-value=0.0014  Score=62.09  Aligned_cols=113  Identities=15%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhh
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAA  208 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~  208 (330)
                      -+++||||.|.||+.+|..+..-|+.|..+|+++...                .+             .....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            4799999999999999999988779999999885320                01             00112222 689


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCC
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE  275 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  275 (330)
                      .||+|+=++|.+-+.++-+-++.=...+|+++|= |||+   +.-.++.++++ ..=...++=-|.+-
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~  145 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPV  145 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCC
Confidence            9999999999888877655556666678888774 4444   45667777773 33334566555543

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.31  E-value=0.0014  Score=61.86  Aligned_cols=80  Identities=21%  Similarity=0.344  Sum_probs=63.2

Q ss_pred             ccccCCceEEEEecC-hHHHHHHHHHHhC----CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLG-SIGSEVAKRLEAF----GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+...         ..++.+..++||+|+.++--    .+++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvGk----p~~i  218 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAGV----PELI  218 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccCC----cCcc
Confidence            346899999999976 5799999999865    7899876432         13688999999999998743    3477


Q ss_pred             cHHHHhcCCCCcEEEEcCCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~  248 (330)
                      ..+.   +|+|+++||+|--.
T Consensus       219 ~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        219 DGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CHHH---cCCCCEEEEccccc
Confidence            7654   68999999998544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.27  E-value=0.0025  Score=57.58  Aligned_cols=103  Identities=20%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCC----------CC------CCCCCCC-----CCHHHHh-hcC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNK----------KP------SVTYPFY-----PDVCELA-ANS  210 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~----------~~------~~~~~~~-----~~l~ell-~~a  210 (330)
                      .++.|+++.|.|||++|+.+|+.|...|.+|++ .|.+.          +.      ..+...+     .+-++++ ..|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            357899999999999999999999999997654 45443          10      0011111     1113332 468


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      |+++-|.+.     +.|+.+....++ -.+++-.+.+.+-+  .-.+.|.+..+
T Consensus        99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi  144 (217)
T cd05211          99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGI  144 (217)
T ss_pred             cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCc
Confidence            999887753     367878777776 45666677777655  34566666654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.26  E-value=0.0011  Score=70.03  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=79.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~  209 (330)
                      ++|+|||.|.||..+|..+...|++|+.+|.+++..                .+             .....++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            589999999999999999999999999999876421                00             0112345 45799


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                      ||+|+=++|...+.+.-+-++.=+.++++++|...++  -+....|.+.+... =+-.++--|.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p-~r~~g~Hff~P  454 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS--TISISLLAKALKRP-ENFCGMHFFNP  454 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCC-ccEEEEecCCc
Confidence            9999999998888777666666677899987754433  34556677766432 22245655543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.26  E-value=0.0032  Score=57.28  Aligned_cols=104  Identities=23%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---C--------------CC----C--CCCCCHHHH-hhc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---S--------------VT----Y--PFYPDVCEL-AAN  209 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~--------------~~----~--~~~~~l~el-l~~  209 (330)
                      .++.|+++.|.|+|.+|+.+|+.|..+|++|++...+...   .              .+    +  ....+.+++ -.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            4578999999999999999999999999999855433110   0              00    0  000122332 236


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ||+++-|.+     .+.++.+...+++ -.+++-.+-+.+ . ....+.|.++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            788877764     3356777777776 345666666665 3 5555777777765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.25  E-value=0.00061  Score=65.26  Aligned_cols=83  Identities=16%  Similarity=0.126  Sum_probs=62.6

Q ss_pred             CCceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ..++++|||.|.+|+..+..+. ..+. +|.+++|++++..          +.  ..+.+++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4679999999999999887764 4565 6889999865321          11  22567889999999999999855  


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                       +.++.    +.+|+|+.++.+|.
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCC
Confidence             34544    45799999998875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.24  E-value=0.00064  Score=65.15  Aligned_cols=83  Identities=24%  Similarity=0.313  Sum_probs=54.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC------CCCHHHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF------YPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .|++|+|+|+|.+|....+.++++|++|++++++.++..     +...      ....+.+-+.+|+++.++| ...   
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~---  241 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT---  241 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh---
Confidence            499999999999999999999999999999999876431     1110      1112223333666666665 222   


Q ss_pred             cccHHHHhcCCCCcEEEEcC
Q 020160          226 LINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~  245 (330)
                      +  ...++.++++..++-+|
T Consensus       242 ~--~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         242 L--EPSLKALRRGGTLVLVG  259 (339)
T ss_pred             H--HHHHHHHhcCCEEEEEC
Confidence            1  34555666666665554

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.23  E-value=0.0013  Score=60.81  Aligned_cols=105  Identities=20%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC--------------------CCCC-----C------CCCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--------------------PSVT-----Y------PFYPD  202 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--------------------~~~~-----~------~~~~~  202 (330)
                      .++.|+|+.|-|||++|+.+|+.|..+|++|++...+..                    ...+     +      ....+
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~  113 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE  113 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence            468999999999999999999999999999984432110                    0000     0      00113


Q ss_pred             HHHH-hhcCCEEEEeccCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          203 VCEL-AANSDVLIICCALTDQTHHLINKQVLLALG--KKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       203 l~el-l~~aDvV~l~~P~t~~t~~li~~~~l~~mk--~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .+++ -..||+++-|     .+.+.|+.+..+.++  .-.+++-.+-|.+-+  +-.+.|.++.|.
T Consensus       114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            3343 3468988776     367789988888884  345777777777654  455777777664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.22  E-value=0.00011  Score=58.45  Aligned_cols=85  Identities=22%  Similarity=0.301  Sum_probs=56.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC--CC-CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--PS-VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~~-~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .++|+++.|||.|.+|..=++.|...|.+|+++++...  +. .... ...+++.+..+|+|+.+++.. +    +++..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d~-~----~n~~i   77 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLI-RREFEEDLDGADLVFAATDDP-E----LNEAI   77 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEE-ESS-GGGCTTESEEEE-SS-H-H----HHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHH-hhhHHHHHhhheEEEecCCCH-H----HHHHH
Confidence            57899999999999999999999999999999988731  11 0111 123346688899888776432 2    34455


Q ss_pred             HhcCCCCcEEEEcC
Q 020160          232 LLALGKKGVIINVG  245 (330)
Q Consensus       232 l~~mk~gailIN~~  245 (330)
                      ....+.-.+++|++
T Consensus        78 ~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   78 YADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHTTSEEEET
T ss_pred             HHHHhhCCEEEEEC
Confidence            55566566788874

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.21  E-value=0.0042  Score=59.37  Aligned_cols=154  Identities=15%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHH---hhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCEL---AANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~el---l~~aDvV~l~~P~t~~t~~  225 (330)
                      ..+|+||++.||+.++-.....|+.|.+|+|...+..          ......|++|+   ++.--.|++.+-.......
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            5799999999999999999999999999999875421          12234578876   4667788888776666666


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHH
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDV  305 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~  305 (330)
                      +| ++...+|.+|-++|+-|....-|...-.+.|.+..|-..+.-|...|--...    -|.+     +-|-+.++|.++
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPSl-----MpGg~~~Awp~i  156 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPSL-----MPGGSKEAWPHI  156 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCcc-----CCCCChHHHHHH
Confidence            65 4688899999999999999999999999999999988899999887753221    0111     335667888888


Q ss_pred             HHHHHHHHHHHHcCCCC
Q 020160          306 CELAVANLEAFFSNKPL  322 (330)
Q Consensus       306 ~~~~~~nl~~~~~g~~~  322 (330)
                      ...+..--.+.-.|+|.
T Consensus       157 k~ifq~iaakv~~~epC  173 (487)
T KOG2653|consen  157 KDIFQKIAAKVSDGEPC  173 (487)
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            77665543333456665

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.19  E-value=0.00092  Score=64.08  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=63.8

Q ss_pred             CCceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ..++++|||.|.+|+..++.+. .++. +|.+|+|++.+..          +.  ....++++.+++||+|+.++|.+  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            3579999999999999999987 4775 6889999875421          11  12467889999999999998764  


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                       ..+|..+.   +|+|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             34666543   689998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.19  E-value=0.00059  Score=64.34  Aligned_cols=36  Identities=42%  Similarity=0.588  Sum_probs=34.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+.+||+|+|.+|+--.+.+++||++|++.+++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence            799999999999999999999999999999999763

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.17  E-value=0.0012  Score=53.70  Aligned_cols=85  Identities=14%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             eEEEEe-cChHHHHHHHHHHhC-CCEEEEE-CCCCCCCC------C-CC-C-CCCH--HHH-hhcCCEEEEeccCCcccc
Q 020160          160 RVGIVG-LGSIGSEVAKRLEAF-GCCVSYN-SRNKKPSV------T-YP-F-YPDV--CEL-AANSDVLIICCALTDQTH  224 (330)
Q Consensus       160 ~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~~~~------~-~~-~-~~~l--~el-l~~aDvV~l~~P~t~~t~  224 (330)
                      ++||+| .|.+|+.+++.+... ++++... +++.....      + .. . ....  +++ ..++|+|++|+|.....+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999999874 7777654 43321111      0 10 0 0111  122 258999999999774443


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                      .+  ......+++|.++|++|.
T Consensus        81 ~~--~~~~~~~~~g~~viD~s~  100 (122)
T smart00859       81 IA--PLLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HH--HHHHhhhcCCCEEEECCc
Confidence            22  134556799999999974

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.16  E-value=0.00076  Score=63.41  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCCC--------C-----CCCCCHHHHhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVT--------Y-----PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~--------~-----~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +.++++.|+|.|.+|++++..|...|+ +|.+++|+..+...        .     ....++.+.++++|+|+.++|..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            567999999999999999999999998 79999997643210        0     01234455677889888888754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.15  E-value=0.0011  Score=64.64  Aligned_cols=84  Identities=18%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC---------------CCCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV---------------TYPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~---------------~~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      +++.|||+|.||+.+|..|...| .+|++.+|+..+..               .......+.+++++.|+|++++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999888 89999999854311               111123567788888888888876522


Q ss_pred             ccccccHHHH-hcCCCCcEEEEcCCCc
Q 020160          223 THHLINKQVL-LALGKKGVIINVGRGA  248 (330)
Q Consensus       223 t~~li~~~~l-~~mk~gailIN~~rg~  248 (330)
                      .      ..+ +.++.|.-.++++-..
T Consensus        82 ~------~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          82 L------TILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             H------HHHHHHHHhCCCEEEcccCC
Confidence            2      222 2345566666665443

>PRK06046 alanine dehydrogenase; Validated

Probab=97.12  E-value=0.001  Score=63.71  Aligned_cols=82  Identities=21%  Similarity=0.271  Sum_probs=61.1

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -+++||||.|.+|+..++.+.. .+. +|.+|+|++....          +  ...+.+++++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            4699999999999999998873 455 4678898864311          1  122567889887 99999999864   


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..++..+   .+|+|+.+..+|.
T Consensus       205 ~P~~~~~---~l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAE---WIKEGTHINAIGA  224 (326)
T ss_pred             CcEecHH---HcCCCCEEEecCC
Confidence            3566655   4589999888874

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.11  E-value=0.0017  Score=61.99  Aligned_cols=114  Identities=19%  Similarity=0.134  Sum_probs=70.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~  217 (330)
                      +..++|+|||.|.+|..+|..+...| .++..+|.+.....             +.    ....+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45789999999999999999998878 68888988664311             10    1123555 779999999998


Q ss_pred             --cCCcc-cc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE--Ee
Q 020160          218 --ALTDQ-TH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLL--RGEIGGAG--LD  270 (330)
Q Consensus       218 --P~t~~-t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~--~g~i~ga~--lD  270 (330)
                        |..+. ++        .++.  .+.+....|.+++|+++-..=+-...+.+...  ..++.|.+  +|
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              44331 11        1110  22344456888999986533222333333321  35666655  55

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.10  E-value=0.00066  Score=60.82  Aligned_cols=88  Identities=22%  Similarity=0.331  Sum_probs=56.5

Q ss_pred             CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------C-CCC---CCCHHHHhhcCCEEEEeccCC
Q 020160          151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T-YPF---YPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       151 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~-~~~---~~~l~ell~~aDvV~l~~P~t  220 (330)
                      |+..++.|+++.|||.|.+|..-++.|..+|++|+++++...+..      + ...   ..+ .+.+..+|+|+.+.. .
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~-d   79 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATD-D   79 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCC-C
Confidence            344568999999999999999999999999999999988654210      0 100   011 344567777665533 2


Q ss_pred             ccccccccHHHHhcCCCCcEEEEc
Q 020160          221 DQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      ++    +|.......+...++||+
T Consensus        80 ~~----ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        80 EE----LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             HH----HHHHHHHHHHHcCCEEEE
Confidence            22    233444444445566664

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.09  E-value=0.0011  Score=63.22  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=54.5

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCC---------CC--CCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPS---------VT--YPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~---------~~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      +++||||.|..|..-++.+.. ++. +|.+|+|++...         .+  .....+.++.+++||+|+.++|.+..+ -
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            589999999999998888764 665 789999986431         11  223568999999999999998876543 5


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc
Q 020160          226 LINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~  249 (330)
                      +++.+   .++||+.++.+|....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            66654   5789999999987543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.08  E-value=0.0017  Score=62.03  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=65.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEE-ECCCC-CCC---CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSY-NSRNK-KPS---VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~-~~~---~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .+|||||+|+||+.+++.+... ++++.+ +++++ ...   .+.....+.++++.+.|+|++|+|.....     ....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence            5899999999999999998765 788864 67774 211   12222346777888999999999865332     3445


Q ss_pred             hcCCCCcEEEEcCCC--cccCHHH-HHHHHHc-CCce
Q 020160          233 LALGKKGVIINVGRG--AIIDEKE-MVGCLLR-GEIG  265 (330)
Q Consensus       233 ~~mk~gailIN~~rg--~~vd~~a-L~~aL~~-g~i~  265 (330)
                      ..++.|.-+|+..--  .+-+..+ +-++-++ |+..
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            556677767776421  1223333 4444453 5554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.07  E-value=0.0016  Score=68.94  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~  209 (330)
                      ++|+|||.|.||..+|..+...|++|+.+|++++..                .+             .....++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            589999999999999999999999999999876431                00             0112345 35799


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                      ||+|+=++|.+.+.+.-+-++.=+.++|+++|. |||.   ++...|...+..- =.-.++--|.+
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~p-~r~ig~Hff~P  476 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSRP-EKVIGMHYFSP  476 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-cceEEEeccCC
Confidence            999999999888877666666667789998775 4433   5566777776432 22356766653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.05  E-value=0.0026  Score=67.07  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=77.6

Q ss_pred             ceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhh
Q 020160          159 KRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAA  208 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~  208 (330)
                      ++|+|||.|.||..+|..+. ..|++|+.+|.+++..                .+             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999987 5899999999876420                00             0112344 4679


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCC
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFEN  274 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~  274 (330)
                      .||+|+=++|...+.+.-+-++.=+.++++++|....++  +....|..++.. .++  .++--|.+
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--~g~HffnP  446 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENV--IGLHYFSP  446 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccE--EEEecCCc
Confidence            999999999988887766656666778888877543332  445566666643 333  56665543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02477 glutamate dehydrogenase

Probab=97.04  E-value=0.011  Score=58.23  Aligned_cols=105  Identities=21%  Similarity=0.232  Sum_probs=71.1

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEE-CCCCCC--CC------------------CCC--CCCCHHHH-hh
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN-SRNKKP--SV------------------TYP--FYPDVCEL-AA  208 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~~~--~~------------------~~~--~~~~l~el-l~  208 (330)
                      |.++.|++|.|.|||++|+.+|+.|...|++|++. |.+..-  ..                  ++.  ...+.+++ ..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            45789999999999999999999999999999844 433110  00                  000  01122332 34


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .||+++-|.     ..+.|+++...+++ -.+++-.+-+.+ .. +-.+.|+++.|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence            688887654     45678888888875 457778888887 33 345777777764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.03  E-value=0.011  Score=57.49  Aligned_cols=148  Identities=16%  Similarity=0.177  Sum_probs=97.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------------CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------VT-------------YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~ell~~aDvV  213 (330)
                      ++|.|+|.|-+|...+..+..+|++|+++|..+.+.            ++             .....+.++.++.+|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            589999999999999999999999999998765420            00             12235677889999999


Q ss_pred             EEeccCCcccccccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe-cCCCCCCCCc----
Q 020160          214 IICCALTDQTHHLIN--------KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD-VFENEPDVPE----  280 (330)
Q Consensus       214 ~l~~P~t~~t~~li~--------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~~~----  280 (330)
                      ++++|..+...+-++        ++..+.++..+++|+=|.-.+=-.+.+.+-+....-.. -.+ ++.+|=+...    
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~  159 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY  159 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence            999987665455444        44566677779999988866655666665554443221 222 3455544322    


Q ss_pred             ccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160          281 QLFALDNVVLSPHSAVFTPESFKDVCELAVA  311 (330)
Q Consensus       281 ~L~~~~nvilTPHia~~t~~~~~~~~~~~~~  311 (330)
                      ..+.-+++++    |..+.++.+.+.++...
T Consensus       160 D~~~PdRIVi----G~~~~~a~~~~~ely~~  186 (414)
T COG1004         160 DFLYPDRIVI----GVRSERAAAVLRELYAP  186 (414)
T ss_pred             hccCCCeEEE----ccCChhHHHHHHHHHhh
Confidence            3445567774    55555444444444333

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.02  E-value=0.0012  Score=54.24  Aligned_cols=59  Identities=31%  Similarity=0.420  Sum_probs=43.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCCCCCCHHHHhhcCCEEEEec
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------------VTYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .+|+|+|+ |+||+.+++.+.. -|+++. ++++.....             .+.....++++++..+|+++-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            47999999 9999999999987 788864 566665211             12334578999999999887765

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.01  E-value=0.0013  Score=62.53  Aligned_cols=111  Identities=16%  Similarity=0.213  Sum_probs=69.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.+|..+|..+...|. +|..+|.......             ..    ....+.++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988776 8999988543211             00    11245665 79999999998732


Q ss_pred             cc---cc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE--Ee
Q 020160          221 DQ---TH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGC--LLRGEIGGAG--LD  270 (330)
Q Consensus       221 ~~---t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~a--L~~g~i~ga~--lD  270 (330)
                      ..   +|        .++.  .+.+....+.+++|+++-..=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            21   11        1111  112333457889999865433333334444  4445666665  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.01  E-value=0.0026  Score=58.90  Aligned_cols=99  Identities=20%  Similarity=0.258  Sum_probs=64.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhC---CCEEE-EECCCCCCC----CCCCCCCCHHHH-hhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF---GCCVS-YNSRNKKPS----VTYPFYPDVCEL-AANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~~~~~~~~----~~~~~~~~l~el-l~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|||||||.||+.+++.+..-   ++++. ++++.+...    .....+.+++++ ....|+|+=|.... ..+.    
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e----   77 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-AIAE----   77 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-HHHH----
Confidence            6899999999999999998753   35554 455554221    123446789997 57899999887532 2221    


Q ss_pred             HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcC
Q 020160          230 QVLLALGKKGVIINVGRGAIID---EKEMVGCLLRG  262 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd---~~aL~~aL~~g  262 (330)
                      -..+-++.|.-++=.|-|.+-|   ++.|.++.+++
T Consensus        78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            1223345677777777888887   44555555543

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.00  E-value=0.0027  Score=67.13  Aligned_cols=110  Identities=16%  Similarity=0.153  Sum_probs=78.7

Q ss_pred             ceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCCC----------------C-------------CCCCCCHHHHhh
Q 020160          159 KRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSV----------------T-------------YPFYPDVCELAA  208 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~ell~  208 (330)
                      ++|+|||.|.||..+|..+. ..|++|..+|.+++...                +             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 78999999998754200                0             0112344 4579


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE  273 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~  273 (330)
                      .||+|+=++|.+.+.+.-+-++.=+.++|+++|...++  -+....|.+.+.. .++  .++--|.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS--~l~i~~la~~~~~p~r~--ig~Hff~  450 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTS--SLPIGQIAAAAARPEQV--IGLHYFS  450 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHHhcCcccce--EEEecCC
Confidence            99999999998888776555666677899998865443  3556667776643 233  5666554

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.99  E-value=0.001  Score=67.13  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC-CCCCCHHHH--hhcCCEEEEeccCCc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY-PFYPDVCEL--AANSDVLIICCALTD  221 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~-~~~~~l~el--l~~aDvV~l~~P~t~  221 (330)
                      +.++.|++++|+|.|.+|++++..+...|++|.+++|+..+..    .. ....+++++  +.++|+|++|+|..-
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~  402 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSV  402 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCC
Confidence            4467899999999999999999999999999999988654211    00 011122222  568899999998653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.98  E-value=0.00063  Score=54.75  Aligned_cols=100  Identities=25%  Similarity=0.331  Sum_probs=64.7

Q ss_pred             eEEEEecChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCCCCCCHHHHhh--cCCEEEEeccCCcccccccc
Q 020160          160 RVGIVGLGSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYPFYPDVCELAA--NSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++||||+|.+|+.....+...  ++++. ++|+++...      .+...+.+++++++  +.|+|++++|........  
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~--   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA--   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence            799999999999999888766  55664 678775431      24446789999998  799999999875444322  


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCc
Q 020160          229 KQVLLALGKK-GVIINVG-RGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       229 ~~~l~~mk~g-ailIN~~-rg~~vd~~aL~~aL~~g~i  264 (330)
                      ...++   .| .+++.-- --++-+.+.|.++.++.+.
T Consensus        80 ~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~  114 (120)
T PF01408_consen   80 KKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGV  114 (120)
T ss_dssp             HHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence            23333   33 4555521 1233445556666655443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.97  E-value=0.0029  Score=66.90  Aligned_cols=110  Identities=14%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------------CCCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------------YPFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------------~~~~~~l~ell~~  209 (330)
                      ++|+|||.|.||..+|..+...|++|+.+|++++..                .+             .....++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            589999999999999999999999999999876421                00             0112344 45799


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE  273 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~  273 (330)
                      ||+|+=++|..-+.+.-+-++.=+.++|+++|-...+  -++..+|...++. .++  .++=-|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS--~l~i~~ia~~~~~p~r~--ig~Hff~  453 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTS--TISISLLAKALKRPENF--CGMHFFN  453 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCC--CCCHHHHHhhcCCcccE--EEEecCC
Confidence            9999999998888776555666677899988754433  3556667776643 233  4554443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.92  E-value=0.0015  Score=62.76  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|++.+..          +.  ....++++++.+||+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            35799999999999999888874 554 7899999865311          12  12468889999999999998764  


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 020160          223 THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~  245 (330)
                       ..++..+.   +++|+.+.-++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             34665543   57887666643

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.91  E-value=0.002  Score=60.02  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=61.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC-----C--CCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS-----V--TYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~-----~--~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|||||+|.||+.+++.+... ++++. ++++.....     .  +...+.+++++-...|+|+.|.|.....+     
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e-----   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKE-----   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHH-----
Confidence            4899999999999999998865 56653 333322110     1  22345678887456999999998653322     


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020160          230 QVLLALGKKGVIINVGRGAIIDE---KEMVGCLLRGEI  264 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~---~aL~~aL~~g~i  264 (330)
                      -....++.|.-++-.+-|.+.|.   +.|.++.+++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            22333445554554555555543   445666655543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.90  E-value=0.011  Score=55.80  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC--CCCCCCCCCCCHHHHhhcCCEEEEeccCCcccc---c------
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK--KPSVTYPFYPDVCELAANSDVLIICCALTDQTH---H------  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~---~------  225 (330)
                      .|++++|||-=.=-..++++|.+.|++|..+.-..  ....+.....+.+++++++|+|++-+|.+.+..   .      
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            37899999998888999999999999997543322  222344555577889999999999888754321   1      


Q ss_pred             -cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          226 -LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       226 -li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       -++.+.++.|+++..++ +|.+.   .. +-+.+.+.++.
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~  116 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK  116 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe
Confidence             13578899999998444 33332   22 33556677775

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.90  E-value=0.0033  Score=60.04  Aligned_cols=83  Identities=18%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC---------CC--CCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV---------TY--PFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      -++++|||.|..|+.-++.+.. +.. +|.+|+|++....         +.  ....+.++.+++||+|+.++|.+   .
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence            4799999999999998887764 333 7899999876421         12  12468899999999999987644   4


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                      -+++.+   .+|||+.++.+|.
T Consensus       205 P~~~~~---~l~~G~hi~~iGs  223 (315)
T PRK06823        205 PLLQAE---DIQPGTHITAVGA  223 (315)
T ss_pred             ceeCHH---HcCCCcEEEecCC
Confidence            677665   4689999999984

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.0021  Score=61.77  Aligned_cols=58  Identities=29%  Similarity=0.363  Sum_probs=46.7

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC-------CCCC---CCHHHHhhcCCEEEE
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT-------YPFY---PDVCELAANSDVLII  215 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-------~~~~---~~l~ell~~aDvV~l  215 (330)
                      ++||||||-|..|+.++..++.+|++|++.++.+.....       ...+   ..+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999987764321       0112   257789999999975

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.88  E-value=0.0028  Score=57.03  Aligned_cols=91  Identities=24%  Similarity=0.291  Sum_probs=61.9

Q ss_pred             ceEEEEecChHHHHHHHHHHh--CCCE-EEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--FGCC-VSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--~G~~-V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .+|||||+|.||+.+.+.++.  .+++ +.+||++.++..      +.....+++|+++..|+++=|... +..+..   
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~---   76 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREY---   76 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHH---
Confidence            479999999999999999984  2354 578888876532      222246899999999999887642 233322   


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                       ..+.+|.|--+|=+|-|.+.|+.-
T Consensus        77 -~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          77 -VPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             -hHHHHhcCCCEEEEechhccChHH
Confidence             233456665566666788876554

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.80  E-value=0.0029  Score=61.88  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=65.1

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CC-C-EEEEECCCCCCCC-----------C---CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FG-C-CVSYNSRNKKPSV-----------T---YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G-~-~V~~~~~~~~~~~-----------~---~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      -+++||||.|..++.-++.+.. +. . +|.+|+|++....           +   .....+.++.+++||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4799999999999999988775 42 4 7899999875311           1   223578999999999999998765


Q ss_pred             c---cccccccHHHHhcCCCCcEEEEcCCC
Q 020160          221 D---QTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       221 ~---~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +   .+.-++..+   .+|||+.++.+|.-
T Consensus       235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~  261 (379)
T PRK06199        235 TGDPSTYPYVKRE---WVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence            4   344677654   46899988877653

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.79  E-value=0.011  Score=58.89  Aligned_cols=105  Identities=15%  Similarity=0.097  Sum_probs=68.4

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---CCC---------------------------CCCCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---VTY---------------------------PFYPD  202 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~---------------------------~~~~~  202 (330)
                      |.+|.|+++.|.|+|++|...|+.|..+|++|++++.+....   .+.                           ....+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            567999999999999999999999999999998754421110   000                           00112


Q ss_pred             HHHHh-hcCCEEEEeccCCccccccccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          203 VCELA-ANSDVLIICCALTDQTHHLINKQVLLALGK-KG-VIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       203 l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~-ga-ilIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .++++ ..||+++-|     .+++.|+++...+++. |. +++--+.| .+..++. +.|.++.|
T Consensus       303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI  360 (444)
T PRK14031        303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKI  360 (444)
T ss_pred             CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCc
Confidence            33432 458887655     3567888888888864 44 44444555 6666655 44555544

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0037  Score=59.95  Aligned_cols=83  Identities=16%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -+++||||.|..+..-++.++. ++. +|.+|+|+++...          +  .....+.++.++.||+|+.++|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            4689999999999999998874 555 6889999876421          1  2346789999999999999998765  


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                       -++..+.   +|||+.+..+|.
T Consensus       208 -Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 -PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             -CeecHhh---cCCCcEEEecCC
Confidence             5666654   579999999984

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.77  E-value=0.0027  Score=56.68  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|.+++|.|||+|.+|..+|+.|...|. +++.+|+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45899999999999999999999999998 78888765

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.76  E-value=0.0025  Score=59.08  Aligned_cols=110  Identities=18%  Similarity=0.238  Sum_probs=71.1

Q ss_pred             EEEEec-ChHHHHHHHHHHhCC----CEEEEECCCCCCCC-----------CC-----CCCCCHHHHhhcCCEEEEeccC
Q 020160          161 VGIVGL-GSIGSEVAKRLEAFG----CCVSYNSRNKKPSV-----------TY-----PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       161 vgIiG~-G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~-----------~~-----~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      |+|||. |.+|..+|..+...|    .+|..+|...+...           ..     ....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998777    68999998764321           00     1124567889999999996521


Q ss_pred             C--c-ccc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEEE-EecC
Q 020160          220 T--D-QTH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGAG-LDVF  272 (330)
Q Consensus       220 t--~-~t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga~-lDV~  272 (330)
                      .  + .++        .++.  .+.+....|.+++||++  ..+|.-+  +.+.  +...++.|.+ +|..
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            1  1 011        0110  22344455899999995  4455443  4344  4567788888 8864

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.75  E-value=0.038  Score=49.35  Aligned_cols=41  Identities=34%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       151 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |...++.|+++.|||.|.+|...++.|...|.+|+++++..
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45567999999999999999999999999999999998754

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.74  E-value=0.0066  Score=60.48  Aligned_cols=106  Identities=15%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEE-CCCCCC--------C-------------CCCC-----CCCCHHH
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN-SRNKKP--------S-------------VTYP-----FYPDVCE  205 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~~~--------~-------------~~~~-----~~~~l~e  205 (330)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|++. |.+..-        .             .++.     ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            45689999999999999999999999999999877 421100        0             0000     0113334


Q ss_pred             Hhh-cCCEEEEeccCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          206 LAA-NSDVLIICCALTDQTHHLINKQVLLALG--KKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       206 ll~-~aDvV~l~~P~t~~t~~li~~~~l~~mk--~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++. .||+++-|..     .+.|+.+....++  .-.+++-.+-|.+ .. +-.+.|.++.|.
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~-~A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TP-EAIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CH-HHHHHHHHCCcE
Confidence            443 6898887653     4567777666663  2346777777887 33 345677777664

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.72  E-value=0.006  Score=57.87  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=59.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC-------------CC--CCCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV-------------TY--PFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~-------------~~--~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|||.|.+|+.+|..|...|  .+|..+|+..+...             +.  .....-.+.+++||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            48999999999999999999888  47999998765421             00  011122345799999999876432


Q ss_pred             c---cc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160          222 Q---TH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       222 ~---t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                      .   +| .++  |       .+.+....|.+++|+++  ..+|.
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~  122 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV  122 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence            1   11 111  1       12344456788999986  44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.67  E-value=0.0027  Score=54.48  Aligned_cols=41  Identities=34%  Similarity=0.384  Sum_probs=36.8

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      +|+..+++|+++.|||.|.+|...++.|...|++|+++++.
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            45667899999999999999999999999999999988654

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.65  E-value=0.0066  Score=57.56  Aligned_cols=83  Identities=13%  Similarity=0.122  Sum_probs=62.4

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -+++||||.|..|..-++.+.. +.. +|.+|+|++.+..          +  .....+.++.+.+||+|+.++|.+   
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~---  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD---  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence            5799999999999988887764 444 6899999876421          2  122468999999999999988754   


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..++..+   .+|||+.+.-+|.
T Consensus       194 ~P~~~~~---~l~pg~hV~aiGs  213 (301)
T PRK06407        194 TPIFNRK---YLGDEYHVNLAGS  213 (301)
T ss_pred             CcEecHH---HcCCCceEEecCC
Confidence            4677665   4578988777764

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.64  E-value=0.0067  Score=57.13  Aligned_cols=36  Identities=14%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~  191 (330)
                      +.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            5789999999999999999999999996 99999875

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.63  E-value=0.007  Score=57.78  Aligned_cols=89  Identities=24%  Similarity=0.327  Sum_probs=57.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------CC-------CCCCCHHHHhhcCCEEEEeccC-
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------TY-------PFYPDVCELAANSDVLIICCAL-  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~~-------~~~~~l~ell~~aDvV~l~~P~-  219 (330)
                      ++++|+|||.|.+|..+|-.+...|.  ++..+|.+.....       ..       ....+-.+.+++||+|+++.-. 
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            57899999999999999999988887  7889998655321       00       0011223568999999997533 


Q ss_pred             -Cc-ccc-ccc--c----HH---HHhcCCCCcEEEEcC
Q 020160          220 -TD-QTH-HLI--N----KQ---VLLALGKKGVIINVG  245 (330)
Q Consensus       220 -t~-~t~-~li--~----~~---~l~~mk~gailIN~~  245 (330)
                       .+ .+| .++  |    .+   .+..-.|.+++|+++
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence             11 122 111  1    11   222234688999987

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.61  E-value=0.0065  Score=58.71  Aligned_cols=85  Identities=13%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      -++++|||.|..+..-++.+. -+.. +|.+|+|++....         +  +....++++.+++||+|+.++|.++ ..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence            479999999999988887665 3444 6889999876421         1  2225789999999999999987432 22


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                      -++..+   .+|||+.+.-+|.
T Consensus       208 Pvl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             ceecHH---HcCCCcEEEecCC
Confidence            456554   4689998887663

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.59  E-value=0.0075  Score=60.04  Aligned_cols=142  Identities=24%  Similarity=0.345  Sum_probs=85.6

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---------CCCCCC--CCHHHHhhcCCEEEEeccCCcccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------VTYPFY--PDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      ..|++|.|+|+|.-|.++|+.|+..|++|+++|.++...         .+....  ....+....+|+|+.. |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            459999999999999999999999999999999776651         111111  1122568889999886 4333333


Q ss_pred             cccc------------HHHHhcC-CCCcEEEEcC-CCcccCHHHHHHHHHc--------CCceEEEEecCCCCCCCCc--
Q 020160          225 HLIN------------KQVLLAL-GKKGVIINVG-RGAIIDEKEMVGCLLR--------GEIGGAGLDVFENEPDVPE--  280 (330)
Q Consensus       225 ~li~------------~~~l~~m-k~gailIN~~-rg~~vd~~aL~~aL~~--------g~i~ga~lDV~~~EP~~~~--  280 (330)
                      .++.            -+.+-+. ++..++-=|| -|+--...-+...|++        |.|...++|+.++++.++-  
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~V  163 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPADVYV  163 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCCCCEEE
Confidence            3222            1223332 2333444444 5776555555555554        4677888999987442211  


Q ss_pred             -c--cccCCce-EEcCCCCCCC
Q 020160          281 -Q--LFALDNV-VLSPHSAVFT  298 (330)
Q Consensus       281 -~--L~~~~nv-ilTPHia~~t  298 (330)
                       +  =|++..+ -+.|++|-.+
T Consensus       164 lElSSfQL~~~~~~~P~iavil  185 (448)
T COG0771         164 LELSSFQLETTSSLRPEIAVIL  185 (448)
T ss_pred             EEccccccccCccCCccEEEEe
Confidence             1  1233333 5677776543

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.58  E-value=0.012  Score=54.59  Aligned_cols=62  Identities=26%  Similarity=0.318  Sum_probs=46.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhC-CCEEE-EECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .+|+|+|+ |.||+.+++.+... ++++. ++++.+....     +...+.+++++++.+|+|+.++|..
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~   71 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE   71 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH
Confidence            48999998 99999999998764 68875 4676553321     2334578999998999999777533

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.006  Score=60.36  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=63.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC-----CCCCCHHHHhhcCCEEEEeccCCccccc-------
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-----PFYPDVCELAANSDVLIICCALTDQTHH-------  225 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~ell~~aDvV~l~~P~t~~t~~-------  225 (330)
                      .++|.|||+|.+|.++|+.|+..|++|.++|++.......     ......+.+..++|+|+.+.+..+. ..       
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~-~~~l~~A~~   81 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE-HPWVQAAIA   81 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC-cHHHHHHHH
Confidence            4689999999999999999999999999999765432110     1112333445789988877654432 22       


Q ss_pred             ----cccHHH--Hhc--CCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020160          226 ----LINKQV--LLA--LGK-KGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       226 ----li~~~~--l~~--mk~-gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                          +++...  +..  +.+ ..+=|--+-|+.--.+=+...|+.
T Consensus        82 ~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         82 SHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence                222211  111  112 234444455776666666677764

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.55  E-value=0.0019  Score=52.67  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             eEEEEe-cChHHHHHHHHHHh-CCCEEE-EECCCCCCCC----CCC---------CCCCHHHHhhcCCEEEEeccCCccc
Q 020160          160 RVGIVG-LGSIGSEVAKRLEA-FGCCVS-YNSRNKKPSV----TYP---------FYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       160 ~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~~----~~~---------~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      +|+||| .|.+|+.+.++|.. ..+++. ++.++.....    ...         ....-.+.+.++|+|++|+|.....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            689999 99999999999986 345654 4444441211    000         0111224459999999999865433


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +..  ...   +++|..+|+.|.-
T Consensus        81 ~~~--~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   81 ELA--PKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             HHH--HHH---HHTTSEEEESSST
T ss_pred             HHH--HHH---hhCCcEEEeCCHH
Confidence            321  222   5789999998753

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.49  E-value=0.0031  Score=59.19  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C----CCCC---CCHHHHhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T----YPFY---PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~----~~~~---~~l~ell~~aDvV~l~~P~t  220 (330)
                      +.|+++.|||.|.+|++++..|...|+ +|.+++|+.++..      +    ....   .++.+.+.++|+|+.++|..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            578999999999999999999999998 6999999764321      0    0001   12334456778887777754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.44  E-value=0.0091  Score=56.50  Aligned_cols=58  Identities=26%  Similarity=0.283  Sum_probs=43.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC--C--CCCCHHHHhhcCCEEEEec
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY--P--FYPDVCELAANSDVLIICC  217 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~--~--~~~~l~ell~~aDvV~l~~  217 (330)
                      ++|+|||.|.+|..+|..+...|. +|..+|+..+...             ..  .  ...+. +.++.||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence            689999999999999999987665 8999998654311             00  0  11344 4589999999986

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.44  E-value=0.015  Score=49.78  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             CCceEEEEe--cChHHHHHHHHHHhCCCEEEEECCCCC--CC----------------CCCCCCCCHHHHhhcCCEEEEe
Q 020160          157 GGKRVGIVG--LGSIGSEVAKRLEAFGCCVSYNSRNKK--PS----------------VTYPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       157 ~g~~vgIiG--~G~IG~~~A~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~ell~~aDvV~l~  216 (330)
                      .|+||++||  -+++.++++..+..||+++.+..+..-  +.                .......++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  389999999999999999988877551  11                0123357899999999998775


Q ss_pred             ccCC---cc--------ccccccHHHHhcCCCCcEEEEcC
Q 020160          217 CALT---DQ--------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       217 ~P~t---~~--------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .-.+   .+        ....++.+.++.+|++++|.-+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            4331   11        11467889999999999999885

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.44  E-value=0.0075  Score=57.73  Aligned_cols=61  Identities=21%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~  217 (330)
                      +..+||+|||.|.+|..+|..+...|. +|..+|.+++...             +.    ....+. +.++.||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            456899999999999999999888785 8889998775311             10    112355 5679999999976

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.39  E-value=0.0091  Score=57.58  Aligned_cols=38  Identities=32%  Similarity=0.423  Sum_probs=33.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35899999999999999999999999998 788777753

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.0075  Score=60.41  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=67.9

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCC--CCHHHHhhcCCEEEEeccCCccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFY--PDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~--~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      +.+++++|+|+|..|.++|+.|+..|++|.++|.++....          +....  ....+.+.++|+|+.. |.-+.+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~   90 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID   90 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence            6789999999999999999999999999999997653210          21111  1223556889998886 544433


Q ss_pred             cccc-----------cH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          224 HHLI-----------NK-QVL-LALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       224 ~~li-----------~~-~~l-~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ...+           ++ +.+ +..+...+-|--+.|+.--.+-+...|+..
T Consensus        91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~  142 (458)
T PRK01710         91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE  142 (458)
T ss_pred             chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            2222           11 122 222323455555668877777777777643

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.38  E-value=0.018  Score=53.01  Aligned_cols=88  Identities=15%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK  238 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g  238 (330)
                      .++-|+|.|.+++++|+.++.+|++|+++|.++......        ....++.+....|          .+.+..+.+.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~  162 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPED--------LPDGVATLVTDEP----------EAEVAEAPPG  162 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccccc--------CCCCceEEecCCH----------HHHHhcCCCC
Confidence            489999999999999999999999999998765421110        0123332221111          2233345567


Q ss_pred             cEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          239 GVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       239 ailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      ..+|=+.++.-.|.+.|..+|.+...
T Consensus       163 t~vvi~th~h~~D~~~L~~aL~~~~~  188 (246)
T TIGR02964       163 SYFLVLTHDHALDLELCHAALRRGDF  188 (246)
T ss_pred             cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence            77777789999999999999954443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.38  E-value=0.023  Score=56.92  Aligned_cols=107  Identities=20%  Similarity=0.286  Sum_probs=75.9

Q ss_pred             cCCceEEEEec----ChHHHHHHHHHHhCCC--EEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          156 LGGKRVGIVGL----GSIGSEVAKRLEAFGC--CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       156 l~g~~vgIiG~----G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++-++|.|||.    |++|..+.+.++..|+  +|+.+++......+...+.+++|+-...|++++++|.. .+..++. 
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~-   82 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVE-   82 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHH-HHHHHHH-
Confidence            56689999999    8899999999999887  68888877665567777889999988899999999954 3333432 


Q ss_pred             HHHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHcCCce
Q 020160          230 QVLLALGKKGVII-NVGRGAI-----IDEKEMVGCLLRGEIG  265 (330)
Q Consensus       230 ~~l~~mk~gailI-N~~rg~~-----vd~~aL~~aL~~g~i~  265 (330)
                      +. ....-.+++| .-+-++.     -.++++.+..+++.+.
T Consensus        83 e~-~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir  123 (447)
T TIGR02717        83 EC-GEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR  123 (447)
T ss_pred             HH-HhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence            22 3344444544 3332232     2357788888777665

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.35  E-value=0.00098  Score=60.00  Aligned_cols=132  Identities=19%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------C-----CC-------------CCCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------V-----TY-------------PFYP  201 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~-----~~-------------~~~~  201 (330)
                      ..=+.|+|||.|.||+.+|+.+...|+.|..+|++.+..                +     ..             ....
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            345789999999999999999999999999999876520                0     00             0123


Q ss_pred             CHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc
Q 020160          202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE  280 (330)
Q Consensus       202 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~  280 (330)
                      ++.++++.+|+|+=++-.+-+.+.=+-++.=..+|+.+++. |+|+   +....+..+++.... .++|-.|.+-|    
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP----  160 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP----  160 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch----
Confidence            55667777887776654443332222223333467777654 5555   445667777766544 37898888766    


Q ss_pred             ccccCCceEEcCCCCC
Q 020160          281 QLFALDNVVLSPHSAV  296 (330)
Q Consensus       281 ~L~~~~nvilTPHia~  296 (330)
                       ...+=.||=|+..+-
T Consensus       161 -vMKLvEVir~~~TS~  175 (298)
T KOG2304|consen  161 -VMKLVEVIRTDDTSD  175 (298)
T ss_pred             -hHHHhhhhcCCCCCH
Confidence             233334555554433

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.31  E-value=0.032  Score=55.60  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCCC--CCCC----------------------------CCCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKKP--SVTY----------------------------PFYP  201 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~--~~~~----------------------------~~~~  201 (330)
                      +.++.|+|+.|=|+|++|+..|+.|..+|++|+. .|.+..-  ..+.                            ..+.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            5679999999999999999999999999999984 4433100  0000                            0001


Q ss_pred             CHHHHh-hcCCEEEEeccCCccccccccHHHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHcCCce
Q 020160          202 DVCELA-ANSDVLIICCALTDQTHHLINKQVLLAL-GKKGV-IINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       202 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~m-k~gai-lIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +-++++ -.||+.+-|.     +.+.|+.+..+.+ +.++. ++--+-+.+ ..+ -.+.|.++.|.
T Consensus       312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~  371 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI  371 (454)
T ss_pred             CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE
Confidence            112222 3578776553     5667887776655 44454 444455554 333 44666666654

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.31  E-value=0.015  Score=57.77  Aligned_cols=106  Identities=15%  Similarity=0.160  Sum_probs=69.0

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE--------ECCCCCCC-C--------------------CC--CCCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY--------NSRNKKPS-V--------------------TY--PFYP  201 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~~~~~~~~-~--------------------~~--~~~~  201 (330)
                      |.++.|+||.|=|+|++|+..|+.|..+|++|++        |++..-.. .                    ++  ....
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            5579999999999999999999999999999988        55321110 0                    00  0011


Q ss_pred             CHHHHh-hcCCEEEEeccCCccccccccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          202 DVCELA-ANSDVLIICCALTDQTHHLINKQVLLALG--KKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       202 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk--~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +-++++ ..||+++-|.     +.+.|+.+....+.  .-.+++-.+-| .+..+|- +.|.++.|.
T Consensus       303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~  362 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL  362 (445)
T ss_pred             CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence            223333 3488776554     66778887777772  23466666777 5555543 666666664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.30  E-value=0.0023  Score=53.80  Aligned_cols=106  Identities=21%  Similarity=0.249  Sum_probs=69.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCC-----C---------CCCCHHHHhhcCCEEEEeccCCcc
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTY-----P---------FYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~-----~---------~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      |.|+|.|.||.-+|.+|+..|.+|..+.++....    .+.     .         ......+.....|+|++++...+ 
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~-   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ-   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG-
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc-
Confidence            6899999999999999999999999988876100    010     0         01112346788999999986543 


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                      ++..+. .....+++++.++-.--| +-.++.+.+.+...++.++..
T Consensus        80 ~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   80 LEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             HHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred             hHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence            343433 355666777677766555 445677777775666654443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.30  E-value=0.0084  Score=54.42  Aligned_cols=147  Identities=23%  Similarity=0.175  Sum_probs=83.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CCC-----------------C--C--
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SVT-----------------Y--P--  198 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~--  198 (330)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-.             ..+                 .  .  
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            35899999999999999999999999998 66666543210             000                 0  0  


Q ss_pred             --C--CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          199 --F--YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       199 --~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                        .  ..++.++++++|+|+.|+. +..++.++++...+   .+.-+|.++-.              | ..|.. -++.+
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~--------------g-~~g~v-~~~~p  156 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVL--------------G-FEGQV-TVFIP  156 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEec--------------c-CEEEE-EEECC
Confidence              0  1234567888998888764 56677777654443   24455665421              1 12221 12211


Q ss_pred             C--CCCCcccccC-Cce-EEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          275 E--PDVPEQLFAL-DNV-VLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       275 E--P~~~~~L~~~-~nv-ilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                      .  |- ..-++.. +.- .-++..++...-...-++.+++..+.+++.|.+
T Consensus       157 ~~~~c-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~  206 (228)
T cd00757         157 GEGPC-YRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG  206 (228)
T ss_pred             CCCCC-ccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence            1  10 0011111 000 122334455544566777888888999998874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.29  E-value=0.0075  Score=55.50  Aligned_cols=104  Identities=25%  Similarity=0.327  Sum_probs=69.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEE--------CCCCCC---------C-CC-CCCC----------CCHH-
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN--------SRNKKP---------S-VT-YPFY----------PDVC-  204 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~--------~~~~~~---------~-~~-~~~~----------~~l~-  204 (330)
                      ++.|+++.|-|+|.+|+.+|+.|...|++|++.        ++..-.         . .. ...+          .+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        221110         0 01 1111          1222 


Q ss_pred             HHh-hcCCEEEEeccCCccccccccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          205 ELA-ANSDVLIICCALTDQTHHLINKQVLL-ALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       205 ell-~~aDvV~l~~P~t~~t~~li~~~~l~-~mk~ga-ilIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +++ ..||+++-|.     ..+.|+.+... .+++++ +++-.+.+.+- .++.. .|.++.|.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence            555 5799999874     34568888888 787665 55566666664 44544 88888875

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.28  E-value=0.012  Score=56.82  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=54.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhC-CCEEE-EECCCCCCCC------C---C--C-CCC--CHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV------T---Y--P-FYP--DVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~------~---~--~-~~~--~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|+|. |.+|+.+++.|... +.++. .++++.....      +   .  . ...  +.++++.++|+|++|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            47999998 99999999999976 66777 3343321110      1   0  0 011  45566678999999999653


Q ss_pred             cccccccHHHHhc-CCCCcEEEEcCCC
Q 020160          222 QTHHLINKQVLLA-LGKKGVIINVGRG  247 (330)
Q Consensus       222 ~t~~li~~~~l~~-mk~gailIN~~rg  247 (330)
                      .      .+.... .+.|..+|+.|..
T Consensus        81 s------~~~~~~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        81 S------AELAPELLAAGVKVIDLSAD  101 (346)
T ss_pred             H------HHHHHHHHhCCCEEEeCChh
Confidence            3      233332 2568899998843

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.25  E-value=0.019  Score=54.48  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------CCCC-----------CCCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------SVTY-----------PFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----------~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|+|.|.||.-+|-+|...|.+|..+.|+...      ..+.           .......+....+|+|++++=.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            58999999999999999999999999988886421      1111           00011112346789999987433 


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160          222 QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                      ++...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            233332 3455667788877766444 345666777776666665443

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.23  E-value=0.01  Score=57.77  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=44.2

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC---CCCC---CHHHHhhcCCEEEE
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY---PFYP---DVCELAANSDVLII  215 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~---~~~~---~l~ell~~aDvV~l  215 (330)
                      .++|||||-|..|+.+++.++.+|++|+++++++....    ..   ..+.   .+.++++.||+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            37899999999999999999999999999988764321    00   0112   36678889998764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.20  E-value=0.026  Score=55.77  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=63.2

Q ss_pred             ccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+......  ......++++.+++||.|+++.+.. +
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~-~  388 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHD-E  388 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCH-H
Confidence            368999999998          55778999999999999999999754321  1122468889999999999998654 3


Q ss_pred             ccccccHHHHh-cCCCCcEEEEc
Q 020160          223 THHLINKQVLL-ALGKKGVIINV  244 (330)
Q Consensus       223 t~~li~~~~l~-~mk~gailIN~  244 (330)
                      .+. ++-+.+. .|+ ..+++++
T Consensus       389 ~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       389 FKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             Hhc-cCHHHHHHhcC-CCEEEeC
Confidence            333 3434443 455 4578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.15  E-value=0.095  Score=49.81  Aligned_cols=90  Identities=12%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----------CC--CCCCCCHHHHhhcCCEEEEec----
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----------VT--YPFYPDVCELAANSDVLIICC----  217 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~--~~~~~~l~ell~~aDvV~l~~----  217 (330)
                      +.|.+|+++|= +++.++++..+..+|++|.+..+..-..           .+  +....++++.++++|+|..-.    
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~  229 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM  229 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence            67899999996 8899999999999999998877643221           11  123578999999999998741    


Q ss_pred             cCCc---c-----ccccccHHHHhcCCCCcEEEEcC
Q 020160          218 ALTD---Q-----THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 P~t~---~-----t~~li~~~~l~~mk~gailIN~~  245 (330)
                      ....   +     -..-++++.++.+|+++++.-+.
T Consensus       230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl  265 (304)
T PRK00779        230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL  265 (304)
T ss_pred             ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence            1100   0     12345666677777777766653

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.048  Score=52.01  Aligned_cols=90  Identities=8%  Similarity=0.066  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCC-----------------------CC-------------CCCCC--CHHHHhhcC
Q 020160          169 IGSEVAKRLEAFGCCVSYNSRNKKPS-----------------------VT-------------YPFYP--DVCELAANS  210 (330)
Q Consensus       169 IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------------~~-------------~~~~~--~l~ell~~a  210 (330)
                      ||..+|..+...|++|..+|++++..                       .+             .....  +..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            68899999999999999999987310                       00             00111  255788999


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      |+|+-++|.+.+.+.-+-.+..+.++|+++|..  .-+.+....|.+.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS--ntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAS--TTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE--ccccCCHHHHHhhcC
Confidence            999999999999887776777788999999844  445566677777664

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.12  E-value=0.0045  Score=56.22  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------CC-------CCCCCHHHH-hhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TY-------PFYPDVCEL-AANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~-------~~~~~l~el-l~~aDvV~l~~P~t~  221 (330)
                      |++.|+|+|.+|..+|+.|...|++|+..++.+....       ..       .....|.++ +.++|+++.++..+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            5899999999999999999999999999888764311       11       111235554 788999998886543

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.09  E-value=0.022  Score=55.78  Aligned_cols=103  Identities=26%  Similarity=0.366  Sum_probs=70.8

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC------------------CCC------CCCCCCCHHHHh-
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK------------------PSV------TYPFYPDVCELA-  207 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~------------------~~~------~~~~~~~l~ell-  207 (330)
                      +.++.|+||.|=|+|++|+..|+.|...|.+|++++.+..                  ...      +..+ .+-++++ 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~-i~~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEY-ITNEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceE-cccccccc
Confidence            4458999999999999999999999999999998876654                  100      1111 1224544 


Q ss_pred             hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      ..||+++=|     .+.+.|+.+..++++-. +++-.+-|.+- .+|--..++.|-
T Consensus       281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGI  329 (411)
T COG0334         281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGI  329 (411)
T ss_pred             ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCC
Confidence            358877544     46778888888888865 77788887765 333333334443

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.07  E-value=0.02  Score=55.31  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=42.6

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEEE-ECCCCCC---------C---------------CCCCCCCCHHHHhhcCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSY-NSRNKKP---------S---------------VTYPFYPDVCELAANSDV  212 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~-~~~~~~~---------~---------------~~~~~~~~l~ell~~aDv  212 (330)
                      .+|||+|+|+||+.+++.+.. -++++.+ +++.+..         .               .+.....++++++..+|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            379999999999999998874 4678765 4433210         0               011112467788889999


Q ss_pred             EEEeccCC
Q 020160          213 LIICCALT  220 (330)
Q Consensus       213 V~l~~P~t  220 (330)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998754

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.07  E-value=0.052  Score=51.60  Aligned_cols=61  Identities=23%  Similarity=0.313  Sum_probs=48.4

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCCCEEEEECCCCCCCCC---CCCCCCHHHHhhcCCEEEEe
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYNSRNKKPSVT---YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~ell~~aDvV~l~  216 (330)
                      +.|++|++||=   +++.++++..+..||++|.+..+..-....   .....++++.++++|+|...
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~  220 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMML  220 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEEC
Confidence            68999999997   599999999999999999887764422111   23457899999999998764

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.06  E-value=0.11  Score=50.09  Aligned_cols=91  Identities=9%  Similarity=0.012  Sum_probs=63.5

Q ss_pred             ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|++|++||=+  ++.++++..+..+|++|.++.+..-..              .+  +....++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            3789999999986  678899999999999998877643211              12  12357899999999999873


Q ss_pred             c----cCC-c--c------ccccccHHHHhcC-CCCcEEEEcC
Q 020160          217 C----ALT-D--Q------THHLINKQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       217 ~----P~t-~--~------t~~li~~~~l~~m-k~gailIN~~  245 (330)
                      .    ... +  .      ....++.+.++.. |++++|.-+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            2    100 0  0      1224677788876 7888888764

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.06  E-value=0.017  Score=52.93  Aligned_cols=37  Identities=32%  Similarity=0.461  Sum_probs=31.8

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35899999999999999999999999997 56666654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.06  E-value=0.0092  Score=54.88  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=31.5

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSR  189 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~  189 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   64 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF   64 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45899999999999999999999999997 6666654

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.04  E-value=0.043  Score=51.06  Aligned_cols=61  Identities=26%  Similarity=0.306  Sum_probs=43.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------------CCCCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------------VTYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .+|+|+| +|+||+.+++.+.. -++++. ++++.....             .+...+.+++++...+|+|+.+.|.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p   78 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP   78 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence            4899999 69999999999875 578875 466432111             1223346788886679999998853

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.02  E-value=0.01  Score=58.99  Aligned_cols=64  Identities=20%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCC-------CCCCCHHHH-hhcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTY-------PFYPDVCEL-AANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~-------~~~~~l~el-l~~aDvV~l~~P~t~~  222 (330)
                      +++.|+|+|.+|+.+|+.|...|++|.++++++...      .+.       .....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            479999999999999999999999999998865421      111       111234555 7889999999876544

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.02  E-value=0.12  Score=49.01  Aligned_cols=90  Identities=13%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEec-
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIICC-  217 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~~-  217 (330)
                      +.|.+|+++|= +++-++++..+..||++|.+..+..-..              .+  +....++++.++++|+|..-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            68999999995 7899999999999999998876643211              01  123468899999999998742 


Q ss_pred             -cCCc----------cccccccHHHHhcCCCCcEEEEcC
Q 020160          218 -ALTD----------QTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 -P~t~----------~t~~li~~~~l~~mk~gailIN~~  245 (330)
                       ....          .....++++.++.+|+++++.-+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence             0000          012356677777777777776653

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.00  E-value=0.02  Score=54.58  Aligned_cols=108  Identities=20%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC----C-C-CCCHHHHhhcCCEEEEeccC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV----------TY----P-F-YPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~----------~~----~-~-~~~l~ell~~aDvV~l~~P~  219 (330)
                      ..||+|||.|.+|..+|..+...|.  ++..+|...+...          .+    . . ..+.+ .+++||+|+++.-.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence            3599999999999999999876665  6888887664311          00    1 1 13444 48999999996432


Q ss_pred             --Cc-ccc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEEE
Q 020160          220 --TD-QTH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGAG  268 (330)
Q Consensus       220 --t~-~t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga~  268 (330)
                        .+ .+| .++  |       .+.+....|.+++|+++  ..+|.-+  +.+.  +...++.|.+
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence              21 233 111  1       12344457889999997  4444332  2222  3344555553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.98  E-value=0.011  Score=55.94  Aligned_cols=57  Identities=25%  Similarity=0.222  Sum_probs=41.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEecc
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~P  218 (330)
                      |+|||.|.+|..+|..+...|. +|+.+|++++...             ..    ....+. +.++.||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999886665 9999998764311             00    012344 45899999999763

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.97  E-value=0.016  Score=56.88  Aligned_cols=95  Identities=18%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhC-CCEEEEECCCCCCCCC----C--------CCCCCHHH-HhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAF-GCCVSYNSRNKKPSVT----Y--------PFYPDVCE-LAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~----~--------~~~~~l~e-ll~~aDvV~l~~P~t  220 (330)
                      ...++|+|+|. |.+|+.+.+.|... +++|..+.+.......    .        ....+++. .++++|+|++++|..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            45669999996 99999999999877 6788766543222110    0        00112222 258899999999864


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV  256 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~  256 (330)
                            ...+....|+.|..+|+.|..-..+.++.+
T Consensus       116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y  145 (381)
T PLN02968        116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEY  145 (381)
T ss_pred             ------HHHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence                  234455556678999999876666555433

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.97  E-value=0.015  Score=57.86  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=44.5

Q ss_pred             ceEEEEecChHHHHHHH---HH---HhCCCEEEEECCCCCCCC-----------------CCCCCCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVGLGSIGSEVAK---RL---EAFGCCVSYNSRNKKPSV-----------------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~ell~~aDvV~l  215 (330)
                      .+|+|||.|.+|.+.+-   .+   ...|.+|..||+++....                 ......++.+.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998555   22   334679999998764311                 11124578899999999999


Q ss_pred             eccC
Q 020160          216 CCAL  219 (330)
Q Consensus       216 ~~P~  219 (330)
                      ++|.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9984

linked to 3D####ucture

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.96  E-value=0.024  Score=47.49  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV  240 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai  240 (330)
                      +-|+|.|.+|+++++.++.+|++|+++|++++..             ..++-+. +.+.    ..+  .+.+ .+.++.+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~-------------~~~~~~~-~~~~----~~~--~~~~-~~~~~t~   59 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF-------------PEADEVI-CIPP----DDI--LEDL-EIDPNTA   59 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH----HHH--HHHC--S-TT-E
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc-------------CCCCccE-ecCh----HHH--Hhcc-CCCCCeE
Confidence            4689999999999999999999999998875321             1233221 2221    111  0112 3566666


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160          241 IINVGRGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                      +| +.++.-.|.+.|..+|++ .....|+
T Consensus        60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   60 VV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             EE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             EE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            66 888999999999998887 4443443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.89  E-value=0.013  Score=55.59  Aligned_cols=61  Identities=26%  Similarity=0.282  Sum_probs=45.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCCC-------CC--------CCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSVT-------YP--------FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.+|..+|..+...|  .+|..+|++.....+       ..        ...+. +.++.||+|+++++..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            47999999999999999999888  589999987643211       10        01233 5689999999998864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.85  E-value=0.012  Score=46.91  Aligned_cols=76  Identities=18%  Similarity=0.143  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          168 SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      +-+..+++.|+..|++|.+||+......        +.....++++.++.+|+|+++++.. +.+.+--.+....|+++.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~   95 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPP   95 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSE
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCC
Confidence            3457899999999999999999765321        2334568899999999999998754 444443345667788899


Q ss_pred             EEEEc
Q 020160          240 VIINV  244 (330)
Q Consensus       240 ilIN~  244 (330)
                      ++|++
T Consensus        96 ~iiD~  100 (106)
T PF03720_consen   96 VIIDG  100 (106)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99996

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.83  E-value=0.011  Score=53.12  Aligned_cols=89  Identities=26%  Similarity=0.320  Sum_probs=61.6

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------C--C-CCCCCHHHHhhcCCEEEEeccC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------T--Y-PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~--~-~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +|...++.||++.|||-|.+|..=++.+...|.+|+++++...++.       .  . ...... +.+..+++|+.+++.
T Consensus         4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lviaAt~d   82 (210)
T COG1648           4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDA-EDLDDAFLVIAATDD   82 (210)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccCh-hhhcCceEEEEeCCC
Confidence            3455679999999999999999999999999999999988763211       1  0 011122 233448888877654


Q ss_pred             CccccccccHHHHhcCCCCcEEEEc
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      .+     +|+..+..+++-.++||+
T Consensus        83 ~~-----ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          83 EE-----LNERIAKAARERRILVNV  102 (210)
T ss_pred             HH-----HHHHHHHHHHHhCCceec
Confidence            32     455566666666677776

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.80  E-value=0.022  Score=55.00  Aligned_cols=89  Identities=19%  Similarity=0.231  Sum_probs=55.4

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhC-CCEEEE-ECCCCCCC-C----C-CC-----CCCCHHH-HhhcCCEEEEeccCCccc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVSY-NSRNKKPS-V----T-YP-----FYPDVCE-LAANSDVLIICCALTDQT  223 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~-~~~~~~~~-~----~-~~-----~~~~l~e-ll~~aDvV~l~~P~t~~t  223 (330)
                      ++|+|+|. |.+|+.+++.+... ++++.+ .++..... .    + ..     .+.++++ ...++|+|++|+|.....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            68999997 99999999999876 677654 55332211 0    0 11     1223333 457899999999975332


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCcccCH
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                      + +    .....+.|..+|+.|-.--.+.
T Consensus        83 ~-~----v~~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         83 D-L----APQLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             H-H----HHHHHhCCCEEEECCcccCCCC
Confidence            2 2    1122356899999985444433

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.78  E-value=0.048  Score=50.52  Aligned_cols=97  Identities=22%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             CccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC-----------CCCCCCCCCHHHHhhcCCEEEEeccC
Q 020160          152 LGSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP-----------SVTYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .|.+|+..|++|+|+ |.||..+|+-+.+.+.+....-|....           ..+.....|++..+.+.|+++-....
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            488999999999995 999999999999888876544332111           11223334566555555555444322


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcccCHH
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRGAIIDEK  253 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~  253 (330)
                        .+-..|+.+   .+|||+++|+-++..=||+.
T Consensus       241 --~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         241 --PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             --CCCceechh---hccCCeEEEcCCcCcccccc
Confidence              233456664   47899999999988766654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.76  E-value=0.022  Score=55.68  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..+.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 67777765

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.74  E-value=0.12  Score=48.62  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCC--CCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccc----------
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN--KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHH----------  225 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~----------  225 (330)
                      |++++|||--.=-..+++.|...|++|..+.-.  .....+.....+.++.++++|+|++-+|.+.....          
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            689999998888889999999999998766443  12122444445566679999999999997665321          


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE  273 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  273 (330)
                      -++++.++.|+++++ +-+|.    +..++-++.++..|.  ..|.++
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCe--EEEEEe
Confidence            246889999998665 44443    444555577777774  454433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.73  E-value=0.024  Score=53.26  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------C-CCCCCCHHHH--hhcCCEEEEeccCCc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------T-YPFYPDVCEL--AANSDVLIICCALTD  221 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------~-~~~~~~l~el--l~~aDvV~l~~P~t~  221 (330)
                      ...|+++.|+|.|..+++++..|+..|. +|++++|+.++..         + ........++  +.++|+|++++|..-
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm  202 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM  202 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence            4579999999999999999999999996 7999999875421         1 0011122222  226899999988654


Q ss_pred             cccc---cccHHHHhcCCCCcEEEEcCCCc
Q 020160          222 QTHH---LINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       222 ~t~~---li~~~~l~~mk~gailIN~~rg~  248 (330)
                      .-..   +++   ...++++.++.++--..
T Consensus       203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P  229 (283)
T COG0169         203 AGPEGDSPVP---AELLPKGAIVYDVVYNP  229 (283)
T ss_pred             CCCCCCCCCc---HHhcCcCCEEEEeccCC
Confidence            3321   222   34456666766664433

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.65  E-value=0.044  Score=49.28  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=32.4

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 47777765

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.63  E-value=0.0075  Score=48.21  Aligned_cols=80  Identities=23%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----CCCC---HHH-HhhcCCEEEEeccCCccccccc
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----FYPD---VCE-LAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e-ll~~aDvV~l~~P~t~~t~~li  227 (330)
                      +-|+|+|.+|+.+++.|+..+.+|++.++.+...     .+..    -..+   +.+ -+.++|.|+++.+....+..+ 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~-   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI-   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence            5699999999999999999777999988876431     1111    0122   333 257899999988755444333 


Q ss_pred             cHHHHhcCCCCcEEE
Q 020160          228 NKQVLLALGKKGVII  242 (330)
Q Consensus       228 ~~~~l~~mk~gailI  242 (330)
                       ...++.+.+...++
T Consensus        80 -~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   80 -ALLARELNPDIRII   93 (116)
T ss_dssp             -HHHHHHHTTTSEEE
T ss_pred             -HHHHHHHCCCCeEE
Confidence             45566666655555

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.63  E-value=0.093  Score=49.79  Aligned_cols=89  Identities=21%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             cCCceEEEEecC---hHHHHHHHHHHhCCCEEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVGLG---SIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +.|.+|+++|-|   ++.++++..+..+|++|.+..+..-...          +.  ....++++.++.+|+|..-- ..
T Consensus       148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~  226 (301)
T TIGR00670       148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ  226 (301)
T ss_pred             CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence            789999999985   9999999999999999988776542111          21  23578999999999987632 11


Q ss_pred             cc------------ccccccHHHHhcCCCCcEEEEcC
Q 020160          221 DQ------------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       221 ~~------------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+            ...-++.+.++.++++++|.-+.
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence            00            02234566777777777776553

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.62  E-value=0.026  Score=54.40  Aligned_cols=37  Identities=35%  Similarity=0.466  Sum_probs=33.3

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 78888764

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=95.62  E-value=0.041  Score=52.49  Aligned_cols=91  Identities=22%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             cCCceEEEEecChHHHHHHHHHHh-------CCCEEEEECCCCC--C------------C------C------CCCCCCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEA-------FGCCVSYNSRNKK--P------------S------V------TYPFYPD  202 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~-------~G~~V~~~~~~~~--~------------~------~------~~~~~~~  202 (330)
                      -.-++|+|||.|+.|+++|+.+..       |..+|.-|-+...  .            .      +      ......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            345799999999999999998852       3345544322111  0            0      0      1122468


Q ss_pred             HHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          203 VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       203 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      +.+.+.+||+++..+|.+- +..+ -++...+.|+++..|....|=
T Consensus        99 l~ea~~dADilvf~vPhQf-~~~i-c~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQF-IPRI-CEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCChhh-HHHH-HHHHhcccCCCCeEEEeecce
Confidence            9999999999999999653 3333 367888999999999987763

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.62  E-value=0.17  Score=48.21  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CCC--C--CCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SVT--Y--PFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~~--~--~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ++|.|+|.|.||.-++-+|...|..|+.+.|.+..            ..+  .  .....-.+.+..+|+|++++=.. +
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence            58999999999999999999999888887776630            011  0  11123345667999999987544 3


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc--ccccCCceEEcCCCCCCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE--QLFALDNVVLSPHSAVFT  298 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~--~L~~~~nvilTPHia~~t  298 (330)
                      +...+ +.....+++.+.++-+--| +=.++.+...+...++- .|+..+...-..+.  .......+.+.+..++..
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            34333 4567778888776644333 33344566666555443 23333322111111  344567888888777665

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.61  E-value=0.23  Score=49.34  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             ccCCceEEEEec---ChHHHHHHHHHHhC-CCEEEEECCCCCCC-C---------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVGL---GSIGSEVAKRLEAF-GCCVSYNSRNKKPS-V---------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-~---------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+.|+||++||-   +++..+++..+..+ |++|.+..+..-.. .         +  +....++++.++++|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            478999999998   58999999998876 99998876643211 0         1  2235789999999999987442


Q ss_pred             CCcc----------ccccccHHHHhc-CCCCcEEEEc
Q 020160          219 LTDQ----------THHLINKQVLLA-LGKKGVIINV  244 (330)
Q Consensus       219 ~t~~----------t~~li~~~~l~~-mk~gailIN~  244 (330)
                      -.+.          ....++++.++. .|++++|.-+
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            1010          113456777777 7777777755

>PRK08223 hypothetical protein; Validated

Probab=95.58  E-value=0.045  Score=51.47  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=31.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            35899999999999999999999999997 56666543

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.57  E-value=0.063  Score=54.14  Aligned_cols=99  Identities=14%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             ccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCC---------------------------CC
Q 020160          155 KLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------------------------TY  197 (330)
Q Consensus       155 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------------------------~~  197 (330)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+......                           ..
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999998          56788999999999999999999743211                           01


Q ss_pred             CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020160          198 PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV  256 (330)
Q Consensus       198 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~  256 (330)
                      ....++.+.+++||+|++++... +.+.+--++....|++..+++|. |+ ++|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            22345678999999999998754 34443223345668766688984 54 45665553

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.57  E-value=0.14  Score=49.28  Aligned_cols=91  Identities=8%  Similarity=0.035  Sum_probs=60.9

Q ss_pred             ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|.+|++||-+  ++.++++..+..+|+++.+..+..-..              .+  +....++++.++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4789999999976  689999999999999998877643211              01  22357899999999999874


Q ss_pred             ccCC-------------ccccccccHHHHhcC-CCCcEEEEcC
Q 020160          217 CALT-------------DQTHHLINKQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       217 ~P~t-------------~~t~~li~~~~l~~m-k~gailIN~~  245 (330)
                      .=..             .-....++++.++.. |++++|.-+.
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            2100             001233456666653 5666666553

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.57  E-value=0.018  Score=57.87  Aligned_cols=91  Identities=20%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------C-CC--CCCCHHHHhhcCCEEEEeccCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T-YP--FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~-~~--~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +|+..+++|++|.|||-|.++..=++.|..+|++|+++++...+..      + ..  ...-..+.+..+++|+.++...
T Consensus         4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (457)
T PRK10637          4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD   83 (457)
T ss_pred             eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence            4555689999999999999999989999999999999987543321      1 00  0011235677888877775433


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      +     +|.+....++...+++|++
T Consensus        84 ~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         84 A-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             H-----HhHHHHHHHHHcCcEEEEC
Confidence            2     4555555566566777764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.03  Score=55.65  Aligned_cols=107  Identities=18%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCC--CCCCHHHHhhcCCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYP--FYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~--~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      .+.+|++.|+|.|.+|.++|+.|...|++|+++++.....          .+..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            3679999999999999999999999999999999864221          0111  112234566789999886543333


Q ss_pred             cccc----------cc-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          223 THHL----------IN-KQVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       223 t~~l----------i~-~~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      ...+          +. .+.+.. .+...+-|--+.|+---.+-|...|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            2211          11 111222 232234444456887777777777765

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.54  E-value=0.072  Score=51.41  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhC----------CCEEE-EECCCCC-------C---------CCC-CC------CCCCHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF----------GCCVS-YNSRNKK-------P---------SVT-YP------FYPDVC  204 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~----------G~~V~-~~~~~~~-------~---------~~~-~~------~~~~l~  204 (330)
                      .+|||+|+|.||+.+++.+...          +++|. ++|++..       .         ..+ ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999998754          56765 4454211       0         001 01      123778


Q ss_pred             HHhh--cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 020160          205 ELAA--NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRGEI  264 (330)
Q Consensus       205 ell~--~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g~i  264 (330)
                      +++.  ..|+|+.++|....+...--.-....++.|.-+|-...+.+ ...++|.++.++...
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            8874  58999999987654322111223455666766665433332 235677777766655

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.52  E-value=0.03  Score=55.96  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEec--cCC-c----c
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICC--ALT-D----Q  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~--P~t-~----~  222 (330)
                      ++.|++|.|+|+|..|.++|+.|+..|++|.++|......     .+......-.+-+..+|+|+..-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            3678999999999999999999999999999999754311     12221111112356899887532  211 1    1


Q ss_pred             c---cc----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          223 T---HH----LINK-QVLLA-L-----GKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       223 t---~~----li~~-~~l~~-m-----k~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .   +.    ++++ +.+.. +     +...+-|--+.|+.--..-|...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            1   01    1322 22222 2     233455666779888777788888753

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.51  E-value=0.18  Score=48.45  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +.|+||++||-+  ++.++++..+..+|++|.+..+..-..              .+  +....++++.++++|+|..-+
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            689999999987  788999999999999998776543211              01  122468899999999998742


Q ss_pred             cCC--c-----c-----ccccccHHHHh-cCCCCcEEEEcC
Q 020160          218 ALT--D-----Q-----THHLINKQVLL-ALGKKGVIINVG  245 (330)
Q Consensus       218 P~t--~-----~-----t~~li~~~~l~-~mk~gailIN~~  245 (330)
                      =..  .     +     ...-++++.++ .+|+++++.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            100  0     0     12345566666 367777766553

>PRK08328 hypothetical protein; Provisional

Probab=95.50  E-value=0.039  Score=50.30  Aligned_cols=37  Identities=35%  Similarity=0.493  Sum_probs=32.2

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35899999999999999999999999998 57777654

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.48  E-value=0.048  Score=51.61  Aligned_cols=29  Identities=24%  Similarity=0.623  Sum_probs=25.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEEC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNS  188 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~  188 (330)
                      +|.|||+|.+|..+|+.|...|. +++.+|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            58999999999999999999998 566655

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.44  E-value=0.096  Score=50.62  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=68.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCC-cccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALT-DQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t-~~t~~li~  228 (330)
                      .+|||||. .+|+..++.++..  ++++. ++|++.+..      .+...+.++++++...|++++++|.+ +...|.  
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~--   80 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS--   80 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence            68999999 6899999888775  46765 577765432      14446789999999999999999853 332332  


Q ss_pred             HHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          229 KQVLLALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       229 ~~~l~~mk~ga-ilIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +-..+.|+.|. +++-=-=. .-+.++|+++.++..+.
T Consensus        81 e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~  117 (343)
T TIGR01761        81 ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR  117 (343)
T ss_pred             HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence            33444556663 34332111 34556688888777665

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.39  E-value=0.029  Score=49.88  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=32.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|.+++|.|+|+|.+|.++++.|...|. +++.+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45899999999999999999999999998 57777654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07411 hypothetical protein; Validated

Probab=95.38  E-value=0.041  Score=54.13  Aligned_cols=83  Identities=22%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-------------CC-----------------C-----
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-------------VT-----------------Y-----  197 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-------------~~-----------------~-----  197 (330)
                      ..|+..+|.|||+|.+|..+|+.|...|. +++.+|...-..             .+                 .     
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            35899999999999999999999999998 566666432110             00                 0     


Q ss_pred             -CC--CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCC
Q 020160          198 -PF--YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK  237 (330)
Q Consensus       198 -~~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~  237 (330)
                       ..  ..+..+++.++|+|+.|+ .+.+++.+++....+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence             00  123456788888777765 4566777777655554333

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.37  E-value=0.014  Score=57.01  Aligned_cols=60  Identities=27%  Similarity=0.388  Sum_probs=42.7

Q ss_pred             EEEEecChHHHHHHHHHHhCC-C-EEEEECCCCCCC-------C--C-------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFG-C-CVSYNSRNKKPS-------V--T-------YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G-~-~V~~~~~~~~~~-------~--~-------~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      |+|+|.|.+|+.+++.|...+ . +|++.+|+.+..       .  .       .....++.++++++|+|+.|+|..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            689999999999999998766 4 899888876531       0  1       111234778999999999999754

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02527 aspartate carbamoyltransferase

Probab=95.37  E-value=0.13  Score=48.94  Aligned_cols=90  Identities=21%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             cCCceEEEEecC---hHHHHHHHHHHhC-CCEEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVGLG---SIGSEVAKRLEAF-GCCVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG~G---~IG~~~A~~l~~~-G~~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +.|.||++||-+   ++.++++..+..+ |++|.+..+..-...          +.  ....++++.+++||+|....-.
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q  228 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ  228 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence            689999999965   6899999998887 999987766432110          11  2246899999999999874311


Q ss_pred             Cc------c------ccccccHHHHhcCCCCcEEEEcC
Q 020160          220 TD------Q------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       220 t~------~------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+      .      -...++.+.++.++++++|.-+.
T Consensus       229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl  266 (306)
T PLN02527        229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL  266 (306)
T ss_pred             hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence            00      0      12345566666667776666553

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.33  E-value=0.024  Score=55.32  Aligned_cols=37  Identities=22%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45899999999999999999999999997 77777654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.33  E-value=0.03  Score=57.25  Aligned_cols=39  Identities=28%  Similarity=0.380  Sum_probs=34.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ..+.++++.|+|.|.+|++++..|...|++|..++|+.+
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            357899999999999999999999999999999988643

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.31  E-value=0.04  Score=55.77  Aligned_cols=61  Identities=23%  Similarity=0.309  Sum_probs=45.0

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCC--CCCHHHHhhcCCEEEEe
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPF--YPDVCELAANSDVLIIC  216 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~--~~~l~ell~~aDvV~l~  216 (330)
                      +.++++.|+|+|..|.++|+.|+..|.+|.++|.......         +...  .....+.+..+|+|+..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s   76 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS   76 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence            5688999999999999999999999999999997543210         1111  11123456789999886

>PLN00106 malate dehydrogenase

Probab=95.30  E-value=0.098  Score=50.15  Aligned_cols=92  Identities=15%  Similarity=0.208  Sum_probs=58.9

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCC---C------CCC-----CCCCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPS---V------TYP-----FYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~---~------~~~-----~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ..+||+|+|. |.+|..+|..|...+.  ++..+|......   .      ...     ...++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4579999999 9999999999985554  788888765211   0      000     123457889999999987543


Q ss_pred             Ccc---ccc-cc--c----H---HHHhcCCCCcEEEEcCCCc
Q 020160          220 TDQ---THH-LI--N----K---QVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       220 t~~---t~~-li--~----~---~~l~~mk~gailIN~~rg~  248 (330)
                      ...   ++. ++  |    .   +.+....|.+++++++---
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            211   221 11  1    1   2233445889999987544

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.29  E-value=0.046  Score=54.32  Aligned_cols=107  Identities=19%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCC--CCHHHHhhc-CCEEEEec--cCC-
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFY--PDVCELAAN-SDVLIICC--ALT-  220 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~ell~~-aDvV~l~~--P~t-  220 (330)
                      +.|+++.|+|.|.+|.++|+.|+..|++|.++|+......         +....  ....+++.. .|+|+..-  |.+ 
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            6799999999999999999999999999999987542211         21111  122344554 89887754  211 


Q ss_pred             cc-------ccccccHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          221 DQ-------THHLINKQ-VLLAL-GKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       221 ~~-------t~~li~~~-~l~~m-k~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      +.       .-.+++.. .+..+ +...+-|--+.|+---..-+...|+..
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            11       01123322 22233 333455555678877777777777653

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.29  E-value=0.39  Score=46.71  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             ccCCceEEEEecC--------hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcC
Q 020160          155 KLGGKRVGIVGLG--------SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANS  210 (330)
Q Consensus       155 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~a  210 (330)
                      .+.|+||+|+|.|        ++.++++..+..||++|.+..+..-..              .+  .....++++.++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        455788888999999998877653210              11  12357899999999


Q ss_pred             CEEEEe
Q 020160          211 DVLIIC  216 (330)
Q Consensus       211 DvV~l~  216 (330)
                      |+|..-
T Consensus       247 Dvvyt~  252 (357)
T TIGR03316       247 DIVYPK  252 (357)
T ss_pred             CEEEEC
Confidence            999875

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.28  E-value=0.1  Score=50.28  Aligned_cols=91  Identities=12%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .+.|.+|++||= .++.++++..+..+|++|.++.+..-...              +  +....++++.++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            478999999996 68899999999999999988776432110              1  223578999999999998832


Q ss_pred             -----cCCc---c------ccccccHHHHhcCCCCcEEEEcC
Q 020160          218 -----ALTD---Q------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 -----P~t~---~------t~~li~~~~l~~mk~gailIN~~  245 (330)
                           ....   +      -...++++.++.+|++++|.-+.
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL  272 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL  272 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence                 1100   0      12456788888888888887764

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.24  E-value=0.036  Score=52.23  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C--------------CCCCCC----------CH
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V--------------TYPFYP----------DV  203 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~--------------~~~~~~----------~l  203 (330)
                      +-...+.++-++|+|.+|-..+...+..|+-|..++-++...     .              ++....          -+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            445778889999999999999999999999998877554320     0              111111          13


Q ss_pred             HHHhhcCCEEEEe--ccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          204 CELAANSDVLIIC--CALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       204 ~ell~~aDvV~l~--~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+..++.|+|+..  .|..+.-+ ++.++..+.||||+++|+.+
T Consensus       239 a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEeh
Confidence            4567899999875  56666544 88999999999999999974

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.23  E-value=0.18  Score=48.57  Aligned_cols=90  Identities=13%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +.|+||++||=+  ++.++.+..+..+|++|.+..+..-..              .+  +....++++.++++|+|..-.
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  232 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV  232 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            679999999975  889999999999999998877642111              11  223578999999999998742


Q ss_pred             cCC--c------c-----ccccccHHHHhcCC-CCcEEEEcC
Q 020160          218 ALT--D------Q-----THHLINKQVLLALG-KKGVIINVG  245 (330)
Q Consensus       218 P~t--~------~-----t~~li~~~~l~~mk-~gailIN~~  245 (330)
                      =..  .      +     -...++++.++.++ |+++|.-+.
T Consensus       233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            100  0      0     12345677777775 477777664

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.23  E-value=0.018  Score=59.82  Aligned_cols=87  Identities=18%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCC---HHH-HhhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPD---VCE-LAANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e-ll~~aDvV~l~~P~t~~t~  224 (330)
                      ..++-|+|+|++|+.+++.|...|.++++.|.+++..     .+...    ..+   +++ -+++||.++++.+..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            4679999999999999999999999999999876531     12111    112   222 2578999999998776665


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                      .+  ....+++.|...+|-.+|
T Consensus       480 ~i--~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KI--VELCQQHFPHLHILARAR  499 (601)
T ss_pred             HH--HHHHHHHCCCCeEEEEeC
Confidence            54  344555666666554433

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.22  E-value=0.042  Score=51.79  Aligned_cols=38  Identities=16%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      ++.|+++.|+|.|..+++++..|...|. +|.+++|+..
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            3678999999999999999999988897 7999999853

>PRK11579 putative oxidoreductase; Provisional

Probab=95.21  E-value=0.046  Score=52.58  Aligned_cols=64  Identities=20%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             ceEEEEecChHHHH-HHHHHHh-CCCEEE-EECCCCCCC----CCCCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEA-FGCCVS-YNSRNKKPS----VTYPFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~~----~~~~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+. .+..++. -++++. ++++++...    .....+.+++++++  ..|+|++++|...+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            48999999999985 5665554 368875 567664321    12334679999996  47999999986543

>PRK05086 malate dehydrogenase; Provisional

Probab=95.20  E-value=0.11  Score=49.62  Aligned_cols=88  Identities=23%  Similarity=0.291  Sum_probs=55.5

Q ss_pred             ceEEEEec-ChHHHHHHHHHH---hCCCEEEEECCCCCCC---C---CCC--C------CCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLE---AFGCCVSYNSRNKKPS---V---TYP--F------YPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~---~~G~~V~~~~~~~~~~---~---~~~--~------~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++++|||. |.||+++|..+.   ..+..+..+++.+...   .   ...  .      ..++.+.++++|+|++++-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998774   3455788888764321   0   101  0      235567889999999986532


Q ss_pred             ccccc-----ccc------HHH---HhcCCCCcEEEEcCCC
Q 020160          221 DQTHH-----LIN------KQV---LLALGKKGVIINVGRG  247 (330)
Q Consensus       221 ~~t~~-----li~------~~~---l~~mk~gailIN~~rg  247 (330)
                       ...+     ++.      .+.   +..-.+.+++++++-.
T Consensus        81 -~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         81 -RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence             2111     111      223   3334577899998653

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.17  E-value=0.76  Score=43.09  Aligned_cols=180  Identities=17%  Similarity=0.128  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 020160          117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF----GC-------CVS  185 (330)
Q Consensus       117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  185 (330)
                      +|=.+++-+|+.+|-.                    |+.|...++.|+|.|.-|-.+|+.+...    |+       +++
T Consensus         4 Ta~V~lAgllnAlk~~--------------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~   63 (279)
T cd05312           4 TAAVALAGLLAALRIT--------------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW   63 (279)
T ss_pred             HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence            4445677777666642                    4568899999999999999999999876    77       677


Q ss_pred             EECCCCC-----CCC---------CCC--CCCCHHHHhh--cCCEEEEeccCCccccccccHHHHhcCC---CCcEEEEc
Q 020160          186 YNSRNKK-----PSV---------TYP--FYPDVCELAA--NSDVLIICCALTDQTHHLINKQVLLALG---KKGVIINV  244 (330)
Q Consensus       186 ~~~~~~~-----~~~---------~~~--~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~mk---~gailIN~  244 (330)
                      .+|+..-     ...         ...  ...+|.|+++  ++|+++=+-    ..-++|+++.++.|.   +.+++.=.
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL  139 (279)
T cd05312          64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL  139 (279)
T ss_pred             EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            7776531     100         001  2358999999  889887632    234789999999998   88999999


Q ss_pred             CCCcccCHHHHHHHHH--cCC-ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCH-----HHHHHHHHHHHHHHHH
Q 020160          245 GRGAIIDEKEMVGCLL--RGE-IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTP-----ESFKDVCELAVANLEA  315 (330)
Q Consensus       245 ~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~-----~~~~~~~~~~~~nl~~  315 (330)
                      |.-.---|-.-.++.+  +|+ |.+.|.-.-..+..-. ...=+..|+++=|=++-..-     .--+.|...+++-|-+
T Consensus       140 SNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~  219 (279)
T cd05312         140 SNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS  219 (279)
T ss_pred             CCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence            9876633333333333  354 6544431111111000 11335668888887764321     1234566666666666


Q ss_pred             HHcCC
Q 020160          316 FFSNK  320 (330)
Q Consensus       316 ~~~g~  320 (330)
                      +..-+
T Consensus       220 ~~~~~  224 (279)
T cd05312         220 LVTDE  224 (279)
T ss_pred             hCCcc
Confidence            55433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.16  E-value=0.007  Score=50.89  Aligned_cols=92  Identities=20%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCC--CEEEEECCCCCCCC---------------CCCCCCCHHHHhhcCCEEEEec--c
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFG--CCVSYNSRNKKPSV---------------TYPFYPDVCELAANSDVLIICC--A  218 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~---------------~~~~~~~l~ell~~aDvV~l~~--P  218 (330)
                      ++|+|||. |.+|+.+|..|...+  -++..+|+......               .........+.+++||+|+++.  |
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            48999999 999999999987544  48988988743211               0111235567889999999987  3


Q ss_pred             CCc-ccc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160          219 LTD-QTH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       219 ~t~-~t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                      ..+ ++| .++  |       .+.+....|.++++.++  ..+|.
T Consensus        81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd~  123 (141)
T PF00056_consen   81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVDV  123 (141)
T ss_dssp             SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHHH
T ss_pred             ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHHH
Confidence            332 112 111  1       11233345778888874  34553

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.15  E-value=0.051  Score=52.73  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999998 67666654

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.15  E-value=0.055  Score=55.89  Aligned_cols=64  Identities=22%  Similarity=0.287  Sum_probs=48.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C--C-CCCCC---HHHHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T--Y-PFYPD---VCELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~--~-~~~~~---l~ell~~aDvV~l~~P  218 (330)
                      ....|+|||||-|..|+.+++.++.+|++|+.++..+....    .  . ..+.+   +.++++.+|+|+....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            47889999999999999999999999999999988764221    0  0 11233   5566788999876543

>PLN02342 ornithine carbamoyltransferase

Probab=95.12  E-value=0.42  Score=46.31  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------C---CCCCCCHHHHhhcCCEEEEec---c
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------T---YPFYPDVCELAANSDVLIICC---A  218 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~---~~~~~~l~ell~~aDvV~l~~---P  218 (330)
                      +.|+||++||= .++.++++..+..+|++|.+..+..-...          +   +....++++.++++|+|..-.   -
T Consensus       192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~  271 (348)
T PLN02342        192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM  271 (348)
T ss_pred             cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence            78999999995 56888888899999999987766432110          1   223578899999999998752   0


Q ss_pred             CC-cc--------ccccccHHHHhcCCCCcEEEEcC
Q 020160          219 LT-DQ--------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       219 ~t-~~--------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .. +.        ....++++.++.+|++++|.-+.
T Consensus       272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence            11 10        12456777777777777776663

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.09  E-value=0.049  Score=52.50  Aligned_cols=56  Identities=27%  Similarity=0.377  Sum_probs=42.6

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CC---CCCCC---HHHHhhcCCEEEE
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TY---PFYPD---VCELAANSDVLII  215 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~---~~~~~---l~ell~~aDvV~l  215 (330)
                      ||||||-|..|+.+++.++.+|++|++++.++....    ..   ..+.+   +.++++.||+|+.
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            699999999999999999999999999988754321    00   11223   6678888998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.05  E-value=0.022  Score=58.47  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=54.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCC---HHH-HhhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPD---VCE-LAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e-ll~~aDvV~l~~P~t~~t~~  225 (330)
                      .++-|+|+|++|+.+|+.|+..|.+|++.|.+++..     .+...    ..+   +++ -++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            578899999999999999999999999998876531     11110    112   222 25688989888887666554


Q ss_pred             cccHHHHhcCCCCcEEE
Q 020160          226 LINKQVLLALGKKGVII  242 (330)
Q Consensus       226 li~~~~l~~mk~gailI  242 (330)
                      ++-  ....+.+...+|
T Consensus       498 iv~--~~~~~~~~~~ii  512 (558)
T PRK10669        498 IVA--SAREKRPDIEII  512 (558)
T ss_pred             HHH--HHHHHCCCCeEE
Confidence            432  223344555555

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.03  E-value=0.024  Score=48.70  Aligned_cols=62  Identities=19%  Similarity=0.146  Sum_probs=47.4

Q ss_pred             EEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC---C-------CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          161 VGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV---T-------YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       161 vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---~-------~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      |.|+|. |.+|+.+++.|...|++|++..|++.+..   +       .....++.+.++.+|.|+.+++.+..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence            578995 99999999999999999999988876421   1       11123456778899999999975444

...

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.01  E-value=0.59  Score=43.23  Aligned_cols=176  Identities=16%  Similarity=0.110  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC-----------EEE
Q 020160          117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-----------CVS  185 (330)
Q Consensus       117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-----------~V~  185 (330)
                      +|=.+++-+|+.+|-.                    |+++...++.|+|.|.-|-.+|+.+...+.           +++
T Consensus         4 TaaV~lAgllnAlk~~--------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~   63 (254)
T cd00762           4 TASVAVAGLLAALKVT--------------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW   63 (254)
T ss_pred             hHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence            3445677777666631                    456888999999999999999999987665           577


Q ss_pred             EECCCCC-----CCC-----C---C----CCCCCHHHHhh--cCCEEEEeccCCccccccccHHHHhcCC---CCcEEEE
Q 020160          186 YNSRNKK-----PSV-----T---Y----PFYPDVCELAA--NSDVLIICCALTDQTHHLINKQVLLALG---KKGVIIN  243 (330)
Q Consensus       186 ~~~~~~~-----~~~-----~---~----~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~~mk---~gailIN  243 (330)
                      .+|+..-     ...     .   +    ....+|.|+++  +.|+++=..    ...++|.++.++.|.   +.+++.=
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            7776421     000     0   1    12358999999  999887532    235789999999998   8899999


Q ss_pred             cCCCcccCH---HHHHHHHHcCCceEEEEecCCCCCCCCc---ccccCCceEEcCCCCCCCHH-----HHHHHHHHHHHH
Q 020160          244 VGRGAIIDE---KEMVGCLLRGEIGGAGLDVFENEPDVPE---QLFALDNVVLSPHSAVFTPE-----SFKDVCELAVAN  312 (330)
Q Consensus       244 ~~rg~~vd~---~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~L~~~~nvilTPHia~~t~~-----~~~~~~~~~~~n  312 (330)
                      .|....--|   ++.+++=+...|.+.|.-.+..+-  +.   ..-+..|+.+=|=++-..-.     --+.|...+++-
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~a  217 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEA  217 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHH
Confidence            988776333   333333323345444432222211  11   13366789998977643221     124555555665


Q ss_pred             HHHHHc
Q 020160          313 LEAFFS  318 (330)
Q Consensus       313 l~~~~~  318 (330)
                      |-++..
T Consensus       218 LA~~v~  223 (254)
T cd00762         218 IASSVT  223 (254)
T ss_pred             HHhhCC
Confidence            655543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.01  E-value=0.051  Score=54.94  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC--CCCHHHHhhcCCEEEEeccCCcccc----
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF--YPDVCELAANSDVLIICCALTDQTH----  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~ell~~aDvV~l~~P~t~~t~----  224 (330)
                      ..|+++.|+|+|.+|.+.++.|+..|++|+++|..+...     .+...  .....+.+..+|+|+.+-...+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            468999999999999999999999999999999653211     12211  1123456778998887642222211    


Q ss_pred             ------ccccHHHHh--cC------CC-CcEEEEcCCCcccCHHHHHHHHHc
Q 020160          225 ------HLINKQVLL--AL------GK-KGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       225 ------~li~~~~l~--~m------k~-gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                            .++++-.+.  .+      ++ ..+-|--+-|+.--..-+...|+.
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence                  122222221  11      12 234444456877777767777765

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.96  E-value=0.19  Score=48.23  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------CCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TY--------PFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~ell~~aDvV  213 (330)
                      ++|+|||. |.+|..+|..+...|.       ++..+|.....  ..       ..        ....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999999876555       68888874332  11       00        0123456889999999


Q ss_pred             EEeccCC--c-cccc-cc--c----H---HHHhcCC-CCcEEEEcCCCcccCHHHHHH
Q 020160          214 IICCALT--D-QTHH-LI--N----K---QVLLALG-KKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       214 ~l~~P~t--~-~t~~-li--~----~---~~l~~mk-~gailIN~~rg~~vd~~aL~~  257 (330)
                      +++.-..  + .||. ++  |    +   ..+..-. |.+++|+++  ..+|.-+-+-
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~  138 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA  138 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence            9986432  1 1221 11  1    1   1222334 588999986  6666555443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.94  E-value=0.043  Score=60.04  Aligned_cols=64  Identities=22%  Similarity=0.193  Sum_probs=45.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhC-CCE-------------EEEECCCCCCCC-------CC---CC-CCCHHHH---hh
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAF-GCC-------------VSYNSRNKKPSV-------TY---PF-YPDVCEL---AA  208 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~-G~~-------------V~~~~~~~~~~~-------~~---~~-~~~l~el---l~  208 (330)
                      +.++|+|||.|.||+..|+.|... +.+             |.+.|++.....       +.   .. +.+.+++   ++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            477999999999999999999753 233             778887653311       11   11 3344444   46


Q ss_pred             cCCEEEEeccCC
Q 020160          209 NSDVLIICCALT  220 (330)
Q Consensus       209 ~aDvV~l~~P~t  220 (330)
                      ++|+|++++|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999974

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.89  E-value=0.084  Score=49.99  Aligned_cols=84  Identities=24%  Similarity=0.360  Sum_probs=55.3

Q ss_pred             EEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC----------CC----CC--CCCHHHHhhcCCEEEEeccCCcc
Q 020160          161 VGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV----------TY----PF--YPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~----------~~----~~--~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      |+|||.|.+|..+|-.+...|  .++..+|.......          ..    ..  ..+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998888  47999998764311          00    00  123 4689999999998753221


Q ss_pred             ---ccc--------ccc--HHHHhcCCCCcEEEEcC
Q 020160          223 ---THH--------LIN--KQVLLALGKKGVIINVG  245 (330)
Q Consensus       223 ---t~~--------li~--~~~l~~mk~gailIN~~  245 (330)
                         +|.        ++.  ...+....|.+++|+++
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence               111        110  12233345889999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.86  E-value=0.068  Score=52.57  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|.+.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            35889999999999999999999998887 67777643

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=94.83  E-value=0.9  Score=48.33  Aligned_cols=154  Identities=14%  Similarity=0.160  Sum_probs=102.9

Q ss_pred             CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160          103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC  182 (330)
Q Consensus       103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  182 (330)
                      +|+|.|. +.+.  +|=.+++-+++.+|-.                    |+.+...++.|.|.|.-|-.+|+.+...|.
T Consensus       153 ~ip~f~D-D~~G--Ta~v~lA~l~na~~~~--------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        153 DIPVFHD-DQHG--TAIISAAALLNALELV--------------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             CCCeecc-ccch--HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            5788876 3333  4445677777666531                    456889999999999999999999999998


Q ss_pred             ---EEEEECCCCC----C-C--C-------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          183 ---CVSYNSRNKK----P-S--V-------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       183 ---~V~~~~~~~~----~-~--~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                         +++.+|+..-    . .  .       ......+|.|+++.+|+++=. .    +.+.++++.++.|.+.+++.=.|
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals  284 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA  284 (752)
T ss_pred             CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence               6887776531    1 0  0       012235899999999987653 2    25799999999999999999998


Q ss_pred             CCcccCHHHHHHHHHc--CCceEEEEecCCCCCCCCcccccCCceEEcCCCC
Q 020160          246 RGAIIDEKEMVGCLLR--GEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA  295 (330)
Q Consensus       246 rg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia  295 (330)
                      ....  |-.-.++.+.  |.|.+.|-   ...|      =+..|+++=|=++
T Consensus       285 NP~~--E~~p~~a~~~~~~~i~atGr---s~~p------nQ~NN~~~FPgi~  325 (752)
T PRK07232        285 NPDP--EITPEEAKAVRPDAIIATGR---SDYP------NQVNNVLCFPYIF  325 (752)
T ss_pred             CCCc--cCCHHHHHHhcCCEEEEECC---cCCC------Ccccceeecchhh
Confidence            8774  2222233333  34554441   1122      1345777777654

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.81  E-value=0.021  Score=50.08  Aligned_cols=63  Identities=14%  Similarity=0.165  Sum_probs=45.3

Q ss_pred             ceEEEEecChHHHHHHHH--HHhCCCEEE-EECCCCCCC----CCC--CCCCCHHHHhh--cCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKR--LEAFGCCVS-YNSRNKKPS----VTY--PFYPDVCELAA--NSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~~----~~~--~~~~~l~ell~--~aDvV~l~~P~t~  221 (330)
                      -++.|||.|++|++++..  .+..||++. ++|..++..    .+.  ...++++..++  +.|+.++|+|...
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~  158 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH  158 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence            369999999999999985  457899875 788766531    111  22456777777  6789999999653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.81  E-value=0.15  Score=50.84  Aligned_cols=94  Identities=18%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             ccccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCC--CCCHHH-HhhcCCEEEEeccC
Q 020160          153 GSKLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF--YPDVCE-LAANSDVLIICCAL  219 (330)
Q Consensus       153 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~--~~~l~e-ll~~aDvV~l~~P~  219 (330)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+..........  ...+++ .+..||.|++++..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h  388 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH  388 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence            45689999999999          567889999999999999999997432110000  111222 46789999998865


Q ss_pred             CccccccccHHHH-hcCCCCcEEEEcCCCcc
Q 020160          220 TDQTHHLINKQVL-LALGKKGVIINVGRGAI  249 (330)
Q Consensus       220 t~~t~~li~~~~l-~~mk~gailIN~~rg~~  249 (330)
                      . +.+. ++.+.+ ..|+...++|+ +|+-+
T Consensus       389 ~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        389 Q-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             H-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            4 3443 343444 34664568888 56555

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=94.80  E-value=0.23  Score=46.87  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=69.1

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEE-EEECCC--CCCCCCCCCCCCHHHHhhc--CCEEEEeccCCccccccccHHH
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCV-SYNSRN--KKPSVTYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V-~~~~~~--~~~~~~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ..+|.|.|. |.+|+.+.+.|..+|+++ ..+++.  .....+...+.++.|+-..  -|+.++++|.. .+...+ ++.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence            567899996 889999999999999863 345554  3333466778899999987  89999999954 333332 223


Q ss_pred             HhcCCC-CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          232 LLALGK-KGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~-gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .+ ..- .++++.-+- ..-|++.|.+..+++.++
T Consensus        86 ~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~gir  118 (291)
T PRK05678         86 ID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTR  118 (291)
T ss_pred             HH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCE
Confidence            32 332 334444333 343444888888887654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.79  E-value=0.086  Score=51.44  Aligned_cols=84  Identities=24%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             cCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      |.|||+||+|+-          .-...++++|+..|.+|.+||+......     +..+..++++++++||.++++.. .
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence            899999999984          3467899999999999999998654322     23556799999999999999764 3


Q ss_pred             ccccccccHHHHhcCCCCcEEEE
Q 020160          221 DQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN  243 (330)
                      ++.+.+ +-+.+ .|| +.++++
T Consensus       387 ~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         387 DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhcc-Chhhh-hcc-CCEEEe
Confidence            455543 33333 565 456555

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.061  Score=54.08  Aligned_cols=107  Identities=16%  Similarity=0.119  Sum_probs=65.4

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCC--CCCHHHHhhcCCEEEEec--cCC-cc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPF--YPDVCELAANSDVLIICC--ALT-DQ  222 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~--~~~l~ell~~aDvV~l~~--P~t-~~  222 (330)
                      +.|++++|+|+|.-|.+.|+.|+..|++|+++|.......        +...  .....+.+.++|+|+..-  |.+ |.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            4689999999999999999999999999999986432111        1000  111235567899887753  221 11


Q ss_pred             c-------cccccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          223 T-------HHLINKQVL--LA-LG-----KKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       223 t-------~~li~~~~l--~~-mk-----~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .       ..++++-.+  .. ++     ...+-|--+.|+---..-+...|+..
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            1       113443332  33 32     13455555568877777777777643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.75  E-value=0.3  Score=43.87  Aligned_cols=87  Identities=26%  Similarity=0.299  Sum_probs=54.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC----CC-CCCHHH-H----hhcCCEEEEeccCCc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY----PF-YPDVCE-L----AANSDVLIICCALTD  221 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~----~~-~~~l~e-l----l~~aDvV~l~~P~t~  221 (330)
                      .|.++.|.|.|.+|+.+++.++..|.+|.+.+++.....     +.    .. ..+..+ +    -...|+++.+++...
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  213 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE  213 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            578999999999999999999999999998877643210     10    00 011111 1    134677776654311


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          222 QTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                           .-...+..|++++.+++++...
T Consensus       214 -----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         214 -----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             -----HHHHHHHhcccCCEEEEEccCC
Confidence                 1134566677777777776544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.14  Score=46.12  Aligned_cols=36  Identities=39%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.|+++.|.|. |.||+.+++.|...|++|++..|+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            67899999996 9999999999999999998877754

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.73  E-value=0.043  Score=46.50  Aligned_cols=85  Identities=22%  Similarity=0.176  Sum_probs=55.3

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC---CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY---PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ..|++|++||+=   +.++++++..+.++.++++++......   ......++++++||+|++.-- |=-+.-+  .+.|
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs-TlvN~Ti--~~iL   82 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS-TLVNGTI--DDIL   82 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH-HCCTTTH--HHHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee-eeecCCH--HHHH
Confidence            468999999961   237888888899999999988542211   123456789999999988532 1111112  5678


Q ss_pred             hcCCCCcEEEEcCC
Q 020160          233 LALGKKGVIINVGR  246 (330)
Q Consensus       233 ~~mk~gailIN~~r  246 (330)
                      +..+++..++=+|-
T Consensus        83 ~~~~~~~~vil~Gp   96 (147)
T PF04016_consen   83 ELARNAREVILYGP   96 (147)
T ss_dssp             HHTTTSSEEEEESC
T ss_pred             HhCccCCeEEEEec
Confidence            88887777776654

; PDB: 3L5O_B 3NPG_A.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.70  E-value=0.094  Score=51.97  Aligned_cols=68  Identities=16%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             ccccCCceEEEEec----------ChHHHHHHHHHHhCC-CEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEec
Q 020160          153 GSKLGGKRVGIVGL----------GSIGSEVAKRLEAFG-CCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       153 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +.++.|++|+|+|+          ..-...+++.|+..| .+|.+||+......    ......++++.++.||.|++++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45678999999998          557789999999996 99999999744321    1112468899999999999998


Q ss_pred             cCC
Q 020160          218 ALT  220 (330)
Q Consensus       218 P~t  220 (330)
                      +..
T Consensus       395 ~~~  397 (415)
T PRK11064        395 DHS  397 (415)
T ss_pred             CCH
Confidence            754

>PRK04148 hypothetical protein; Provisional

Probab=94.69  E-value=0.083  Score=44.08  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-----CCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-----FYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      +++++.+||+| -|..+|+.|...|++|++.|.++....     +..     ....-.++.+.+|+|-..-|..+--+.+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~   94 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI   94 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence            56899999999 999999999999999999998876311     110     1122236778888887776654433333

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.66  E-value=0.031  Score=58.26  Aligned_cols=84  Identities=20%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCCH---HH-HhhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPDV---CE-LAANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~l---~e-ll~~aDvV~l~~P~t~~t~  224 (330)
                      ..++-|+|+|++|+.+|+.|.+.|.++++.|.+++..     .+...    ..+.   ++ -++++|.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            4689999999999999999999999999998876531     12211    1122   21 2568999999997766655


Q ss_pred             ccccHHHHhcCCCCcEEEE
Q 020160          225 HLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN  243 (330)
                      .+  ....+.+.|...++-
T Consensus       480 ~i--~~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QL--VELVKEHFPHLQIIA  496 (621)
T ss_pred             HH--HHHHHHhCCCCeEEE
Confidence            44  344555556655443

>PRK07877 hypothetical protein; Provisional

Probab=94.64  E-value=0.1  Score=55.15  Aligned_cols=93  Identities=20%  Similarity=0.302  Sum_probs=61.8

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCC------------CC-----------------CC------
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKP------------SV-----------------TY------  197 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------------~~-----------------~~------  197 (330)
                      .|++++|+|+|+| +|+.+|..|...|.  +++.+|...-.            ..                 ..      
T Consensus       104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5899999999999 99999999998884  66665532100            00                 00      


Q ss_pred             --CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          198 --PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       198 --~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                        ....+++++++++|+|+-|+- +-+++.+++....++=+  .++.-.+-++.+|
T Consensus       183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~  235 (722)
T PRK07877        183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD  235 (722)
T ss_pred             ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence              001357788999999988774 56888888876665432  3444444334443

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.64  E-value=0.69  Score=44.57  Aligned_cols=91  Identities=7%  Similarity=0.027  Sum_probs=63.3

Q ss_pred             ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--------------CC--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VT--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|.+|++||=+  ++.++++..+..+|++|.+..+..-..              .+  +....++++.++++|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  789999999999999998877643110              01  12246899999999999874


Q ss_pred             c------cCC--cc-----ccccccHHHHhcC-CCCcEEEEcC
Q 020160          217 C------ALT--DQ-----THHLINKQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       217 ~------P~t--~~-----t~~li~~~~l~~m-k~gailIN~~  245 (330)
                      .      ...  ++     -..-++.+.++.. |++++|.-+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            3      000  00     1234567777775 6788887764

>PRK12862 malic enzyme; Reviewed

Probab=94.63  E-value=1  Score=48.15  Aligned_cols=155  Identities=12%  Similarity=0.123  Sum_probs=103.9

Q ss_pred             CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160          103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC  182 (330)
Q Consensus       103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  182 (330)
                      +|+|.|. +.+.  +|=.+++-+++.+|-.                    |+.+...+|.|.|.|.-|-.+|+.+...|.
T Consensus       161 ~ip~f~D-D~~G--Ta~v~la~l~~a~~~~--------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  217 (763)
T PRK12862        161 KIPVFHD-DQHG--TAIIVAAALLNGLKLV--------------------GKDIEDVKLVASGAGAAALACLDLLVSLGV  217 (763)
T ss_pred             CCceEec-Cccc--HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEEChhHHHHHHHHHHHHcCC
Confidence            5888887 3333  4555677777666632                    456889999999999999999999999998


Q ss_pred             ---EEEEECCCCC-----CC--C-------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          183 ---CVSYNSRNKK-----PS--V-------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       183 ---~V~~~~~~~~-----~~--~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                         +++.+|+..-     ..  .       ......+|.|+++.+|+++=.-     +.+.++++.++.|.+.+++.=.|
T Consensus       218 ~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals  292 (763)
T PRK12862        218 KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA  292 (763)
T ss_pred             CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence               6888875421     10  0       0012358999999999887532     25789999999999999999998


Q ss_pred             CCcccCHHHHHHHHHc--CCceEEEEecCCCCCCCCcccccCCceEEcCCCCC
Q 020160          246 RGAIIDEKEMVGCLLR--GEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAV  296 (330)
Q Consensus       246 rg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~  296 (330)
                      ....  |-.-.++.+-  |.|.+.|-.   ..|      =+..|+++=|=++-
T Consensus       293 NP~~--E~~p~~a~~~~~~~i~atGrs---~~p------~Q~NN~~~FPgi~~  334 (763)
T PRK12862        293 NPTP--EILPEEARAVRPDAIIATGRS---DYP------NQVNNVLCFPYIFR  334 (763)
T ss_pred             CCcc--cCCHHHHHHhcCCEEEEECCc---CCC------Ccccceeeccchhh
Confidence            8764  2222223333  345544421   112      23457777776653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.61  E-value=0.097  Score=45.54  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      +|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 487777643

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd00704 MDH Malate dehydrogenase

Probab=94.54  E-value=0.34  Score=46.45  Aligned_cols=96  Identities=20%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             eEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCC--CCCCC-------C--------CCCCCHHHHhhcCCEEE
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNK--KPSVT-------Y--------PFYPDVCELAANSDVLI  214 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~--~~~~~-------~--------~~~~~l~ell~~aDvV~  214 (330)
                      +|+|+|. |.+|+.+|..|...|.       ++..+|+..  ....+       .        ....+..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999998876443       488888865  32110       0        00145678999999999


Q ss_pred             EeccC--Cc-cccc-cc--c----H---HHHhcC-CCCcEEEEcCCCcccCHHHHHH
Q 020160          215 ICCAL--TD-QTHH-LI--N----K---QVLLAL-GKKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       215 l~~P~--t~-~t~~-li--~----~---~~l~~m-k~gailIN~~rg~~vd~~aL~~  257 (330)
                      ++.-.  .+ +||. ++  |    +   ..+... +|.+++|.++  ..+|.-+.+-
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~  136 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIA  136 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHH
Confidence            87532  22 1221 11  1    1   123334 5888888885  6666555443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.52  E-value=0.22  Score=43.89  Aligned_cols=62  Identities=21%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC---CC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---TY-------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---~~-------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+||| -|.+|+.+++-++..|++|++.-|++.+..   +.       ....++.+.+..-|+|+.+.-..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            5899999 599999999999999999999888876532   11       11234567889999999886544

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.49  E-value=0.067  Score=53.56  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             cCCceEEEEecChHHHH-HHHHHHhCCCEEEEECCCCCCC------CCCCCC-CCHHHHhhcCCEEEEeccCCcc---cc
Q 020160          156 LGGKRVGIVGLGSIGSE-VAKRLEAFGCCVSYNSRNKKPS------VTYPFY-PDVCELAANSDVLIICCALTDQ---TH  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~-~A~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~ell~~aDvV~l~~P~t~~---t~  224 (330)
                      .+++++.|+|+|..|.+ +|+.|+..|++|.++|......      .+.... ..-.+.+..+|+|+..--..+.   .+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56889999999999999 7999999999999999765321      122111 1123455689988775322221   11


Q ss_pred             -------ccccHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          225 -------HLINKQ-VLLA-LGK-KGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       225 -------~li~~~-~l~~-mk~-gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                             .++++- .+.. +++ ..+-|--+.|+---..-+...|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   234333 3333 332 34555556688777777777776543

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.45  E-value=0.046  Score=51.38  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      +.|+++.|+|.|..|++++-.|...|+ +|.+++|+..
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~  162 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence            458999999999999999999999998 6889998764

>PLN02602 lactate dehydrogenase

Probab=94.39  E-value=0.089  Score=50.99  Aligned_cols=86  Identities=17%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------C-CCCC--CCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------T-YPFY--PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~-~~~~--~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|...+...             + ....  .+. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            799999999999999999886665  6888888664321             0 0111  233 4589999999985332


Q ss_pred             --c-ccc-cccc---------HHHHhcCCCCcEEEEcC
Q 020160          221 --D-QTH-HLIN---------KQVLLALGKKGVIINVG  245 (330)
Q Consensus       221 --~-~t~-~li~---------~~~l~~mk~gailIN~~  245 (330)
                        + .+| .++.         .+.+....|.+++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence              1 233 1111         12334456788999987

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.36  E-value=0.15  Score=50.79  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=60.7

Q ss_pred             ceEEEEecChHHHHHHHHHHh--------C--CCEEE-EECCCCCCCC-----CCCCCCCHHHHhhc--CCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--------F--GCCVS-YNSRNKKPSV-----TYPFYPDVCELAAN--SDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--------~--G~~V~-~~~~~~~~~~-----~~~~~~~l~ell~~--aDvV~l~~P~t  220 (330)
                      .+|||+|+|.||+.+++.+..        .  +.+|. +++++.....     +.....++++++..  .|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            489999999999999988743        2  35554 4566543321     12345688999864  69999887643


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGEI  264 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~i  264 (330)
                      ....    .-....++.|--+|-..-+-+. .-++|.++.++...
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence            2111    1223456666555533222222 23567777766654

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.36  E-value=0.072  Score=53.43  Aligned_cols=104  Identities=16%  Similarity=0.061  Sum_probs=62.9

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCC-CCHHHHhhcCCEEEEeccCCcccc----
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFY-PDVCELAANSDVLIICCALTDQTH----  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~-~~l~ell~~aDvV~l~~P~t~~t~----  224 (330)
                      -.|++++|+|+|.-|.++|+.|+. |.+|+++|.......      ..... ....+.+.++|+|+..- .-+.+.    
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SP-gI~~~~p~~~   81 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSP-GIPLTHEIVK   81 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECC-CCCCCCHHHH
Confidence            358899999999999999999995 999999985432211      00111 11234567899887752 222111    


Q ss_pred             -------ccccHHHH--hcCCCC-cEEEEcCCCcccCHHHHHHHHHc
Q 020160          225 -------HLINKQVL--LALGKK-GVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       225 -------~li~~~~l--~~mk~g-ailIN~~rg~~vd~~aL~~aL~~  261 (330)
                             .++++-.+  ..++.. .+=|--+.|+---..-+...|+.
T Consensus        82 ~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         82 IAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             HHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence                   13332222  334332 34444456887777777777775

>PRK06398 aldose dehydrogenase; Validated

Probab=94.32  E-value=0.23  Score=45.38  Aligned_cols=39  Identities=26%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      +++||++.|.| -|.||+++|+.|...|++|+..+++...
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            47899999999 4799999999999999999988886543

>PRK12861 malic enzyme; Reviewed

Probab=94.30  E-value=0.55  Score=49.93  Aligned_cols=119  Identities=13%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160          103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC  182 (330)
Q Consensus       103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  182 (330)
                      .|++.|. +.+.  +|=.+++-+|+.+|-.                    |+++...+|.|.|.|.-|..+|+.+...|.
T Consensus       157 ~ipvf~D-D~qG--Ta~v~lA~llnal~~~--------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~  213 (764)
T PRK12861        157 KIPVFHD-DQHG--TAITVSAAFINGLKVV--------------------GKSIKEVKVVTSGAGAAALACLDLLVDLGL  213 (764)
T ss_pred             CCCeecc-ccch--HHHHHHHHHHHHHHHh--------------------CCChhHcEEEEECHhHHHHHHHHHHHHcCC
Confidence            6888887 3333  4555677777666632                    456888999999999999999999999998


Q ss_pred             ---EEEEECCCC-----CCC--C-------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          183 ---CVSYNSRNK-----KPS--V-------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       183 ---~V~~~~~~~-----~~~--~-------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                         +++.+|+..     +..  .       ......+|.|+++.+|+++= +.    +.+.++++.++.|.+.+++.=.|
T Consensus       214 ~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs  288 (764)
T PRK12861        214 PVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA  288 (764)
T ss_pred             ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence               688887543     111  0       01123589999999997764 32    25799999999999999999998


Q ss_pred             CCcc
Q 020160          246 RGAI  249 (330)
Q Consensus       246 rg~~  249 (330)
                      ....
T Consensus       289 NPtp  292 (764)
T PRK12861        289 NPTP  292 (764)
T ss_pred             CCCc
Confidence            8664

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.29  E-value=0.072  Score=41.56  Aligned_cols=64  Identities=22%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             CceEEEEecChHHHHHHHHH-HhCCCEE-EEECCCCCCC----CCCCCCCCHHHHhhc--CCEEEEeccCCc
Q 020160          158 GKRVGIVGLGSIGSEVAKRL-EAFGCCV-SYNSRNKKPS----VTYPFYPDVCELAAN--SDVLIICCALTD  221 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l-~~~G~~V-~~~~~~~~~~----~~~~~~~~l~ell~~--aDvV~l~~P~t~  221 (330)
                      ..++.|+|+|+.|++++... ...|+.+ .++|.++...    .+...+.+++++.+.  .|+-++++|...
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~   74 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEA   74 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHH
Confidence            45899999999999998544 3556654 4566555432    133445578887777  999999998643

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.28  E-value=0.26  Score=46.98  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=47.4

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCCC-EEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEE
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l  215 (330)
                      +.|.+|++||=   +++..+++..+..+|+ +|.+..+..-...     .+....++++.++.+|+|..
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            67999999997   6999999999999999 8987766432111     12234789999999999976

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.28  E-value=0.072  Score=52.86  Aligned_cols=87  Identities=30%  Similarity=0.256  Sum_probs=57.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCCC----CCCC---HHH-HhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYP----FYPD---VCE-LAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~----~~~~---l~e-ll~~aDvV~l~~P~t  220 (330)
                      +..+++.|+|+|.+|+.+++.|...|.+|++.+++++..       .+..    -..+   +.+ -+.++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            456899999999999999999999999999998876421       0111    0112   222 357899998887755


Q ss_pred             ccccccccHHHHhcCCCCcEEEEc
Q 020160          221 DQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      ..  +++-....+.+.+..+++-+
T Consensus       309 ~~--n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EA--NILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HH--HHHHHHHHHHhCCCeEEEEE
Confidence            33  23333444555555555544

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.27  E-value=0.35  Score=45.99  Aligned_cols=107  Identities=21%  Similarity=0.278  Sum_probs=63.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCC--CCCC-------------CCC--C--CCCHHHHhhcCCEEEEe
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNK--KPSV-------------TYP--F--YPDVCELAANSDVLIIC  216 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~--~~~~-------------~~~--~--~~~l~ell~~aDvV~l~  216 (330)
                      ++|+|+|. |.+|..+|..+...|.  +|..+|+..  +...             +..  .  ..+ .+.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            58999998 9999999999998776  488888844  2110             000  0  123 3459999999999


Q ss_pred             ccCCcc---cc-cc-------cc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH----HHcCCceEEE
Q 020160          217 CALTDQ---TH-HL-------IN--KQVLLALGKKGVIINVGRGAIIDEKEMVGC----LLRGEIGGAG  268 (330)
Q Consensus       217 ~P~t~~---t~-~l-------i~--~~~l~~mk~gailIN~~rg~~vd~~aL~~a----L~~g~i~ga~  268 (330)
                      ......   +| .+       +.  ...+....+.+++|+++  +.+|.-..+-.    +..+++.|.+
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g  146 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG  146 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence            753221   21 11       10  11233445677777776  55554443322    3344555553

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.26  E-value=0.4  Score=47.18  Aligned_cols=179  Identities=18%  Similarity=0.151  Sum_probs=110.8

Q ss_pred             cCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCC
Q 020160          102 RGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG  181 (330)
Q Consensus       102 ~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G  181 (330)
                      ..|+|.|.--   .-+|=.+++-+++.+|-                    .|+.|+..+|.+.|.|.-|-.+++.+++.|
T Consensus       166 ~~IPvFhDDq---qGTaiv~lA~llnalk~--------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         166 MNIPVFHDDQ---QGTAIVTLAALLNALKL--------------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             CCCCcccccc---cHHHHHHHHHHHHHHHH--------------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            3577777633   23455566666665554                    266789999999999999999999999999


Q ss_pred             C---EEEEECCCCCCCC--------CCCC---------CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEE
Q 020160          182 C---CVSYNSRNKKPSV--------TYPF---------YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI  241 (330)
Q Consensus       182 ~---~V~~~~~~~~~~~--------~~~~---------~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gail  241 (330)
                      +   +|+.+|+..--..        .+.+         ..+ ++.+..+|+++-+-     ..+.+.++.++.|.+.+++
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiI  296 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPII  296 (432)
T ss_pred             CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEE
Confidence            8   5888887532110        0000         011 44778899876542     2288999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcC-CceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHH-----HHHHHHHHHHHHHH
Q 020160          242 INVGRGAIIDEKEMVGCLLRG-EIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES-----FKDVCELAVANLEA  315 (330)
Q Consensus       242 IN~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~-----~~~~~~~~~~nl~~  315 (330)
                      .=.|-...--.-+.+..-..| .|-+-|-      |..  |- +..|+++=|-++-..-++     -+.|.-.+++-|-+
T Consensus       297 falaNP~pEi~Pe~a~~~~~~aaivaTGr------sd~--Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~  367 (432)
T COG0281         297 FALANPTPEITPEDAKEWGDGAAIVATGR------SDY--PN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD  367 (432)
T ss_pred             eecCCCCccCCHHHHhhcCCCCEEEEeCC------CCC--cc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence            888876521111111111111 3432222      211  11 678999999987532222     34566666666666


Q ss_pred             HHc
Q 020160          316 FFS  318 (330)
Q Consensus       316 ~~~  318 (330)
                      +..
T Consensus       368 ~~~  370 (432)
T COG0281         368 LAR  370 (432)
T ss_pred             hcc
Confidence            654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.21  E-value=0.12  Score=51.54  Aligned_cols=107  Identities=18%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---------CCCCCC--CCHHHHhhcCCEEEEeccCCcccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------VTYPFY--PDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|......         .+....  ...++.+..+|+|+..--..+...
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            568999999999999999999999999999998755431         011110  112334578999887633222211


Q ss_pred             c----------ccc-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          225 H----------LIN-KQVLLA-LG---KKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       225 ~----------li~-~~~l~~-mk---~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .          +++ .+.+.. ++   ...+-|--+.|+.--..-+...|+..
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            1          222 223323 32   23445555568877777777777653

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.21  E-value=0.29  Score=46.97  Aligned_cols=104  Identities=13%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             ceEEEEecChHHHHHHHHHHh--------CCCEEEE-ECCCCCC--CCC--------------C-CC-CC--CHHHHh-h
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--------FGCCVSY-NSRNKKP--SVT--------------Y-PF-YP--DVCELA-A  208 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--------~G~~V~~-~~~~~~~--~~~--------------~-~~-~~--~l~ell-~  208 (330)
                      ++|+|+|||.+|+.+++.+..        ++.+|.+ .|++...  ..+              . .+ ..  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            379999999999999999875        5667654 3443210  000              0 01 12  455554 4


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGE  263 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~  263 (330)
                      .+|+|+=++|...+-..-. .-..+.++.|.-+|-..-|.+. .-+.|.+..+++.
T Consensus        81 ~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             CCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            5899998887532111111 2345567788888877777665 3555666666554

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.19  E-value=0.07  Score=50.69  Aligned_cols=66  Identities=27%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             ceEEEEecChHHH-HHHHHHHhCC--CEE-EEECCCCCCC------CCC-CCCCCHHHHhhc--CCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGS-EVAKRLEAFG--CCV-SYNSRNKKPS------VTY-PFYPDVCELAAN--SDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~-~~A~~l~~~G--~~V-~~~~~~~~~~------~~~-~~~~~l~ell~~--aDvV~l~~P~t~~t~  224 (330)
                      .++||||+|.+++ ..+..++..+  +.+ ..+|+++...      .+. ..+.+++++++.  -|+|++++|...+..
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e   82 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence            5899999997774 5888888776  344 5668876542      133 357799999987  489999999765433

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.13  E-value=0.13  Score=46.18  Aligned_cols=38  Identities=34%  Similarity=0.528  Sum_probs=33.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++.++++.|+|. |.||+.+++.|...|++|+..+|++.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999995 89999999999999999999988764

>PRK06128 oxidoreductase; Provisional

Probab=94.08  E-value=0.16  Score=47.61  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSR  189 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~  189 (330)
                      .+.||++.|.|. |.||+.+|+.|...|++|+...+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            478999999995 89999999999999999976544

>PRK05442 malate dehydrogenase; Provisional

Probab=94.07  E-value=0.43  Score=45.83  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------CCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TY--------PFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~ell~~aDvV  213 (330)
                      ++|+|||. |.+|..+|-.+...|.       ++..+|.....  ..       ..        ....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            49999998 9999999998765443       68888875432  11       00        1123455889999999


Q ss_pred             EEeccC--Cc-cccc-cc--c----HH---HHhc-CCCCcEEEEcCCCcccCHHHHH
Q 020160          214 IICCAL--TD-QTHH-LI--N----KQ---VLLA-LGKKGVIINVGRGAIIDEKEMV  256 (330)
Q Consensus       214 ~l~~P~--t~-~t~~-li--~----~~---~l~~-mk~gailIN~~rg~~vd~~aL~  256 (330)
                      +++.-.  .+ +||. ++  |    ++   .+.. .++.+++|.++  ..+|.-..+
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v  139 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI  139 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence            997542  11 1221 11  1    11   2222 44688999987  556555533

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.05  E-value=0.1  Score=38.89  Aligned_cols=35  Identities=34%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS  194 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~  194 (330)
                      ++.|||.|.+|-++|..++.+|.+|+.+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58899999999999999999999999988876644

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.04  E-value=0.16  Score=48.64  Aligned_cols=64  Identities=22%  Similarity=0.308  Sum_probs=44.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCC--CEEEEECCCCCCCC--C-------CCC--C---CCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFG--CCVSYNSRNKKPSV--T-------YPF--Y---PDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~--~-------~~~--~---~~l~ell~~aDvV~l~~P  218 (330)
                      ++.++|+|||. |.||..+|..+...+  .++..+|.......  .       ...  .   .+..+.++.||+|++++-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56779999999 999999999998444  57888887322110  0       111  1   122678999999998764


Q ss_pred             C
Q 020160          219 L  219 (330)
Q Consensus       219 ~  219 (330)
                      .
T Consensus        86 ~   86 (321)
T PTZ00325         86 V   86 (321)
T ss_pred             C
Confidence            3

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.02  E-value=0.18  Score=47.87  Aligned_cols=83  Identities=12%  Similarity=0.104  Sum_probs=54.6

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------CCCCC-CCCHHHHhh-----cCCEEEEeccCCcc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------VTYPF-YPDVCELAA-----NSDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~ell~-----~aDvV~l~~P~t~~  222 (330)
                      ..++||||.|.||+..+..+.. -++++. .++++++..       .+... +.+.+++++     +.|+|+.++|...+
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4689999999999997777664 356765 566654321       13333 467889885     58889999875433


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 020160          223 THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+     -.....+.|..+|+-+
T Consensus        84 ~e-----~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 VR-----HAAKLREAGIRAIDLT  101 (302)
T ss_pred             HH-----HHHHHHHcCCeEEECC
Confidence            22     2233356677777765

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.00  E-value=0.17  Score=48.23  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc-C
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA-L  235 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~-m  235 (330)
                      .+|+||| -|-.|+++.+.|.... +++.....+.....     .+.++.++++|++++++|.....+      .... .
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s~~------~~~~~~   71 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAARE------AVALID   71 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHHHH------HHHHHH
Confidence            5899999 7999999999998655 35555443322211     234466788999999998663322      2222 2


Q ss_pred             CCCcEEEEcC
Q 020160          236 GKKGVIINVG  245 (330)
Q Consensus       236 k~gailIN~~  245 (330)
                      +.|..+||.|
T Consensus        72 ~~g~~VIDlS   81 (313)
T PRK11863         72 NPATRVIDAS   81 (313)
T ss_pred             hCCCEEEECC
Confidence            4688899988

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.98  E-value=0.15  Score=48.60  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=57.1

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC-----CCCHHHHhh---cCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF-----YPDVCELAA---NSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~ell~---~aDvV~l~~P~t~~  222 (330)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++++..     .+...     ..++.++..   ..|+++-+.... .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence            58999999999999999999999999 588887765431     12211     113334332   268877765421 1


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      +  +  ...++.+++++.++.+|.
T Consensus       248 ~--~--~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S--I--NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H--H--HHHHHHhhcCCEEEEEcc
Confidence            1  1  456777888888888875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.97  E-value=0.12  Score=48.80  Aligned_cols=85  Identities=18%  Similarity=0.104  Sum_probs=51.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEE-EEECCCCCCCCCC---CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNKKPSVTY---PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~~~~~~---~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .|+++.|+|.|.||...++.++.+|+++ .+.++........   .....-++.-...|+|+-++... .+   + ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~~---~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-SL---I-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-HH---H-HHHH
Confidence            4678999999999999999999999974 4555543221111   11111111112467777655321 11   1 3456


Q ss_pred             hcCCCCcEEEEcCC
Q 020160          233 LALGKKGVIINVGR  246 (330)
Q Consensus       233 ~~mk~gailIN~~r  246 (330)
                      +.+++++.++.+|-
T Consensus       219 ~~l~~~G~iv~~G~  232 (308)
T TIGR01202       219 RRLAKGGEIVLAGF  232 (308)
T ss_pred             HhhhcCcEEEEEee
Confidence            77888888777753

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.92  E-value=0.31  Score=46.46  Aligned_cols=88  Identities=16%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------C---CCCC-----CCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------T---YPFY-----PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~---~~~~-----~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||. |.+|..+|-.+...|.  ++..+|.. ....       .   ....     .++.+.++.||+|+++.-..
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 9999999999987774  68888876 2110       1   0111     23467899999999885432


Q ss_pred             --c-cccc-cc--c-------HHHHhcCCCCcEEEEcCCC
Q 020160          221 --D-QTHH-LI--N-------KQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       221 --~-~t~~-li--~-------~~~l~~mk~gailIN~~rg  247 (330)
                        + ++|- ++  |       .+.+..-.|.+++|+++-.
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence              2 2221 11  1       1233344689999998653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.85  E-value=0.061  Score=44.46  Aligned_cols=33  Identities=42%  Similarity=0.615  Sum_probs=28.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      .++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999998898 67777654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=93.83  E-value=0.5  Score=45.30  Aligned_cols=93  Identities=19%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             eEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CCC--------CCCCHHHHhhcCCEEE
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TYP--------FYPDVCELAANSDVLI  214 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~~--------~~~~l~ell~~aDvV~  214 (330)
                      +|+|||. |.+|..+|..+...|.       ++..+|+.+..  ..       ...        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999986554       48888875432  11       010        0124468899999999


Q ss_pred             EeccCCc---ccc-ccc--c-------HHHHhcC-CCCcEEEEcCCCcccCHHH
Q 020160          215 ICCALTD---QTH-HLI--N-------KQVLLAL-GKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       215 l~~P~t~---~t~-~li--~-------~~~l~~m-k~gailIN~~rg~~vd~~a  254 (330)
                      +..-...   +|+ .++  |       ...+... +|.+++|.++  ..+|.-+
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            8753321   111 111  1       1123334 5788888876  5555544

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.80  E-value=0.26  Score=47.08  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             eEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCC-----CC----CCC-----CCHHHHhhcCCEEEEeccCCc-
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-----TY----PFY-----PDVCELAANSDVLIICCALTD-  221 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-----~~----~~~-----~~l~ell~~aDvV~l~~P~t~-  221 (330)
                      ||+|||. |.+|..+|-.|...|.  ++..+|..+....     ..    ...     .++.+.++.||+|+++.-... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            6899999 9999999999876554  7888887652110     11    111     134689999999999865321 


Q ss_pred             --cccc-cc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160          222 --QTHH-LI--N-------KQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       222 --~t~~-li--~-------~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                        .+|. ++  |       .+.+..-.|.+++|+++-  .+|.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence              1111 11  1       122334468999999854  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.70  E-value=2.3  Score=38.57  Aligned_cols=43  Identities=21%  Similarity=0.149  Sum_probs=36.9

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|..-.++|++|.|||-|.++..=++.|..+|.+|+++++...
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~   59 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS   59 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3445568899999999999999988999999999999987654

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.67  E-value=0.11  Score=49.31  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=42.3

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC----------CC------CCCCCHHHHhhcCCEEEEecc
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV----------TY------PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~----------~~------~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ||+|||.|.+|..+|..+...|.  ++..+|...+...          .+      ....+-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            68999999999999998876665  6888887654321          10      001123578999999999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.66  E-value=0.2  Score=47.94  Aligned_cols=88  Identities=15%  Similarity=0.146  Sum_probs=55.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CC-CEEEEECCCCCCCC---CCCCCCCHHHHhh--cCCEEEEeccCCccccccccH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV---TYPFYPDVCELAA--NSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~---~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .|.+|.|+|.|.||...++.++. +| .+|++.++++.+..   ........+++.+  ..|+|+=++... .+...+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence            48899999999999999998886 54 68888887654321   1111111222222  368887766521 011112 4


Q ss_pred             HHHhcCCCCcEEEEcCC
Q 020160          230 QVLLALGKKGVIINVGR  246 (330)
Q Consensus       230 ~~l~~mk~gailIN~~r  246 (330)
                      +.++.+++++.++.+|-
T Consensus       241 ~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         241 QIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHhCcCCcEEEEEee
Confidence            56788899888887763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=93.64  E-value=0.61  Score=44.49  Aligned_cols=62  Identities=10%  Similarity=0.150  Sum_probs=48.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC-C-----------CC-CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP-S-----------VT-YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-----------~~-~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|+||++||- +++.++++..+..+|++|.+..+..-. .           .+ .....++++.++++|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            378999999996 799999999999999999887764321 0           01 12246889999999999873

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.64  E-value=0.39  Score=48.00  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhC-------CC--EEEEECCCCCCCCC---------------CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAF-------GC--CVSYNSRNKKPSVT---------------YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~-------G~--~V~~~~~~~~~~~~---------------~~~~~~l~ell~~aDvV  213 (330)
                      -+|+|||. |.+|..+|-.+...       |.  +++.+|+..+...+               .....+-.+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            49999999 99999999988755       44  67788876654210               01012445889999999


Q ss_pred             EEeccC--Ccc-ccc-cc--c-------HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          214 IICCAL--TDQ-THH-LI--N-------KQVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       214 ~l~~P~--t~~-t~~-li--~-------~~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      ++..-.  .+. +|. ++  |       ...+.. -.|.+++|.++  ..+|.-+.+-.-.+
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            998543  111 111 11  1       123344 46789999886  56666655443333

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=93.59  E-value=1.3  Score=41.94  Aligned_cols=89  Identities=13%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-C-------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-V-------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-~-------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|+|+..+|= .+++.++......+||+|....+..-.. .             +  .....+.++..+.+|+|..=+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            89999999995 5799999999999999998765543211 0             1  2235689999999999976543


Q ss_pred             CC--cccc-----------ccccHHHHhcCCCCcEEEEc
Q 020160          219 LT--DQTH-----------HLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       219 ~t--~~t~-----------~li~~~~l~~mk~gailIN~  244 (330)
                      .+  ++.+           .-+|.+.++.-+++++|.-|
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            21  2221           45677888888888888877

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.57  E-value=0.12  Score=48.76  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=44.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-------CCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-------PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-------~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|.|.| .|.||+.+++.|...|++|.+..|+....     .+.       ....++.+.++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4789999 59999999999999999999888764321     111       112356777899998887644

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.56  E-value=0.16  Score=47.13  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~  191 (330)
                      .|.++.|+|.|.+|...++.++.+|.+ |++.++++
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            588999999999999999999999997 77776654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.50  E-value=0.12  Score=49.63  Aligned_cols=85  Identities=27%  Similarity=0.328  Sum_probs=54.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC---CCC-----CCCCCC----CCHHH--HhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK---KPS-----VTYPFY----PDVCE--LAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~---~~~-----~~~~~~----~~l~e--ll~~aDvV~l~~P~t~~  222 (330)
                      .|.++.|+|.|.+|...++.++..|.+|++.+++.   .+.     .+....    .++.+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            58899999999999999999999999999888732   110     111110    11111  1234677777664221 


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                         .+ .+.++.+++++.++.+|.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               12 456677888887777664

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.49  E-value=0.17  Score=48.65  Aligned_cols=84  Identities=17%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCC---EEEEECCCCCCC--CCC---C-CCCCHH-HHhhcCCEEEEeccCCcccccc
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGC---CVSYNSRNKKPS--VTY---P-FYPDVC-ELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~~~~~~~~--~~~---~-~~~~l~-ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      +++|+|+| -|.+|+.+.+.|...|+   ++.+..+.....  ...   . ...+++ +.+.++|+|++++|.... +.+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s-~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS-KKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH-HHH
Confidence            46899999 69999999999998665   345543332221  111   0 111222 234789999999986532 222


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 020160          227 INKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~r  246 (330)
                      . ..   .++.|+++|+.|.
T Consensus        80 ~-~~---~~~~G~~VIDlS~   95 (334)
T PRK14874         80 A-PK---AAAAGAVVIDNSS   95 (334)
T ss_pred             H-HH---HHhCCCEEEECCc
Confidence            1 11   2356889998774

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.40  E-value=0.19  Score=47.59  Aligned_cols=83  Identities=20%  Similarity=0.280  Sum_probs=53.1

Q ss_pred             EEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------C--------CCCCCCHHHHhhcCCEEEEeccCC--c-c
Q 020160          163 IVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------T--------YPFYPDVCELAANSDVLIICCALT--D-Q  222 (330)
Q Consensus       163 IiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~--------~~~~~~l~ell~~aDvV~l~~P~t--~-~  222 (330)
                      |||.|.+|..+|..+...+.  ++..+|.......       .        .....+-.+.+++||+|+++.-..  + .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            69999999999999987665  6888888654321       0        011123457899999999975431  1 1


Q ss_pred             cc-ccc--c-------HHHHhcCCCCcEEEEcC
Q 020160          223 TH-HLI--N-------KQVLLALGKKGVIINVG  245 (330)
Q Consensus       223 t~-~li--~-------~~~l~~mk~gailIN~~  245 (330)
                      +| .++  |       .+.+....|.+++|+++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            22 111  1       12334457889999986

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=93.39  E-value=0.23  Score=45.83  Aligned_cols=86  Identities=16%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      |..+|-.+...|++|+..+++.+-..          +....++-.+..+.+.+.++-+|....|-++. ++.++.++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            67888889999999999988765321          33334455578899999999999998888754 68999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHH
Q 020160          240 VIINVGRGAIIDEKEMVGCL  259 (330)
Q Consensus       240 ilIN~~rg~~vd~~aL~~aL  259 (330)
                      ++.||..-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999875544   666666

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.38  E-value=0.33  Score=46.84  Aligned_cols=85  Identities=25%  Similarity=0.305  Sum_probs=52.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC---CC---CHHHHhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF---YP---DVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~---~~---~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+.+....      .+...   ..   .+.++....|+++-++.. +.+ 
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~-  260 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA-  260 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH-
Confidence            58899999999999999999999999987765543321      12110   11   122222345777665431 111 


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                       +  .+.++.+++++.++.+|.
T Consensus       261 -~--~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        261 -L--GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             -H--HHHHHHhcCCcEEEEeCC
Confidence             1  345667777777777763

>PRK10206 putative oxidoreductase; Provisional

Probab=93.37  E-value=0.14  Score=49.40  Aligned_cols=63  Identities=16%  Similarity=0.296  Sum_probs=42.6

Q ss_pred             eEEEEecChHHHH-HHHHHHh--CCCEEE-EECCCCCCCC-----C-CCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          160 RVGIVGLGSIGSE-VAKRLEA--FGCCVS-YNSRNKKPSV-----T-YPFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       160 ~vgIiG~G~IG~~-~A~~l~~--~G~~V~-~~~~~~~~~~-----~-~~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      ++||||+|.|++. .+..+..  -+++|. ++|++++...     + ...+.+++++++  +.|+|++++|...+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            7999999998863 3443422  357775 5777653221     1 234678999996  57999999986644

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=93.34  E-value=0.28  Score=47.41  Aligned_cols=83  Identities=17%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCC---EEEEE--CCCCCCCC---CCC-CCCCH-HHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGC---CVSYN--SRNKKPSV---TYP-FYPDV-CELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~--~~~~~~~~---~~~-~~~~l-~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      ...+|+|+| -|.+|+.+.+.|...++   ++.+.  .++..+..   +.. ...++ .+.+.++|+|++++|.... . 
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s-~-   83 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS-K-   83 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH-H-
Confidence            457899999 69999999999988555   33333  22222111   100 01111 2445889999999986522 2 


Q ss_pred             cccHHHHhc-CCCCcEEEEcC
Q 020160          226 LINKQVLLA-LGKKGVIINVG  245 (330)
Q Consensus       226 li~~~~l~~-mk~gailIN~~  245 (330)
                          +.... .+.|+.+||.|
T Consensus        84 ----~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         84 ----KFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             ----HHHHHHHhCCCEEEECC
Confidence                22222 25688999988

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=93.32  E-value=0.24  Score=45.86  Aligned_cols=61  Identities=15%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             eEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--C-------CCCCCCHHHHh------hc-CCEEEEeccCC
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--T-------YPFYPDVCELA------AN-SDVLIICCALT  220 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~ell------~~-aDvV~l~~P~t  220 (330)
                      +|.|.|. |.+|+.+++.|...|++|.+..|++....  +       +...+++.+.+      .. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            4778886 99999999999999999999988765321  1       11123555666      45 89999887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.26  E-value=0.27  Score=47.16  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=58.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCC--CC-------CC--------CCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKP--SV-------TY--------PFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~--~~-------~~--------~~~~~l~ell~~aDvV  213 (330)
                      .+|+|||. |.+|..+|-.+...|.       ++..+|.....  ..       ..        ....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999987664       68888875421  11       00        0113456889999999


Q ss_pred             EEeccCC--c-cccc-cc--cH-------HHHhcCCC-CcEEEEcCCCcccCHHH
Q 020160          214 IICCALT--D-QTHH-LI--NK-------QVLLALGK-KGVIINVGRGAIIDEKE  254 (330)
Q Consensus       214 ~l~~P~t--~-~t~~-li--~~-------~~l~~mk~-gailIN~~rg~~vd~~a  254 (330)
                      +++.-..  + +||. ++  |.       ..+....| .++++.++  ..+|.-.
T Consensus        84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            9986432  1 1221 11  11       12333344 88999886  5555444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.24  E-value=0.29  Score=45.88  Aligned_cols=62  Identities=19%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-------------CC-------CCCCCCHHHHhhcCCEEEE
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------------VT-------YPFYPDVCELAANSDVLII  215 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------~~-------~~~~~~l~ell~~aDvV~l  215 (330)
                      +|+++.|.| .|-||+.++++|...|++|.+..++....             ..       .....+++++++.+|+|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            478999999 69999999999999999998776654321             00       1112346677888998876


Q ss_pred             ecc
Q 020160          216 CCA  218 (330)
Q Consensus       216 ~~P  218 (330)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=93.23  E-value=0.052  Score=43.67  Aligned_cols=94  Identities=20%  Similarity=0.308  Sum_probs=57.3

Q ss_pred             ecChHHHHHHHHHHhC----CCEEE-EECCC--CCCC-----CCCCCCCCHHHHhh--cCCEEEEeccCCccccccccHH
Q 020160          165 GLGSIGSEVAKRLEAF----GCCVS-YNSRN--KKPS-----VTYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       165 G~G~IG~~~A~~l~~~----G~~V~-~~~~~--~~~~-----~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      |+|.||+.+++.+...    +++|. +++++  ....     .......++++++.  ..|+|+=|.+..+..     .-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence            8999999999999865    67775 45555  0111     12234568999988  899999885433222     23


Q ss_pred             HHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcCC
Q 020160          231 VLLALGKKGVIINVGRGAIID---EKEMVGCLLRGE  263 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd---~~aL~~aL~~g~  263 (330)
                      ..+.++.|.-+|-.+-|.+.|   .+.|.++.+++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g  111 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNG  111 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcC
Confidence            455577888899888888772   333444444443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.17  E-value=0.33  Score=46.17  Aligned_cols=77  Identities=18%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG  236 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk  236 (330)
                      -+|+|+| -|-.|.++.++|.... +++.....+...    . ..+.+++++++|++++++|.... ..+.  ..+  .+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~----~-~~~~~~~~~~~D~vFlalp~~~s-~~~~--~~~--~~   71 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK----D-AAERAKLLNAADVAILCLPDDAA-REAV--SLV--DN   71 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc----C-cCCHhHhhcCCCEEEECCCHHHH-HHHH--HHH--Hh
Confidence            3799999 6999999999998643 466554332211    1 12456788899999999996533 2221  112  24


Q ss_pred             CCcEEEEcC
Q 020160          237 KKGVIINVG  245 (330)
Q Consensus       237 ~gailIN~~  245 (330)
                      .|..+||.|
T Consensus        72 ~g~~VIDlS   80 (310)
T TIGR01851        72 PNTCIIDAS   80 (310)
T ss_pred             CCCEEEECC
Confidence            688899988

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02214 cinnamoyl-CoA reductase

Probab=93.15  E-value=0.29  Score=46.93  Aligned_cols=63  Identities=24%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC------------C-------CCCCCCCHHHHhhcCCEEEE
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS------------V-------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~-------~~~~~~~l~ell~~aDvV~l  215 (330)
                      +.++++.|.|. |-||+.+++.|...|++|.+..|+....            .       ......+++++++.+|+|+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            67899999997 9999999999999999998887754320            0       00112345677888998877


Q ss_pred             ecc
Q 020160          216 CCA  218 (330)
Q Consensus       216 ~~P  218 (330)
                      +..
T Consensus        88 ~A~   90 (342)
T PLN02214         88 TAS   90 (342)
T ss_pred             ecC
Confidence            664

>PRK15076 alpha-galactosidase; Provisional

Probab=93.14  E-value=0.13  Score=51.33  Aligned_cols=109  Identities=10%  Similarity=0.034  Sum_probs=65.7

Q ss_pred             ceEEEEecChHHHHHHH--HH---HhC-CCEEEEECCCCCCCC-------------C----CCCCCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVGLGSIGSEVAK--RL---EAF-GCCVSYNSRNKKPSV-------------T----YPFYPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~ell~~aDvV~l  215 (330)
                      ++|+|||.|.+|...+-  .+   .++ |.+|..+|..++...             +    .....++.+.++.||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955443  22   233 458999998764311             1    1123467799999999999


Q ss_pred             eccCC--cccc-----------------cc----------cc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160          216 CCALT--DQTH-----------------HL----------IN-------KQVLLALGKKGVIINVGRGAIIDEKEMVGCL  259 (330)
Q Consensus       216 ~~P~t--~~t~-----------------~l----------i~-------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL  259 (330)
                      +.-..  +.-+                 ..          -+       .+.+....|++++||.+-..=+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            87553  1110                 00          00       1223445689999999876544444454 33


Q ss_pred             HcCCceEEE
Q 020160          260 LRGEIGGAG  268 (330)
Q Consensus       260 ~~g~i~ga~  268 (330)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            444666554

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.11  E-value=0.39  Score=45.29  Aligned_cols=38  Identities=37%  Similarity=0.503  Sum_probs=33.0

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      ..|.+.+|.|+|+|.+|.++|+.|...|. +++.+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            35889999999999999999999999998 577777653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK06182 short chain dehydrogenase; Validated

Probab=93.09  E-value=0.14  Score=47.04  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .++++.|.|. |.||+.+|+.|...|++|+..+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999995 89999999999999999998888654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.06  E-value=0.14  Score=51.58  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCC--CHHHHhhcCCEEEEec--c-CCccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYP--DVCELAANSDVLIICC--A-LTDQT  223 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~--~l~ell~~aDvV~l~~--P-~t~~t  223 (330)
                      .+.++++.|+|+|..|.++|+.|...|++|.++|+.....      .+.....  ...+.+.++|+|+..-  | ..+..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            4788999999999999999999999999999999754321      1222211  1234466889887752  2 12211


Q ss_pred             c-------ccccHHHHhc-------C-CCC-cEEEEcCCCcccCHHHHHHHHHcC
Q 020160          224 H-------HLINKQVLLA-------L-GKK-GVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       224 ~-------~li~~~~l~~-------m-k~g-ailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .       .+++.-.+..       + ++. .+-|--+-|+.--..-+...|+..
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            1       1223222321       1 122 344444568877777777777653

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=93.00  E-value=0.55  Score=45.34  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             cccCCceEEEEec---ChHHHHHHHHHH-hCCCEEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEe
Q 020160          154 SKLGGKRVGIVGL---GSIGSEVAKRLE-AFGCCVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       154 ~~l~g~~vgIiG~---G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      ..+.|+||++||=   +++..+.+..+. .+|++|.+..+..-...          +  +....++++.++++|+|..-
T Consensus       155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            3478999999997   588888888766 45999987776432110          1  12246899999999999873

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=92.93  E-value=0.36  Score=45.49  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEE-EECCCCCCC-------CCCC-CCCCHHHHhh--cCCEEEEeccCCcccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVS-YNSRNKKPS-------VTYP-FYPDVCELAA--NSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~-------~~~~-~~~~l~ell~--~aDvV~l~~P~t~~t~~l  226 (330)
                      .++||||.|.||+..+..+.. -++++. +++++++..       .+.. .+.+.++++.  +-|+|++++|...+.+  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e--   79 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR--   79 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            479999999999988776654 456765 466655431       1332 2457888885  5788999998654322  


Q ss_pred             ccHHHHhcCCCCcEEEEc
Q 020160          227 INKQVLLALGKKGVIINV  244 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~  244 (330)
                         -....++.|..+++-
T Consensus        80 ---~a~~al~aGk~VIde   94 (285)
T TIGR03215        80 ---HARLLAELGKIVIDL   94 (285)
T ss_pred             ---HHHHHHHcCCEEEEC
Confidence               223334556555443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK14851 hypothetical protein; Provisional

Probab=92.92  E-value=0.23  Score=52.34  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=30.3

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEEC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNS  188 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~  188 (330)
                      ..|++++|+|+|+|.+|..+|+.|...|. ++..+|
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD   74 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIAD   74 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEc
Confidence            45899999999999999999999998887 555555

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.87  E-value=0.17  Score=50.94  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCCCC--CCHHHHhhcCCEEEEeccCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYPFY--PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~ell~~aDvV~l~~P~t  220 (330)
                      +..+.++++.|||.|.+|.++|+.|+..|++|.++++.....          .+....  ... +....+|+|+++.-..
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence            445789999999999999999999999999999998654211          121111  111 1345689888875333


Q ss_pred             cccc----------ccccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 020160          221 DQTH----------HLINK-QVL-LALGK----KGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       221 ~~t~----------~li~~-~~l-~~mk~----gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      +.+.          .+++. +.+ ..+.+    ..+-|--+.|+.--..-+...|+.
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            3222          12222 222 33322    234454456777766667777765

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=92.82  E-value=0.81  Score=43.14  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEE-EECCC--CCCCCCCCCCCCHHHHhhc--CCEEEEeccCCccccccccHH
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVS-YNSRN--KKPSVTYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~-~~~~~--~~~~~~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .+.+|.|.| -|.+|+.+-+.+.+.|.++. .+++.  .....+...+.+++|+-..  .|+.++++|.. .+...+. +
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~-e   82 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIF-E   82 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHH-H
Confidence            356789999 59999999999999998743 34554  2333466678899999887  79999999954 3333332 2


Q ss_pred             HHhcCCC-CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          231 VLLALGK-KGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       231 ~l~~mk~-gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ..+ ..- .++++.-+-+. -++++|.+..++..++
T Consensus        83 ~~~-~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir  116 (286)
T TIGR01019        83 AID-AGIELIVCITEGIPV-HDMLKVKRYMEESGTR  116 (286)
T ss_pred             HHH-CCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence            222 232 33444433333 3667888888877654

ATP citrate lyases appear to form an outgroup.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.79  E-value=0.18  Score=41.92  Aligned_cols=32  Identities=38%  Similarity=0.544  Sum_probs=28.3

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      +|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 688887653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=92.76  E-value=0.31  Score=46.74  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCC-------CEEEEECCCCCC--CCC----CC-----------CCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFG-------CCVSYNSRNKKP--SVT----YP-----------FYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G-------~~V~~~~~~~~~--~~~----~~-----------~~~~l~ell~~aDvV  213 (330)
                      .+|+|+|. |.+|+.++..|...+       .+|..+|+.+..  ..+    ..           ...++.+.++.||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            37999999 999999999998644       478888875422  111    00           124566889999999


Q ss_pred             EEeccCCc---ccc-ccc--cH-------HHHhcC-CCCcEEEEcCCCcccCHHH
Q 020160          214 IICCALTD---QTH-HLI--NK-------QVLLAL-GKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       214 ~l~~P~t~---~t~-~li--~~-------~~l~~m-k~gailIN~~rg~~vd~~a  254 (330)
                      +.+.-...   .++ .++  |.       ..+... +|++++|.++  ..+|.-.
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA  135 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence            88754321   121 111  11       123333 5788888886  4454433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=92.75  E-value=0.78  Score=45.22  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=47.1

Q ss_pred             ccCCceEEEEec-----C---hHHHHHHHHHHhCCCEEEEECCCCCC---C-----------CC--CCCCCCHHHHhhcC
Q 020160          155 KLGGKRVGIVGL-----G---SIGSEVAKRLEAFGCCVSYNSRNKKP---S-----------VT--YPFYPDVCELAANS  210 (330)
Q Consensus       155 ~l~g~~vgIiG~-----G---~IG~~~A~~l~~~G~~V~~~~~~~~~---~-----------~~--~~~~~~l~ell~~a  210 (330)
                      .+.|+||+|+|-     |   ++.++++..+..+|++|.+..+..-.   .           .+  +....++++.++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            378999999985     5   56789999999999999888765311   0           01  12357899999999


Q ss_pred             CEEEEe
Q 020160          211 DVLIIC  216 (330)
Q Consensus       211 DvV~l~  216 (330)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999875

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=92.72  E-value=0.62  Score=38.88  Aligned_cols=93  Identities=18%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC---------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKPS---------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII  242 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI  242 (330)
                      ..+++|...|++|++=.-.....         .|+....+.++++++||+|+-.-|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            56778888899998754332211         13334456679999999998765543        56778899999999


Q ss_pred             EcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                      -...-.  ....+++.|.++++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            765544  588899999999998787776544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.70  E-value=0.22  Score=47.41  Aligned_cols=85  Identities=22%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCC-HHHHhhcCCEEEEeccCCccccccccHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPD-VCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .|.++.|.|.|.+|...++.++.+|.+|++.++++++.     .+.....+ .++.-...|+++.+.... .   .+ ..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence            48899999999999999999999999998887765431     12211111 011112357666554332 1   12 46


Q ss_pred             HHhcCCCCcEEEEcCC
Q 020160          231 VLLALGKKGVIINVGR  246 (330)
Q Consensus       231 ~l~~mk~gailIN~~r  246 (330)
                      .++.+++++.++.+|.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            7788999998888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.70  E-value=0.25  Score=48.48  Aligned_cols=39  Identities=31%  Similarity=0.309  Sum_probs=34.6

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ++...++++.|+|. |.||+.+++.|...|++|....|+.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            45678999999995 9999999999999999999888765

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=92.67  E-value=0.56  Score=44.73  Aligned_cols=83  Identities=24%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-------------C-----------------CC------CCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-------------V-----------------TY------PFYPD  202 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-------------~-----------------~~------~~~~~  202 (330)
                      +|.|||+|.+|.++++.|...|. ++..+|...-..             .                 ..      ....+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            58999999999999999998887 567766432110             0                 00      00111


Q ss_pred             ---HHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          203 ---VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       203 ---l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                         ..+++++.|+|+.++ .+.+.+..+++-....   +--+|+.+.
T Consensus        81 ~~~~~~f~~~~DvVv~a~-Dn~~ar~~in~~c~~~---~ip~I~~gt  123 (312)
T cd01489          81 PDFNVEFFKQFDLVFNAL-DNLAARRHVNKMCLAA---DVPLIESGT  123 (312)
T ss_pred             ccchHHHHhcCCEEEECC-CCHHHHHHHHHHHHHC---CCCEEEEec
Confidence               236788899888877 4556676666554432   344666544

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.67  E-value=0.47  Score=45.91  Aligned_cols=82  Identities=17%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHh-CCCE---EEEEC-C-CCCCCCCC-----CC-CCCHHHHhhcCCEEEEeccCCccc
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEA-FGCC---VSYNS-R-NKKPSVTY-----PF-YPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~-~G~~---V~~~~-~-~~~~~~~~-----~~-~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      ++.+|||||. |..|+.+.+.|.. -.+.   +..+. . +..+....     .. ..+.++ +.++|++++++|.. ..
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s   81 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS   81 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence            4579999996 9999999999983 5665   43332 2 21111111     00 113333 48899999999865 22


Q ss_pred             cccccHHHHhc-CCCCcEEEEcC
Q 020160          224 HHLINKQVLLA-LGKKGVIINVG  245 (330)
Q Consensus       224 ~~li~~~~l~~-mk~gailIN~~  245 (330)
                      +     +.... .+.|+.+|+.|
T Consensus        82 ~-----~~~~~~~~~G~~VID~S   99 (347)
T PRK06728         82 R-----QFVNQAVSSGAIVIDNT   99 (347)
T ss_pred             H-----HHHHHHHHCCCEEEECc
Confidence            2     22222 35688999987

>PRK13529 malate dehydrogenase; Provisional

Probab=92.56  E-value=3.4  Score=42.41  Aligned_cols=212  Identities=16%  Similarity=0.163  Sum_probs=127.8

Q ss_pred             cCCCcceeEEcCCCCCC-CChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccc
Q 020160           77 LLPEVRLVVATSAGLNH-IDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSK  155 (330)
Q Consensus        77 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~  155 (330)
                      .+|+. +|+.---+..+ +.+..--+..|.+.|.-=   .-+|-.+++-+|+.+|-.                    |+.
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r~~--------------------g~~  292 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI---QGTGAVTLAGLLAALKIT--------------------GEP  292 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc---chHHHHHHHHHHHHHHHh--------------------CCC
Confidence            35654 55555444433 333333345799988643   335666788888777742                    456


Q ss_pred             cCCceEEEEecChHHHHHHHHHHh----CCC-------EEEEECCCCC-----CCC---------CCC---------CCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEA----FGC-------CVSYNSRNKK-----PSV---------TYP---------FYP  201 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~----~G~-------~V~~~~~~~~-----~~~---------~~~---------~~~  201 (330)
                      +...++.|.|.|..|-.+|+.+..    .|.       ++..+|+..-     ...         ...         ...
T Consensus       293 l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~  372 (563)
T PRK13529        293 LSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVI  372 (563)
T ss_pred             hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCC
Confidence            888999999999999999999875    587       6777776531     000         000         124


Q ss_pred             CHHHHhhcC--CEEEEeccCCccccccccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-ceEEEEecCC
Q 020160          202 DVCELAANS--DVLIICCALTDQTHHLINKQVLLALGK---KGVIINVGRGAIIDEKEMVGCLL--RGE-IGGAGLDVFE  273 (330)
Q Consensus       202 ~l~ell~~a--DvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~  273 (330)
                      +|.|+++..  |+++=+-    ..-+.|+++.++.|.+   .+++.=.|.-.-.-|-.-.+|.+  +|+ |.+.|.   .
T Consensus       373 ~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---p  445 (563)
T PRK13529        373 SLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---P  445 (563)
T ss_pred             CHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---C
Confidence            789999888  8887532    2346899999999987   88999888877644444444444  354 433332   1


Q ss_pred             CCCCCCc----ccccCCceEEcCCCCCCCH-----HHHHHHHHHHHHHHHHHHcC
Q 020160          274 NEPDVPE----QLFALDNVVLSPHSAVFTP-----ESFKDVCELAVANLEAFFSN  319 (330)
Q Consensus       274 ~EP~~~~----~L~~~~nvilTPHia~~t~-----~~~~~~~~~~~~nl~~~~~g  319 (330)
                      -.|....    .-=+..|+.+=|=++-..-     .--+.|...+++-|-++..-
T Consensus       446 f~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~  500 (563)
T PRK13529        446 FAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPL  500 (563)
T ss_pred             CCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence            1111100    1224567888887654321     11245555556656555543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.50  E-value=0.17  Score=51.97  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      -.|+++.|.|. |.||+.++++|...|++|.+..|+..
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999995 99999999999999999998877643

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.48  E-value=0.2  Score=44.76  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             eEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++.|.|. |.||+++|+.+...|++|+..+|+.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~   35 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD   35 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5788886 89999999999999999998887643

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.38  E-value=0.11  Score=48.48  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      ++++.|+|.|..+++++..|...|+ +|.+++|+.++
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            4689999999999999999999998 59999998653

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=92.37  E-value=0.38  Score=52.64  Aligned_cols=66  Identities=26%  Similarity=0.330  Sum_probs=53.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC--------------------------CCC--------CCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS--------------------------VTY--------PFY  200 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------------------~~~--------~~~  200 (330)
                      .-.|++|+|||-|.-|-+.|..|...|+.|++|.|+.+..                          .+.        ...
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            3579999999999999999999999999999999876531                          011        123


Q ss_pred             CCHHHHhhcCCEEEEeccCC
Q 020160          201 PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       201 ~~l~ell~~aDvV~l~~P~t  220 (330)
                      .++++|.+.-|-|+++.-.|
T Consensus      1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             ccHHHHhhccCeEEEEeCCC
Confidence            68999999999999987544

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.35  E-value=0.43  Score=44.56  Aligned_cols=38  Identities=29%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..+.||++-|.| .|.||..+|+++...|++|+..+++.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999999 58899999999999999998887764

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=92.33  E-value=0.48  Score=44.63  Aligned_cols=62  Identities=21%  Similarity=0.160  Sum_probs=44.4

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC---------C-----------CCCCCCCHHHHhhcCCEEEE
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------V-----------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~-----------~~~~~~~l~ell~~aDvV~l  215 (330)
                      .||++.|.| .|-||+.++++|...|++|.+..++....         .           ......+++++++..|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            478999999 59999999999999999997765543210         0           01112346677888998877


Q ss_pred             ecc
Q 020160          216 CCA  218 (330)
Q Consensus       216 ~~P  218 (330)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            664

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.31  E-value=0.26  Score=47.20  Aligned_cols=66  Identities=23%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             ccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCC-------CCCCCHHHHhhcCCEEE
Q 020160          153 GSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTY-------PFYPDVCELAANSDVLI  214 (330)
Q Consensus       153 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~-------~~~~~l~ell~~aDvV~  214 (330)
                      +++.+++++.|.| .|-||+.+++.|...|++|++.++.....          ...       ....++++++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            5678899999999 69999999999999999998876653211          001       11123556677889776


Q ss_pred             Eecc
Q 020160          215 ICCA  218 (330)
Q Consensus       215 l~~P  218 (330)
                      -+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            6553

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.29  E-value=0.1  Score=46.80  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             EEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          161 VGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTY-------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       161 vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~-------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      |.|+|. |.+|+.+++.|..-|++|.+..|.....       .+.       ...+++.+.++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678995 9999999999999999999887765321       121       11245677899999999999854

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=92.29  E-value=0.36  Score=46.57  Aligned_cols=83  Identities=11%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHh--CC-CEEEEECCCCC--CCC---CCC-CCCCHHHH-hhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEA--FG-CCVSYNSRNKK--PSV---TYP-FYPDVCEL-AANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~--~G-~~V~~~~~~~~--~~~---~~~-~~~~l~el-l~~aDvV~l~~P~t~~t~~  225 (330)
                      .+.+|+|||. |-+|+++.+.|..  +- .++........  +..   +.. ...++++. +.++|++++++|....   
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s---   79 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREAS---   79 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHH---
Confidence            4679999996 9999999999987  43 35554432221  111   100 11244444 3789999999986522   


Q ss_pred             cccHHHHhc-CCCCcEEEEcC
Q 020160          226 LINKQVLLA-LGKKGVIINVG  245 (330)
Q Consensus       226 li~~~~l~~-mk~gailIN~~  245 (330)
                         .+.... .+.|+.+|+.|
T Consensus        80 ---~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         80 ---AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             ---HHHHHHHHHCCCEEEECC
Confidence               233332 25688999988

>PRK10537 voltage-gated potassium channel; Provisional

Probab=92.27  E-value=0.26  Score=48.50  Aligned_cols=33  Identities=15%  Similarity=0.043  Sum_probs=28.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      ...+-|+|+|.+|+.+++.|+..|.++.+.+.+
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence            567999999999999999999999988777654

>PRK12937 short chain dehydrogenase; Provisional

Probab=92.23  E-value=0.5  Score=42.19  Aligned_cols=35  Identities=34%  Similarity=0.444  Sum_probs=30.4

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      +.|+++.|.| .|.||+.+|+.+...|++|+...++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~   38 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG   38 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            5789999999 5999999999999999998766543

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=92.23  E-value=0.2  Score=54.94  Aligned_cols=90  Identities=13%  Similarity=0.203  Sum_probs=62.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEE-------------------------EEE--CCC-----CCCCCCC------
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCV-------------------------SYN--SRN-----KKPSVTY------  197 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V-------------------------~~~--~~~-----~~~~~~~------  197 (330)
                      +.-.++.|+|.|++|+..++.+..+|.+.                         +++  .+.     ..+...+      
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~  280 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY  280 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence            44578999999999999999999886541                         100  000     0000000      


Q ss_pred             ----CCCCC-HHHHhhcCCEEEEeccCCccccccccHH-HHhcCCCCc----EEEEcC
Q 020160          198 ----PFYPD-VCELAANSDVLIICCALTDQTHHLINKQ-VLLALGKKG----VIINVG  245 (330)
Q Consensus       198 ----~~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~-~l~~mk~ga----ilIN~~  245 (330)
                          .+.+. +++.+..+|+++.++-..+.+..++..+ ..+.||+|.    ++++++
T Consensus       281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                01112 3468899999999998888888899888 777899998    888875

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=92.21  E-value=0.54  Score=44.43  Aligned_cols=88  Identities=16%  Similarity=0.192  Sum_probs=55.2

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CC-----------------CC------CCC-C
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SV-----------------TY------PFY-P  201 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~-----------------~~------~~~-~  201 (330)
                      +|.|||+|.+|.++++.|...|. ++...|...-.             ..                 ..      ... .
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            58999999999999999998887 56666542110             00                 00      001 1


Q ss_pred             CHHHHhhcCCEEEEeccCCccccccccHHHHhcC-----CCCcEEEEcCCCc
Q 020160          202 DVCELAANSDVLIICCALTDQTHHLINKQVLLAL-----GKKGVIINVGRGA  248 (330)
Q Consensus       202 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m-----k~gailIN~~rg~  248 (330)
                      .-.+++++.|+|+.++- +.++|..++.......     +.+.-+|..|..+
T Consensus        81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence            22467889998888764 4567777776555443     2234567665533

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.06  E-value=0.31  Score=45.60  Aligned_cols=60  Identities=22%  Similarity=0.149  Sum_probs=44.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-------CCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-------FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~ell~~aDvV~l~~P  218 (330)
                      +++.|.| .|-||+.+++.|...|++|.+.+|++....     +..       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4788998 599999999999999999999888654321     111       12345677888998887664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.06  E-value=0.37  Score=46.24  Aligned_cols=36  Identities=31%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +++++|.|.| .|-||+.+++.|...|.+|+++++..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5679999999 59999999999999999999998743

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.05  E-value=0.37  Score=46.83  Aligned_cols=61  Identities=21%  Similarity=0.271  Sum_probs=43.5

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-------CCCCHHHHhhcCCEEEEec
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-------FYPDVCELAANSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~ell~~aDvV~l~~  217 (330)
                      .+|+|.|.|. |-||+.+++.|...|++|++.+|......     ...       ...++..++.++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5789999997 99999999999999999999887532110     001       0122344567899887655

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=91.97  E-value=0.3  Score=46.84  Aligned_cols=29  Identities=38%  Similarity=0.462  Sum_probs=23.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCC----CEEEEEC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFG----CCVSYNS  188 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~  188 (330)
                      +|||+|+|+||+.+.+.+...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5899999999999999987653    6776543

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=91.93  E-value=0.78  Score=46.79  Aligned_cols=91  Identities=13%  Similarity=0.047  Sum_probs=64.1

Q ss_pred             ccCCceEEEEec---ChHHHHHHHHHHhCC-CEEEEECCCCCC-C---------CC--CCCCCCHHHHhhcCCEE--EE-
Q 020160          155 KLGGKRVGIVGL---GSIGSEVAKRLEAFG-CCVSYNSRNKKP-S---------VT--YPFYPDVCELAANSDVL--II-  215 (330)
Q Consensus       155 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~---------~~--~~~~~~l~ell~~aDvV--~l-  215 (330)
                      .+.|.+|++||=   |++..+++..+..|| ++|.+..+..-. .         .+  +....++++.++++|+.  +. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            467999999997   699999999999998 999877664321 1         02  22357899999999952  22 


Q ss_pred             ------eccCC-----cc--ccccccHHHHhcCCCCcEEEEcC
Q 020160          216 ------CCALT-----DQ--THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       216 ------~~P~t-----~~--t~~li~~~~l~~mk~gailIN~~  245 (330)
                            .....     ..  -...++++.++.+|++++|.-+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12111     00  13456888999999999988874

>PLN02427 UDP-apiose/xylose synthase

Probab=91.93  E-value=0.36  Score=46.86  Aligned_cols=65  Identities=17%  Similarity=0.105  Sum_probs=46.6

Q ss_pred             ccccCCceEEEEe-cChHHHHHHHHHHhC-CCEEEEECCCCCCC-----C-------CC-------CCCCCHHHHhhcCC
Q 020160          153 GSKLGGKRVGIVG-LGSIGSEVAKRLEAF-GCCVSYNSRNKKPS-----V-------TY-------PFYPDVCELAANSD  211 (330)
Q Consensus       153 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-----~-------~~-------~~~~~l~ell~~aD  211 (330)
                      |+.++.++|.|.| .|-||+.+++.|... |++|++.+++....     .       ..       ....++.++++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            6667888999999 599999999999987 58999888654210     0       01       11224566788899


Q ss_pred             EEEEec
Q 020160          212 VLIICC  217 (330)
Q Consensus       212 vV~l~~  217 (330)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            876554

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=91.84  E-value=0.36  Score=46.79  Aligned_cols=57  Identities=25%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C--C-CCCCC---HHHHhh--cCCEEEEe
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T--Y-PFYPD---VCELAA--NSDVLIIC  216 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~--~-~~~~~---l~ell~--~aDvV~l~  216 (330)
                      +|+|||-|..|..+++.++.+|++|++++.++....    .  + ....+   +.++++  ++|.|+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~   69 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE   69 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence            689999999999999999999999999988764321    0  0 01223   445555  68888643

This enzyme is an alternative to PurN (TIGR00639)

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=91.83  E-value=0.21  Score=49.38  Aligned_cols=30  Identities=27%  Similarity=0.330  Sum_probs=26.1

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEEEEC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYNS  188 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~  188 (330)
                      .+|||.|||+||+.+++.+.. ++++|++.+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN  116 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN  116 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence            499999999999999999875 789988743

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=91.81  E-value=1.1  Score=41.50  Aligned_cols=122  Identities=21%  Similarity=0.201  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 020160          117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF----GC-------CVS  185 (330)
Q Consensus       117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  185 (330)
                      +|=.+++-+|+.+|-.                    |+.|...++.|+|.|.-|-.+|+.+...    |.       +++
T Consensus         4 TaaV~lAgll~Al~~~--------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~   63 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT--------------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW   63 (255)
T ss_dssp             HHHHHHHHHHHHHHHH--------------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred             hHHHHHHHHHHHHHHh--------------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence            4555677777666652                    4568899999999999999999999877    87       477


Q ss_pred             EECCCC----CCCC-------------CCCCCCCHHHHhhcC--CEEEEeccCCccccccccHHHHhcCCC---CcEEEE
Q 020160          186 YNSRNK----KPSV-------------TYPFYPDVCELAANS--DVLIICCALTDQTHHLINKQVLLALGK---KGVIIN  243 (330)
Q Consensus       186 ~~~~~~----~~~~-------------~~~~~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN  243 (330)
                      .+|+..    ....             ......+|.|.++.+  |+++=.-    ...+.|+++.++.|.+   .+++.=
T Consensus        64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~  139 (255)
T PF03949_consen   64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP  139 (255)
T ss_dssp             EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred             EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence            776642    1100             111124899999998  9887642    2567899999999987   889999


Q ss_pred             cCCCcccCHHHHHHHHHcC
Q 020160          244 VGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       244 ~~rg~~vd~~aL~~aL~~g  262 (330)
                      .|...---|-.-.++.+-+
T Consensus       140 LSNPt~~aE~~peda~~~t  158 (255)
T PF03949_consen  140 LSNPTPKAECTPEDAYEWT  158 (255)
T ss_dssp             -SSSCGGSSS-HHHHHHTT
T ss_pred             CCCCCCcccCCHHHHHhhC
Confidence            9987764444444444443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=91.77  E-value=1.5  Score=42.30  Aligned_cols=62  Identities=13%  Similarity=0.014  Sum_probs=45.5

Q ss_pred             c-CCceEEEEecC-------hHHHHHHHHHHhCCCEEEEECC-CCCCC--------------CC--CCCCCCHHHHhhcC
Q 020160          156 L-GGKRVGIVGLG-------SIGSEVAKRLEAFGCCVSYNSR-NKKPS--------------VT--YPFYPDVCELAANS  210 (330)
Q Consensus       156 l-~g~~vgIiG~G-------~IG~~~A~~l~~~G~~V~~~~~-~~~~~--------------~~--~~~~~~l~ell~~a  210 (330)
                      + .|+||+|+|.|       ++.++++..+..+|++|.+..+ ..-..              .+  +....++++.++++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68999887654       7888999999999999988877 32110              01  12346889999999


Q ss_pred             CEEEEec
Q 020160          211 DVLIICC  217 (330)
Q Consensus       211 DvV~l~~  217 (330)
                      |+|..-.
T Consensus       246 Dvvy~~~  252 (335)
T PRK04523        246 DVVYAKS  252 (335)
T ss_pred             CEEEece
Confidence            9997643

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=91.75  E-value=0.45  Score=45.37  Aligned_cols=64  Identities=19%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             ceEEEEecChHHHHHHHHHHh--CCCEEEEECCCCCCCCCC---------------CCCC-CHHHHhhcCCEEEEec--c
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--FGCCVSYNSRNKKPSVTY---------------PFYP-DVCELAANSDVLIICC--A  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~~~~~~~~~~~---------------~~~~-~l~ell~~aDvV~l~~--P  218 (330)
                      ++|+|||.|.||+++|-+|..  ++-++..+|...+...+.               .... .-.+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            589999999999999999854  444788888874332110               0011 1146789999999997  6


Q ss_pred             CCcc
Q 020160          219 LTDQ  222 (330)
Q Consensus       219 ~t~~  222 (330)
                      ..|.
T Consensus        81 rKpG   84 (313)
T COG0039          81 RKPG   84 (313)
T ss_pred             CCCC
Confidence            5554

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.75  E-value=0.51  Score=46.40  Aligned_cols=62  Identities=24%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             cCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      ..|++|+|+|+.          .-...+++.|...|.+|.+||+......  +..+..++.+.+++||.|++..
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNR  367 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcC
Confidence            468999999993          4577999999999999999999754322  3445679999999999999864

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.72  E-value=0.23  Score=44.08  Aligned_cols=37  Identities=32%  Similarity=0.536  Sum_probs=32.1

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|||+|.+|.++|+.|...|. +++.+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35889999999999999999999999998 47777654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.72  E-value=0.41  Score=44.04  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=42.4

Q ss_pred             eEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcC--CEEEEeccC
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANS--DVLIICCAL  219 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~a--DvV~l~~P~  219 (330)
                      +|.|+|. |.||+.+++.|...|++|++.+|...   ......++.+++..+  |+|+.++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            4788995 99999999999999999999887522   122234566777765  998876643

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.64  E-value=0.61  Score=44.20  Aligned_cols=85  Identities=28%  Similarity=0.338  Sum_probs=53.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC---CCCC---HHHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP---FYPD---VCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~---~~~~---l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .|.++.|.|.|.+|+.+++.++.+|++|++.+++.+...     +..   ...+   ..+.-...|+++-+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            478999999999999999999999999988877643210     110   0011   1112244677766655321    


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 020160          226 LINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~r  246 (330)
                       .-.+.++.+++++.++++|.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             11445666777777777654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=91.58  E-value=0.84  Score=46.62  Aligned_cols=138  Identities=17%  Similarity=0.176  Sum_probs=94.7

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +..+.|+...|+|-.. +|..++..|+.....|+.+-..         ..++.|.+.++|+|+.++--.    +++-.  
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~P----efVKg--  221 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQP----EFVKG--  221 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCCc----ceeec--
Confidence            3458899999999765 5899999999999999876332         247889999999999988432    23333  


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVA  311 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~  311 (330)
                       +++|||+++|++|--.+-|..-     ++|.-  ..-||-..+-..-       --.+||-=||.-+=+..-+.+..++
T Consensus       222 -dWiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Akev-------as~ITPVPGGVGPMTVAMLmqNtve  286 (935)
T KOG4230|consen  222 -DWIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKEV-------ASFITPVPGGVGPMTVAMLMQNTVE  286 (935)
T ss_pred             -ccccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhhh-------hhccccCCCCcchHHHHHHHHHHHH
Confidence             4579999999998766554321     22322  4567765544211       1247898888877665555566666


Q ss_pred             HHHHHHcCC
Q 020160          312 NLEAFFSNK  320 (330)
Q Consensus       312 nl~~~~~g~  320 (330)
                      .-++++.+.
T Consensus       287 aAKR~r~es  295 (935)
T KOG4230|consen  287 AAKRQREES  295 (935)
T ss_pred             HHHHHHHhc
Confidence            666666543

>PRK08324 short chain dehydrogenase; Validated

Probab=91.56  E-value=0.3  Score=51.45  Aligned_cols=39  Identities=38%  Similarity=0.600  Sum_probs=34.7

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ..+.|+++.|.| .|.||+.+|+.|...|++|+..+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            457899999999 599999999999999999999888753

>PRK08374 homoserine dehydrogenase; Provisional

Probab=91.54  E-value=0.95  Score=43.61  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             ceEEEEecChHHHHHHHHHHh--------CC--CEEEEE-CCCCCC--CCCC---------------C-C-------CCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--------FG--CCVSYN-SRNKKP--SVTY---------------P-F-------YPD  202 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--------~G--~~V~~~-~~~~~~--~~~~---------------~-~-------~~~  202 (330)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.+. +++...  ..+.               . +       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999998865        56  565543 332111  0010               0 0       116


Q ss_pred             HHHHh--hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce-EEEEecCCCCCC
Q 020160          203 VCELA--ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGEIG-GAGLDVFENEPD  277 (330)
Q Consensus       203 l~ell--~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~i~-ga~lDV~~~EP~  277 (330)
                      +++++  ..+|+|+-+.+.. ...    .-..+.++.|.-+|-...|.+- ..++|.+..+++... .+.-.|...-|.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            67877  4799998776432 222    2233445667666655554332 455666555544332 233445555563

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=91.52  E-value=0.59  Score=45.48  Aligned_cols=35  Identities=43%  Similarity=0.641  Sum_probs=31.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58899999999999999999999999988876543

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.50  E-value=0.76  Score=44.44  Aligned_cols=80  Identities=14%  Similarity=0.177  Sum_probs=49.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCC-C--CC----C----------C---C-CCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKP-S--VT----Y----------P---F-YPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~--~~----~----------~---~-~~~l~ell~~aDvV~l  215 (330)
                      .+|+|+| .|.+|+.+++.|..+. +++.++.++... .  ..    .          .   . ..+.+ .+.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence            6899998 8999999999998764 477766222211 1  00    1          0   0 01333 3478999999


Q ss_pred             eccCCccccccccHHHHhcC-CCCcEEEEcC
Q 020160          216 CCALTDQTHHLINKQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       216 ~~P~t~~t~~li~~~~l~~m-k~gailIN~~  245 (330)
                      ++|....      .+..+.+ +.|..+|+.+
T Consensus        83 a~p~~~s------~~~~~~~~~~G~~vIDls  107 (349)
T PRK08664         83 ALPSDVA------GEVEEEFAKAGKPVFSNA  107 (349)
T ss_pred             eCChhHH------HHHHHHHHHCCCEEEECC
Confidence            9987533      2222322 3567666665

>PRK06153 hypothetical protein; Provisional

Probab=91.20  E-value=0.25  Score=48.34  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSR  189 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~  189 (330)
                      .|++++|+|||+|.+|..++..|...|. +++.+|.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            6899999999999999999999999997 6777664

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.18  E-value=0.36  Score=47.93  Aligned_cols=105  Identities=16%  Similarity=0.102  Sum_probs=63.8

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCC--CCHHHHhhcCCEEEEeccCCccccc--
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFY--PDVCELAANSDVLIICCALTDQTHH--  225 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~ell~~aDvV~l~~P~t~~t~~--  225 (330)
                      +.++++.|+|+|..|.+.++.|+..|.+|.++|.......      +....  ....+.++..|+|+. -|.-+....  
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence            5688999999999999999999999999999996543210      11111  112244567886655 443332221  


Q ss_pred             ---------cccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          226 ---------LINK-QVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       226 ---------li~~-~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                               ++.+ +.+.. ++...+-|--+.|+---..-|...|+.
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                     2222 23333 232234454456877777777777764

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=91.11  E-value=2  Score=35.90  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=72.2

Q ss_pred             CCceEEEEecC----hHHHHHHHHHHhCCCEEEEECCCCC--CCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          157 GGKRVGIVGLG----SIGSEVAKRLEAFGCCVSYNSRNKK--PSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       157 ~g~~vgIiG~G----~IG~~~A~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .-|||++||+.    +-+..+++.|...|++|+-+++...  ...|...+.||.|+-..-|+|-+--|.. ....+. .+
T Consensus        15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e-~~~~i~-~e   92 (140)
T COG1832          15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSE-AAPEVA-RE   92 (140)
T ss_pred             hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChh-hhHHHH-HH
Confidence            47899999985    5688999999999999998888444  4456667889999999999999887643 333332 33


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .++ +....++...   ++.++++-..+-..|
T Consensus        93 al~-~~~kv~W~Ql---Gi~n~ea~~~~~~aG  120 (140)
T COG1832          93 ALE-KGAKVVWLQL---GIRNEEAAEKARDAG  120 (140)
T ss_pred             HHh-hCCCeEEEec---CcCCHHHHHHHHHhC
Confidence            433 3466777765   567777655554444

>PRK08265 short chain dehydrogenase; Provisional

Probab=91.03  E-value=0.66  Score=42.32  Aligned_cols=38  Identities=32%  Similarity=0.331  Sum_probs=33.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .++|+++.|.|. |.||+++|+.|...|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999996 99999999999999999999888653

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.02  E-value=0.37  Score=42.65  Aligned_cols=38  Identities=37%  Similarity=0.458  Sum_probs=33.7

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+.|+++.|.|. |.||+.+++.+...|++|+..+|++.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            477999999995 99999999999999999999988654

>PRK08264 short chain dehydrogenase; Validated

Probab=91.00  E-value=0.48  Score=42.22  Aligned_cols=39  Identities=28%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      ++.++++.|.| -|.||+.+|+.|...|+ +|+..+|+.+.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            46789999999 59999999999999999 99988886543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.00  E-value=0.5  Score=45.64  Aligned_cols=85  Identities=28%  Similarity=0.333  Sum_probs=57.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CCCC--C--C-C----HHHHh--hcCCEEEEeccC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TYPF--Y--P-D----VCELA--ANSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~~~--~--~-~----l~ell--~~aDvV~l~~P~  219 (330)
                      +.++.|+|.|.||...++.++.+|. +|++.|+++.+..      +...  .  . .    ..++.  ..+|+++-|.- 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            3399999999999999999999997 6777787765321      1111  0  1 1    11222  24899998876 


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      ++.+  +  .+.++..+++..++.+|-.
T Consensus       248 ~~~~--~--~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         248 SPPA--L--DQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CHHH--H--HHHHHHhcCCCEEEEEecc
Confidence            2221  2  4677888999888888754

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.99  E-value=0.35  Score=44.15  Aligned_cols=120  Identities=23%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CCC-----------------C-----C
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SVT-----------------Y-----P  198 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~-----~  198 (330)
                      .|++++|.|+|+|.+|..+|+.|...|. +++.+|...-.             ..+                 .     .
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            4789999999999999999999998887 67776643210             000                 0     0


Q ss_pred             -C--CCCHHHHh-hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCH-----------------HHHHH
Q 020160          199 -F--YPDVCELA-ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDE-----------------KEMVG  257 (330)
Q Consensus       199 -~--~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~-----------------~aL~~  257 (330)
                       .  ..+.++++ .+.|+|+.|+- +...+..+++...+ . .=.++...|-|+-.|.                 ..+.+
T Consensus        88 ~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~-~-~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~  164 (231)
T cd00755          88 EFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRK-R-KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK  164 (231)
T ss_pred             eecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHH-h-CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence             0  12345565 36899988864 33334333332222 1 1234545555554442                 23667


Q ss_pred             HHHcCCceEEEEecCCCCCC
Q 020160          258 CLLRGEIGGAGLDVFENEPD  277 (330)
Q Consensus       258 aL~~g~i~ga~lDV~~~EP~  277 (330)
                      .|++..+..-.-=||..|+.
T Consensus       165 ~Lrk~~~~~~~~~v~S~E~~  184 (231)
T cd00755         165 RLRKRGIFFGVPVVYSTEPP  184 (231)
T ss_pred             HHHHcCCCCCeEEEeCCCCC
Confidence            78877775223446778864

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=90.94  E-value=0.54  Score=44.97  Aligned_cols=37  Identities=30%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++||++.|.|. |-||+.++++|...|++|++.+++..
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            46899999995 99999999999999999998887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.84  E-value=0.36  Score=48.09  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCC--CCHHHHhhcCCEEEEeccCCcccc--
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFY--PDVCELAANSDVLIICCALTDQTH--  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~ell~~aDvV~l~~P~t~~t~--  224 (330)
                      .-+++|+|+|.+|.++|+.|+..|++|.++|.......         +....  ..-.+.+.++|+|+.. |.-+.+.  
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s-p~i~~~~p~   84 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS-PGLALDTPA   84 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC-CCCCCCCHH
Confidence            45899999999999999999999999999997543210         11111  1113456789988765 3222211  


Q ss_pred             ---------ccccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          225 ---------HLINK-QVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       225 ---------~li~~-~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                               .++++ +.+.. ++...+-|--+.|+---..-+...|+.
T Consensus        85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence                     12322 23322 333345555566887777777777765

>PRK05865 hypothetical protein; Provisional

Probab=90.80  E-value=0.96  Score=48.89  Aligned_cols=90  Identities=22%  Similarity=0.303  Sum_probs=57.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--CC-------CCCCCHHHHhhcCCEEEEeccCCcccc--cc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--TY-------PFYPDVCELAANSDVLIICCALTDQTH--HL  226 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~-------~~~~~l~ell~~aDvV~l~~P~t~~t~--~l  226 (330)
                      |+|.|.|. |.||+.+++.|...|++|++.+++.....  ..       ....++.++++.+|+|+.+........  ++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            47899995 99999999999999999998887642211  11       112345667889998887764322100  01


Q ss_pred             c-cHHHHhcCCCC--cEEEEcCCCc
Q 020160          227 I-NKQVLLALGKK--GVIINVGRGA  248 (330)
Q Consensus       227 i-~~~~l~~mk~g--ailIN~~rg~  248 (330)
                      . ....++.|+..  ..+|.+|...
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            1 12234445432  3688888765

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.79  E-value=0.33  Score=48.00  Aligned_cols=63  Identities=29%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CC-------CCCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TY-------PFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~-------~~~~~l~ell~~aDvV~l~~  217 (330)
                      +++||++.|.|. |.||+++|+.+...|++|+..+++.....        ..       ....++.+.+.+.|+++.+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            578999999996 89999999999999999998877543210        00       11123455678899998765

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=90.78  E-value=0.68  Score=44.27  Aligned_cols=31  Identities=29%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSR  189 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~  189 (330)
                      .+|||=|||+||+.+++.+...+  |+|.+.+.
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            47999999999999999998775  89987765

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.76  E-value=0.64  Score=43.99  Aligned_cols=85  Identities=28%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCCC---C--CCHH---HHhh--cCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPS-----VTYPF---Y--PDVC---ELAA--NSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~-----~~~~~---~--~~l~---ell~--~aDvV~l~~P~t  220 (330)
                      .|.++.|+|.|.+|...++.++.+|.+ |++.+++..+.     .+...   .  .+.+   ++..  ..|+|+-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            389999999999999999999999998 88887654321     11110   0  0111   2222  367666554321


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                       ..   + ...++.+++++.++.+|.
T Consensus       243 -~~---~-~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         243 -AA---R-RLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             -HH---H-HHHHHHhhcCCEEEEEcC
Confidence             11   1 344666777777777654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.71  E-value=0.39  Score=43.86  Aligned_cols=64  Identities=28%  Similarity=0.343  Sum_probs=46.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----C--------CCCCCCHHHHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----T--------YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~--------~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+.|+++.|.|. |.||+++|+.+...|++|++.+++.....     .        .....++.+.+...|+++.+.-
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            478999999996 78999999999999999988877651110     0        0011234456677899988763

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.70  E-value=0.96  Score=42.43  Aligned_cols=85  Identities=21%  Similarity=0.262  Sum_probs=55.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC---CCC--CH-HHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP---FYP--DV-CELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~---~~~--~l-~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .|.++.|+|.|.+|+.+++.++.+|.+|++.+++....     .+..   ...  +. .......|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            47899999999999999999999999998887665321     0110   000  11 111234787776653221    


Q ss_pred             cccHHHHhcCCCCcEEEEcCC
Q 020160          226 LINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~r  246 (330)
                       ...+.+..|++++.+|+++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             12456778888888888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=90.69  E-value=0.56  Score=44.36  Aligned_cols=60  Identities=23%  Similarity=0.249  Sum_probs=47.2

Q ss_pred             cCCceEEEEe---cChHHHHHHHHHHhCCCEEEEECCCCCCC----------CC-C-CCCCCHHHHhhcCCEEEE
Q 020160          156 LGGKRVGIVG---LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VT-Y-PFYPDVCELAANSDVLII  215 (330)
Q Consensus       156 l~g~~vgIiG---~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~-~-~~~~~l~ell~~aDvV~l  215 (330)
                      +.|.+|+|+|   .|+.-++.++.|+.||.+|..+.+..-..          .+ . ......+|.+.++|++.+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~  230 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM  230 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence            7899999999   89999999999999999999988753222          01 1 224456669999999865

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.64  E-value=0.75  Score=42.01  Aligned_cols=86  Identities=26%  Similarity=0.289  Sum_probs=56.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCC-----CC-CCC-CCCHHHH--hhcCCEEEEeccCCcccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPS-----VT-YPF-YPDVCEL--AANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~-----~~-~~~-~~~l~el--l~~aDvV~l~~P~t~~t~~l  226 (330)
                      .|.++.|.|.|.+|..+++.++.+|.+ |++.+++.+..     .+ ... ....++.  -...|+++.++....   .+
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~---~~  173 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS---AL  173 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH---HH
Confidence            478999999999999999999999998 88877654321     11 000 0011111  124788876654321   12


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 020160          227 INKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg  247 (330)
                        ...++.+++++.++++|-.
T Consensus       174 --~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         174 --ETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             --HHHHHHhcCCcEEEEEecc
Confidence              4567889999999988754

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK14852 hypothetical protein; Provisional

Probab=90.59  E-value=0.53  Score=51.17  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=87.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CC-----------------CC------
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SV-----------------TY------  197 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~-----------------~~------  197 (330)
                      .|++++|+|||+|.+|..+|+.|...|. ++...|...-.             ..                 ..      
T Consensus       329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            5899999999999999999999999887 55555432110             00                 00      


Q ss_pred             --CCCCCHHHHhhcCCEEEEeccCCc-cccccccHHHHhcCCCCcEEEEcCCC------------cccCHHHHHH-----
Q 020160          198 --PFYPDVCELAANSDVLIICCALTD-QTHHLINKQVLLALGKKGVIINVGRG------------AIIDEKEMVG-----  257 (330)
Q Consensus       198 --~~~~~l~ell~~aDvV~l~~P~t~-~t~~li~~~~l~~mk~gailIN~~rg------------~~vd~~aL~~-----  257 (330)
                        ....+++++++.+|+|+-++-.-. +.+..+.....   +.+.-+|..+-.            +..+++- .+     
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~-f~~~~~~  484 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCALLVFMPGGMNFDSY-FGIDDDT  484 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeEEEEcCCCCCHHHh-CCCCCCC
Confidence              012356778889999988774311 22233333322   233444444321            1111100 00     


Q ss_pred             HHHcCCceEEEEecCCCCCCCCc-ccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 020160          258 CLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK  320 (330)
Q Consensus       258 aL~~g~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~  320 (330)
                      -..+|-++ .++   ...|.+.. ..++..+|-+.=+.+-++.-+-.-.+-.+....++++-|+
T Consensus       485 p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~  544 (989)
T PRK14852        485 PPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHR  544 (989)
T ss_pred             chHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCC
Confidence            00011111 111   12222111 2335566766667777777777888888888899988887

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=90.59  E-value=0.83  Score=44.50  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ..++|+|||-|..|+.+++.++.+|++|+.++..+.
T Consensus        11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~   46 (395)
T PRK09288         11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN   46 (395)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            356899999999999999999999999988887654

>PRK06196 oxidoreductase; Provisional

Probab=90.59  E-value=0.4  Score=45.24  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=33.6

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999996 88999999999999999998888643

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.58  E-value=0.42  Score=42.78  Aligned_cols=36  Identities=25%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.|+++.|+|. |.||+.+|+.+...|++|+..+++.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67999999997 9999999999999999999888765

>PRK06523 short chain dehydrogenase; Provisional

Probab=90.45  E-value=0.49  Score=42.88  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .++.||++.|.|. |.||+.+|+.|...|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4578999999995 89999999999999999998887654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=90.43  E-value=1.1  Score=41.09  Aligned_cols=81  Identities=25%  Similarity=0.346  Sum_probs=56.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCC--C-CCCHHHHhh---cCCEEEEeccCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYP--F-YPDVCELAA---NSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~--~-~~~l~ell~---~aDvV~l~~P~t  220 (330)
                      +.|++|.=||+|  |..+++-+...|.+|++.|-+.+...         +..  + ..+.+|+..   +.|+|+++    
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cm----  131 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCM----  131 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEh----
Confidence            789999999988  46899999999999999998775411         111  2 346677765   68988763    


Q ss_pred             cccccccc-----HHHHhcCCCCcEEE
Q 020160          221 DQTHHLIN-----KQVLLALGKKGVII  242 (330)
Q Consensus       221 ~~t~~li~-----~~~l~~mk~gailI  242 (330)
                      +-.+|+=+     ....+.+|||++++
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf  158 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILF  158 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEE
Confidence            22333333     34778899987655

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=90.35  E-value=0.31  Score=41.50  Aligned_cols=30  Identities=30%  Similarity=0.306  Sum_probs=24.6

Q ss_pred             eEEEEecChHHHHHHHHHH-hCCCEEEEECC
Q 020160          160 RVGIVGLGSIGSEVAKRLE-AFGCCVSYNSR  189 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~  189 (330)
                      +|||-|||+||+.+++.+. .-.++|.+.+.
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd   32 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAIND   32 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEec
Confidence            7999999999999999987 44567766543

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=90.30  E-value=0.41  Score=47.39  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----------CCCCCC--CCHHHHhhcCCEEEEeccCCcccc--
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----------VTYPFY--PDVCELAANSDVLIICCALTDQTH--  224 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~~~~~--~~l~ell~~aDvV~l~~P~t~~t~--  224 (330)
                      ++.|||+|.+|.++|+.|+..|++|.++|......           .+....  .+ .+.+..+|+|+..--..+...  
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            47899999999999999999999999999754321           121111  12 345678998877532222111  


Q ss_pred             --------ccccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          225 --------HLINK-QVL-LALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       225 --------~li~~-~~l-~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                              .++++ +.+ ..++...+-|--+.|+---..-+...|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                    12322 222 3334345556666788877777778887643

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.30  E-value=0.75  Score=44.11  Aligned_cols=36  Identities=17%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~  192 (330)
                      .|++|.|.|.|.+|...++.++.+|.+ |++.+++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~  212 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR  212 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            488999999999999999999999995 888876543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=90.28  E-value=1.1  Score=42.23  Aligned_cols=62  Identities=23%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------------CCCCCCCHHHHhhcCCEEEE
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~ell~~aDvV~l  215 (330)
                      .|+++.|.| .|-||+.+++.|...|++|.+..|+.....                    ......+++++++.+|+|+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            589999999 699999999999999999986655432100                    01112356777888998877


Q ss_pred             ecc
Q 020160          216 CCA  218 (330)
Q Consensus       216 ~~P  218 (330)
                      +..
T Consensus        84 ~A~   86 (322)
T PLN02986         84 TAS   86 (322)
T ss_pred             eCC
Confidence            653

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.26  E-value=0.64  Score=44.69  Aligned_cols=85  Identities=29%  Similarity=0.324  Sum_probs=55.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC---CCC---HHHHhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF---YPD---VCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .|.++.|.|.|.+|..+++.++..|.+|+..+++.+..      .+...   ..+   +.++....|+++-++.....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            57899999999999999999999999987776544221      12210   111   22223346888776643211  


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                       +  ...++.+++++.++.+|.
T Consensus       258 -~--~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 -L--EPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             -H--HHHHHHhccCCEEEEECC
Confidence             1  346677888888888874

>PRK07856 short chain dehydrogenase; Provisional

Probab=90.19  E-value=0.5  Score=42.68  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=33.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ++.||++.|.|. |.||+.+|+.|...|++|+..+++.
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467999999995 7899999999999999999888865

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=90.16  E-value=0.91  Score=43.74  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=47.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCC-CEEEEE-CCCCCC--CC----CC-----C-C-CC-----CH-HHHhhcCCEEEEe
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFG-CCVSYN-SRNKKP--SV----TY-----P-F-YP-----DV-CELAANSDVLIIC  216 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G-~~V~~~-~~~~~~--~~----~~-----~-~-~~-----~l-~ell~~aDvV~l~  216 (330)
                      .+|+|+|. |.+|+.+++.+.... +++.+. +.....  ..    ..     . . ..     ++ .+.+.++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999995 999999999998755 677654 332211  00    00     0 0 01     11 2345889999999


Q ss_pred             ccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          217 CALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       217 ~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      +|..-... +.  +.+  ++.|..+|+.|
T Consensus        81 ~p~~~s~~-~~--~~~--~~~G~~VIDls  104 (341)
T TIGR00978        81 LPSEVAEE-VE--PKL--AEAGKPVFSNA  104 (341)
T ss_pred             CCHHHHHH-HH--HHH--HHCCCEEEECC
Confidence            98663322 21  222  23566666654

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.13  E-value=0.46  Score=44.35  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=31.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      .|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            5899999999999999999999999994 67776643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.12  E-value=0.53  Score=42.58  Aligned_cols=38  Identities=32%  Similarity=0.444  Sum_probs=33.7

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+.||++.|.|. |.||+.+|++|...|++|+..+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999995 99999999999999999998888643

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=90.11  E-value=0.74  Score=42.22  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             EEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCC-----C--CCCHHHHhhcCCEEEEecc
Q 020160          162 GIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-----F--YPDVCELAANSDVLIICCA  218 (330)
Q Consensus       162 gIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~-----~--~~~l~ell~~aDvV~l~~P  218 (330)
                      .|.| .|-||+.+++.|...|++|++.+|++.......     .  .....+.+.++|+|+.++.
T Consensus         2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            4666 699999999999999999999998765432110     0  1244556788998887764

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=90.07  E-value=1.6  Score=42.84  Aligned_cols=97  Identities=19%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC-E------EEEE--CCCCCCCC---------------CCCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC-C------VSYN--SRNKKPSV---------------TYPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~-~------V~~~--~~~~~~~~---------------~~~~~~~l~ell~~aDvV  213 (330)
                      -+|+|||. |.+|..+|-.+...|. .      +..+  |...+...               ......+-.+.+++||+|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV  124 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA  124 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence            59999999 9999999999876554 2      3334  55544321               001012445789999999


Q ss_pred             EEeccC--Cc-cccc-cc--c----HH---HHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 020160          214 IICCAL--TD-QTHH-LI--N----KQ---VLLA-LGKKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       214 ~l~~P~--t~-~t~~-li--~----~~---~l~~-mk~gailIN~~rg~~vd~~aL~~  257 (330)
                      ++..-.  .+ ++|. ++  |    ++   .+.. -+|.+++|.++  ..+|.-+.+-
T Consensus       125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~  180 (387)
T TIGR01757       125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIA  180 (387)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHH
Confidence            997533  22 1221 11  1    11   1222 44788888886  5555555443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.07  E-value=0.32  Score=46.23  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=34.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      .|.|++|.|+|.+|.++++-++++|. ++++.|.++++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            58999999999999999999999998 89999988764

>PLN02206 UDP-glucuronate decarboxylase

Probab=90.05  E-value=0.75  Score=45.98  Aligned_cols=69  Identities=26%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             CCCCccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCC--CCCCHHHHhhcCCEEEE
Q 020160          149 EFPLGSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYP--FYPDVCELAANSDVLII  215 (330)
Q Consensus       149 ~~~~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~--~~~~l~ell~~aDvV~l  215 (330)
                      ..++|..-++++|.|.| .|-||+.+++.|...|.+|++.++.....          ....  ..+-++..+.++|+|+-
T Consensus       110 ~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViH  189 (442)
T PLN02206        110 KIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYH  189 (442)
T ss_pred             cCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEE
Confidence            35677777889999999 59999999999999999999887542110          0011  11223445678998766


Q ss_pred             ec
Q 020160          216 CC  217 (330)
Q Consensus       216 ~~  217 (330)
                      +.
T Consensus       190 lA  191 (442)
T PLN02206        190 LA  191 (442)
T ss_pred             ee
Confidence            54

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.05  E-value=0.78  Score=44.27  Aligned_cols=85  Identities=20%  Similarity=0.243  Sum_probs=54.1

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC---C--CCHHH-Hh---h-cCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF---Y--PDVCE-LA---A-NSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~--~~l~e-ll---~-~aDvV~l~~P~t  220 (330)
                      .|.+|.|.|.|.+|...++.++..|+ +|++.++++.+.     .+...   .  .++.+ +.   . ..|+|+-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            47899999999999999999999999 588887665331     12110   1  11111 11   1 367777665322


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                       .+  +  ...++.+++++.++.++-
T Consensus       271 -~~--~--~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 -PA--L--ETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             -HH--H--HHHHHHHhcCCEEEEEcc
Confidence             11  1  345667788888887764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=90.04  E-value=1.1  Score=43.32  Aligned_cols=80  Identities=10%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC---EEEEECCCCCCC----C-CCC-CCC--CHHHHhhcCCEEEEeccCCcccccc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC---CVSYNSRNKKPS----V-TYP-FYP--DVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~~~~~~~~----~-~~~-~~~--~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      .+|+|+|. |.+|+++.+.|...++   ++.+........    . +.. ...  +..+ ++++|++++++|.. .... 
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~-   81 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRS-   81 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHH-
Confidence            58999995 9999999999995443   333332211111    0 100 011  2223 58999999999943 2222 


Q ss_pred             ccHHHHhcC-CCCcEEEEcC
Q 020160          227 INKQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       227 i~~~~l~~m-k~gailIN~~  245 (330)
                          ....+ +.|..+||.|
T Consensus        82 ----~v~~~~~~G~~VIDlS   97 (336)
T PRK05671         82 ----FAEKARAAGCSVIDLS   97 (336)
T ss_pred             ----HHHHHHHCCCeEEECc
Confidence                33322 4688899987

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=89.93  E-value=8.2  Score=39.84  Aligned_cols=187  Identities=19%  Similarity=0.142  Sum_probs=112.7

Q ss_pred             cCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHh--
Q 020160          102 RGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA--  179 (330)
Q Consensus       102 ~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--  179 (330)
                      ..|.+.|.--   .-+|-.+++-+|+.+|-.                    ++.|...++.|+|.|..|-.+|+.+..  
T Consensus       288 ~~i~~FnDDi---QGTaaV~lAgll~A~r~~--------------------g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        288 TTHLCFNDDI---QGTAAVALAGLLAALRAT--------------------GGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             cCCCEecccc---chHHHHHHHHHHHHHHHh--------------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            4677777532   235556777777777632                    456889999999999999999999876  


Q ss_pred             ---CCC-------EEEEECCCCC-----CC-C---------CCCCCCCHHHHhhc--CCEEEEeccCCccccccccHHHH
Q 020160          180 ---FGC-------CVSYNSRNKK-----PS-V---------TYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       180 ---~G~-------~V~~~~~~~~-----~~-~---------~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                         .|.       ++..+|+..-     .. .         ......+|.|+++.  .|+++=+-    ..-+.|+++.+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi  420 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL  420 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence               466       6777776431     11 0         11123589999999  89887542    22368999999


Q ss_pred             hcCC---CCcEEEEcCCCcccCHHHHHHHHH--cCC-ceEEEEecCCCCCCCC-c---ccccCCceEEcCCCCCCCH---
Q 020160          233 LALG---KKGVIINVGRGAIIDEKEMVGCLL--RGE-IGGAGLDVFENEPDVP-E---QLFALDNVVLSPHSAVFTP---  299 (330)
Q Consensus       233 ~~mk---~gailIN~~rg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~~~-~---~L~~~~nvilTPHia~~t~---  299 (330)
                      +.|.   +.+++.=.|...---|-.-.++.+  +|+ |.+.|.   .-+|..- .   .-=+..|+.+=|=++-..-   
T Consensus       421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS---Pf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~  497 (581)
T PLN03129        421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS---PFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSG  497 (581)
T ss_pred             HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC---CCCCeeeCCeeecCccccceeeccchhhHHHhcC
Confidence            9995   788988888765333322233333  355 433321   1111100 1   1224568888887654221   


Q ss_pred             --HHHHHHHHHHHHHHHHHHc
Q 020160          300 --ESFKDVCELAVANLEAFFS  318 (330)
Q Consensus       300 --~~~~~~~~~~~~nl~~~~~  318 (330)
                        .--+.|.-.+++-|-++..
T Consensus       498 a~~Itd~m~~aAA~aLA~~v~  518 (581)
T PLN03129        498 AIRVTDDMLLAAAEALAAQVT  518 (581)
T ss_pred             CcCCCHHHHHHHHHHHHHhCC
Confidence              1234555566666655553

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=89.93  E-value=0.73  Score=41.93  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+.||++.|.| -|.||+++|+.|...|++|+..+++...
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD   45 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            47899999999 5899999999999999999988876543

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=89.84  E-value=0.61  Score=45.00  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=48.8

Q ss_pred             eEEEEe-cChHHHHHHHHHHhCCCEE---EEECCCCCCCC-----CCC-CCC--CHHHHhhcCCEEEEeccCCccccccc
Q 020160          160 RVGIVG-LGSIGSEVAKRLEAFGCCV---SYNSRNKKPSV-----TYP-FYP--DVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       160 ~vgIiG-~G~IG~~~A~~l~~~G~~V---~~~~~~~~~~~-----~~~-~~~--~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +|+||| -|.+|+.+++.|...|+.+   .+..+......     +.. ...  +. +.+.++|+++.++|.... ..+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s-~~~a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVS-KEFA   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHH-HHHH
Confidence            589999 8999999999998866643   33333322111     110 011  22 345899999999986533 2221


Q ss_pred             cHHHHhcCCCCcEEEEcC
Q 020160          228 NKQVLLALGKKGVIINVG  245 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~  245 (330)
                       .+   ..+.|+++|+.+
T Consensus        79 -~~---~~~~G~~VID~s   92 (339)
T TIGR01296        79 -PK---AAKCGAIVIDNT   92 (339)
T ss_pred             -HH---HHHCCCEEEECC
Confidence             11   235688888877

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.77  E-value=0.49  Score=40.16  Aligned_cols=29  Identities=34%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYN  187 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~  187 (330)
                      .+|||+|+|+||+.+++.+.. -++++.+.
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai   30 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAI   30 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEe
Confidence            379999999999999998874 56777654

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=89.73  E-value=0.6  Score=41.91  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            68999999997 8999999999999999999888754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-78
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		5e-49
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		3e-43
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		6e-35
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-33
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-31
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-30
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-29
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		4e-29
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		3e-28
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		7e-28
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		3e-27
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		3e-27
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-26
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-26
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		6e-26
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		7e-26
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		9e-26
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-25
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-23
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-23
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-23
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-22
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		4e-22
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		4e-22
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		4e-22
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		7e-22
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		3e-21
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		3e-20
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		7e-20
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		8e-20
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		1e-19
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-19
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		1e-17
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		4e-17
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		4e-17
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		8e-17
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		3e-16
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		4e-16
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		5e-16
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-16
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-16
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		1e-15
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-15
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		3e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		1e-14
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		2e-14
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		4e-14
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		1e-13
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		2e-13
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		3e-13
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		4e-13
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		2e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-11
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		7e-11
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		2e-10
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		2e-09
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		6e-09
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		2e-04

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  288 bits (738), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/293 (48%), Positives = 203/293 (69%), Gaps = 2/293 (0%)
Query: 33  SNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN 92
             +F+  + Y +     +FL L A S++A+  ++ A   AE++  LP++ +V + S GL+
Sbjct: 41  DKRFKLFR-YWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLD 99
Query: 93  HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL 152
            +D+++C  +GV + N  +V ++DVAD A+GL++ VLR++   D +VR+G W    +F L
Sbjct: 100 KVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF-GDFKL 158
Query: 153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV 212
            +K  GKRVGI+GLG IG  VA+R EAF C +SY SR+KKP+  Y +Y  V ELA+NSD+
Sbjct: 159 TTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDI 218
Query: 213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVF 272
           L++ C LT +T H+IN++V+ ALG KGV+IN+GRG  +DE E+V  L+ G +GGAGLDVF
Sbjct: 219 LVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF 278
Query: 273 ENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           E EP+VPE+LF L+NVVL PH    T E+ K + +L V NLEA FS KPLLTP
Sbjct: 279 EREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTP 331

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 154/280 (55%), Gaps = 10/280 (3%)
Query: 41  AYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECR 100
           A E+ALP          S++A+ +  GA ++ E    LP + ++     G + +D+   R
Sbjct: 64  ALEAALP----------SIRAVATGGGAGLSNEWXEKLPSLGIIAINGVGTDKVDLARAR 113
Query: 101 RRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKR 160
           RR + +     V ++DVAD  + L + VLR++   D  VR+G W    + PLG    GKR
Sbjct: 114 RRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKR 173
Query: 161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALT 220
           +G++GLG IG  +A R EAFG  V Y +R+    V +  +    +LA +SDVL +C A +
Sbjct: 174 IGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS 233
Query: 221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE 280
             T ++++  +L ALG +G+++NV RG ++DE  ++  L  G I GAGLDVF NEP +  
Sbjct: 234 AATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRS 293
Query: 281 QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK 320
           +     N VL PH    T E+     +L +ANL A F+ +
Sbjct: 294 EFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAAHFAGE 333

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 155/261 (59%), Gaps = 9/261 (3%)
Query: 61  AIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADY 120
            I  S    +T E+L     ++++   SAG ++ID+ E  +RG+ +     + SE VA++
Sbjct: 45  GIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEF 104
Query: 121 ALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSK----LGGKRVGIVGLGSIGSEVAKR 176
            +GL+I+++RK+  AD F+R+G W  +A+   G K    L GK+VGI+G+G+IG  +A+R
Sbjct: 105 TVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARR 164
Query: 177 LEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233
           L  FG  + Y SR++K +V       Y D+ EL   SD++I+   LT  T+H+IN++ + 
Sbjct: 165 LIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVK 224
Query: 234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALD-NVVLSP 292
            L  K  ++N+GRGA++DEK +   + +G++ G   DVFE EP    +LF  +   VL+P
Sbjct: 225 KLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTP 283
Query: 293 HSAVFTPESFKDVCELAVANL 313
           H A    E+ +DV   AV NL
Sbjct: 284 HYAGLALEAQEDVGFRAVENL 304

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 164/315 (52%), Gaps = 16/315 (5%)
Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P+V + R+    G  ML ++F        +   E  +P  E L      V A+ +     
Sbjct: 3   PKVFITREIPEVGIKMLEDEFEVE-----VWGDEKEIP-REILLKKVKEVDALVTMLSER 56
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +  E+    P++R+V   + G ++ID+ E  +RG+ + N  +V ++  AD A  LL+   
Sbjct: 57  IDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATA 116
Query: 130 RKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R +   D FVR G W       + ++ LG  + GK +GI+GLG IG  +AKR + F   +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
            Y SR +K  V       +  + +L   SD +++   LT +T+HLIN++ L  + K  ++
Sbjct: 177 LYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           IN+ RG ++D   +V  L  G I GAGLDVFE EP   E+LF LDNVVL+PH    +  +
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 302 FKDVCELAVANLEAF 316
            + + EL   NL AF
Sbjct: 297 REGMAELVAKNLIAF 311

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 9/282 (3%)
Query: 43  ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
           E  +P  E L      V A+ +     +  E+    P++R+V   + G ++ID+ E  +R
Sbjct: 31  EKEIP-REILLKKVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP-----INAEFPLGSKLG 157
           G+ + N  +V ++  AD A  LL+   R +   D FVR G W       + ++ LG  + 
Sbjct: 90  GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVY 149
Query: 158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLI 214
           GK +GI+GLG IG  +AKR + F   + Y SR +K  V       +  + +L   SD ++
Sbjct: 150 GKTIGIIGLGRIGQAIAKRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVV 209
Query: 215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN 274
           +   LT +T+HLIN++ L    K  ++IN+ RG ++D   +V  L  G I GAGLDVFE 
Sbjct: 210 LAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE 269
Query: 275 EPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF 316
           EP   E+LF LDNVVL+PH    +  + +   EL   NL AF
Sbjct: 270 EPYYNEELFKLDNVVLTPHIGSASFGAREGXAELVAKNLIAF 311

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/261 (35%), Positives = 141/261 (54%), Gaps = 10/261 (3%)
Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVAL 106
           P  + L      V+AI   +   VT  ++   P+++++     GL++IDV   + +G+ +
Sbjct: 33  PDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEV 92
Query: 107 ANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGL 166
            NA    S  VA+ A+GL+  V RK++ AD  +R+G+W    +  +G +L GK +GI+G 
Sbjct: 93  VNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWA--KKEAMGIELEGKTIGIIGF 150
Query: 167 GSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ 222
           G IG +VAK   A G  +     Y +  +   V   F  D+  L   SDV+ I   L + 
Sbjct: 151 GRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVES 209
Query: 223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ- 281
           T+HLIN++ L  + K  ++IN  RG ++D   +V  L  G I GAGLDVFE EP +P+  
Sbjct: 210 TYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEP-LPKDH 268
Query: 282 -LFALDNVVLSPHSAVFTPES 301
            L   DNVVL+PH    T E+
Sbjct: 269 PLTKFDNVVLTPHIGASTVEA 289

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 132/266 (49%), Gaps = 5/266 (1%)
Query: 56  AHSVKAIFSSAGAPVTAEILR-LLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFS 114
           AH  + +F +A   +TAE++R L P ++ +   S G +HID    R  G+ + +  +V S
Sbjct: 69  AHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLS 128
Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEV 173
           +  A+ A  L+++  R+   AD  VR G WP       LG  L G+R+GI G G IG  +
Sbjct: 129 DACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAI 188
Query: 174 AKRLEAFGCCVSYNSRNKKPSVTYP--FYPDVCE-LAANSDVLIICCALTDQTHHLINKQ 230
           A R   FG  + Y++R +          Y D  + L   SD+ +I      +    ++  
Sbjct: 189 ATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHD 248
Query: 231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL 290
            +  + +  V+IN+ RG +I++  ++  L    +  AGLDVF NEP +  +  +LDN+ L
Sbjct: 249 RIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFL 308
Query: 291 SPHSAVFTPESFKDVCELAVANLEAF 316
           +PH    T E+      L +  +EA 
Sbjct: 309 TPHIGSATHETRDAXGWLLIQGIEAL 334

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/253 (35%), Positives = 144/253 (56%), Gaps = 5/253 (1%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           + AE++     ++++   S G++H+D+   R RG+ + +   V +E  AD  L LL+ V 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 130 RKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
           R++     + R GLW   + E  LG  L G  +G+VG+G IG  VAKR  AFG  V Y++
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHA 174
Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
           R  KP + YPF   + EL   +DV+ +   LT +TH L+N++ L A+ +  +++N  RGA
Sbjct: 175 RTPKP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGA 232
Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCE 307
           ++D + +V   LRG + GAGLDV + EP  P   L+AL N V++PH       + + + E
Sbjct: 233 LVDTEALVEA-LRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE 291
Query: 308 LAVANLEAFFSNK 320
           +AV NL A    +
Sbjct: 292 VAVENLLAVLEGR 304

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 23/278 (8%)
Query: 54  LHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVF 113
           L  H  K I  +AGA            ++++   S G++H+ + E ++RG+ +    +V 
Sbjct: 61  LSDHVDKRILDAAGA-----------NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVL 109
Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL---GSKLGGKRVGIVGLGSIG 170
           ++  A+ A+ LL+   R+L  A   V+ G W   +  PL   G  L    VGI+GLG IG
Sbjct: 110 TDTTAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIG 167
Query: 171 SEVAKRLEAFGCC-VSYNSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHL 226
             +A+RL+ FG     Y  R  +P     F  +     ELAA SD +++ C+LT  T  L
Sbjct: 168 QAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGL 227
Query: 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFA 284
            NK     + +  V IN+ RG ++++ ++   L  G+I  AGLDV   EP +P    L  
Sbjct: 228 CNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP-LPTNHPLLT 286
Query: 285 LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
           L N V+ PH    T  +   +  LA  NL A    +P+
Sbjct: 287 LKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 21/276 (7%)
Query: 54  LHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVF 113
           L  H  K I  +AGA            ++++   S G++H+ + E ++RG+ +    +V 
Sbjct: 59  LSDHVDKRILDAAGA-----------NLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVL 107
Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL---GSKLGGKRVGIVGLGSIG 170
           ++  A+ A+ LL+   R+L  A   V+ G W   +  PL   G  L    VGI+GLG IG
Sbjct: 108 TDTTAELAVSLLLTTCRRLPEAIEEVKNGGW--TSWKPLWLCGYGLTQSTVGIIGLGRIG 165
Query: 171 SEVAKRLEAFGCC-VSYNSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHL 226
             +A+RL+ FG     Y  R  +P     F  +     ELAA SD +++ C+LT  T  L
Sbjct: 166 QAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGL 225
Query: 227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFAL 285
            NK       +  V IN+ RG ++++ ++   L  G+I  AGLDV   EP      L  L
Sbjct: 226 CNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTL 285
Query: 286 DNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
            N V+ PH    T  +      LA  NL A    +P
Sbjct: 286 KNCVILPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 7/269 (2%)
Query: 56  AHSVKAIFSSAGAPVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFS 114
           A SV A+  +       E++  +PE ++ +   S G +HID+  C+ RG+ + NA +  +
Sbjct: 42  AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT 101
Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPL-GSKLGGKRVGIVGLGSIGSEV 173
              A+ A+ LL+   R+    +  +R   WP      L G KL  K +GI G GSIG  +
Sbjct: 102 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL 161
Query: 174 AKRLEAFGCCVSY-----NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228
           AKR + F   + Y      S + + S    F+  +  L + S    +    T +T +  N
Sbjct: 162 AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 221
Query: 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV 288
           K  + +L +  +++N  RG ++D + +V  L  G +  AG DVF  EP++ E  + L N 
Sbjct: 222 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT 281
Query: 289 VLSPHSAVFTPESFKDVCELAVANLEAFF 317
            L PH      ++ +D+   A   ++A F
Sbjct: 282 FLFPHIGSAATQAREDMAHQANDLIDALF 310

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 12/265 (4%)
Query: 43  ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
           +S L   E L       +A+ +     V A+ L+  PE+R++     G ++ DV  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
           GV L    ++ +   A+ A+GL + + R L AAD FVR G +        G+ L    VG
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
            +G+G+IG  +A RL+ +G  + Y++R    + T          C EL A+SD +++   
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
           L   T HL+N ++L  +    +++N  RG+++DE  ++  L RG++GG   DVFE E   
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
             D P+Q   +D  +L+  + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 12/265 (4%)
Query: 43  ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
           +S L   E L       +A+ +     V A+ L+  PE+R++     G ++ DV  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
           GV L    ++ +   A+ A+GL + + R L AAD FVR G +        G+ L    VG
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
            +G+G+IG  +A RL+ +G  + Y++R    + T          C EL A+SD +++   
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
           L   T HL+N ++L  +    +++N  RG+++DE  ++  L RG++GG   DVFE E   
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
             D P+Q   +D  +L+  + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 12/265 (4%)
Query: 43  ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
           +S L   E L       +A+ +     V A+ L+  PE+R++     G ++ DV  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
           GV L    ++ +   A+ A+GL + + R L AAD FVR G +        G+ L    VG
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
            +G+G+IG  +A RL+ +G  + Y+      + T          C EL A+SD +++   
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
           L   T HL+N ++L  +    +++N  RG+++DE  ++  L RG++GG   DVFE E   
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
             D P+Q   +D  +L+  + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 134/265 (50%), Gaps = 12/265 (4%)
Query: 43  ESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRR 102
           +S L   E L       +A+ +     V A+ L+  PE+R++     G ++ DV  C  R
Sbjct: 31  DSTLTREEILR-RCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTAR 89
Query: 103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVG 162
           GV L    ++ +   A+ A+GL + + R L AAD FVR G +        G+ L    VG
Sbjct: 90  GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVG 149
Query: 163 IVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVC-ELAANSDVLIICCA 218
            +G+G+IG  +A RL+ +G  + Y+      + T          C EL A+SD +++   
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALP 209
Query: 219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--- 275
           L   T HL+N ++L  +    +++N  RG+++DE  ++  L RG++GG   DVFE E   
Sbjct: 210 LNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269
Query: 276 -PDVPEQLFALDNVVLSPHSAVFTP 299
             D P+Q   +D  +L+  + +FTP
Sbjct: 270 RADRPQQ---IDPALLAHPNTLFTP 291

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 18/299 (6%)
Query: 9   VQFPQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSA 66
           V  P VL+  K  PS  A LG+Q     + +++       P  + L        A+   +
Sbjct: 2   VSLPVVLIADKLAPSTVAALGDQV----EVRWVDG-----PDRDKLLAAVPEADALLVRS 52
Query: 67  GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
              V AE+L   P++++V     GL+++DV     RGV + NA        A++AL LL+
Sbjct: 53  ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLL 112
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
              R++ AAD  +R+  W   + F  G+++ GK VG+VGLG IG  VA+R+ AFG  V  
Sbjct: 113 AASRQIPAADASLREHTWK-RSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170
Query: 187 NSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII- 242
                 P+       ++    +L A +D + +    T +T  LI+K+ L A  K GVII 
Sbjct: 171 YDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL-AKTKPGVIIV 229
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           N  RG ++DE  +   +  G +  AGLDVF  EP     LF L  VV++PH    T E+
Sbjct: 230 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 288

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 18/299 (6%)
Query: 9   VQFPQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSA 66
           V  P VL+  K  PS  A LG+Q     + +++       P  + L        A+   +
Sbjct: 1   VSLPVVLIADKLAPSTVAALGDQV----EVRWVDG-----PDRDKLLAAVPEADALLVRS 51
Query: 67  GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
              V AE+L   P++++V     GL+++DV     RGV + NA        A++AL LL+
Sbjct: 52  ATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLL 111
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
              R++ AAD  +R+  W   + F  G+++ GK VG+VGLG IG  VA+R+ AFG  V  
Sbjct: 112 AASRQIPAADASLREHTWK-RSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 169
Query: 187 NSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII- 242
                 P+       ++    +L A +D + +    T +T  LI+K+ L A  K GVII 
Sbjct: 170 YDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL-AKTKPGVIIV 228
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPES 301
           N  RG ++DE  +   +  G +  AGLDVF  EP     LF L  VV++PH    T E+
Sbjct: 229 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 287

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 21/266 (7%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T E+L   P ++L+   S G +HID+  C+++G+ + +      E VA++    ++ ++
Sbjct: 54  LTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLV 113
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           ++L   +  V++  +  ++E  L  +L    +G++G G IGS VA    AFG  V     
Sbjct: 114 KRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDV 172
Query: 190 NKKPSVTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVGR 246
            K+  +      Y  + EL   SDV+ +    T +THH IN++  ++L K GV +IN  R
Sbjct: 173 VKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEE-RISLXKDGVYLINTAR 231
Query: 247 GAIIDEKEMVGCLLRGEIGGAGLDVFENE-------------PDVPEQLFAL---DNVVL 290
           G ++D   +     RG+  G GLDVFE+E              D   ++  L   DNV++
Sbjct: 232 GKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII 291
Query: 291 SPHSAVFTPESFKDVCELAVANLEAF 316
           +PH A +T +S + + E  V  ++AF
Sbjct: 292 TPHIAYYTDKSLERIREETVKVVKAF 317

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           V A+ L+  PE+R++     G ++ DV  C  RGV L    ++ +   A+ A+GL + + 
Sbjct: 58  VDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLG 117
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           R L AAD FVR G +        G+ L    VG +G G+IG   A RL+ +G  + Y++ 
Sbjct: 118 RHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAA 177
Query: 190 NKKPSVTYP---FYPDVC-ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG 245
               + T          C EL A+SD +++   L   T HL+N ++L  +    +++N  
Sbjct: 178 KALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 237
Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENE----PDVPEQLFALDNVVLSPHSAVFTP 299
           RG+++DE  ++  L RG++GG   DVFE E     D P+Q   +D  +L+  + +FTP
Sbjct: 238 RGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQ---IDPALLAHPNTLFTP 292

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 130/275 (47%), Gaps = 15/275 (5%)
Query: 69  PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           P  A+I+  LP  +++  A  AG + +D+     RGVA AN+        +D AL L++ 
Sbjct: 68  PWNADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 128 VLRKLSAADCFVRQGLWPI--NAEFPLGSKLGGKR---VGIVGLGSIGSEVAKR-LEAFG 181
           V R  S ++   R G           +G      R   +G VGLG+I  E+A++ +   G
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 182 CCVSY------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235
             + Y      ++  +K ++       + ELA  SD + +       THHLI++    A+
Sbjct: 188 MKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAM 246
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
                I+N  RG +I +  ++  L  G++  AGLDV E EP V ++L  + +V L+ H  
Sbjct: 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIG 306
Query: 296 VFTPESFKDVCELAVANLEAF-FSNKPLLTPFAAV 329
               E+F +   L + N++ F    KPLLTP   V
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKV 341

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 15/275 (5%)
Query: 69  PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           P  A+++  LP  +++  A  AG + +D+     RGVA AN+        +D AL L++ 
Sbjct: 68  PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 128 VLRKLSAADCFVRQGLWPI--NAEFPLGSKLGGKR---VGIVGLGSIGSEVAKR-LEAFG 181
           V R  S ++   R G           +G      R   +G VGLG+I  E+A++ +   G
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 182 CCVSY------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235
             + Y      ++  +K ++       + ELA  SD + +       THHLI++    A+
Sbjct: 188 MKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAM 246
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
                I+N  RG +I +  ++  L  G++  AGLDV E EP+V ++L  + +V L+ H  
Sbjct: 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIG 306
Query: 296 VFTPESFKDVCELAVANLEAF-FSNKPLLTPFAAV 329
               E+F +   L + N++ F    KPLLTP   V
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKV 341

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 15/275 (5%)
Query: 69  PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           P  A+++  LP  +++  A  AG + +D+     RGVA AN+        +D AL L++ 
Sbjct: 68  PWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILS 127
Query: 128 VLRKLSAADCFVRQGLWPI--NAEFPLGSKLGGKR---VGIVGLGSIGSEVAKR-LEAFG 181
           V R  S ++   R G           +G      R   +G VGLG+I  E+A++ +   G
Sbjct: 128 VFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLG 187
Query: 182 CCVSY------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL 235
             + Y      ++  +K ++       + ELA  SD + +       THHLI++    A+
Sbjct: 188 MKLVYYDVAPADAETEK-ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAM 246
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSA 295
                I+N  RG +I +  ++  L  G++  AGLDV E EP V ++L  + +V L+ H  
Sbjct: 247 KPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIG 306
Query: 296 VFTPESFKDVCELAVANLEAF-FSNKPLLTPFAAV 329
               E+F +   L + N++ F    KPLLTP   V
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKV 341

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 7/257 (2%)
Query: 49  HEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN 108
            E L       + +   +   VTA+++    ++++V     G++++D+    R+G+ + N
Sbjct: 58  KEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMN 117
Query: 109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS 168
             N  S   A+   G+++ + R++  A   ++ G W    +F +G++L GK +GI+GLG 
Sbjct: 118 TPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGR 175
Query: 169 IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPD---VCELAANSDVLIICCALTDQTHH 225
           IG EVA R+++FG           P V+  F      + E+    D + +   L   T  
Sbjct: 176 IGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTG 235
Query: 226 LINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA 284
           L+N     A  KKGV ++N  RG I+DE  ++  L  G+  GA LDVF  EP     L  
Sbjct: 236 LLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVD 294
Query: 285 LDNVVLSPHSAVFTPES 301
            +NV+  PH    T E+
Sbjct: 295 HENVISCPHLGASTKEA 311

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 11/262 (4%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T E L     +R++V   +G ++ID+      G+A+ N      E+ AD  L  ++++ 
Sbjct: 78  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+ +     +R+G     +  I       +++ G+ +GI+GLG +G  VA R +AFG  V
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNV 197
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                Y S   + ++       + +L  +SD + + C L +  HHLIN   +  + +   
Sbjct: 198 LFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
           ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L    N++ +PH+A ++
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 299 PESFKDVCELAVANLEAFFSNK 320
            ++  ++ E A   +    + +
Sbjct: 318 EQASIEMREEAAREIRRAITGR 339

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 11/262 (4%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T E L     +R++V   +G ++ID+      G+A+ N      E+ AD  L  ++++ 
Sbjct: 78  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+ +     +R+G     +  I       +++ G+ +GI+GLG +G  VA R +AFG  V
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNV 197
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                Y S   + ++       + +L  +SD + + C L +  HHLIN   +  + +   
Sbjct: 198 LFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
           ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L    N++ +PH+A ++
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 299 PESFKDVCELAVANLEAFFSNK 320
            ++  ++ E A   +    + +
Sbjct: 318 EQASIEMREEAAREIRRAITGR 339

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 17/244 (6%)
Query: 86  ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
           +T AG++ +    CRR    L N   +F   +++Y  G L+ ++R+L       +Q LW 
Sbjct: 73  STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ 131
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPD 202
            +        L G+ + I+G GSIG  +A   + FG  V   SR+ +    +      P 
Sbjct: 132 SHPY----QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPA 187
Query: 203 VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG 262
           + ++ A +DV++     T +THHL             ++ NVGRG  I+E +++  L  G
Sbjct: 188 LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG 247
Query: 263 EIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFT-PESFKDVCELAVANLEAFFS 318
           ++G A LDVFE EP   D P  L+   N++++PH++ ++ P+   DV ++ V N   F  
Sbjct: 248 KLGMAVLDVFEQEPLPADSP--LWGQPNLIITPHNSAYSFPD---DVAQIFVRNYIRFID 302
Query: 319 NKPL 322
            +PL
Sbjct: 303 GQPL 306

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 129/262 (49%), Gaps = 11/262 (4%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T E L     +R++V   +G ++ID+      G+A+ N      E+ AD  L  ++++ 
Sbjct: 75  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 134
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+ +     +R+G     +  I       +++ G+ +GI+GLG +G  VA R +AFG  V
Sbjct: 135 RRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNV 194
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                Y S   + ++       + +L  +SD + + C L +  HHLIN   +  + +   
Sbjct: 195 LFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 254
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
           ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L    N++ +PH+A ++
Sbjct: 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 314
Query: 299 PESFKDVCELAVANLEAFFSNK 320
            ++  ++ E A   +    + +
Sbjct: 315 EQASIEMREEAAREIRRAITGR 336

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 128/262 (48%), Gaps = 11/262 (4%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T E L     +R++V   +G ++ID+      G+A+ N      E+ AD  L  ++++ 
Sbjct: 78  LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLY 137
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+ +     +R+G     +  I       +++ G+ +GI+GL  +G  VA R +AFG  V
Sbjct: 138 RRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNV 197
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                Y S   + ++       + +L  +SD + + C L +  HHLIN   +  + +   
Sbjct: 198 LFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 257
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
           ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L    N++ +PH+A ++
Sbjct: 258 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 317
Query: 299 PESFKDVCELAVANLEAFFSNK 320
            ++  ++ E A   +    + +
Sbjct: 318 EQASIEMREEAAREIRRAITGR 339

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 38/308 (12%)
Query: 13  QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSS------A 66
            VLLL    G +    ++F S+ +  +     AL         A  +KAI S+      +
Sbjct: 17  NVLLLE---GISQTAVEYFKSSGYTNVTHLPKALD-------KADLIKAISSAHIIGIRS 66
Query: 67  GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
              +T EI      +  V   S G N +++   R+RG+ + NA    +  VA+  +G +I
Sbjct: 67  RTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEII 126
Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSK-LGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
            ++R++         G W   A   +GS+ + GK +GIVG G+IGS+V    E+ G  V 
Sbjct: 127 MLMRRIFPRSVSAHAGGWEKTA---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR 183
Query: 186 YNSR-------NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238
           Y          N KP+ +      + EL   SDV+ +    +  T  LI +  L  + K 
Sbjct: 184 YYDTSDKLQYGNVKPAAS------LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKG 237
Query: 239 GVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPH 293
             +IN  RG+ +D + +   L  G + GA +DVF  EP    + F+     L+NV+L+PH
Sbjct: 238 AFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297
Query: 294 SAVFTPES 301
               T E+
Sbjct: 298 IGGSTEEA 305

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 33/314 (10%)
Query: 34  NKFQYLKAYE----SALPLH-EFLTLH----AHSVKAIFSSAGAPVTAEILRLLPE--VR 82
           ++ QY K +     + L  H EFL  +    A     I S    P  A +   +    ++
Sbjct: 11  DEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIK 70
Query: 83  LVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQG 142
            +   + G ++ID+   ++ G+ L+N        +A++AL   + +LR +      ++ G
Sbjct: 71  FLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAG 130
Query: 143 LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYP 198
            +     F +G +LG + VG++G G IG    K  + FG  V     Y  +   P   Y 
Sbjct: 131 DYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV 189
Query: 199 FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGC 258
              D   L   SDV+ +     +Q  H+IN+     +    ++IN  R  +ID + M+  
Sbjct: 190 SLED---LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSN 246
Query: 259 LLRGEIGGAGLDVFENEPD--------------VPEQLFALDNVVLSPHSAVFTPESFKD 304
           L  G++ G G+D +E E +              + ++L  + NVVLSPH A +T  +  +
Sbjct: 247 LKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHN 306
Query: 305 VCELAVANLEAFFS 318
           +   ++ +L  F +
Sbjct: 307 MVYFSLQHLVDFLT 320

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 11/262 (4%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T E L     +R++V   +G +++D+      G+A+ N  +   E+ AD  +  ++++ 
Sbjct: 59  LTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLY 118
Query: 130 RKLSAADCFVRQG-----LWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           R+ +     +R+G     +  I       +++ G+ +G++G G  G  VA R +AFG  V
Sbjct: 119 RRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 178
Query: 185 ----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                Y     + S+       + +L   SD + + C L +  HHLIN   +  + +   
Sbjct: 179 IFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAF 238
Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHSAVFT 298
           ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L    N++ +PH+A ++
Sbjct: 239 LVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYS 298
Query: 299 PESFKDVCELAVANLEAFFSNK 320
            ++  ++ E A   +    + +
Sbjct: 299 EQASLEMREAAATEIRRAITGR 320

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 13/305 (4%)
Query: 30  FFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVAT 87
           +  S   QY+   +   P  E L  H   +  + S+   P  VTAE ++    ++L++  
Sbjct: 35  WLESQGHQYIVTDDKEGPDCE-LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTA 93
Query: 88  SAGLNHIDVVECRRRGVALA--NAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
             G +HID+      G+ +A     NV S  VA+  L  ++ ++R        V +G W 
Sbjct: 94  GIGSDHIDLQAAAAAGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWN 151
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-----KPSVTYPFY 200
           +         L GK +G VG G IG  + +RL+ FGC + Y+ R +     +      F 
Sbjct: 152 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 211
Query: 201 PDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260
            D+ E+    DV++I   LT++T  + NK+++  L K  +I+N  RGAI++ + +V  + 
Sbjct: 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 271
Query: 261 RGEIGGAGLDVFENEPDVPEQLFA-LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSN 319
            G IGG   DV++ +P   +  +  + N  ++PH++  T ++           LE +F  
Sbjct: 272 SGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKG 331
Query: 320 KPLLT 324
           +   T
Sbjct: 332 EDFPT 336

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 13/305 (4%)
Query: 30  FFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVAT 87
           +  S   QY+   +   P  E L  H   +  + S+   P  VTAE ++    ++L++  
Sbjct: 41  WLESQGHQYIVTDDKEGPDCE-LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTA 99
Query: 88  SAGLNHIDVVECRRRGVALA--NAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
             G +HID+      G+ +A     NV S  VA+  L  ++ ++R        V +G W 
Sbjct: 100 GIGSDHIDLQAAAAAGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWN 157
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK-----KPSVTYPFY 200
           +         L GK +G VG G IG  + +RL+ FGC + Y+ R +     +      F 
Sbjct: 158 VAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV 217
Query: 201 PDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL 260
            D+ E+    DV++I   LT++T  + NK+++  L K  +I+N  RGAI++ + +V  + 
Sbjct: 218 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE 277
Query: 261 RGEIGGAGLDVFENEPDVPEQLFA-LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSN 319
            G IGG   DV++ +P   +  +  + N  ++PH++  T ++           LE +F  
Sbjct: 278 SGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKG 337
Query: 320 KPLLT 324
           +   T
Sbjct: 338 EDFPT 342

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 22/263 (8%)
Query: 70  VTAEILRLLPEVRLV-----VATSAGLNHIDVVECRRRGVA-LANAGNVFSEDVADYALG 123
           VT ++L  LP+++++     V+  AG  HID+  C  +GV  L   G+  +   A+    
Sbjct: 61  VTRQLLDRLPKLKIISQTGRVSRDAG-GHIDLEACTDKGVVVLEGKGSPVAP--AELTWA 117
Query: 124 LLIDVLRKLSAADCFVRQGLWPINA--------EFPLGSKLGGKRVGIVGLGSIGSEVAK 175
           L++   R++      ++ G W  +          F +G  L G+ +GI G G IG  VA 
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177
Query: 176 RLEAFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231
              AFG  V      NS+ +  +  +        L   SDVL +   L D+T  +I    
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237
Query: 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVL 290
           L  +    + +N  R  +++E  MV  L RG  G A +DVFE EP +    L  ++N + 
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297
Query: 291 SPHSAVFTPESFKDVCELAVANL 313
           +PH      ES++    +A  N+
Sbjct: 298 TPHIGYVERESYEMYFGIAFQNI 320

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 12/285 (4%)
Query: 52  LTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
           L  H H  + I S    P  +TAE +   P+++L +    G +H+D+       + +A  
Sbjct: 84  LEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV 143
Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
               S  VA++ + +++ ++R    +  + R G W I         + G  VG V  G I
Sbjct: 144 TYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRI 203
Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTH 224
           G  V + L  F   + Y  R++ P      +   ++    ++    DV+ + C L  +T 
Sbjct: 204 GLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETE 263
Query: 225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQ 281
           H+IN + L    +   ++N  RG + D   +V  L  G + G   DV+  +P   D P +
Sbjct: 264 HMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 323
Query: 282 LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326
               +   ++PH +  +  +           LE +F  +P+   +
Sbjct: 324 TMPHNG--MTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEY 366

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 12/285 (4%)
Query: 52  LTLHAHSVKAIFSSAGAP--VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
           L  H H  + I S    P  +TAE +   P+++L +    G +H+D+       + +A  
Sbjct: 83  LEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV 142
Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
               S  VA++ + +++ ++R    +  + R G W I         + G  VG V  G I
Sbjct: 143 TYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRI 202
Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTH 224
           G  V + L  F   + Y  R++ P      +   ++    ++    DV+ + C L  +T 
Sbjct: 203 GLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETE 262
Query: 225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQ 281
           H+IN + L    +   ++N  RG + D   +V  L  G + G   DV+  +P   D P +
Sbjct: 263 HMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWR 322
Query: 282 LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF 326
               +   ++PH +  +  +           LE +F  +P+   +
Sbjct: 323 TMPHNG--MTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEY 365

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 12/259 (4%)
Query: 62  IFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYA 121
           I   +   VT +++    +++++     GL++ID  E  +R + +  A    ++   +  
Sbjct: 50  IVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELT 109
Query: 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
           +GL+I   RK+  +    + G++    +   G +L GK +GIVG G IG++V     A G
Sbjct: 110 IGLMIAAARKMYTSMALAKSGIF----KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMG 165
Query: 182 CCV-SY---NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
             V +Y   + R K   +       + EL  NSDV+ +   ++     +I+      +  
Sbjct: 166 MKVLAYDILDIREKAEKINAKAVS-LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224
Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE---QLFALDNVVLSPHS 294
             +I+N  R   ++ K ++  + +G++     DVF NEP   E   +L   + V+++ H 
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 295 AVFTPESFKDVCELAVANL 313
              T E+ K V E+   NL
Sbjct: 285 GAQTKEAQKRVAEMTTQNL 303

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 8/261 (3%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T +++    ++  + A + G N +D+    +RG+ + NA    +  VA+  +G L+ +L
Sbjct: 65  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 124
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNS 188
           R +  A+    +G+W   A     ++  GK++GI+G G IG+++    E+ G  V  Y+ 
Sbjct: 125 RGVPEANAKAHRGVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 182
Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
            NK P         + +L   SDV+ +       T +++  + +  +    ++IN  RG 
Sbjct: 183 ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT 242
Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFK 303
           ++D   +   L    + GA +DVF  EP      F       DNV+L+PH    T E+ +
Sbjct: 243 VVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
Query: 304 DVCELAVANLEAFFSNKPLLT 324
           ++       L  +  N   L+
Sbjct: 303 NIGLEVAGKLIKYSDNGSTLS 323

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 121/261 (46%), Gaps = 8/261 (3%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T +++    ++  + A + G N +D+    +RG+ + NA    +  VA+  +G L+ +L
Sbjct: 65  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 124
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNS 188
           R +  A+    +G+W   A     ++  GK++GI+G G IG+++    E+ G  V  Y+ 
Sbjct: 125 RGVPEANAKAHRGVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 182
Query: 189 RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA 248
            NK P         + +L   SDV+ +       T +++  + +  +    ++IN  RG 
Sbjct: 183 ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT 242
Query: 249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFK 303
           ++D   +   L    + GA +DVF  EP      F       DNV+L+PH    T E+ +
Sbjct: 243 VVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQE 302
Query: 304 DVCELAVANLEAFFSNKPLLT 324
           ++       L  +  N   L+
Sbjct: 303 NIGLEVAGKLIKYSDNGSTLS 323

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           A +T E +     ++L +    G +H+D+     R V +A      S  VA++ + +++ 
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           ++R    +  + R+G W I         L    VG V  G IG  V +RL  F   + Y 
Sbjct: 162 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 221
Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
            R++ P      +   ++    ++    DV+ + C L  +T H+IN + L    +   I+
Sbjct: 222 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 281
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTP 299
           N  RG + D   +   L  G + G   DV+  +P   D P +    +   ++PH +  T 
Sbjct: 282 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTL 339
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
            +           LE FF  +P+
Sbjct: 340 TAQARYAAGTREILEXFFEGRPI 362

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           A +T E +     ++L +    G +H+D+     R V +A      S  VA++ + +++ 
Sbjct: 102 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 161
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           ++R    +  + R+G W I         L    VG V  G IG  V +RL  F   + Y 
Sbjct: 162 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 221
Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
            R++ P      +   ++    ++    DV+ + C L  +T H+IN + L    +   I+
Sbjct: 222 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 281
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTP 299
           N  RG + D   +   L  G + G   DV+  +P   D P +    +   ++PH +  T 
Sbjct: 282 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTL 339
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
            +           LE FF  +P+
Sbjct: 340 TAQARYAAGTREILECFFEGRPI 362

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 10/263 (3%)
Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           A +T E +     ++L +    G +H+D+     R V +A      S  VA++ + +++ 
Sbjct: 101 AYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 160
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           ++R    +  + R+G W I         L    VG V  G IG  V +RL  F   + Y 
Sbjct: 161 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 220
Query: 188 SRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
            R++ P      +   ++    ++    DV+ + C L  +T H+IN + L    +   I+
Sbjct: 221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 280
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAVFTP 299
           N  RG + D   +   L  G + G   DV+  +P   D P +    +   ++PH +  T 
Sbjct: 281 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNG--MTPHISGTTL 338
Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
            +           LE FF  +P+
Sbjct: 339 TAQARYAAGTREILECFFEGRPI 361

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 8/241 (3%)
Query: 90  GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE 149
           G N +D+    +RG+ + NA    +  VA+  +G L+ +LR +  A+    +G+W   A 
Sbjct: 84  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 143
Query: 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPFYPDVCELAA 208
               ++  GK++GI+G G IG+++    E+ G  V  Y+  NK P         + +L  
Sbjct: 144 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 201
Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAG 268
            SDV+ +       T +++  + +  +    ++IN  RG ++D   +   L    + GA 
Sbjct: 202 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAA 261
Query: 269 LDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
           +DVF  EP      F       DNV+L+PH    T E+ +++       L  +  N   L
Sbjct: 262 IDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 321
Query: 324 T 324
           +
Sbjct: 322 S 322

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 69  PVTAEIL-RLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           P+   IL R   +++ V   SAG++++ +   +  GV +AN   + ++ +++  L  ++ 
Sbjct: 49  PLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLS 108
Query: 128 VLRKLSAA---DCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           V+R   AA       RQ   P+       S L G+++ I G G IG  +A +  A G  V
Sbjct: 109 VVRGYHAAWLNQRGARQWALPMTT-----STLTGQQLLIYGTGQIGQSLAAKASALGMHV 163
Query: 185 SYNSRNKKPSVTYPFYPDVCELAANS-----DVLIICCALTDQTHHLINKQVLLALGKKG 239
              +    P+    F+  V   A        + ++    LT  THHL + ++     ++ 
Sbjct: 164 IGVNTTGHPADH--FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQP 221
Query: 240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPH 293
           ++IN+GRG  +D   ++  L   ++  A LDV E EP   D P  L+  D+V+++PH
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHP--LWQRDDVLITPH 276

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 90  GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQG---LWPI 146
           G N I+    ++  + + N        +A+  +   + +LRK+      +       WP 
Sbjct: 80  GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPS 139
Query: 147 NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF--YPDVC 204
           N    + +++    VG++G+G IGS VA+   A G  V        P    PF  Y D  
Sbjct: 140 NL---ISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-PFLTYTDFD 195
Query: 205 ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI 264
            +   +D++ +   L   T ++I ++ L  + K   +IN  RG ++D   ++  L  GEI
Sbjct: 196 TVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEI 255
Query: 265 GGAGLDVFENE-----------PDVPEQ---LFALDNVVLSPHSAVFTPESFKDVCELAV 310
            GAGLD    E            ++PE    L  + NVV++PHSA +T  S +++ ++ +
Sbjct: 256 AGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICL 315
Query: 311 AN 312
            +
Sbjct: 316 TD 317

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 8/241 (3%)
Query: 90  GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE 149
           G N +D+    +RG+ + NA    +  VA+  +G L+ +LR +  A+    +G+W   A 
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPFYPDVCELAA 208
               ++  GK++GI+G G IG+++    E+ G  V  Y+  NK P         + +L  
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAG 268
            SDV+ +       T +    + +       ++IN  RG ++D   +   L    + GA 
Sbjct: 203 XSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAA 262
Query: 269 LDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
           +DVF  EP      F       DNV+L+PH    T E+ +++       L  +  N   L
Sbjct: 263 IDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 322
Query: 324 T 324
           +
Sbjct: 323 S 323

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 119 DYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLE 178
           +YA+  ++   R+         Q LW    E+          VGI G G +G++VA+ L+
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEF----SVGIXGAGVLGAKVAESLQ 159
Query: 179 AFGCCVSYNSRNKKPSVTYPFYPDVCELAA---NSDVLIICCALTDQTHHLINKQVLLAL 235
           A+G  +   SR++K       Y    EL A    + VLI     T QT  +IN ++L  L
Sbjct: 160 AWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPH 293
                ++N+ RG  + E +++  L  G++ GA LDVF  EP +P++  L+    V  +PH
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPH 278
Query: 294 -SAVFTPESFKDVCELAVANLE 314
            +AV  P    D     +  LE
Sbjct: 279 IAAVTRPAEAIDYISRTITQLE 300

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 22/256 (8%)
Query: 88  SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFV-RQGL-WP 145
           + G+++ID+ + +  G  + N        +A++A      +LR+  A D  V R  L W 
Sbjct: 78  NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-FYPD-V 203
                 +G ++  + VG+VG G IG    + +E FG  V      + P +    +Y D +
Sbjct: 138 PT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSL 193
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263
            +L   +DV+ +         H+IN + +  + +  VI+NV RG ++D   ++  L  G+
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGK 253
Query: 264 IGGAGLDVFENE-------------PDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELA 309
           I G  +DV+E E             PD     L A  NV+++PH+A +T  + +++   A
Sbjct: 254 IFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKA 313
Query: 310 VANLEAFFSNKPLLTP 325
             N       K   TP
Sbjct: 314 FDNNLELVEGKEAETP 329

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 10/262 (3%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T +++    ++  + A + G N +D+    +RG+ + NA    +  VA+  +G L+ +L
Sbjct: 59  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLL 118
Query: 130 RKLSAADCFVRQGLWPINAEFPLGS-KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YN 187
           R +  A+    +G   +  +   GS +  GK++GI+G G IG+++    E+ G  V  Y+
Sbjct: 119 RGVPEANAKAHRG---VGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD 175
Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG 247
             NK P         + +L   SDV+ +       T +    + +       ++IN  RG
Sbjct: 176 IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRG 235
Query: 248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFA-----LDNVVLSPHSAVFTPESF 302
            ++D   +   L    + GA +DVF  EP      F       DNV+L+PH    T E+ 
Sbjct: 236 TVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295
Query: 303 KDVCELAVANLEAFFSNKPLLT 324
           +++       L  +  N   L+
Sbjct: 296 ENIGLEVAGKLIKYSDNGSTLS 317

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 120/256 (46%), Gaps = 8/256 (3%)
Query: 63  FSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYAL 122
           +  A A V  +   L    + + A SAG++HIDV       V  +NAG  +S  VA++A 
Sbjct: 32  YYDAEAQVIKDRYVLGKRTKXIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAF 90
Query: 123 GLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182
            LL+   + +   +   + G++    + P  + L GK +GI+G G IG  VA   +AFG 
Sbjct: 91  ALLLAHAKNILENNELXKAGIF---RQSPT-TLLYGKALGILGYGGIGRRVAHLAKAFGX 146
Query: 183 CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
            V   +R+              +L   SD ++I   LTD+T   +N ++L    K   I+
Sbjct: 147 RVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIV 206
Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESF 302
           NV R  ++ + + +G L          DV+ NEP++ E    L N +LSPH A       
Sbjct: 207 NVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGGXSGEI 264
Query: 303 KDVC-ELAVANLEAFF 317
            D+  +LA  N+  FF
Sbjct: 265 XDIAIQLAFENVRNFF 280

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 20/270 (7%)
Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALA----NAGNVFSEDVADYALG 123
           A +T E +    +++LVV    G +HID+    + G  ++       NV S  VA++ + 
Sbjct: 72  AYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVM 129
Query: 124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG-- 181
            ++ ++R    A   +    W + A       + GK +  +G G IG  V +RL  F   
Sbjct: 130 TMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 189
Query: 182 --CCVSYNS--RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
                 Y +  ++ +  V      ++ EL A +D++ +   L   T  LINK++L    K
Sbjct: 190 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249
Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVP----EQLFALDNVVL 290
              ++N  RGAI   +++   L  G++ G G DV+  +P   D P       +   N  +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AM 308
Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNK 320
           +PH +  T ++     +  V  LE+FF+ K
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTGK 338

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 88  SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFV-RQGL-WP 145
           + G+++ID+ + +  G  + N        +A++A      +LR+  A D  V R  L W 
Sbjct: 78  NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYP-FYPD-V 203
                 +G ++  + VG+VG G IG    + +E FG  V      + P +    +Y D +
Sbjct: 138 PT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSL 193
Query: 204 CELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE 263
            +L   +DV+ +         H+IN + +  + +  VI+NV RG ++D   ++  L  G+
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGK 253
Query: 264 IGGAGLDVFENE-------------PDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELA 309
           I G  +DV+E E             PD     L A  NV+++P +A +T  + +++   A
Sbjct: 254 IFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKA 313
Query: 310 VANLEAFFSNKPLLTP 325
             N       K   TP
Sbjct: 314 FDNNLELVEGKEAETP 329

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 20/270 (7%)
Query: 68  APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALA----NAGNVFSEDVADYALG 123
           A +T E +    +++LVV    G +HID+    + G  ++       NV S  VA++ + 
Sbjct: 73  AYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVM 130
Query: 124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG-- 181
            ++ ++R    A   +    W + A       + GK +  +G G IG  V +RL  F   
Sbjct: 131 TMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPK 190
Query: 182 --CCVSYNS--RNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
                 Y +  ++ +  V      ++ EL A +D++ +   L   T  LINK++L    K
Sbjct: 191 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 250
Query: 238 KGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVP----EQLFALDNVVL 290
              ++N  RGAI   +++   L  G++ G G DV+  +P   D P       +   N  +
Sbjct: 251 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AM 309
Query: 291 SPHSAVFTPESFKDVCELAVANLEAFFSNK 320
           +PH +  T ++     +     LE+FF+ K
Sbjct: 310 TPHYSGTTLDAQTRYAQGTKNILESFFTGK 339

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 17/250 (6%)
Query: 81  VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
           V+ ++  +AG +HID    +  G  +A         +A+ A+   + +LR  +       
Sbjct: 70  VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTA 129
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNKKPSVTYPF 199
           +  + ++A F    ++    VG+VGLG IG   A+     G  V   +    K    Y  
Sbjct: 130 KKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCT 188
Query: 200 YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCL 259
              + E+   SD++ I      +   ++ +  L  +    +++N  RG ++D + ++  +
Sbjct: 189 QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248
Query: 260 LRGEIGGAGLDVFENEPDV------------P--EQLFAL-DNVVLSPHSAVFTPESFKD 304
             G++GG G DV + E  V            P  E+L  L   V+++PH   +T E+ K+
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKN 308
Query: 305 VCELAVANLE 314
           + E++  NL+
Sbjct: 309 MVEVSYQNLK 318

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 25/272 (9%)
Query: 71  TAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
           TA+ L+ L +  V  +   + G+++ID+ + +  G  + N        +A++A      V
Sbjct: 59  TADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARV 118
Query: 129 LRKLSAADCFV--RQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
           LR+    D  +  R   W       +G ++  + VG+VG G IG    + +E FG  V  
Sbjct: 119 LRQDKRMDEKMAKRDLRWAPT----IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIA 174
Query: 187 NSRNKKPSVTYP-FYPD-VCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244
               K P +    +Y D + +L   +DV+ +         H+IN + +  +    VI+N 
Sbjct: 175 YDIFKNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNC 234
Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENE----------PDVPEQLFA--LD--NVVL 290
            RG ++D   ++  L  G+I G  +D +E+E           + P++  A  +D  NV++
Sbjct: 235 SRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLV 294
Query: 291 SPHSAVFTPESFKDVCELAV-ANLEAFFSNKP 321
           +PH+A +T  + +++   A   NL+     KP
Sbjct: 295 TPHTAFYTTHAVRNMVVKAFNNNLKLINGEKP 326

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 7/228 (3%)
Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +TAE L   P ++ +   +AGL+H+             NAG+  ++ VA++AL LL+   
Sbjct: 40  ITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-NADAVAEFALALLLAPY 98
Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           +++       ++G +  + E PL   + G++V ++GLG IG+ V K L A G  V   SR
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR 155
Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
             K    + F   + E    +   +    L   T  L+  Q L    +  V +NVGR  +
Sbjct: 156 TPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEV 214
Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPE--QLFALDNVVLSPHSA 295
           +D   ++  L          DV+    D  +  + F+L NVV +P  A
Sbjct: 215 LDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 262

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 25/224 (11%)
Query: 81  VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
           +  V   +AG +H+D    ++ G+  + A    +  V +Y    L+     L+  D F  
Sbjct: 62  INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALL----XLAERDGF-- 115
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFY 200
                          L  + +GIVG+G++GS +  RLEA G         +        +
Sbjct: 116 --------------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDF 161
Query: 201 PDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
             + EL   +DVL     L      +T HL ++ ++  L    ++IN  RG ++D   ++
Sbjct: 162 RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL 221
Query: 257 GCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
             L  G+     LDV+E EPD+   L    ++  S H A +T E
Sbjct: 222 ARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTS-HIAGYTLE 264

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 29/252 (11%)
Query: 69  PVTAEILRLLPEVRLVVATSAGL-NHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
           P++AE L   P +R ++   + L N+       +RG+ +   G VF+E VA+  LG  + 
Sbjct: 85  PLSAETLARXPALRSILNVESNLLNNXPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALA 144
Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKL-GGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
           + R +  AD   ++G      E    ++L  G  +GIVG G +G  + + L  F   +  
Sbjct: 145 LARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARI-- 202
Query: 187 NSRNKKPSVTYPFYP------------DVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
                   V  P+ P             + ++   SD + +  A+T +    +  +   +
Sbjct: 203 -------RVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSS 255
Query: 235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLS 291
             +    I + R  ++D   +   +  G I  A  DV+  EP   D P  + +L   + S
Sbjct: 256 XRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEEPLPLDHP--VRSLKGFIRS 312
Query: 292 PHSAVFTPESFK 303
            H A     +FK
Sbjct: 313 AHRAGALDSAFK 324

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 81  VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR 140
           VR V   + G +H+D+      G+A ++A    +  V DY LG L+        A   VR
Sbjct: 59  VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLL--------AMAEVR 110
Query: 141 QGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFY 200
                       G+ L  +  G+VG G +G  + + L   G  V      ++       +
Sbjct: 111 ------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEF 158
Query: 201 PDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
             +  L A +DV+ +   L       T HL+++  L AL     ++N  RGA++D + + 
Sbjct: 159 VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALR 218
Query: 257 GCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
             L  G      LDV+E EP    +L A   ++ +PH A ++ E
Sbjct: 219 RLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLE 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-130
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-128
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	6e-98
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	4e-90
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-89
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	8e-88
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	8e-87
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	3e-86
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	2e-85
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	3e-80
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-74
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-74
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-72
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	4e-72
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	2e-70
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-66
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	1e-65
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	8e-65
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-64
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	2e-63
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-63
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-59
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	7e-58
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	8e-58
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-56
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-54
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	4e-54
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	7e-52
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-47
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	3e-47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	1e-46
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	8e-46
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	9e-12
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	6e-04

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  375 bits (964), Expect = e-130
 Identities = 143/316 (45%), Positives = 208/316 (65%), Gaps = 10/316 (3%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
             VL++          L ++F      +  + +       +FL L A S++A+  ++ A 
Sbjct: 24  IGVLMMCPMSTYLEQELDKRF------KLFRYWTQPAQ-RDFLALQAESIRAVVGNSNAG 76

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
             AE++  LP++ +V + S GL+ +D+++C  +GV + N  +V ++DVAD A+GL++ VL
Sbjct: 77  ADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVL 136

Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           R++   D +VR+G W    +F L +K  GKRVGI+GLG IG  VA+R EAF C +SY SR
Sbjct: 137 RRICECDKYVRRGAWK-FGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSR 195

Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
           +KKP+  Y +Y  V ELA+NSD+L++ C LT +T H+IN++V+ ALG KGV+IN+GRG  
Sbjct: 196 SKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255

Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELA 309
           +DE E+V  L+ G +GGAGLDVFE EP+VPE+LF L+NVVL PH    T E+ K + +L 
Sbjct: 256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLV 315

Query: 310 VANLEAFFSNKPLLTP 325
           V NLEA FS KPLLTP
Sbjct: 316 VGNLEAHFSGKPLLTP 331

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  368 bits (946), Expect = e-128
 Identities = 102/316 (32%), Positives = 165/316 (52%), Gaps = 10/316 (3%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P +LL+    P     L   +         + Y++A      L     S++A+ +  GA 
Sbjct: 31  PDLLLVEPMMPFVMDELQRNY------SVHRLYQAADR--PALEAALPSIRAVATGGGAG 82

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           ++ E +  LP + ++     G + +D+   RRR + +     V ++DVAD  + L++ VL
Sbjct: 83  LSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVL 142

Query: 130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR 189
           R++   D  VR+G W    + PLG    GKR+G++GLG IG  +A R EAFG  V Y +R
Sbjct: 143 RRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNR 202

Query: 190 NKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI 249
           +    V +  +    +LA +SDVL +C A +  T ++++  +L ALG +G+++NV RG +
Sbjct: 203 STLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV 262

Query: 250 IDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELA 309
           +DE  ++  L  G I GAGLDVF NEP +  +     N VL PH    T E+   + +L 
Sbjct: 263 VDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLV 322

Query: 310 VANLEAFFSNKPLLTP 325
           +ANL A F+ +     
Sbjct: 323 LANLAAHFAGEKAPNT 338

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  292 bits (749), Expect = 6e-98
 Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 19/324 (5%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
            +  L R+  P+  A L ++F        L+       L    +   AH  + +F +A  
Sbjct: 29  QKAFLCRRFTPAIEAELRQRF-------DLEVNLEDTVLTPSGIASRAHGAEVLFVTATE 81

Query: 69  PVTAEIL-RLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
            +TAE++ +L P ++ +   S G +HID+   R  G+ + +  +V S+  A+ A+ L+++
Sbjct: 82  AITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLN 141

Query: 128 VLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
             R+   AD  VR G WP       LG  L G+R+GI G+G IG  +A R   FG  + Y
Sbjct: 142 ACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY 201

Query: 187 NSRNKKPSVT---YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN 243
           ++R +          ++  +  L   SD+ +I      +    ++   +  + +  V+IN
Sbjct: 202 HNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVIN 261

Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH--SAVFTPES 301
           + RG +I++  ++  L    +  AGLDVF NEP +  +  +LDN+ L+PH  SA  T E+
Sbjct: 262 ISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSA--THET 319

Query: 302 FKDVCELAVANLEAFFSNKPLLTP 325
              +  L +  +EA   +      
Sbjct: 320 RDAMGWLLIQGIEALNQSDVPDNL 343

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  272 bits (697), Expect = 4e-90
 Identities = 85/338 (25%), Positives = 140/338 (41%), Gaps = 28/338 (8%)

Query: 12  PQVLLLRKP-----SGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFS-- 64
           P+VLLL  P       ++   ++F    +                        +AI    
Sbjct: 4   PRVLLLGDPARHLDDLWSDFQQKF----EVIPANLTTHDGFKQALREKRYGDFEAIIKLA 59

Query: 65  ----SAGAPVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVAD 119
               +   P  A+++  LP  +++  A  AG + +D+     RGVA AN+        +D
Sbjct: 60  VENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSD 119

Query: 120 YALGLLIDVLRKLSAADCFVRQGLWP-----INAEFPLGSKLGGKRVGIVGLGSIGSEVA 174
            AL L++ V R  S ++   R G                    G  +G VGLG+I  E+A
Sbjct: 120 LALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIA 179

Query: 175 KR-LEAFGCCVSYNSRNKKP-----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLIN 228
           ++ +   G  + Y            ++       + ELA  SD + +       THHLI+
Sbjct: 180 RKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID 239

Query: 229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV 288
           +    A+     I+N  RG +I +  ++  L  G++  AGLDV E EP V ++L  + +V
Sbjct: 240 EAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHV 299

Query: 289 VLSPHSAVFTPESFKDVCELAVANLEAFFSN-KPLLTP 325
            L+ H      E+F +   L + N++ F    KPLLTP
Sbjct: 300 TLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTP 337

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  270 bits (693), Expect = 1e-89
 Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 22/327 (6%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
           P+V + R+    G  ML ++F        ++ +     +  E L      V A+ +    
Sbjct: 3   PKVFITREIPEVGIKMLEDEF-------EVEVWGDEKEIPREILLKKVKEVDALVTMLSE 55

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            +  E+    P++R+V   + G ++ID+ E  +RG+ + N  +V ++  AD A  LL+  
Sbjct: 56  RIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 129 LRKLSAADCFVRQGLWPINA-----EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
            R +   D FVR G W         ++ LG  + GK +GI+GLG IG  +AKR + F   
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMR 175

Query: 184 VSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
           + Y SR +K  V       +  + +L   SD +++   LT +T+HLIN++ L  + K  +
Sbjct: 176 ILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAI 235

Query: 241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH--SAVFT 298
           +IN+ RG ++D   +V  L  G I GAGLDVFE EP   E+LF LDNVVL+PH  SA  +
Sbjct: 236 LINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSA--S 293

Query: 299 PESFKDVCELAVANLEAFFSNKPLLTP 325
             + + + EL   NL AF   +   T 
Sbjct: 294 FGAREGMAELVAKNLIAFKRGEIPPTL 320

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  265 bits (680), Expect = 8e-88
 Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 27/329 (8%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
            ++L+      +  A   E +        + A+     +  + +   A SV A+  +   
Sbjct: 2   KKILITWPLPEAAMARARESYD-------VIAHGDDPKITIDEMIETAKSVDALLITLNE 54

Query: 69  PVTAEILRLLPEVRL-VVAT-SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLI 126
               E++  +PE  +  ++T S G +HID+  C+ RG+ + NA +  +   A+ A+ LL+
Sbjct: 55  KCRKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLL 113

Query: 127 DVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
              R+    +  +R   WP       +G KL  K +GI G GSIG  +AKR + F   + 
Sbjct: 114 GSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDID 173

Query: 186 YNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK 238
           Y   ++  S        T+  +  +  L + S    +    T +T +  NK  + +L + 
Sbjct: 174 YFDTHRASSSDEASYQATF--HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 231

Query: 239 GVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH--SAV 296
            +++N  RG ++D + +V  L  G +  AG DVF  EP++ E  + L N  L PH  SA 
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA- 290

Query: 297 FTPESFKDVCELAVANLEAFFSNKPLLTP 325
              ++ +D+   A   ++A F    +   
Sbjct: 291 -ATQAREDMAHQANDLIDALFGGADMSYA 318

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  262 bits (671), Expect = 8e-87
 Identities = 62/280 (22%), Positives = 116/280 (41%), Gaps = 9/280 (3%)

Query: 50  EFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
            F  +    +  + ++  + +TAE L  +P ++ +   +AGL+H+         V +A  
Sbjct: 20  YFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPH-VTVAGN 78

Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
               ++ VA++AL LL+   +++      +++G +           + G++V ++GLG I
Sbjct: 79  AGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYG---RDVEIPLIQGEKVAVLGLGEI 135

Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK 229
           G+ V K L A G  V   SR  K    + F   + E    +   +    L   T  L+  
Sbjct: 136 GTRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKY 194

Query: 230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDN 287
           Q L  + +  V +NVGR  ++D   ++  L          DV+    D  +    F+L N
Sbjct: 195 QHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254

Query: 288 VVLSPH--SAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           VV +P           ++ +   AV NL  + +       
Sbjct: 255 VVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNI 294

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  260 bits (668), Expect = 3e-86
 Identities = 100/318 (31%), Positives = 156/318 (49%), Gaps = 17/318 (5%)

Query: 14  VLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVT 71
           VL+ R         L E+                LP  E L         +  +    + 
Sbjct: 3   VLVTRTLPGKALDRLRERGLEV-----EVHRGLFLPKAELLK-RVEGAVGLIPTVEDRID 56

Query: 72  AEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK 131
           AE++     ++++   S G++H+D+   R RG+ + +   V +E  AD  L LL+ V R+
Sbjct: 57  AEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARR 116

Query: 132 LSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN 190
           +     + R GLW     E  LG  L G  +G+VG+G IG  VAKR  AFG  V Y++R 
Sbjct: 117 VVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHART 176

Query: 191 KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
            KP      +  + EL   +DV+ +   LT +TH L+N++ L A+ +  +++N  RGA++
Sbjct: 177 PKPLPYP--FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234

Query: 251 DEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPH--SAVFTPESFKDVCE 307
           D + +V   LRG + GAGLDV + EP  P   L+AL N V++PH  SA     + + + E
Sbjct: 235 DTEALVE-ALRGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA--GRTTRERMAE 291

Query: 308 LAVANLEAFFSNKPLLTP 325
           +AV NL A    +    P
Sbjct: 292 VAVENLLAVLEGREPPNP 309

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  259 bits (664), Expect = 2e-85
 Identities = 89/326 (27%), Positives = 146/326 (44%), Gaps = 19/326 (5%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
            +V + R+    G   L            ++ ++S  P+  + L         +      
Sbjct: 9   MKVFVTRRIPAEGRVALARAADCE-----VEQWDSDEPIPAKELERGVAGAHGLLCLLSD 63

Query: 69  PVTAEIL-RLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
            V   IL      ++++   S G++H+ + E ++RG+ +    +V ++  A+ A+ LL+ 
Sbjct: 64  HVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLT 123

Query: 128 VLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC-VS 185
             R+L  A   V+ G W      +  G  L    VGI+GLG IG  +A+RL+ FG     
Sbjct: 124 TCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL 183

Query: 186 YNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII 242
           Y  R  +P     F   +    ELAA SD +++ C+LT  T  L NK     + +  V I
Sbjct: 184 YTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFI 243

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP-DVPEQLFALDNVVLSPH--SAVFTP 299
           N+ RG ++++ ++   L  G+I  AGLDV   EP      L  L N V+ PH  SA  T 
Sbjct: 244 NISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA--TH 301

Query: 300 ESFKDVCELAVANLEAFFSNKPLLTP 325
            +   +  LA  NL A    +P+ + 
Sbjct: 302 RTRNTMSLLAANNLLAGLRGEPMPSE 327

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  246 bits (630), Expect = 3e-80
 Identities = 84/335 (25%), Positives = 148/335 (44%), Gaps = 34/335 (10%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
           P++++  +       +L            L   ++   L  E +       +A+ +    
Sbjct: 3   PKLVITHRVHEEILQLLAPHC-------ELITNQTDSTLTREEILRRCRDAQAMMAFMPD 55

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            V A+ L+  PE+R++     G ++ DV  C  RGV L    ++ +   A+ A+GL + +
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
            R L AAD FVR G +        G+ L    VG +G+G+IG  +A RL+ +G  + Y+ 
Sbjct: 116 GRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHE 175

Query: 189 RNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
                +       +         EL A+SD +++   L   T HL+N ++ LAL + G +
Sbjct: 176 AKALDTQTEQRLGLR---QVACSELFASSDFILLALPLNADTLHLVNAEL-LALVRPGAL 231

Query: 242 -INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE--------PDVPEQLFALDNVVLSP 292
            +N  RG+++DE  ++  L RG++GG   DVFE E          +   L A  N + +P
Sbjct: 232 LVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTP 291

Query: 293 H--SAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
           H  SA        ++   A  N+    + +  +  
Sbjct: 292 HIGSA--VRAVRLEIERCAAQNILQALAGERPINA 324

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  231 bits (591), Expect = 2e-74
 Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 15/298 (5%)

Query: 37  QYLKAYESALPLHEFLTLHAHSVKA-----IFSSAGAPVTAEILRLLPEVRLVVATSAGL 91
           + L+  ++  P   F    A +        +       +   + R   +++ V   SAG+
Sbjct: 13  EQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPLLKTILARPTNQLKFVQVISAGV 72

Query: 92  NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFP 151
           +++ +   +  GV +AN   + ++ +++  L  ++ V+R   AA    R       A   
Sbjct: 73  DYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQ--WALPM 130

Query: 152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELA 207
             S L G+++ I G G IG  +A +  A G  V   +    P+     T  F     +  
Sbjct: 131 TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAF-TATADAL 189

Query: 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA 267
           A ++ ++    LT  THHL + ++     ++ ++IN+GRG  +D   ++  L   ++  A
Sbjct: 190 ATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMA 249

Query: 268 GLDVFENEPDVPEQ--LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
            LDV E EP +P    L+  D+V+++PH +         V  +  AN   F  +  L+
Sbjct: 250 ALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLV 306

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  233 bits (596), Expect = 2e-74
 Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 12/267 (4%)

Query: 64  SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALG 123
               A +T E +     ++L +    G +H+D+     R V +A      S  VA++ + 
Sbjct: 97  PFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM 156

Query: 124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
           +++ ++R    +  + R+G W I         L    VG V  G IG  V +RL  F   
Sbjct: 157 MILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVH 216

Query: 184 VSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG 236
           + Y  R++ P        +T+  +    ++    DV+ + C L  +T H+IN +  L L 
Sbjct: 217 LHYTDRHRLPESVEKELNLTW--HATREDMYPVCDVVTLNCPLHPETEHMINDE-TLKLF 273

Query: 237 KKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSPHS 294
           K+G  I+N  RG + D   +   L  G + G   DV+  +P   +     +    ++PH 
Sbjct: 274 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 333

Query: 295 AVFTPESFKDVCELAVANLEAFFSNKP 321
           +  T  +           LE FF  +P
Sbjct: 334 SGTTLTAQARYAAGTREILECFFEGRP 360

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  225 bits (577), Expect = 4e-72
 Identities = 102/325 (31%), Positives = 164/325 (50%), Gaps = 22/325 (6%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
           P+V +L K        L +              E  L    E L         I  S   
Sbjct: 3   PKVGVLLKMKREALEELKKYA----------DVEIILYPSGEELKGVIGRFDGIIVSPTT 52

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            +T E+L     ++++   SAG ++ID+ E  +RG+ +     + SE VA++ +GL+I++
Sbjct: 53  KITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 129 LRKLSAADCFVRQGLW----PINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV 184
           +RK+  AD F+R+G W     I   F     L GK+VGI+G+G+IG  +A+RL  FG  +
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKL 172

Query: 185 SYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI 241
            Y SR++K +V       Y D+ EL   SD++I+   LT  T+H+IN++  +   +   +
Sbjct: 173 YYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEE-RVKKLEGKYL 231

Query: 242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALD-NVVLSPHSAVFTPE 300
           +N+GRGA++DEK +   + +G++ G   DVFE EP    +LF  +   VL+PH A    E
Sbjct: 232 VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALE 291

Query: 301 SFKDVCELAVANLEAFFSNKPLLTP 325
           + +DV   AV NL      +     
Sbjct: 292 AQEDVGFRAVENLLKVLRGEVPEDL 316

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  220 bits (562), Expect = 2e-70
 Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 10/258 (3%)

Query: 66  AGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLL 125
           A A V  +   L    +++ A SAG++HIDV       V  +NAG  +S  VA++A  LL
Sbjct: 35  AEAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALL 93

Query: 126 IDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS 185
           +   + +   +  ++ G++         + L GK +GI+G G IG  VA   +AFG  V 
Sbjct: 94  LAHAKNILENNELMKAGIF----RQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVI 149

Query: 186 YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINV 244
             +R+              +L   SD ++I   LTD+T  ++N + LLA  +K + I+NV
Sbjct: 150 AYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSR-LLANARKNLTIVNV 208

Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKD 304
            R  ++ + +M+G L          DV+ NEP++ E    L N +LSPH A        D
Sbjct: 209 ARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITE--TNLRNAILSPHVAGGMSGEIMD 266

Query: 305 V-CELAVANLEAFFSNKP 321
           +  +LA  N+  FF  + 
Sbjct: 267 IAIQLAFENVRNFFEGEG 284

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  210 bits (536), Expect = 5e-66
 Identities = 64/295 (21%), Positives = 119/295 (40%), Gaps = 22/295 (7%)

Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGV 104
            L       A     +         AE L+ L +  +  +   + G+++ID+ + +  G 
Sbjct: 35  LLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGF 94

Query: 105 ALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV 164
            + N        +A++A      +LR+  A D  V +          +G ++  + VG+V
Sbjct: 95  QITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGREVRDQVVGVV 152

Query: 165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY--PFYPDVCELAANSDVLIICCALTDQ 222
           G G IG    + +E FG  V      + P +     +   + +L   +DV+ +       
Sbjct: 153 GTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPA 212

Query: 223 THHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP----- 276
             H+IN + + A  K+ V I+NV RG ++D   ++  L  G+I G  +DV+E E      
Sbjct: 213 NVHMINDESI-AKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNE 271

Query: 277 ---------DVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
                         L A  NV+++P +A +T  + +++   A  N       K  
Sbjct: 272 DWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA 326

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  209 bits (534), Expect = 1e-65
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 26/297 (8%)

Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRL-VVAT-SAGLNHIDVVECRRRGV 104
            L E     A     I S    P  A +   +    +  +   + G ++ID+   ++ G+
Sbjct: 33  FLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGI 92

Query: 105 ALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV 164
            L+N        +A++AL   + +LR +      ++ G +     F +G +LG + VG++
Sbjct: 93  RLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVM 151

Query: 165 GLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALT 220
           G G IG    K  + FG  V     Y  +   P   Y     + +L   SDV+ +     
Sbjct: 152 GTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV---SLEDLFKQSDVIDLHVPGI 208

Query: 221 DQTHHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP--- 276
           +Q  H+IN+     L K G  +IN  R  +ID + M+  L  G++ G G+D +E E    
Sbjct: 209 EQNTHIINEAAF-NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDL 267

Query: 277 -----------DVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL 322
                       + ++L  + NVVLSPH A +T  +  ++   ++ +L  F +    
Sbjct: 268 LNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  207 bits (529), Expect = 8e-65
 Identities = 78/335 (23%), Positives = 141/335 (42%), Gaps = 28/335 (8%)

Query: 12  PQVLLLRK---PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGA 68
           P V LL          +L +            A+  A    E      +           
Sbjct: 22  PLVALLDGRDCTVEMPILKDVATV--------AFCDAQSTQEIHEKVLNEAVGALMYHTI 73

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
            +T E L     +R++V   +G ++ID+      G+A+ N      E+ AD  L  ++++
Sbjct: 74  TLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNL 133

Query: 129 LRKLSAADCFVRQGLWPINAEFP-----LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
            R+ +     +R+G    + E         +++ G+ +GI+GLG +G  VA R +AFG  
Sbjct: 134 YRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFN 193

Query: 184 VSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK 237
           V +              +       + +L  +SD + + C L +  HHLIN    +   +
Sbjct: 194 VLFYDPYLSDGVERALGLQR--VSTLQDLLFHSDCVTLHCGLNEHNHHLINDF-TVKQMR 250

Query: 238 KGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPHS 294
           +G  ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L    N++ +PH+
Sbjct: 251 QGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHA 310

Query: 295 AVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAV 329
           A ++ ++  ++ E A   +    + +   +    V
Sbjct: 311 AWYSEQASIEMREEAAREIRRAITGRIPDSLKNCV 345

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  205 bits (524), Expect = 2e-64
 Identities = 62/317 (19%), Positives = 123/317 (38%), Gaps = 29/317 (9%)

Query: 28  EQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVV 85
           E       +  +K     L   E   + A    A+          + L +  +  V+ ++
Sbjct: 17  EACNKEFGYD-IKCVPDYLNTKETAEM-AAGFDAVILRGNCFANKQNLDIYKKLGVKYIL 74

Query: 86  ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
             +AG +HID    +  G  +A         +A+ A+   + +LR  +       +  + 
Sbjct: 75  TRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK 134

Query: 146 INAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV----SYNSRNKKPSVTYPFYP 201
           ++A F    ++    VG+VGLG IG   A+     G  V     +  +  +   T     
Sbjct: 135 VDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQV--- 190

Query: 202 DVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVGRGAIIDEKEMVGCLL 260
            + E+   SD++ I      +   ++ +  L    K G  ++N  RG ++D + ++  + 
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFL-KKMKDGAILVNCARGQLVDTEAVIEAVE 249

Query: 261 RGEIGGAGLDVFENEPD----------VPEQLFA-----LDNVVLSPHSAVFTPESFKDV 305
            G++GG G DV + E            +   LF         V+++PH   +T E+ K++
Sbjct: 250 SGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNM 309

Query: 306 CELAVANLEAFFSNKPL 322
            E++  NL+        
Sbjct: 310 VEVSYQNLKDLAETGDC 326

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  203 bits (519), Expect = 2e-63
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 64  SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYA 121
               A VTAE ++    ++L++    G +HID+      G+ +A     NV S  VA+  
Sbjct: 70  PFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVS--VAEDE 127

Query: 122 LGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFG 181
           L  ++ ++R        V +G W +         L GK +G VG G IG  + +RL+ FG
Sbjct: 128 LMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFG 187

Query: 182 CCVSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
           C + Y+ R +            +    D+ E+    DV++I   LT++T  + NK+ L+ 
Sbjct: 188 CNLLYHDRLQMAPELEKETGAKF--VEDLNEMLPKCDVIVINMPLTEKTRGMFNKE-LIG 244

Query: 235 LGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVLSP 292
             KKGV I+N  RGAI++ + +V  +  G IGG   DV++ +P   +     + N  ++P
Sbjct: 245 KLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTP 304

Query: 293 HSAVFTPESFKDVCELAVANLEAFFSNKP 321
           H++  T ++           LE +F  + 
Sbjct: 305 HTSGTTIDAQLRYAAGTKDMLERYFKGED 333

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  202 bits (517), Expect = 5e-63
 Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 26/274 (9%)

Query: 69  PVTAEILRLLPEVRLVVAT----SAGLNHIDVVECRRRGVALANA-GNVFSEDVADYALG 123
            VT ++L  LP+++++  T         HID+  C  +GV +    G+  +   A+    
Sbjct: 60  RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVA--PAELTWA 117

Query: 124 LLIDVLRKLSAADCFVRQGLW--------PINAEFPLGSKLGGKRVGIVGLGSIGSEVAK 175
           L++   R++      ++ G W         +   F +G  L G+ +GI G G IG  VA 
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177

Query: 176 RLEAFGCCVSYNSRNKKP----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV 231
              AFG  V    R        +  +        L   SDVL +   L D+T  +I    
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVA- 236

Query: 232 LLALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDN 287
            L   K     +N  R  +++E  MV  L RG  G A +DVFE EP        L  ++N
Sbjct: 237 DLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHT--LLRMEN 294

Query: 288 VVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP 321
            + +PH      ES++    +A  N+        
Sbjct: 295 CICTPHIGYVERESYEMYFGIAFQNILDILQGNV 328

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  194 bits (494), Expect = 2e-59
 Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 20/279 (7%)

Query: 64  SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRG--VALANA--GNVFSEDVAD 119
               A +T E +    +++LVV    G +HID+    + G  +++      NV S  VA+
Sbjct: 68  PFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAE 125

Query: 120 YALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEA 179
           + +  ++ ++R    A   +    W + A       + GK +  +G G IG  V +RL  
Sbjct: 126 HVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVP 185

Query: 180 FGCCV-SYNSRNKKP-----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL 233
           F      Y      P      V      ++ EL A +D++ +   L   T  LINK+ LL
Sbjct: 186 FNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKE-LL 244

Query: 234 ALGKKGV-IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNV--- 288
           +  KKG  ++N  RGAI   +++   L  G++ G G DV+  +P   +     + N    
Sbjct: 245 SKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGA 304

Query: 289 --VLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP 325
              ++PH +  T ++     +  V  LE+FF+ K    P
Sbjct: 305 GNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYRP 343

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  188 bits (480), Expect = 7e-58
 Identities = 74/262 (28%), Positives = 124/262 (47%), Gaps = 17/262 (6%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDV 128
                +L    ++    +T AG++ + +    RR   L N   +F   +++Y  G L+ +
Sbjct: 56  ARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSL 114

Query: 129 LRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS 188
           +R+L       +Q LW    +      L G+ + I+G GSIG  +A   + FG  V   S
Sbjct: 115 MRQLPLYREQQKQRLW----QSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS 170

Query: 189 RNKKP----SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244
           R+ +        Y   P + ++ A +DV++     T +THHL             ++ NV
Sbjct: 171 RSGRERAGFDQVYQL-PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNV 229

Query: 245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LFALDNVVLSPH-SAVFTPES 301
           GRG  I+E +++  L  G++G A LDVFE EP +P    L+   N++++PH SA   P+ 
Sbjct: 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYSFPD- 287

Query: 302 FKDVCELAVANLEAFFSNKPLL 323
             DV ++ V N   F   +PL 
Sbjct: 288 --DVAQIFVRNYIRFIDGQPLD 307

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  188 bits (479), Expect = 8e-58
 Identities = 87/260 (33%), Positives = 134/260 (51%), Gaps = 18/260 (6%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
            VT  ++   P+++++     GL++IDV   + +G+ + NA   +  S  VA+ A+GL+ 
Sbjct: 55  KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRS--VAELAVGLMF 112

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
            V RK++ AD  +R+G+W    +  +G +L GK +GI+G G IG +VAK   A G  +  
Sbjct: 113 SVARKIAFADRKMREGVW--AKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILL 170

Query: 187 N------SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                   R K+ +  +    D+  L   SDV+ I   L + T+HLIN++  L L KK  
Sbjct: 171 YDPYPNEERAKEVNGKFV---DLETLLKESDVVTIHVPLVESTYHLINEE-RLKLMKKTA 226

Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNVVLSPHSAVFT 298
            +IN  RG ++D   +V  L  G I GAGLDVFE EP   +  L   DNVVL+PH    T
Sbjct: 227 ILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286

Query: 299 PESFKDVCELAVANLEAFFS 318
            E+ +         +     
Sbjct: 287 VEAQERAGVEVAEKVVKILK 306

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  185 bits (471), Expect = 2e-56
 Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 17/263 (6%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
            VTA+++    ++++V     G++++D+    R+G+ + N   GN  S   A+   G+++
Sbjct: 78  KVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS--AAELTCGMIM 135

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
            + R++  A   ++ G W    +F +G++L GK +GI+GLG IG EVA R+++FG     
Sbjct: 136 CLARQIPQATASMKDGKWE-RKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIG 193

Query: 187 ------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                    +    V       + E+    D + +   L   T  L+N     A  KKGV
Sbjct: 194 YDPIISPEVSASFGVQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDN-TFAQCKKGV 249

Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299
            ++N  RG I+DE  ++  L  G+  GA LDVF  EP     L   +NV+  PH    T 
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTK 309

Query: 300 ESFKDVCELAVANLEAFFSNKPL 322
           E+     E            K L
Sbjct: 310 EAQSRCGEEIAVQFVDMVKGKSL 332

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  179 bits (457), Expect = 2e-54
 Identities = 63/267 (23%), Positives = 119/267 (44%), Gaps = 22/267 (8%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
            VT +++    +++++     GL++ID  E  +R + +  A   +  S    +  +GL+I
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDS--AVELTIGLMI 114

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
              RK+  +    + G++    +   G +L GK +GIVG G IG++V     A G  V  
Sbjct: 115 AAARKMYTSMALAKSGIFK---KI-EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLA 170

Query: 187 ------NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                   + +K +        + EL  NSDV+ +   ++     +I+      L K  V
Sbjct: 171 YDILDIREKAEKINAKAV---SLEELLKNSDVISLHVTVSKDAKPIIDYP-QFELMKDNV 226

Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---DVPEQLFALDNVVLSPHSAV 296
            I+N  R   ++ K ++  + +G++     DVF NEP   +   +L   + V+++ H   
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGA 286

Query: 297 FTPESFKDVCELAVANLEAFFSNKPLL 323
            T E+ K V E+   NL        ++
Sbjct: 287 QTKEAQKRVAEMTTQNLLNAMKELGMI 313

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  184 bits (469), Expect = 4e-54
 Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 17/262 (6%)

Query: 69  PVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLI 126
            V AE+L   P++++V     GL+++DV     RGV + NA   N+ S   A++AL LL+
Sbjct: 55  TVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHS--AAEHALALLL 112

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY 186
              R++ AAD  +R+  W   + F  G+++ GK VG+VGLG IG  VA+R+ AFG  V  
Sbjct: 113 AASRQIPAADASLREHTWK-RSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170

Query: 187 N------SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV 240
                  +R  +  +       + +L A +D + +    T +T  LI+K+  LA  K GV
Sbjct: 171 YDPYVSPARAAQLGIELL---SLDDLLARADFISVHLPKTPETAGLIDKE-ALAKTKPGV 226

Query: 241 -IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP 299
            I+N  RG ++DE  +   +  G +  AGLDVF  EP     LF L  VV++PH    T 
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTA 286

Query: 300 ESFKDVCELAVANLEAFFSNKP 321
           E+          ++    + + 
Sbjct: 287 EAQDRAGTDVAESVRLALAGEF 308

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  172 bits (439), Expect = 7e-52
 Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 19/298 (6%)

Query: 37  QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHI-- 94
            ++ A E ALP                 +       E+L     ++ V    AG++ I  
Sbjct: 17  WWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAG-RRLKAVFVLGAGVDAILS 75

Query: 95  ---DVVECRRRGVALANA-GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEF 150
                 E     + L           + +YA+  ++   R+         Q LW      
Sbjct: 76  KLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALW---KPL 132

Query: 151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK--PSVTYPFYPD-VCELA 207
           P  +      VGI+G G +G++VA+ L+A+G  +   SR++K  P V      + +    
Sbjct: 133 PEYT-REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFL 191

Query: 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA 267
             + VLI     T QT  +IN ++L  L     ++N+ RG  + E +++  L  G++ GA
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251

Query: 268 GLDVFENEPDVPEQ--LFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL 323
            LDVF  EP +P++  L+    V ++PH A  T     +  +     +      +P+ 
Sbjct: 252 MLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPVT 306

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  164 bits (417), Expect = 1e-47
 Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 20/236 (8%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           +T +++    ++  + A + G N +D+    +RG+ + NA   N  S  VA+  +G L+ 
Sbjct: 59  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGELLL 116

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-- 185
           +LR +  A+    +G+    A      +  GK++GI+G G IG+++    E+ G  V   
Sbjct: 117 LLRGVPEANAKAHRGVGNKLAA--GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 174

Query: 186 --YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-II 242
              N      +        + +L   SDV+ +       T +++  + + +L K G  +I
Sbjct: 175 DIENKLPLGNATQVQ---HLSDLLNMSDVVSLHVPENPSTKNMMGAKEI-SLMKPGSLLI 230

Query: 243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-----LFALDNVVLSPH 293
           N  RG ++D   +   L    + GA +DVF  EP          L   DNV+L+PH
Sbjct: 231 NASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  163 bits (414), Expect = 3e-47
 Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 14/233 (6%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           +T EI      +  V   S G N +++   R+RG+ + NA   N  S  VA+  +G +I 
Sbjct: 70  LTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRS--VAELVIGEIIM 127

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCV-SY 186
           ++R++         G W   A      ++ GK +GIVG G+IGS+V    E+ G  V  Y
Sbjct: 128 LMRRIFPRSVSAHAGGWEKTAI--GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYY 185

Query: 187 NSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV-IINVG 245
           ++ +K           + EL   SDV+ +    +  T  LI +  L    KKG  +IN  
Sbjct: 186 DTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKL-RKMKKGAFLINNA 244

Query: 246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-----LFALDNVVLSPH 293
           RG+ +D + +   L  G + GA +DVF  EP    +     L  L+NV+L+PH
Sbjct: 245 RGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  160 bits (408), Expect = 1e-46
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 30/237 (12%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           V   +L   P +  V   +AG +H+D    ++ G+  + A   N  +  V +Y    L+ 
Sbjct: 52  VNESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA--VVEYVFSALLM 108

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           +  +                     G  L  + +GIVG+G++GS +  RLEA G      
Sbjct: 109 LAERD--------------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148

Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALTD----QTHHLINKQVLLALGKKGVIIN 243
              +        +  + EL   +DVL     L      +T HL ++ ++  L    ++IN
Sbjct: 149 DPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
             RG ++D   ++  L  G+     LDV+E EPD+   L    ++  + H A +T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIG-TSHIAGYTLE 264

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  159 bits (403), Expect = 8e-46
 Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 30/237 (12%)

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA--GNVFSEDVADYALGLLID 127
           V+   L   P VR V   + G +H+D+      G+A ++A   N     V DY LG L+ 
Sbjct: 49  VSRAALAGSP-VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARG--VVDYVLGCLLA 105

Query: 128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN 187
           +                        G+ L  +  G+VG G +G  + + L   G  V   
Sbjct: 106 MAEVR--------------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC 145

Query: 188 SRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIIN 243
              ++       +  +  L A +DV+ +   L       T HL+++  L AL     ++N
Sbjct: 146 DPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPE 300
             RGA++D + +   L  G      LDV+E EP   +   A   ++ +PH A ++ E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLE 261

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 63.8 bits (155), Expect = 9e-12
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYPFYPDVCELAA 208
           + G  V ++GLG +G  VA++  A G  V   +R            +         +   
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212

Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG 247
           + DV I           ++   VL  +     +I++   
Sbjct: 213 DVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASK 246

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVS--YNSRNKKPSVTYPFYPDVCELAANSDVLIICC 217
            VG++G G+IG  +A+ LE  G  ++   + R +   +       + E       + +  
Sbjct: 2   LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKM----VRGIDEFLQREMDVAVEA 57

Query: 218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
           A          K  +L  G   ++++ G  A  D    V
Sbjct: 58  ASQQAVKDYAEK--ILKAGIDLIVLSTGAFADRDFLSRV 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.9
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.83
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.8
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.74
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.67
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.67
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.67
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.6
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.39
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.38
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.37
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.33
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.32
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.31
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.3
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.3
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.27
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.27
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.25
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.23
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.22
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.21
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.21
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.19
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.17
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.16
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.14
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.13
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.11
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.11
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.1
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.09
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.07
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.06
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.06
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.05
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.05
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.04
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.04
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.02
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.98
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.97
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.95
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.94
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.93
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.91
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.91
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.43
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.89
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.87
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.86
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.85
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.84
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.81
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.81
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.79
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.76
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.7
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.7
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.69
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.66
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.66
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.66
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.65
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.64
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.63
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.6
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.59
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.58
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.57
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.57
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.54
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.53
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.48
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.46
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.46
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.46
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.43
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.43
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.43
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.42
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.41
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.41
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.41
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.41
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.4
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.4
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.39
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.39
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.38
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.38
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.38
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.38
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.37
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.36
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.35
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.34
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.32
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.31
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.31
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.3
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.29
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.24
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.23
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.2
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.2
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.19
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.17
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.04
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.04
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.01
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.0
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.0
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.99
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.97
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.94
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.91
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.9
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.89
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.87
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.86
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.86
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.84
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.84
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.77
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.77
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.75
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.72
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.68
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.68
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.66
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.61
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.58
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.56
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.55
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.53
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.53
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.51
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.51
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.5
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.49
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.49
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.44
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.44
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.4
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.4
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.39
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.38
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.36
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.36
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.34
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.33
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.3
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.3
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.29
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.29
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.29
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.29
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.29
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.26
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.2
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.19
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.18
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.15
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.15
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.14
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.12
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.12
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.11
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.11
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.06
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.06
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.05
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.04
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.04
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.04
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.02
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.0
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.0
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.99
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.98
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.96
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.96
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.94
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.91
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.9
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.89
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.87
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.85
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.84
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.83
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.83
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.83
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.83
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.82
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.74
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.74
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.74
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.72
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.72
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.7
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.7
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.7
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.68
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.67
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.66
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.65
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.63
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.63
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.62
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.62
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.62
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.6
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.6
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.59
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.58
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.58
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.57
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.56
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.55
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.55
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.55
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.53
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.53
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.5
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.5
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.46
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.46
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.46
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.44
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.44
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.4
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.4
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.39
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.38
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.33
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.31
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.29
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.28
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.27
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.26
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.25
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.25
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.25
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.24
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.19
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.17
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.15
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.14
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.13
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.13
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.13
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.12
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.11
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.1
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.08
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.08
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.07
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.06
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.06
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.06
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.06
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.05
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.04
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.04
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.04
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.03
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.03
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.02
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.01
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.98
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.96
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.94
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.92
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.92
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.92
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.9
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.89
4had_A	350	Probable oxidoreductase protein; structural genomi	95.87
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.85
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.82
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.79
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.78
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.76
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.74
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.74
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.71
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.68
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.68
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.68
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.67
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.66
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.66
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.63
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.62
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.6
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.59
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.59
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.58
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.58
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.55
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.55
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.52
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.52
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.48
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.48
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.48
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.47
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.46
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.46
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.42
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.42
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.42
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.39
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.36
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.35
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.35
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.34
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.34
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.34
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.29
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.28
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.26
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.24
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.23
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.22
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.2
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.17
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.16
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.15
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.14
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.14
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.13
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.13
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.13
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.12
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.12
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.11
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.1
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.1
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.09
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.09
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.08
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.07
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.06
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.04
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.04
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.04
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.03
3on5_A	362	BH1974 protein; structural genomics, joint center	95.03
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.02
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.01
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.0
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	94.98
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.96
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.96
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	94.93
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.91
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.87
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	94.84
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.83
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.82
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.81
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.78
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	94.77
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.76
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.75
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.74
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.73
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.72
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.71
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	94.71
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.69
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.68
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.62
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.62
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.61
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.6
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.6
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.59
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.59
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.59
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.57
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	94.57
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	94.51
2csu_A	457	457AA long hypothetical protein; structural genomi	94.49
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.48
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.48
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	94.47
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	94.47
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.46
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.45
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	94.45
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.43
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.43
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.4
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.35
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	94.35
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.33
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.33
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.33
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	94.28
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.22
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.17
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	94.16
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.16
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.15
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.14
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.14
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.13
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.12
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.11
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.09
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.09
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.07
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.02
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	93.98
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.95
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.94
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.93
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	93.93
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.91
1lnq_A	336	MTHK channels, potassium channel related protein;	93.91
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	93.89
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.88
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	93.88
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.87
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	93.85
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	93.85
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.85
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	93.84
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.83
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	93.83
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.79
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.77
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	93.77
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.76
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	93.75
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.73
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.72
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.7
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.69
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	93.67
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	93.61
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.58
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.53
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.5
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.42

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=2e-75  Score=557.30  Aligned_cols=313  Identities=32%  Similarity=0.582  Sum_probs=255.2

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcC
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATS   88 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~   88 (330)
                      +|||+||++.+.  .+...+.  |++.|++..+.. ..+.++++.+. +++|++++++.+++++++++++|+||||++.|
T Consensus        28 ~~~~~vl~~~~~--~~~~~~~--L~~~~~v~~~~~-~~~~~~~~~~~-~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g  101 (340)
T 4dgs_A           28 NVKPDLLLVEPM--MPFVMDE--LQRNYSVHRLYQ-AADRPALEAAL-PSIRAVATGGGAGLSNEWMEKLPSLGIIAING  101 (340)
T ss_dssp             -----CEECSCC--CHHHHHT--HHHHSCCEETTC-GGGHHHHHHHG-GGCCEEEEETTTCBCHHHHHHCSSCCEEEEES
T ss_pred             CCCCEEEEECCC--CHHHHHH--HhcCCcEEEeCC-CCCHHHHHHHh-CCcEEEEEcCCCCCCHHHHhhCCCCEEEEECC
Confidence            689999999998  6777767  888898765322 22334555554 89999999887899999999999999999999


Q ss_pred             CCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecCh
Q 020160           89 AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS  168 (330)
Q Consensus        89 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~  168 (330)
                      +|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|.....++.+.+++||||||||+|+
T Consensus       102 ~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~  181 (340)
T 4dgs_A          102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQ  181 (340)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSH
T ss_pred             CCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCH
Confidence            99999999999999999999999999999999999999999999999999999999753224468899999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          169 IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       169 IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ||+.+|+++++|||+|++|++++....+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+
T Consensus       182 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~  261 (340)
T 4dgs_A          182 IGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN  261 (340)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCc
Confidence            99999999999999999999988765555556799999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      ++|+++|+++|++|+|+||+||||++||.+++|||++|||++|||+||+|.|+..++.+.+++||.+|++|+++.|+||
T Consensus       262 vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             -------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             ccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            9999999999999999999999999999888899999999999999999999999999999999999999999999986

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.9e-74  Score=551.53  Aligned_cols=315  Identities=26%  Similarity=0.446  Sum_probs=281.9

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccC-CCcceeEEc
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLL-PEVRLVVAT   87 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~   87 (330)
                      ++|||||++.+.  .+...+.  |++.|++...........+.+.+.++++|++++++..++++++++++ |+||||++.
T Consensus        26 ~~~~kvlv~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~  101 (345)
T 4g2n_A           26 HPIQKAFLCRRF--TPAIEAE--LRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL  101 (345)
T ss_dssp             -CCCEEEESSCC--CHHHHHH--HHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEES
T ss_pred             CCCCEEEEeCCC--CHHHHHH--HHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEc
Confidence            568999999988  5666766  88889875433222223344556678999999987789999999997 799999999


Q ss_pred             CCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEEec
Q 020160           88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGL  166 (330)
Q Consensus        88 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIiG~  166 (330)
                      |+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|.... ....|.+++||||||||+
T Consensus       102 ~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGl  181 (345)
T 4g2n_A          102 SVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGM  181 (345)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESC
T ss_pred             CCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999997532 123588999999999999


Q ss_pred             ChHHHHHHHHHHhCCCEEEEECCCCCCC---CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160          167 GSIGSEVAKRLEAFGCCVSYNSRNKKPS---VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       167 G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                      |+||+.+|+++++|||+|++||+++...   .+..+..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus       182 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN  261 (345)
T 4g2n_A          182 GRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVIN  261 (345)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEE
T ss_pred             ChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEE
Confidence            9999999999999999999999986431   2344456999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020160          244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL  323 (330)
Q Consensus       244 ~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~  323 (330)
                      +|||++||++||+++|++|+|+||+||||++||..++|||++|||++|||+||+|.++..++.+.+++||.+|++|+++.
T Consensus       262 ~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~  341 (345)
T 4g2n_A          262 ISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPD  341 (345)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred             CCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999965679999999999999999999999999999999999999999999


Q ss_pred             CCcc
Q 020160          324 TPFA  327 (330)
Q Consensus       324 ~~v~  327 (330)
                      |.|+
T Consensus       342 ~~V~  345 (345)
T 4g2n_A          342 NLIS  345 (345)
T ss_dssp             TBCC
T ss_pred             CCcC
Confidence            9874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=2.8e-72  Score=534.61  Aligned_cols=315  Identities=24%  Similarity=0.411  Sum_probs=281.8

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      ||||||++.+.  .+...+.  |++.++++..........+.+.+.++++|+++++...++++++++++|+||||++.|+
T Consensus         1 m~~kvlv~~~~--~~~~~~~--l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~   76 (330)
T 4e5n_A            1 MLPKLVITHRV--HEEILQL--LAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALK   76 (330)
T ss_dssp             CCCEEEECSCC--CHHHHHH--HTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSS
T ss_pred             CCCEEEEecCC--CHHHHHH--HHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCC
Confidence            68999999988  6767777  8888876542221111234455667899999997778999999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChH
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|..+.....|.+++|+||||||+|.|
T Consensus        77 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~I  156 (330)
T 4e5n_A           77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAI  156 (330)
T ss_dssp             CCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHH
T ss_pred             cccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHH
Confidence            99999999999999999999999999999999999999999999999999999997433234588999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      |+.+|+++++|||+|++|++++...     .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+
T Consensus       157 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  235 (330)
T 4e5n_A          157 GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP  235 (330)
T ss_dssp             HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCce-eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEEC
Confidence            9999999999999999999987331     1222 358999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHcCCceEEEEecCCCC-------CCC-CcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 020160          245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENE-------PDV-PEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAF  316 (330)
Q Consensus       245 ~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-------P~~-~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~  316 (330)
                      |||+++|+++|+++|++|+|+||+||||++|       |++ ++|||++|||++|||+||+|.++..++.+.+++||.+|
T Consensus       236 arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~  315 (330)
T 4e5n_A          236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQA  315 (330)
T ss_dssp             SCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999       965 45899999999999999999999999999999999999


Q ss_pred             HcCCCCCCCccCC
Q 020160          317 FSNKPLLTPFAAV  329 (330)
Q Consensus       317 ~~g~~~~~~v~~~  329 (330)
                      ++|+++.|.||..
T Consensus       316 ~~g~~~~~~vn~~  328 (330)
T 4e5n_A          316 LAGERPINAVNRL  328 (330)
T ss_dssp             HTTSCCTTBSSCC
T ss_pred             HcCCCCCCccCCC
Confidence            9999999999863

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=5.6e-73  Score=540.08  Aligned_cols=272  Identities=27%  Similarity=0.418  Sum_probs=250.5

Q ss_pred             cCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHH
Q 020160           56 AHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAA  135 (330)
Q Consensus        56 ~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~  135 (330)
                      ++++|+++++..+++++++++++|+||||++.|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++..+
T Consensus        40 l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~  119 (334)
T 3kb6_A           40 LKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRI  119 (334)
T ss_dssp             HHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccc
Confidence            35689999988889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--CCCCCCCHHHHhhcCCEE
Q 020160          136 DCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--TYPFYPDVCELAANSDVL  213 (330)
Q Consensus       136 ~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~ell~~aDvV  213 (330)
                      ++.+++|.|.... ...+.+++|+|+||||+|+||+.+|+++++|||+|++||++.....  ....+.++++++++||+|
T Consensus       120 ~~~~~~~~~~~~~-~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDiv  198 (334)
T 3kb6_A          120 EDRVKKLNFSQDS-EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVI  198 (334)
T ss_dssp             HHHHHTTCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEE
T ss_pred             ccccccccccccc-ccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEE
Confidence            9999999986542 2358899999999999999999999999999999999998765421  222357999999999999


Q ss_pred             EEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-c------------
Q 020160          214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-E------------  280 (330)
Q Consensus       214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~------------  280 (330)
                      ++|||+|++|++||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +            
T Consensus       199 slh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~  278 (334)
T 3kb6_A          199 SLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNL  278 (334)
T ss_dssp             EECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHH
T ss_pred             EEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999631 1            


Q ss_pred             ---ccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160          281 ---QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       281 ---~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                         +||++|||++|||+||+|.|++.++.+.+++||.+|++|+++...+|.
T Consensus       279 ~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~  329 (334)
T 3kb6_A          279 KILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNF  329 (334)
T ss_dssp             HHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGE
T ss_pred             cchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCc
Confidence               589999999999999999999999999999999999999987666554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=9.4e-71  Score=535.66  Aligned_cols=319  Identities=25%  Similarity=0.318  Sum_probs=275.6

Q ss_pred             cCCCCCCCCCeEEEecCCCCcccccchHhhhc-cCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCc
Q 020160            3 THHHFAVQFPQVLLLRKPSGFAMLGEQFFTSN-KFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEV   81 (330)
Q Consensus         3 ~~~~~~~~k~~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~L   81 (330)
                      ...+.+.+|+|||++.+.  .+...+.  |++ .|+.+.+.....+ .+.+.+.++++|++++++.+++++++++++|+|
T Consensus         7 ~~~~~~~~~~kIl~~~~i--~~~~~~~--l~~~g~~~v~~~~~~~~-~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~L   81 (416)
T 3k5p_A            7 ERLSLSRDRINVLLLEGI--SQTAVEY--FKSSGYTNVTHLPKALD-KADLIKAISSAHIIGIRSRTQLTEEIFAAANRL   81 (416)
T ss_dssp             -----CGGGSCEEECSCC--CHHHHHH--HHHTTCCCEEECSSCCC-HHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTC
T ss_pred             cccCCCCCCcEEEEECCC--CHHHHHH--HHHCCCcEEEECCCCCC-HHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCc
Confidence            355667778999999988  5666666  765 4623333433333 344556678999998888889999999999999


Q ss_pred             ceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceE
Q 020160           82 RLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRV  161 (330)
Q Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~v  161 (330)
                      |+|++.|+|+|+||+++|+++||.|+|+||+++++|||++++++|++.|++..+++.+++|.|.+..  ..+.+++|||+
T Consensus        82 k~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~gktv  159 (416)
T 3k5p_A           82 IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVRGKTL  159 (416)
T ss_dssp             CEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCSTTCEE
T ss_pred             EEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC--CCCccCCCCEE
Confidence            9999999999999999999999999999999999999999999999999999999999999997542  24789999999


Q ss_pred             EEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160          162 GIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV  240 (330)
Q Consensus       162 gIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai  240 (330)
                      ||||+|.||+.+|+++++|||+|++||+++.... +.....++++++++||+|++|+|++++|+++|+++.|+.||+|++
T Consensus       160 GIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gai  239 (416)
T 3k5p_A          160 GIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAF  239 (416)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEE
T ss_pred             EEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcE
Confidence            9999999999999999999999999999765432 233457999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHH
Q 020160          241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEA  315 (330)
Q Consensus       241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~  315 (330)
                      |||+|||++||++||+++|++|+|+||++|||++||.++     +|||++|||++|||+||+|.|+..++...+++||.+
T Consensus       240 lIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~  319 (416)
T 3k5p_A          240 LINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVE  319 (416)
T ss_dssp             EEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999764     489999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCccC
Q 020160          316 FFSNKPLLTPFAA  328 (330)
Q Consensus       316 ~~~g~~~~~~v~~  328 (330)
                      |++|+.+.+.||.
T Consensus       320 ~l~~g~~~~~Vn~  332 (416)
T 3k5p_A          320 YSDVGSTVGAVNF  332 (416)
T ss_dssp             HHHHCCCTTBSSS
T ss_pred             HHhhCCCCceeeC
Confidence            9999888888874

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=2e-69  Score=527.33  Aligned_cols=311  Identities=22%  Similarity=0.292  Sum_probs=268.2

Q ss_pred             CCCeEEEecCCCCcccccchHhhhcc-C-eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEc
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNK-F-QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVAT   87 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~   87 (330)
                      +|+|||++.+.  .+...+.  |++. | ++.. .....+. +.+.+.++++|++++++.+++++++++++|+||+|++.
T Consensus         3 ~~~kil~~~~~--~~~~~~~--l~~~~~~~v~~-~~~~~~~-~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~   76 (404)
T 1sc6_A            3 DKIKFLLVEGV--HQKALES--LRAAGYTNIEF-HKGALDD-EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAF   76 (404)
T ss_dssp             SSCCEEECSCC--CHHHHHH--HHHTTCCCEEE-CSSCCCH-HHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEEC
T ss_pred             CceEEEEeCCC--CHHHHHH--HHhCCCcEEEE-cCCCCCH-HHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEEC
Confidence            34689998876  4555555  6553 6 5543 3323333 44455678999999888889999999999999999999


Q ss_pred             CCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecC
Q 020160           88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLG  167 (330)
Q Consensus        88 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G  167 (330)
                      |+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.+++.+++|.|.+.  ...+.+++|||+||||+|
T Consensus        77 ~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~--~~~~~el~gktlGiIGlG  154 (404)
T 1sc6_A           77 AIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL--AAGSFEARGKKLGIIGYG  154 (404)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCS
T ss_pred             CcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc--CCCccccCCCEEEEEeEC
Confidence            999999999999999999999999999999999999999999999999999999999643  124789999999999999


Q ss_pred             hHHHHHHHHHHhCCCEEEEECCCCCCCCC-CCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          168 SIGSEVAKRLEAFGCCVSYNSRNKKPSVT-YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      +||+.+|+++++|||+|++||+++....+ .....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+||
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aR  234 (404)
T 1sc6_A          155 HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR  234 (404)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCC
Confidence            99999999999999999999997755433 33456899999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       247 g~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                      |+++|+++|+++|++|+++||+||||++||.+.     +|||++|||++|||+|++|.|+..++...+++|+.+|++|++
T Consensus       235 g~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~  314 (404)
T 1sc6_A          235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGS  314 (404)
T ss_dssp             SSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999752     489999999999999999999999999999999999999999


Q ss_pred             CCCCccC
Q 020160          322 LLTPFAA  328 (330)
Q Consensus       322 ~~~~v~~  328 (330)
                      +.|.||.
T Consensus       315 ~~~~vn~  321 (404)
T 1sc6_A          315 TLSAVNF  321 (404)
T ss_dssp             CTTBSSS
T ss_pred             Ccceecc
Confidence            9998883

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1.9e-69  Score=512.93  Aligned_cols=303  Identities=25%  Similarity=0.385  Sum_probs=266.3

Q ss_pred             CeEEEecCCCCcccccchHhh-hccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160           12 PQVLLLRKPSGFAMLGEQFFT-SNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG   90 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G   90 (330)
                      .|||++.+.  .+...+.  | ++.++-+.+.... + .+.+.+.++++|+++++.  ++++++++++|+||||++.|+|
T Consensus         6 mkili~~~~--~~~~~~~--L~~~~~p~~~~~~~~-~-~~~~~~~~~~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G   77 (324)
T 3hg7_A            6 RTLLLLSQD--NAHYERL--LKAAHLPHLRILRAD-N-QSDAEKLIGEAHILMAEP--ARAKPLLAKANKLSWFQSTYAG   77 (324)
T ss_dssp             EEEEEESTT--HHHHHHH--HHHSCCTTEEEEECS-S-HHHHHHHGGGCSEEEECH--HHHGGGGGGCTTCCEEEESSSC
T ss_pred             cEEEEecCC--CHHHHHH--HhhccCCCeEEEeCC-C-hhHHHHHhCCCEEEEECC--CCCHHHHhhCCCceEEEECCCC
Confidence            689999988  5666666  8 6666423322221 1 233455678999999853  5678899999999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHH
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIG  170 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG  170 (330)
                      +|+||+++++ +||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|...    .+.+++|+||||||+|.||
T Consensus        78 ~d~id~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIIGlG~IG  152 (324)
T 3hg7_A           78 VDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH----PYQGLKGRTLLILGTGSIG  152 (324)
T ss_dssp             CGGGSCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCEEEEECCSHHH
T ss_pred             CCccChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC----CCcccccceEEEEEECHHH
Confidence            9999999886 4999999999999999999999999999999999999999999643    3678999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEECCCCCCCCCC---CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          171 SEVAKRLEAFGCCVSYNSRNKKPSVTY---PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       171 ~~~A~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +.+|+++++|||+|++|++++......   ....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||
T Consensus       153 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG  232 (324)
T 3hg7_A          153 QHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRG  232 (324)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCG
T ss_pred             HHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCc
Confidence            999999999999999999987544322   22468999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 020160          248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF  326 (330)
Q Consensus       248 ~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  326 (330)
                      +++|+++|+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.+  .++.+.+++|+.+|++|+++.|.|
T Consensus       233 ~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V  310 (324)
T 3hg7_A          233 NAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKI  310 (324)
T ss_dssp             GGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred             hhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceE
Confidence            99999999999999999999999999999765 499999999999999999976  579999999999999999999999


Q ss_pred             cCC
Q 020160          327 AAV  329 (330)
Q Consensus       327 ~~~  329 (330)
                      |..
T Consensus       311 ~~~  313 (324)
T 3hg7_A          311 DFD  313 (324)
T ss_dssp             CCC
T ss_pred             Chh
Confidence            863

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2e-69  Score=518.23  Aligned_cols=294  Identities=25%  Similarity=0.372  Sum_probs=260.6

Q ss_pred             hhc-cCeEEEeccCCCChHHHHhhccCCceEEEEcCC--CCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEe
Q 020160           32 TSN-KFQYLKAYESALPLHEFLTLHAHSVKAIFSSAG--APVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN  108 (330)
Q Consensus        32 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~--~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  108 (330)
                      |++ .++++...+... ..+.+.+.++++|++++++.  .++++++++++|+||+|++.|+|+||||+++|+++||.|+|
T Consensus        36 L~~~g~ev~~~~~~~~-~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n  114 (351)
T 3jtm_A           36 LESQGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAE  114 (351)
T ss_dssp             HHHTTCEEEEESCCSS-TTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEE
T ss_pred             HHHCCCEEEEeCCCCC-CHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEE
Confidence            655 477655433322 23345667789999998653  46999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEEC
Q 020160          109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNS  188 (330)
Q Consensus       109 ~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~  188 (330)
                      +||+++.+||||++++||++.|++..+++.+++|.|........+.+++|+||||||+|+||+.+|+++++|||+|++|+
T Consensus       115 ~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~d  194 (351)
T 3jtm_A          115 VTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHD  194 (351)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEEC
T ss_pred             CCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeC
Confidence            99999999999999999999999999999999999964211123678999999999999999999999999999999999


Q ss_pred             CCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          189 RNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       189 ~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      +++...     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+
T Consensus       195 r~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~  274 (351)
T 3jtm_A          195 RLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGH  274 (351)
T ss_dssp             SSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred             CCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCC
Confidence            986432     134445689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC--CCCCc
Q 020160          264 IGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP--LLTPF  326 (330)
Q Consensus       264 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~--~~~~v  326 (330)
                      |+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++|+.+|++|++  +.|.|
T Consensus       275 i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~~~~~~i  340 (351)
T 3jtm_A          275 IGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYI  340 (351)
T ss_dssp             EEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEE
T ss_pred             ccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCceEE
Confidence            9999999999999765 489999999999999999999999999999999999999995  55554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5.6e-69  Score=510.17  Aligned_cols=304  Identities=21%  Similarity=0.329  Sum_probs=265.7

Q ss_pred             CeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHH-ccCCCcceeEEcCCC
Q 020160           12 PQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEIL-RLLPEVRLVVATSAG   90 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l-~~~~~Lk~I~~~~~G   90 (330)
                      +|||++.+.  .+...+.  |++.++.+.+.......    .+.++++|+++++. .++ ++++ +.+|+||||++.|+|
T Consensus         2 ~kil~~~~~--~~~~~~~--L~~~~~~~~~~~~~~~~----~~~~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G   71 (324)
T 3evt_A            2 SLVLMAQAT--KPEQLQQ--LQTTYPDWTFKDAAAVT----AADYDQIEVMYGNH-PLL-KTILARPTNQLKFVQVISAG   71 (324)
T ss_dssp             CEEEECSCC--CHHHHHH--HHHHCTTCEEEETTSCC----TTTGGGEEEEESCC-THH-HHHHHSTTCCCCEEECSSSC
T ss_pred             cEEEEecCC--CHHHHHH--HHhhCCCeEEecCCccC----hHHhCCcEEEEECC-cCh-HHHHHhhCCCceEEEECCcc
Confidence            579999988  5666666  77765311111111111    12346889998764 356 8999 789999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHH-HHHHHcCCCCCCCCCCCccccCCceEEEEecChH
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAA-DCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~-~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      +|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+ ++.+++|.|....   .+.+++|+||||||+|.|
T Consensus        72 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~---~~~~l~gktvGIiGlG~I  148 (324)
T 3evt_A           72 VDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM---TTSTLTGQQLLIYGTGQI  148 (324)
T ss_dssp             CTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS---CCCCSTTCEEEEECCSHH
T ss_pred             ccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC---CCccccCCeEEEECcCHH
Confidence            999999999999999999999999999999999999999999999 9999999996542   478999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCCCCC---CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPSVTYP---FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~~~~~---~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      |+.+|+++++|||+|++|++++.......   ...++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+||
T Consensus       149 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR  228 (324)
T 3evt_A          149 GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGR  228 (324)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSC
T ss_pred             HHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCC
Confidence            99999999999999999999876543221   245899999999999999999999999999999999999999999999


Q ss_pred             CcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCCC
Q 020160          247 GAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK-PLLT  324 (330)
Q Consensus       247 g~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~-~~~~  324 (330)
                      |+++|+++|+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++||.+|++|+ ++.|
T Consensus       229 G~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n  308 (324)
T 3evt_A          229 GPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRN  308 (324)
T ss_dssp             GGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSC
T ss_pred             ChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            999999999999999999999999999999765 59999999999999999999999999999999999999754 6789


Q ss_pred             CccC
Q 020160          325 PFAA  328 (330)
Q Consensus       325 ~v~~  328 (330)
                      .||.
T Consensus       309 ~V~~  312 (324)
T 3evt_A          309 QVDL  312 (324)
T ss_dssp             BCC-
T ss_pred             eECc
Confidence            8885

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=2.9e-68  Score=510.57  Aligned_cols=315  Identities=23%  Similarity=0.339  Sum_probs=271.1

Q ss_pred             CCCeEEEecCCCCccc-ccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEE-cCCCCCCHHHHccCCCcceeEEc
Q 020160           10 QFPQVLLLRKPSGFAM-LGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFS-SAGAPVTAEILRLLPEVRLVVAT   87 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~-~~~~~~~~~~l~~~~~Lk~I~~~   87 (330)
                      |..||+++........ +.....++ .+++..+.. .....+.+.+.++++|++++ +...++++++++++|+||+|++.
T Consensus         1 msmki~~~d~~~~~~~~~~~~~~l~-~~~v~~~~~-~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~   78 (352)
T 3gg9_A            1 MSLKIAVLDDYQDAVRKLDCFSLLQ-DHEVKVFNN-TVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQT   78 (352)
T ss_dssp             -CCEEEECCCTTCCGGGSGGGGGGT-TSEEEECCS-CCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEES
T ss_pred             CceEEEEEcCccccchhhhhhhhhc-CceEEEecC-CCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEe
Confidence            3468998876532211 11111143 377654333 22234445667789999998 56679999999999999999999


Q ss_pred             CCCC----CCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC--------CCCCccc
Q 020160           88 SAGL----NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA--------EFPLGSK  155 (330)
Q Consensus        88 ~~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~--------~~~~~~~  155 (330)
                      |+|+    |+||+++|+++||.|+|+||+ +++||||++++||++.|++..+++.+|+|.|....        ....+.+
T Consensus        79 g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~  157 (352)
T 3gg9_A           79 GRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRV  157 (352)
T ss_dssp             SCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCC
T ss_pred             CcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCcc
Confidence            9999    999999999999999999999 99999999999999999999999999999997532        1134789


Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|+||||||+|.||+.+|+++++|||+|++|+++....    .++....++++++++||+|++|+|++++|+++|+++.
T Consensus       158 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~  237 (352)
T 3gg9_A          158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD  237 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHH
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHH
Confidence            999999999999999999999999999999999875321    2444456999999999999999999999999999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAV  310 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~  310 (330)
                      |+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++. +|||++|||++|||+|++|.++..++.+.++
T Consensus       238 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~  317 (352)
T 3gg9_A          238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAF  317 (352)
T ss_dssp             HTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999764 5999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCccC
Q 020160          311 ANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       311 ~nl~~~~~g~~~~~~v~~  328 (330)
                      +||.+|++|++ .|.||+
T Consensus       318 ~ni~~~~~G~p-~~~Vn~  334 (352)
T 3gg9_A          318 QNILDILQGNV-DSVANP  334 (352)
T ss_dssp             HHHHHHHTTCC-TTBSCG
T ss_pred             HHHHHHHcCCC-CcccCH
Confidence            99999999986 488876

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=7.5e-68  Score=504.57  Aligned_cols=313  Identities=46%  Similarity=0.824  Sum_probs=281.3

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcC
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATS   88 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~   88 (330)
                      |+||+|+++.+.  .+...+.  |++.+++..+.. ..+.++++.+.++++|++++++..++++++++++|+||||++.|
T Consensus        21 m~~~~vl~~~~~--~~~~~~~--l~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~   95 (333)
T 3ba1_A           21 MEAIGVLMMCPM--STYLEQE--LDKRFKLFRYWT-QPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFS   95 (333)
T ss_dssp             -CCCEEEECSCC--CHHHHHH--HHHHSEEEEGGG-CSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESS
T ss_pred             CCCCEEEEeCCC--CHHHHHH--HHhcCCEEEecC-CCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcC
Confidence            446899998876  5555656  777788654322 22344556666789999998777789999999999999999999


Q ss_pred             CCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecCh
Q 020160           89 AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS  168 (330)
Q Consensus        89 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~  168 (330)
                      +|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|... ....+.+++|++|||||+|.
T Consensus        96 ~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~~l~g~~vgIIG~G~  174 (333)
T 3ba1_A           96 VGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFG-DFKLTTKFSGKRVGIIGLGR  174 (333)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC-CCCCCCCCTTCCEEEECCSH
T ss_pred             ccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc-ccccccccCCCEEEEECCCH
Confidence            99999999999999999999999999999999999999999999999999999999632 23357899999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          169 IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       169 IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ||+.+|++++++||+|++|++++....+.....++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.
T Consensus       175 iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~  254 (333)
T 3ba1_A          175 IGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGP  254 (333)
T ss_dssp             HHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGG
T ss_pred             HHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCc
Confidence            99999999999999999999987665454445689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          249 IIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      ++|+++|+++|++|+++||++|||++||.+.++||++|||++|||+|+.|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       255 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          255 HVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             GBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred             hhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999877899999999999999999999999999999999999999999999885

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=7.4e-69  Score=512.49  Aligned_cols=312  Identities=20%  Similarity=0.297  Sum_probs=264.7

Q ss_pred             CeEEEecCCCCcccccchHhhhc-cCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHH-HHccCC--CcceeEEc
Q 020160           12 PQVLLLRKPSGFAMLGEQFFTSN-KFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAE-ILRLLP--EVRLVVAT   87 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~l~~~~--~Lk~I~~~   87 (330)
                      .||++...........+. ++++ .+++.... ...+  +.+.+.++++|++++++..+++++ +++++|  +||+|++.
T Consensus         2 mki~~~~~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~--~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~   77 (343)
T 2yq5_A            2 TKIAMYNVSPIEVPYIED-WAKKNDVEIKTTD-QALT--SATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLR   77 (343)
T ss_dssp             CEEEEESCCGGGHHHHHH-HHHHHTCEEEEES-SCCS--TTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEES
T ss_pred             ceEEEEecCcccHHHHHH-HHHhCCeEEEECC-CCCC--HHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEEC
Confidence            578887743112223333 1222 45554332 2221  223456789999999877899999 999986  59999999


Q ss_pred             CCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHH-cCCCCCCCCCCCccccCCceEEEEec
Q 020160           88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVR-QGLWPINAEFPLGSKLGGKRVGIVGL  166 (330)
Q Consensus        88 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~-~g~W~~~~~~~~~~~l~g~~vgIiG~  166 (330)
                      |+|+|+||+++|+++||.|+|+||+++++||||+++++|++.|++..+++.+| +|.|.... ...+.+++|+||||||+
T Consensus        78 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~-~~~~~~l~gktvgIiGl  156 (343)
T 2yq5_A           78 IVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPS-NLISNEIYNLTVGLIGV  156 (343)
T ss_dssp             SSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCG-GGCBCCGGGSEEEEECC
T ss_pred             ceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCccccc-CCCccccCCCeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999 89874322 23588999999999999


Q ss_pred             ChHHHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          167 GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       167 G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      |.||+.+|+++++|||+|++|++++.... ....+.++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus       157 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  236 (343)
T 2yq5_A          157 GHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCA  236 (343)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred             CHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECC
Confidence            99999999999999999999999876422 12224589999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CC------------cccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160          246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VP------------EQLFALDNVVLSPHSAVFTPESFKDVCELAVA  311 (330)
Q Consensus       246 rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~------------~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~  311 (330)
                      ||++||+++|+++|++|+|+||+||||++||.  +.            +|||++|||++|||+|++|.++..++.+.+++
T Consensus       237 Rg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~  316 (343)
T 2yq5_A          237 RGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLT  316 (343)
T ss_dssp             CGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHH
T ss_pred             CChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999993  32            27999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCccC
Q 020160          312 NLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       312 nl~~~~~g~~~~~~v~~  328 (330)
                      ||.+|++|+++.|.|++
T Consensus       317 ni~~~l~g~~~~~~v~~  333 (343)
T 2yq5_A          317 DQLTIAKGGRPRSIVNL  333 (343)
T ss_dssp             HHHHHHTTCCCTTBC--
T ss_pred             HHHHHHcCCCCCceECC
Confidence            99999999999999986

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=2.7e-68  Score=511.96  Aligned_cols=295  Identities=20%  Similarity=0.307  Sum_probs=255.8

Q ss_pred             ccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEc-CCCCCCCChhHHhhcCc
Q 020160           26 LGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVAT-SAGLNHIDVVECRRRGV  104 (330)
Q Consensus        26 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~-~~G~d~id~~~~~~~gI  104 (330)
                      ..+.  |++.|+++...  ..+.++++.+.+.++++++.  ..++++++++++|+||+|++. |+|+|+||+++|+++||
T Consensus        48 ~~~~--L~~~~~v~~~~--~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI  121 (365)
T 4hy3_A           48 ARAA--LHSKYEIVEAD--PENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGI  121 (365)
T ss_dssp             HHHH--HHHHSEEEECC--GGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCC
T ss_pred             HHHH--HhCCcEEEECC--CCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCe
Confidence            4455  88889876421  11223333333456788775  368999999999999999975 89999999999999999


Q ss_pred             EEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEEecChHHHHHHHHHHhCCCE
Q 020160          105 ALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC  183 (330)
Q Consensus       105 ~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~  183 (330)
                      .|+|+||+++++||||+++++|++.|++..+++.+|+|+|.... ....+.+++|+||||||+|.||+.+|+++++|||+
T Consensus       122 ~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~  201 (365)
T 4hy3_A          122 HVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRAR  201 (365)
T ss_dssp             EEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCE
T ss_pred             EEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCE
Confidence            99999999999999999999999999999999999999953221 12357899999999999999999999999999999


Q ss_pred             EEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160          184 VSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCL  259 (330)
Q Consensus       184 V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL  259 (330)
                      |++||++....    .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|+++|
T Consensus       202 V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  280 (365)
T 4hy3_A          202 IRVFDPWLPRSMLEENGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAV  280 (365)
T ss_dssp             EEEECSSSCHHHHHHTTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHH
T ss_pred             EEEECCCCCHHHHhhcCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHH
Confidence            99999985432    1332 468999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160          260 LRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       260 ~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                      ++|+|+ |+||||++||++. +|||++|||++|||+||+|.|+..++.+.+++||.+|++|+++.+.|+.
T Consensus       281 ~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn~  349 (365)
T 4hy3_A          281 SSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPMRCKRA  349 (365)
T ss_dssp             HTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCCSSEEC
T ss_pred             HcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence            999998 9999999999764 5999999999999999999999999999999999999999999999874

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-67  Score=500.13  Aligned_cols=306  Identities=24%  Similarity=0.374  Sum_probs=263.2

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEc
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVAT   87 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~   87 (330)
                      ++++||+++.+.  .+...+.  +++. +++.. .. ..+ .+.+.+.++++|++++++..++++++++++|+||||++.
T Consensus        24 ~~~~~vli~~~~--~~~~~~~--l~~~~~~v~~-~~-~~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~   96 (335)
T 2g76_A           24 ANLRKVLISDSL--DPCCRKI--LQDGGLQVVE-KQ-NLS-KEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRA   96 (335)
T ss_dssp             --CCEEEECSCC--CHHHHHH--HHHHTCEEEE-CC-SCC-HHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEES
T ss_pred             ccceEEEEcCCC--CHHHHHH--HHhCCCEEEE-CC-CCC-HHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEEC
Confidence            344688888776  4554544  6554 55433 22 222 333455568999999987778999999999999999999


Q ss_pred             CCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecC
Q 020160           88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLG  167 (330)
Q Consensus        88 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G  167 (330)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|...  ...+.+++|+||||||+|
T Consensus        97 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~~~~l~g~tvgIIGlG  174 (335)
T 2g76_A           97 GTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLG  174 (335)
T ss_dssp             SSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTG--GGCBCCCTTCEEEEECCS
T ss_pred             CCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCcc--CCCCcCCCcCEEEEEeEC
Confidence            999999999999999999999999999999999999999999999999999999999643  124779999999999999


Q ss_pred             hHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160          168 SIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                      .||+.+|+++++|||+|++||++....    .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus       175 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  253 (335)
T 2g76_A          175 RIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVN  253 (335)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEE
Confidence            999999999999999999999976532    1332 35899999999999999999999999999999999999999999


Q ss_pred             cCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020160          244 VGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL  323 (330)
Q Consensus       244 ~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~  323 (330)
                      +|||+++|+++|+++|++|+|+||+||||+.||.++++||++||||+|||+|++|.++..++.+.+++|+.+|++|+++.
T Consensus       254 ~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~  333 (335)
T 2g76_A          254 CARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLT  333 (335)
T ss_dssp             CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999966679999999999999999999999999999999999999999887


Q ss_pred             C
Q 020160          324 T  324 (330)
Q Consensus       324 ~  324 (330)
                      |
T Consensus       334 n  334 (335)
T 2g76_A          334 G  334 (335)
T ss_dssp             -
T ss_pred             C
Confidence            6

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.4e-66  Score=495.89  Aligned_cols=311  Identities=20%  Similarity=0.327  Sum_probs=266.8

Q ss_pred             eEEEecCCCCcccccchHhhhccCeE-EEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCC--cceeEEcCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQY-LKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVVATSA   89 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~--Lk~I~~~~~   89 (330)
                      ||++.......+...+.  +.+.+.+ +.+.....+. +.+.+.++++|++++++..++++++++++|+  ||||++.|+
T Consensus         2 ki~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            2 KVLCYGVRDVELPIFEA--CNKEFGYDIKCVPDYLNT-KETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             EEEECSCCTTTHHHHHH--HGGGTCCEEEECSCCSCS-HHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             EEEEEecCccCHHHHHH--HHHhcCeEEEECCCCCCH-HHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            67776533223334444  5554432 2223222222 3345567899999998777899999999998  999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChH
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|.... ...+.+++|+||||||+|.|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~I  157 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRI  157 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCS-TTCCCCGGGSEEEEECCSHH
T ss_pred             cccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccc-CcCccCCCCCEEEEECcCHH
Confidence            99999999999999999999999999999999999999999999999999999995311 12478899999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      |+.+|+++++|||+|++|++++.... ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+
T Consensus       158 G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~  237 (331)
T 1xdw_A          158 GRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQ  237 (331)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGG
T ss_pred             HHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcc
Confidence            99999999999999999999875431 11224589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCCC--C--------Cc----ccccC-CceEEcCCCCCCCHHHHHHHHHHHHHHH
Q 020160          249 IIDEKEMVGCLLRGEIGGAGLDVFENEPD--V--------PE----QLFAL-DNVVLSPHSAVFTPESFKDVCELAVANL  313 (330)
Q Consensus       249 ~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~--------~~----~L~~~-~nvilTPHia~~t~~~~~~~~~~~~~nl  313 (330)
                      ++|+++|+++|++|+|+||+||||++||.  +        ++    |||++ |||++|||+|++|.++..++.+.+++|+
T Consensus       238 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl  317 (331)
T 1xdw_A          238 LVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNL  317 (331)
T ss_dssp             GBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999994  1        12    69999 9999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCcc
Q 020160          314 EAFFSNKPLLTPFA  327 (330)
Q Consensus       314 ~~~~~g~~~~~~v~  327 (330)
                      .+|++|+++.|.||
T Consensus       318 ~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          318 KDLAETGDCPNKIK  331 (331)
T ss_dssp             HHHHHHSCCTTBCC
T ss_pred             HHHHcCCCCCCCCC
Confidence            99999999998875

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=6e-67  Score=498.79  Aligned_cols=309  Identities=21%  Similarity=0.278  Sum_probs=266.1

Q ss_pred             eEEEecCCCCcccccchHhhhccC---eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCC--cceeEEc
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKF---QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVVAT   87 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~--Lk~I~~~   87 (330)
                      ||++.......+...+.  +++.+   ++.. +....+  +.+.+.++++|++++++..++++++++++|+  ||||++.
T Consensus         3 kil~~~~~~~~~~~~~~--l~~~~p~~~v~~-~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~   77 (333)
T 1j4a_A            3 KIFAYAIREDEKPFLKE--WEDAHKDVEVEY-TDKLLT--PETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLR   77 (333)
T ss_dssp             EEEECSCCGGGHHHHHH--HHHTCTTSEEEE-CSSCCC--TTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             EEEEEecCccCHHHHHH--HHhhCCCcEEEE-CCCCCc--HHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEEC
Confidence            68876544212333344  55544   5433 222111  2234556899999997767899999999998  9999999


Q ss_pred             CCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecC
Q 020160           88 SAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLG  167 (330)
Q Consensus        88 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G  167 (330)
                      |+|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|...  ...+.+++|+||||||+|
T Consensus        78 ~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIiG~G  155 (333)
T 1j4a_A           78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA--PTIGREVRDQVVGVVGTG  155 (333)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT--TCCBCCGGGSEEEEECCS
T ss_pred             CcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccC--CcccccCCCCEEEEEccC
Confidence            999999999999999999999999999999999999999999999999999999999532  234789999999999999


Q ss_pred             hHHHHHHHHHHhCCCEEEEECCCCCCC--CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          168 SIGSEVAKRLEAFGCCVSYNSRNKKPS--VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       168 ~IG~~~A~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .||+.+|+++++|||+|++|++++...  .......++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~a  235 (333)
T 1j4a_A          156 HIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS  235 (333)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECC
Confidence            999999999999999999999987532  112233489999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CC--------c----ccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160          246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VP--------E----QLFALDNVVLSPHSAVFTPESFKDVCELAVA  311 (330)
Q Consensus       246 rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~--------~----~L~~~~nvilTPHia~~t~~~~~~~~~~~~~  311 (330)
                      ||+++|+++|+++|++|+|+||+||||++||.  +.        +    +||++|||++|||+|++|.++..++.+.+++
T Consensus       236 rg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~  315 (333)
T 1j4a_A          236 RGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFD  315 (333)
T ss_dssp             CGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999993  21        2    5999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCccC
Q 020160          312 NLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       312 nl~~~~~g~~~~~~v~~  328 (330)
                      |+.+|++|+++.|.|+.
T Consensus       316 nl~~~~~g~~~~~~v~~  332 (333)
T 1j4a_A          316 NNLELVEGKEAETPVKV  332 (333)
T ss_dssp             HHHHHHTTCCCSSBCCC
T ss_pred             HHHHHHcCCCCCccccC
Confidence            99999999999998874

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.1e-65  Score=485.80  Aligned_cols=307  Identities=31%  Similarity=0.507  Sum_probs=271.2

Q ss_pred             CeEEEecCCCCcccccchHhhhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160           12 PQVLLLRKPSGFAMLGEQFFTSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG   90 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G   90 (330)
                      ||||++.+.  .+...+.  +++. +++........+ .+.+.+.++++|+++++...++++++++++|+||||++.|+|
T Consensus         1 ~~vl~~~~~--~~~~~~~--l~~~g~~v~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G   75 (311)
T 2cuk_A            1 MRVLVTRTL--PGKALDR--LRERGLEVEVHRGLFLP-KAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVG   75 (311)
T ss_dssp             CEEEESSCC--SSSTTHH--HHHTTCEEEECCSSCCC-HHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSC
T ss_pred             CEEEEeCCC--CHHHHHH--HHhcCCeEEEecCCCCC-HHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcC
Confidence            578887766  4555555  7766 776432222222 344455678999999876678999999999999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEEecChH
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      +|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|.... ....+.+++|++|||||+|.|
T Consensus        76 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~I  155 (311)
T 2cuk_A           76 VDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI  155 (311)
T ss_dssp             CTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHH
T ss_pred             ccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHH
Confidence            9999999999999999999999999999999999999999999999999999995321 112477899999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                      |+.+|+++++|||+|++|++++.... . ...++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||++
T Consensus       156 G~~~A~~l~~~G~~V~~~d~~~~~~~-~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~  233 (311)
T 2cuk_A          156 GQAVAKRALAFGMRVVYHARTPKPLP-Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL  233 (311)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCSSS-S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGG
T ss_pred             HHHHHHHHHHCCCEEEEECCCCcccc-c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCc
Confidence            99999999999999999999876543 2 356899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCceEEEEecCCCCCCC-CcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 020160          250 IDEKEMVGCLLRGEIGGAGLDVFENEPDV-PEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPF  326 (330)
Q Consensus       250 vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  326 (330)
                      +|+++|.++|+ |+|+||++|||++||.+ .++||++||+++|||++++|.++..++.+.+++|+.+|++|+++.|.|
T Consensus       234 vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          234 VDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             BCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred             cCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence            99999999999 99999999999999965 458999999999999999999999999999999999999999988876

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1e-66  Score=493.04  Aligned_cols=301  Identities=20%  Similarity=0.275  Sum_probs=258.9

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      |..||++..+....+...+.  +++.++.+.+......       ..+++|+++++.   .++++++. |+||||++.|+
T Consensus         2 ~~mkil~~~~~~~~~~~~~~--l~~~~p~~~~~~~~~~-------~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~a   68 (315)
T 3pp8_A            2 NAMEIIFYHPTFNAAWWVNA--LEKALPHARVREWKVG-------DNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGA   68 (315)
T ss_dssp             CCEEEEEECSSSCHHHHHHH--HHHHSTTEEEEECCTT-------CCSCCSEEEESS---CCHHHHTT-CCCSEEEESSS
T ss_pred             CceEEEEEcCCCchHHHHHH--HHHHCCCCEEEecCCC-------CccCcEEEEECC---CCHHHhCC-CCceEEEECCE
Confidence            44679988775222344555  7777743332211111       235899999874   58999999 99999999999


Q ss_pred             CCCCC-C-hhH---HhhcCcEEEeCCCCc-hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160           90 GLNHI-D-VVE---CRRRGVALANAGNVF-SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI  163 (330)
Q Consensus        90 G~d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI  163 (330)
                      |+|+| | +++   +.++||.|+|+++.+ +.+||||+++++|++.|++..+++.+++|.|...    .+.+++|+||||
T Consensus        69 G~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGI  144 (315)
T 3pp8_A           69 GVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL----PEYTREEFSVGI  144 (315)
T ss_dssp             CCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCCEEE
T ss_pred             ecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC----CCCCcCCCEEEE
Confidence            99999 7 887   778999999998764 7999999999999999999999999999999653    367899999999


Q ss_pred             EecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCC---CCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160          164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF---YPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV  240 (330)
Q Consensus       164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~---~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai  240 (330)
                      ||+|.||+.+|+++++|||+|++|++++....+...   ..++++++++||+|++|+|++++|+++|+++.|+.||+|++
T Consensus       145 iG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gai  224 (315)
T 3pp8_A          145 MGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAY  224 (315)
T ss_dssp             ECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEE
T ss_pred             EeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCE
Confidence            999999999999999999999999998765433321   25899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 020160          241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSN  319 (330)
Q Consensus       241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g  319 (330)
                      |||+|||++||+++|+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.+  .++.+.+++||.+|++|
T Consensus       225 lIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G  302 (315)
T 3pp8_A          225 VLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKG  302 (315)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHT
T ss_pred             EEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999765 599999999999999999985  57999999999999999


Q ss_pred             CCCCCCccCC
Q 020160          320 KPLLTPFAAV  329 (330)
Q Consensus       320 ~~~~~~v~~~  329 (330)
                      +++.|.||..
T Consensus       303 ~~~~~~V~~~  312 (315)
T 3pp8_A          303 EPVTGQVDRA  312 (315)
T ss_dssp             CCCCCBCCCC
T ss_pred             CCCCceECcc
Confidence            9999999864

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.3e-66  Score=504.57  Aligned_cols=279  Identities=22%  Similarity=0.362  Sum_probs=254.5

Q ss_pred             HhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHH
Q 020160           52 LTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL  129 (330)
Q Consensus        52 ~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~  129 (330)
                      +.+.++++|++++..  ..++++++++++|+||||++.|+|+||||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus        83 l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~  162 (393)
T 2nac_A           83 FERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLV  162 (393)
T ss_dssp             HHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHH
Confidence            445568999999853  357999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHH
Q 020160          130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVC  204 (330)
Q Consensus       130 R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~  204 (330)
                      |++..+++.+|+|.|........+.+++|+||||||+|.||+.+|+++++|||+|++|++++....     +.....+++
T Consensus       163 R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~  242 (393)
T 2nac_A          163 RNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATRE  242 (393)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHH
T ss_pred             hccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHH
Confidence            999999999999999532111236789999999999999999999999999999999999864321     333346899


Q ss_pred             HHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccc
Q 020160          205 ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLF  283 (330)
Q Consensus       205 ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~  283 (330)
                      +++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||.+. +|||
T Consensus       243 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~  322 (393)
T 2nac_A          243 DMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR  322 (393)
T ss_dssp             HHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGG
T ss_pred             HHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999754 5899


Q ss_pred             cCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccCCC
Q 020160          284 ALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAAVD  330 (330)
Q Consensus       284 ~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~~  330 (330)
                      ++|||++|||+|+.|.++..++.+.+++||++|++|+++.|.+.+||
T Consensus       323 ~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~~v~  369 (393)
T 2nac_A          323 TMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQ  369 (393)
T ss_dssp             TSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEE
T ss_pred             cCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeEecc
Confidence            99999999999999999999999999999999999999999887654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=9.7e-67  Score=497.29  Aligned_cols=276  Identities=24%  Similarity=0.394  Sum_probs=252.5

Q ss_pred             HhhccCCceEEEEcCCCCCCHHHHccCCC--cceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHH
Q 020160           52 LTLHAHSVKAIFSSAGAPVTAEILRLLPE--VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL  129 (330)
Q Consensus        52 ~~~~~~~~d~ii~~~~~~~~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~  129 (330)
                      +.+.++++|++++++..++++++++++|+  ||||++.|+|+|+||+++|+++||.|+|+||+++++||||++++||++.
T Consensus        38 ~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~  117 (333)
T 1dxy_A           38 TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLL  117 (333)
T ss_dssp             GGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHh
Confidence            34556899999998777899999999998  9999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhh
Q 020160          130 RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAA  208 (330)
Q Consensus       130 R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~  208 (330)
                      |++..+++.+|+|.|.... ...+.+++|+||||||+|.||+.+|+++++|||+|++|++++.... ....+.+++++++
T Consensus       118 R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~  196 (333)
T 1dxy_A          118 RNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK  196 (333)
T ss_dssp             TTHHHHHHHHHTTCHHHHT-CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHH
T ss_pred             hhHHHHHHHHHcCCccccc-CCCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHh
Confidence            9999999999999984201 1247899999999999999999999999999999999999875431 1122458999999


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC----------C
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD----------V  278 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~----------~  278 (330)
                      +||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||.          .
T Consensus       197 ~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~  276 (333)
T 1dxy_A          197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSF  276 (333)
T ss_dssp             HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSC
T ss_pred             cCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999993          1


Q ss_pred             C----cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccC
Q 020160          279 P----EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       279 ~----~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                      +    +|||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.|+.
T Consensus       277 ~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~  330 (333)
T 1dxy_A          277 KDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTG  330 (333)
T ss_dssp             CCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEECC
T ss_pred             CccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeCC
Confidence            2    3699999999999999999999999999999999999999999998875

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=9e-67  Score=502.83  Aligned_cols=313  Identities=21%  Similarity=0.275  Sum_probs=264.8

Q ss_pred             CCeEEEecCCCCcccccchHhhhc-cCeEEEeccCCCChHHHHhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEc
Q 020160           11 FPQVLLLRKPSGFAMLGEQFFTSN-KFQYLKAYESALPLHEFLTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVAT   87 (330)
Q Consensus        11 k~~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~   87 (330)
                      ||+||+....  .+...+.  +++ .+++..+.....+ .+.+.+.++++|++++..  ..++++++++++|+||||++.
T Consensus        17 ~~~vl~~d~~--~~~~~~~--l~~~~~~v~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~   91 (364)
T 2j6i_A           17 EEKLYGCTEN--KLGIANW--LKDQGHELITTSDKEGG-NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVA   91 (364)
T ss_dssp             CTTCTTBTTT--GGGCHHH--HHHTTCEEEEESCCSST-TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEES
T ss_pred             CceEEEecCc--cHHHHHH--HHhCCCEEEEcCCCCCC-HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEEC
Confidence            4666555554  3444444  554 4565443222112 233455668899999854  246899999999999999999


Q ss_pred             CCCCCCCChhHHhhc--CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEe
Q 020160           88 SAGLNHIDVVECRRR--GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVG  165 (330)
Q Consensus        88 ~~G~d~id~~~~~~~--gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG  165 (330)
                      |+|+|+||+++|+++  ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|........+.+++|+||||||
T Consensus        92 ~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG  171 (364)
T 2j6i_A           92 GVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIG  171 (364)
T ss_dssp             SSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEEC
T ss_pred             CcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEEC
Confidence            999999999999999  999999999999999999999999999999999999999999532111246789999999999


Q ss_pred             cChHHHHHHHHHHhCCCE-EEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          166 LGSIGSEVAKRLEAFGCC-VSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       166 ~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      +|+||+.+|+++++|||+ |++|++++...     .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|+
T Consensus       172 ~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  251 (364)
T 2j6i_A          172 AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGA  251 (364)
T ss_dssp             CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTE
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCC
Confidence            999999999999999997 99999876432     133334589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccC--C---ceEEcCCCCCCCHHHHHHHHHHHHHHH
Q 020160          240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFAL--D---NVVLSPHSAVFTPESFKDVCELAVANL  313 (330)
Q Consensus       240 ilIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~--~---nvilTPHia~~t~~~~~~~~~~~~~nl  313 (330)
                      +|||+|||+++|+++|+++|++|+|+||+||||++||++. +|||.+  |   ||++|||+|++|.++..++.+.+++|+
T Consensus       252 ~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl  331 (364)
T 2j6i_A          252 WLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNIL  331 (364)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999765 589999  9   999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCccC
Q 020160          314 EAFFSNKPLLTPFAA  328 (330)
Q Consensus       314 ~~~~~g~~~~~~v~~  328 (330)
                      .+|++|+++..++|.
T Consensus       332 ~~~~~g~~~~~~~n~  346 (364)
T 2j6i_A          332 ESFFTGKFDYRPQDI  346 (364)
T ss_dssp             HHHHTTCCCCCGGGE
T ss_pred             HHHHcCCCCCCCCce
Confidence            999999944444443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.9e-65  Score=484.77  Aligned_cols=309  Identities=24%  Similarity=0.384  Sum_probs=269.7

Q ss_pred             CeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCC-cceeEEcCCC
Q 020160           12 PQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPE-VRLVVATSAG   90 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~-Lk~I~~~~~G   90 (330)
                      +||++..+.  .+...+.  |++.+++...........+.+.+.++++|+++++...++++++++++|+ ||||++.|+|
T Consensus         2 ~~vl~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G   77 (320)
T 1gdh_A            2 KKILITWPL--PEAAMAR--ARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIG   77 (320)
T ss_dssp             CEEEESSCC--CHHHHHH--HHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSC
T ss_pred             cEEEEcCCC--CHHHHHH--HHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcc
Confidence            688888766  4555555  7777775432221111233445567899999987767899999999999 9999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEEecChH
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      +|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|.... ....+.+++|+||||||+|.|
T Consensus        78 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~I  157 (320)
T 1gdh_A           78 FDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSI  157 (320)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHH
T ss_pred             cccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHH
Confidence            9999999999999999999999999999999999999999999999999999995321 123477999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECC-CCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160          170 GSEVAKRLEAFGCCVSYNSR-NKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~-~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      |+.+|+++++|||+|++|++ ++...    .+.....++++++++||+|++|+|.+++|+++++++.|+.||+|++|||+
T Consensus       158 G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~  237 (320)
T 1gdh_A          158 GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNT  237 (320)
T ss_dssp             HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEEC
T ss_pred             HHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEEC
Confidence            99999999999999999999 76542    13333448999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 020160          245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLT  324 (330)
Q Consensus       245 ~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  324 (330)
                      |||+++|+++|.++|++|+|+||++|||+.||...++||++||||+|||++++|.++..++.+.+ +|+.+|++|+++.+
T Consensus       238 arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~  316 (320)
T 1gdh_A          238 ARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMS  316 (320)
T ss_dssp             SCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCT
T ss_pred             CCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCcc
Confidence            99999999999999999999999999999999555699999999999999999999999999999 99999999998765


Q ss_pred             C
Q 020160          325 P  325 (330)
Q Consensus       325 ~  325 (330)
                      .
T Consensus       317 ~  317 (320)
T 1gdh_A          317 Y  317 (320)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=2.4e-65  Score=489.65  Aligned_cols=316  Identities=24%  Similarity=0.355  Sum_probs=268.9

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcC
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATS   88 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~   88 (330)
                      +.||+|++++.... ....+.  ++..+++..+ +. ...+++..+...++|+++++...++++++++++|+||||++.|
T Consensus        19 ~~kp~i~~l~~~~~-~~~~~~--l~~~~~~~~~-~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~   93 (347)
T 1mx3_A           19 SHMPLVALLDGRDC-TVEMPI--LKDVATVAFC-DA-QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIG   93 (347)
T ss_dssp             --CCEEEESSCSCC-TTTHHH--HTTTCEEEEC-CC-SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESS
T ss_pred             CCCCEEEEEcCCcc-hhhHHH--hhccceEEec-CC-CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcc
Confidence            66899999976422 222334  7777776543 22 2223333332356788888777789999999999999999999


Q ss_pred             CCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC----CCCc-cccCCceEEE
Q 020160           89 AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE----FPLG-SKLGGKRVGI  163 (330)
Q Consensus        89 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~----~~~~-~~l~g~~vgI  163 (330)
                      +|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|.....    ...+ .+++|+||||
T Consensus        94 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGI  173 (347)
T 1mx3_A           94 SGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGI  173 (347)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEE
T ss_pred             cccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999953210    0112 6899999999


Q ss_pred             EecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      ||+|.||+.+|+++++|||+|++|+++.....    +.....++++++++||+|++|+|++++|+++|+++.|+.||+|+
T Consensus       174 IG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  253 (347)
T 1mx3_A          174 IGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGA  253 (347)
T ss_dssp             ECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTE
T ss_pred             EeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCC
Confidence            99999999999999999999999998765421    33334589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC--CcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020160          240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV--PEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFF  317 (330)
Q Consensus       240 ilIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~  317 (330)
                      +|||+|||+++|+++|+++|++|+|+||++|||+.||.+  .++||.+|||++|||+|++|.++..++.+.+++|+.+|+
T Consensus       254 ilIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~  333 (347)
T 1mx3_A          254 FLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAI  333 (347)
T ss_dssp             EEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999975  358999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccCC
Q 020160          318 SNKPLLTPFAAV  329 (330)
Q Consensus       318 ~g~~~~~~v~~~  329 (330)
                      +|+++.+..+.|
T Consensus       334 ~g~~~~~l~~~v  345 (347)
T 1mx3_A          334 TGRIPDSLKNCV  345 (347)
T ss_dssp             HSCTTTTCSSBC
T ss_pred             cCCCCcccCCCC
Confidence            999876444444

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-65  Score=481.99  Aligned_cols=300  Identities=30%  Similarity=0.452  Sum_probs=263.6

Q ss_pred             CCCeEEEecCCCCcccccchHhhhc-cCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSN-KFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATS   88 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~   88 (330)
                      ||+||+++.+.  .+...+.  +++ .+++.. . ...+ .+.+.+.++++|++++++..++++++++++|+||||++.|
T Consensus         2 ~~~~il~~~~~--~~~~~~~--l~~~~~~~~~-~-~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~   74 (307)
T 1wwk_A            2 KRMKVLVAAPL--HEKAIQV--LKDAGLEVIY-E-EYPD-EDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAG   74 (307)
T ss_dssp             --CEEEECSCC--CHHHHHH--HHHTTCEEEE-C-SSCC-HHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESS
T ss_pred             CceEEEEeCCC--CHHHHHH--HHhCCeEEEe-C-CCCC-HHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECC
Confidence            56789998876  4544544  655 455432 2 1222 3344556789999998766679999999999999999999


Q ss_pred             CCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecCh
Q 020160           89 AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGS  168 (330)
Q Consensus        89 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~  168 (330)
                      +|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.+|+|.|...  ...+.+++|+||||||+|.
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIiG~G~  152 (307)
T 1wwk_A           75 VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGR  152 (307)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTT--TCCBCCCTTCEEEEECCSH
T ss_pred             ccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc--CcCCcccCCceEEEEccCH
Confidence            99999999999999999999999999999999999999999999999999999999642  1247899999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160          169 IGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       169 IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      ||+.+|+++++|||+|++|++++...    .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+
T Consensus       153 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~  231 (307)
T 1wwk_A          153 IGYQVAKIANALGMNILLYDPYPNEERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINT  231 (307)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEEC
Confidence            99999999999999999999987541    2332 348999999999999999999999999999999999999999999


Q ss_pred             CCCcccCHHHHHHHHHcCCceEEEEecCCCCCCC-CcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Q 020160          245 GRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDV-PEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSN  319 (330)
Q Consensus       245 ~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g  319 (330)
                      |||+++|+++|+++|++|+|+||++|||++||.+ .++||++||+++|||++++|.++..++.+.+++|+.+|++|
T Consensus       232 arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          232 SRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             SCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999974 46999999999999999999999999999999999999986

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.2e-64  Score=479.17  Aligned_cols=298  Identities=22%  Similarity=0.329  Sum_probs=265.6

Q ss_pred             eEEEecCCCCcccccchHhhhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGL   91 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   91 (330)
                      ||+++.+.  .+...+.  |++. +++. + ....+. +.+.+.++++|++++++..++++++++++|+||||++.|+|+
T Consensus         7 kil~~~~~--~~~~~~~--l~~~~~~v~-~-~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   79 (313)
T 2ekl_A            7 KALITDPI--DEILIKT--LREKGIQVD-Y-MPEISK-EELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGL   79 (313)
T ss_dssp             EEEECSCC--CHHHHHH--HHHTTCEEE-E-CTTCCH-HHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCC
T ss_pred             EEEEECCC--CHHHHHH--HHhCCcEEE-e-CCCCCH-HHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCC
Confidence            68888776  4544555  6554 5543 2 222223 334556689999998766789999999999999999999999


Q ss_pred             CCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHH
Q 020160           92 NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGS  171 (330)
Q Consensus        92 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~  171 (330)
                      |+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+|+|.|..    ..+.+++|+||||||+|.||+
T Consensus        80 d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~----~~~~~l~g~~vgIIG~G~IG~  155 (313)
T 2ekl_A           80 DNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK----IEGLELAGKTIGIVGFGRIGT  155 (313)
T ss_dssp             TTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC----CCCCCCTTCEEEEESCSHHHH
T ss_pred             CccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC----CCCCCCCCCEEEEEeeCHHHH
Confidence            9999999999999999999999999999999999999999999999999999952    247789999999999999999


Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .+|+++++|||+|++|++++...    .+.. ..++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||
T Consensus       156 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg  234 (313)
T 2ekl_A          156 KVGIIANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA  234 (313)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCG
T ss_pred             HHHHHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCC
Confidence            99999999999999999987542    2333 348999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCceEEEEecCCCCCCCCc---ccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 020160          248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE---QLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPL  322 (330)
Q Consensus       248 ~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~  322 (330)
                      +++|+++|.++|++|+|+||++|||+.||.+++   +||++|||++|||+|++|.++..++.+.+++|+.+|++|+++
T Consensus       235 ~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             GGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999998877   899999999999999999999999999999999999999986

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.2e-64  Score=479.16  Aligned_cols=310  Identities=33%  Similarity=0.485  Sum_probs=274.2

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      ||||||++.+.  .+...+.  |++.+++.. +. ..+ .+.+.+.++++|++++++..++++++++++|+||||++.|+
T Consensus         1 m~~~il~~~~~--~~~~~~~--l~~~~~~~~-~~-~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~   73 (333)
T 2d0i_A            1 MRPKVGVLLKM--KREALEE--LKKYADVEI-IL-YPS-GEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSA   73 (333)
T ss_dssp             CCSEEEECSCC--CHHHHHH--HHTTSEEEE-CC-SCC-HHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSS
T ss_pred             CCcEEEEECCC--CHHHHHH--HHhcCCEEE-eC-CCC-HHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCc
Confidence            67899998876  4555555  777777543 32 222 33445556899999987777899999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCc----cccCCceEEEEe
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLG----SKLGGKRVGIVG  165 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~----~~l~g~~vgIiG  165 (330)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|........|    .+++|++|||||
T Consensus        74 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG  153 (333)
T 2d0i_A           74 GYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILG  153 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEEC
T ss_pred             ccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEc
Confidence            9999999999999999999999999999999999999999999999999999999531101235    789999999999


Q ss_pred             cChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEE
Q 020160          166 LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVI  241 (330)
Q Consensus       166 ~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gail  241 (330)
                      +|.||+.+|++++++|++|++|++++....    +.. ..++++++++||+|++|+|.+++|+++++++.++.||+| ++
T Consensus       154 ~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-il  231 (333)
T 2d0i_A          154 MGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YL  231 (333)
T ss_dssp             CSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EE
Confidence            999999999999999999999999876411    222 248999999999999999999999999999999999999 99


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCC-ceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 020160          242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALD-NVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK  320 (330)
Q Consensus       242 IN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~-nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~  320 (330)
                      ||+|||.++|+++|.++|++|+|+||++|||++||.+.++||++| ||++|||+|+.|.++..++.+.+++|+.+|++|+
T Consensus       232 in~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~  311 (333)
T 2d0i_A          232 VNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGE  311 (333)
T ss_dssp             EECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999997766999999 9999999999999999999999999999999999


Q ss_pred             CCCCCccC
Q 020160          321 PLLTPFAA  328 (330)
Q Consensus       321 ~~~~~v~~  328 (330)
                      ++.|.|+.
T Consensus       312 ~~~~~v~~  319 (333)
T 2d0i_A          312 VPEDLVNK  319 (333)
T ss_dssp             CCTTBSCT
T ss_pred             CCcCccCH
Confidence            99999886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.2e-63  Score=476.34  Aligned_cols=315  Identities=32%  Similarity=0.498  Sum_probs=275.1

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      ||+||++..+.  .+...+.  +++.+++...........+.+.+.++++|+++++...++++++++++|+||||++.|+
T Consensus         1 m~~~il~~~~~--~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~   76 (334)
T 2dbq_A            1 MKPKVFITREI--PEVGIKM--LEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAV   76 (334)
T ss_dssp             CCCEEEESSCC--CHHHHHH--HHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSS
T ss_pred             CCcEEEEecCC--CHHHHHH--HHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCc
Confidence            45889998766  4555555  7777776442221111234445567899999997767899999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCC----CC-CCCCCccccCCceEEEE
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP----IN-AEFPLGSKLGGKRVGIV  164 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~----~~-~~~~~~~~l~g~~vgIi  164 (330)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.    .. .....+.++.|++||||
T Consensus        77 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgII  156 (334)
T 2dbq_A           77 GYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII  156 (334)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEE
T ss_pred             ccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999995    11 11124778999999999


Q ss_pred             ecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcE
Q 020160          165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGV  240 (330)
Q Consensus       165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai  240 (330)
                      |+|.||+.+|++++++|++|++|++++...    .+.. ..++++++++||+|++|+|.+++|+++++++.++.||+|++
T Consensus       157 G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ai  235 (334)
T 2dbq_A          157 GLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAE-FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAI  235 (334)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCE
T ss_pred             ccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcc-cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcE
Confidence            999999999999999999999999987541    1222 35899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC
Q 020160          241 IINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNK  320 (330)
Q Consensus       241 lIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~  320 (330)
                      |||+|||.++|+++|.++|++|+++||++|||++||...++||++||||+|||+|+.|.++..++.+.+++|+.+|++|+
T Consensus       236 lIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~  315 (334)
T 2dbq_A          236 LINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGE  315 (334)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999944458999999999999999999999999999999999999999


Q ss_pred             CCCCCccCC
Q 020160          321 PLLTPFAAV  329 (330)
Q Consensus       321 ~~~~~v~~~  329 (330)
                      ++.|.|++.
T Consensus       316 ~~~~~v~~~  324 (334)
T 2dbq_A          316 IPPTLVNRE  324 (334)
T ss_dssp             CCTTBSCTT
T ss_pred             CCccccCHH
Confidence            999999863

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=6.4e-64  Score=480.61  Aligned_cols=314  Identities=27%  Similarity=0.387  Sum_probs=271.2

Q ss_pred             CCCeEEEecC-CCCcccccchHhhhccCeEEEeccCCCChHHHHhhccC-----CceEEEEc------CCCCCCHHHHcc
Q 020160           10 QFPQVLLLRK-PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAH-----SVKAIFSS------AGAPVTAEILRL   77 (330)
Q Consensus        10 ~k~~vl~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~ii~~------~~~~~~~~~l~~   77 (330)
                      +|||||++.+ ....+...+.  |++.+++..+ . ..+.++++. .++     ++|+++..      ...+++++++++
T Consensus         2 ~~~~vl~~~~~~~~~~~~~~~--l~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~   76 (348)
T 2w2k_A            2 PRPRVLLLGDPARHLDDLWSD--FQQKFEVIPA-N-LTTHDGFKQ-ALREKRYGDFEAIIKLAVENGTESYPWNADLISH   76 (348)
T ss_dssp             CCCEEEECSSCCSSCHHHHHH--HHHHSEEEEC-C-CCCHHHHHH-HHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTT
T ss_pred             CCcEEEEECCccccChHHHHH--HHhcceEEec-C-CCCHHHHHH-HhhhcccCCeEEEEEcccccccccCCCCHHHHHh
Confidence            4789999987 4222333444  7777886543 2 223344433 333     78988864      235899999999


Q ss_pred             CC-CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCC---CCCCC--CCC
Q 020160           78 LP-EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGL---WPINA--EFP  151 (330)
Q Consensus        78 ~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~---W~~~~--~~~  151 (330)
                      +| +||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.   |....  ...
T Consensus        77 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~  156 (348)
T 2w2k_A           77 LPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGK  156 (348)
T ss_dssp             SCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred             cccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccc
Confidence            98 6999999999999999999999999999999999999999999999999999999999999999   93210  013


Q ss_pred             CccccCCceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          152 LGSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+.+++|++|||||+|.||+.+|++++ +|||+|++||+++....     +.....++++++++||+|++|+|.+++|++
T Consensus       157 ~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          157 SAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             cCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            477899999999999999999999999 99999999999875421     333345899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHH
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDV  305 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~  305 (330)
                      +++++.++.||+|++|||+|||+++|+++|.++|++|+|.||++|||++||...++||++||||+|||+|+.|.++..++
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~  316 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEF  316 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999955558999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCccC
Q 020160          306 CELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       306 ~~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                      .+.+++||.+|++|+++.|.|+.
T Consensus       317 ~~~~~~ni~~~~~g~~~~~~v~~  339 (348)
T 2w2k_A          317 ERLTMTNIDRFLLQGKPLLTPAG  339 (348)
T ss_dssp             HHHHHHHHHHHHHTCCCCSSBCS
T ss_pred             HHHHHHHHHHHHcCCCCcceecc
Confidence            99999999999999999999885

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=5.4e-63  Score=471.10  Aligned_cols=315  Identities=26%  Similarity=0.390  Sum_probs=273.3

Q ss_pred             CCCCeEEEecCCCCcccccchHhhhcc--CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccC-CCcceeE
Q 020160            9 VQFPQVLLLRKPSGFAMLGEQFFTSNK--FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLL-PEVRLVV   85 (330)
Q Consensus         9 ~~k~~vl~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~   85 (330)
                      .||+|||++.+.  .+...+.  |++.  +++...........+.+.+.++++|++++++..++++++++++ |+||||+
T Consensus         6 ~~~~~il~~~~~--~~~~~~~--l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~   81 (330)
T 2gcg_A            6 VRLMKVFVTRRI--PAEGRVA--LARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS   81 (330)
T ss_dssp             -CCEEEEESSCC--CHHHHHH--HHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEE
T ss_pred             CCCCEEEEECCC--CHHHHHH--HHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEE
Confidence            456789888765  4555555  7665  6654322111112344455668999999877678999999999 9999999


Q ss_pred             EcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCCCccccCCceEEEE
Q 020160           86 ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-EFPLGSKLGGKRVGIV  164 (330)
Q Consensus        86 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~g~~vgIi  164 (330)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|.... ....+.+++|++||||
T Consensus        82 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgII  161 (330)
T 2gcg_A           82 TMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGII  161 (330)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEE
T ss_pred             ECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999996421 1234789999999999


Q ss_pred             ecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      |+|.||+.+|++++++|++|++|+++....     .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+
T Consensus       162 G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~ga  240 (330)
T 2gcg_A          162 GLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF-VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETA  240 (330)
T ss_dssp             CCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTC
T ss_pred             CcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCcee-CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCc
Confidence            999999999999999999999999876431     12332 389999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC-cccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 020160          240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP-EQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFS  318 (330)
Q Consensus       240 ilIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~  318 (330)
                      +|||+|||+++|+++|.++|++|++.||++|||++||.+. ++||++|||++|||+|+.|.++..++.+.+++|+.+|++
T Consensus       241 ilIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~  320 (330)
T 2gcg_A          241 VFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLR  320 (330)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999654 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCccC
Q 020160          319 NKPLLTPFAA  328 (330)
Q Consensus       319 g~~~~~~v~~  328 (330)
                      |+++.|.||.
T Consensus       321 g~~~~~~v~~  330 (330)
T 2gcg_A          321 GEPMPSELKL  330 (330)
T ss_dssp             TCCCTTEECC
T ss_pred             CCCCCCCCCC
Confidence            9999998874

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.8e-63  Score=468.96  Aligned_cols=292  Identities=22%  Similarity=0.266  Sum_probs=258.7

Q ss_pred             eEEEecCCCCcccccchHhhhcc-CeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNK-FQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGL   91 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   91 (330)
                      |||+..+.  .+...+.  |++. +++   .          .+.++++|+++++.   .+.++++++|+||||++.|+|+
T Consensus         2 ~il~~~~~--~~~~~~~--l~~~~~~v---~----------~~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~   61 (303)
T 1qp8_A            2 ELYVNFEL--PPEAEEE--LRKYFKIV---R----------GGDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGL   61 (303)
T ss_dssp             EEECCSCC--CHHHHHH--HHTTCEEE---C----------SSCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCC
T ss_pred             EEEEccCC--CHHHHHH--HHhcCCcc---c----------hhhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCc
Confidence            67777665  4555555  6554 332   1          12457899988764   4679999999999999999999


Q ss_pred             CCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHH
Q 020160           92 NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGS  171 (330)
Q Consensus        92 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~  171 (330)
                      |+||++++ ++||.|+|+||+++.+||||++++||++.|++..+++.+|+|.|...   ..+.+++|+|+||||+|.||+
T Consensus        62 d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~---~~~~~l~g~~vgIIG~G~IG~  137 (303)
T 1qp8_A           62 DHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGT  137 (303)
T ss_dssp             TTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---SCCCCCTTCEEEEESCSTHHH
T ss_pred             ccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC---CCCCCCCCCEEEEEccCHHHH
Confidence            99999985 79999999999999999999999999999999999999999999542   123579999999999999999


Q ss_pred             HHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                      .+|+++++|||+|++|++++. ..+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|
T Consensus       138 ~~A~~l~~~G~~V~~~dr~~~-~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd  216 (303)
T 1qp8_A          138 RVGKILAALGAQVRGFSRTPK-EGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLD  216 (303)
T ss_dssp             HHHHHHHHTTCEEEEECSSCC-CSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred             HHHHHHHHCCCEEEEECCCcc-ccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccC
Confidence            999999999999999999876 2233345689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCceEEEEecC-CCCCCCC-cccccCCceEEcCCCCCC--CHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          252 EKEMVGCLLRGEIGGAGLDVF-ENEPDVP-EQLFALDNVVLSPHSAVF--TPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       252 ~~aL~~aL~~g~i~ga~lDV~-~~EP~~~-~~L~~~~nvilTPHia~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      +++|+++|++|+|+||++||| ++||.+. ++||++|||++|||+||+  |.++..++.+.+++|+.+|++|+++.|.|+
T Consensus       217 ~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          217 RDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             HHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            999999999999999999999 8899764 589999999999999998  999999999999999999999999999998


Q ss_pred             CC
Q 020160          328 AV  329 (330)
Q Consensus       328 ~~  329 (330)
                      +.
T Consensus       297 ~~  298 (303)
T 1qp8_A          297 RE  298 (303)
T ss_dssp             GG
T ss_pred             HH
Confidence            64

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=1.3e-61  Score=466.53  Aligned_cols=278  Identities=22%  Similarity=0.305  Sum_probs=242.4

Q ss_pred             CeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCC
Q 020160           12 PQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGL   91 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   91 (330)
                      .|||+....+   ...+.  +++..++..+...... .    +.++++|++++++.+++++++++ .++||||++.|+|+
T Consensus         4 mkIl~~~~~p---~~~~~--~~~~~~v~~~~~~~~~-~----~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~   72 (381)
T 3oet_A            4 MKILVDENMP---YAREL--FSRLGEVKAVPGRPIP-V----EELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGT   72 (381)
T ss_dssp             CEEEEETTST---THHHH--HTTSSEEEEECC---C-H----HHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCC
T ss_pred             eEEEECCCCc---HHHHH--HhhCCcEEEeCCCCCC-H----HHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccc
Confidence            5899877662   23333  6666665443222122 1    23578999999887889999999 57799999999999


Q ss_pred             CCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHH
Q 020160           92 NHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGS  171 (330)
Q Consensus        92 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~  171 (330)
                      ||||+++|+++||.|+|+||+++.+||||+++++|++.|+.                    +.+++|+||||||+|+||+
T Consensus        73 D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~--------------------g~~l~gktvGIIGlG~IG~  132 (381)
T 3oet_A           73 DHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD--------------------GFSLRDRTIGIVGVGNVGS  132 (381)
T ss_dssp             TTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT--------------------TCCGGGCEEEEECCSHHHH
T ss_pred             cccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc--------------------CCccCCCEEEEEeECHHHH
Confidence            99999999999999999999999999999999999999862                    3468999999999999999


Q ss_pred             HHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCcc----ccccccHHHHhcCCCCcEEEEcCCC
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~----t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .+|+++++|||+|++||++...........++++++++||+|++|+|++++    |+++|+++.|+.||+|++|||+|||
T Consensus       133 ~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG  212 (381)
T 3oet_A          133 RLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG  212 (381)
T ss_dssp             HHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCC
Confidence            999999999999999998643322223467999999999999999999999    9999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 020160          248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKP  321 (330)
Q Consensus       248 ~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~  321 (330)
                      ++||+++|+++|++|+++||+||||++||+++++||.++ +++|||+||+|.|+..++...+++|+.+|+++.+
T Consensus       213 ~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999999998777899875 8999999999999999999999999999998754

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.3e-61  Score=452.94  Aligned_cols=254  Identities=29%  Similarity=0.381  Sum_probs=230.3

Q ss_pred             ccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHH
Q 020160           55 HAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSA  134 (330)
Q Consensus        55 ~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~  134 (330)
                      .++++|+++++. .++      ++|+||||++.|+|+|+||+++|++++|.++| +|.++.+||||++++||++.|++..
T Consensus        31 ~~~~ad~li~~~-~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~  102 (290)
T 3gvx_A           31 DYYDAEAQVIKD-RYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILE  102 (290)
T ss_dssp             SCCCCSEEEESS-CCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chhhhhhhhhhh-hhh------hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhh
Confidence            457899999843 332      78999999999999999999999987666666 4889999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEE
Q 020160          135 ADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLI  214 (330)
Q Consensus       135 ~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~  214 (330)
                      +++.+++|.|...   + ..+++|+||||||+|.||+.+|+++++|||+|++|++++..........++++++++||+|+
T Consensus       103 ~~~~~~~g~w~~~---~-~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~  178 (290)
T 3gvx_A          103 NNELMKAGIFRQS---P-TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVL  178 (290)
T ss_dssp             HHHHHHTTCCCCC---C-CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEE
T ss_pred             hhhHhhhcccccC---C-ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEE
Confidence            9999999999653   1 36799999999999999999999999999999999998766544444569999999999999


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCC
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHS  294 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHi  294 (330)
                      +|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||++||.  +|||++|||++|||+
T Consensus       179 l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHi  256 (290)
T 3gvx_A          179 IAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHV  256 (290)
T ss_dssp             ECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSC
T ss_pred             EEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccc
Confidence            999999999999999999999999999999999999999999999999999999999999997  899999999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHcCCCC
Q 020160          295 A-VFTPESFKDVCELAVANLEAFFSNKPL  322 (330)
Q Consensus       295 a-~~t~~~~~~~~~~~~~nl~~~~~g~~~  322 (330)
                      | ++|.++..++.+.+++||.+|++|+.-
T Consensus       257 ag~~t~e~~~~~~~~~~~ni~~~~~~~~~  285 (290)
T 3gvx_A          257 AGGMSGEIMDIAIQLAFENVRNFFEGEGH  285 (290)
T ss_dssp             SSCBTTBCCHHHHHHHHHHHHHHTC----
T ss_pred             cCCccchHHHHHHHHHHHHHHhhhcCCCc
Confidence            9 899999999999999999999999853

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=2.1e-60  Score=479.18  Aligned_cols=309  Identities=27%  Similarity=0.404  Sum_probs=274.9

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSA   89 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~   89 (330)
                      +|+|||++.+.  .+...+.  |++.+++.. .. ..+ .+.+.+.++++|++++++.+++++++++++|+||||++.|+
T Consensus         3 ~~~~vl~~~~~--~~~~~~~--l~~~~~v~~-~~-~~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~   75 (529)
T 1ygy_A            3 SLPVVLIADKL--APSTVAA--LGDQVEVRW-VD-GPD-RDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGV   75 (529)
T ss_dssp             CCCEEEECSSC--CGGGGTT--SCSSSEEEE-CC-TTS-HHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSS
T ss_pred             CCcEEEEeCCC--CHHHHHH--HhcCceEEE-cC-CCC-HHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            36789998876  4555555  776677543 22 222 33445567899999998778999999999999999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChH
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI  169 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~I  169 (330)
                      |+||||+++|+++||.|+|+|++|+.+||||++++||++.|+++.+++.+|+|.|.+.  ...|.+++|+|+||||+|.|
T Consensus        76 G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIIG~G~I  153 (529)
T 1ygy_A           76 GLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRI  153 (529)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG--GCCBCCCTTCEEEEECCSHH
T ss_pred             CcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCccc--CcCccccCCCEEEEEeeCHH
Confidence            9999999999999999999999999999999999999999999999999999999643  23478999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCCC----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          170 GSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       170 G~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      |+.+|++|+++|++|++||++....    .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|
T Consensus       154 G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~a  232 (529)
T 1ygy_A          154 GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA  232 (529)
T ss_dssp             HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             HHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEE-cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECC
Confidence            9999999999999999999876421    13332 389999999999999999999999999998999999999999999


Q ss_pred             CCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020160          246 RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLLTP  325 (330)
Q Consensus       246 rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  325 (330)
                      ||+++|+++|+++|++|+++||++|||+.||...++||+++|+++|||++++|.++.+++...+++|+.+|+.|+++.|.
T Consensus       233 rg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~  312 (529)
T 1ygy_A          233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDA  312 (529)
T ss_dssp             CTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999999999997777999999999999999999999999999999999999999998887


Q ss_pred             ccC
Q 020160          326 FAA  328 (330)
Q Consensus       326 v~~  328 (330)
                      |+.
T Consensus       313 v~~  315 (529)
T 1ygy_A          313 VNV  315 (529)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.2e-59  Score=447.95  Aligned_cols=278  Identities=22%  Similarity=0.291  Sum_probs=241.4

Q ss_pred             eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN   92 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   92 (330)
                      ||++....   +...+.  +++..++........     ..+.++++|++++++.+++++++++ +|+||||++.|+|+|
T Consensus         2 kil~~~~~---~~~~~~--~~~~~~v~~~~~~~~-----~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D   70 (380)
T 2o4c_A            2 RILADENI---PVVDAF--FADQGSIRRLPGRAI-----DRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTD   70 (380)
T ss_dssp             EEEEETTC---TTHHHH--HGGGSEEEEECGGGC-----STTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCST
T ss_pred             EEEEecCc---hHHHHH--HHhCCcEEEecCCcC-----ChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccc
Confidence            67777655   223333  555555433221111     1233578999999877889999999 899999999999999


Q ss_pred             CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHH
Q 020160           93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSE  172 (330)
Q Consensus        93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~  172 (330)
                      +||+++++++||.|+|+||+++.+||||+++++|++.|+.                    +.+++|+||||||+|+||+.
T Consensus        71 ~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~--------------------~~~l~g~tvGIIGlG~IG~~  130 (380)
T 2o4c_A           71 HLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR--------------------GADLAERTYGVVGAGQVGGR  130 (380)
T ss_dssp             TBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH--------------------TCCGGGCEEEEECCSHHHHH
T ss_pred             hhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh--------------------hcccCCCEEEEEeCCHHHHH
Confidence            9999999999999999999999999999999999999872                    24689999999999999999


Q ss_pred             HHHHHHhCCCEEEEECCCCCCC-CCCCCCCCHHHHhhcCCEEEEeccCCcc----ccccccHHHHhcCCCCcEEEEcCCC
Q 020160          173 VAKRLEAFGCCVSYNSRNKKPS-VTYPFYPDVCELAANSDVLIICCALTDQ----THHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       173 ~A~~l~~~G~~V~~~~~~~~~~-~~~~~~~~l~ell~~aDvV~l~~P~t~~----t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +|++|++|||+|++|++++... .+. ...++++++++||+|++|+|++++    |+++++++.|+.||+|++|||+|||
T Consensus       131 vA~~l~~~G~~V~~~d~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG  209 (380)
T 2o4c_A          131 LVEVLRGLGWKVLVCDPPRQAREPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG  209 (380)
T ss_dssp             HHHHHHHTTCEEEEECHHHHHHSTTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCG
T ss_pred             HHHHHHHCCCEEEEEcCChhhhccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCC
Confidence            9999999999999999865322 222 356899999999999999999999    9999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020160          248 AIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFSNKPLL  323 (330)
Q Consensus       248 ~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~  323 (330)
                      +++|+++|+++|++|+|.||+||||++||.++++|+. +||++|||+||+|.++..++.+.+++|+.+|++|++..
T Consensus       210 ~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~  284 (380)
T 2o4c_A          210 AVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERV  284 (380)
T ss_dssp             GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             cccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999977778887 49999999999999999999999999999999998643

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=4.6e-38  Score=311.59  Aligned_cols=224  Identities=17%  Similarity=0.180  Sum_probs=192.1

Q ss_pred             CCcceeE-EcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccC
Q 020160           79 PEVRLVV-ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLG  157 (330)
Q Consensus        79 ~~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~  157 (330)
                      |+++.|+ .+++|+|++  ++++++||.|+|++++++ +|||+       ++|++....+.+++| |.+.    .+.+++
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~~----~g~~L~  276 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKRA----TDVMIA  276 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHHH----HCCCCT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhhc----cccccC
Confidence            8899998 889999998  789999999999999999 99994       357776666666666 7421    366899


Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      |+++||||+|.||+.+|+++++|||+|+++++++...     .++. ..++++++++||+|++|+    .|+++|+++.|
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~-~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  351 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYR-VVTMEYAADKADIFVTAT----GNYHVINHDHM  351 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECS----SSSCSBCHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCE-eCCHHHHHhcCCEEEECC----CcccccCHHHH
Confidence            9999999999999999999999999999999987532     1332 458999999999999997    68899999999


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEEecCCCCCCC-CcccccC--CceEEcCCCC-CCCHH-HHHHHH
Q 020160          233 LALGKKGVIINVGRGAI-IDEKEMVGCLLRGEIGGAGLDVFENEPDV-PEQLFAL--DNVVLSPHSA-VFTPE-SFKDVC  306 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~-vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~L~~~--~nvilTPHia-~~t~~-~~~~~~  306 (330)
                      +.||+|++|||+|||++ ||+++| ++|++|+|+ +++|||   |++ .++||.+  |||++| |+| |++.+ ...++.
T Consensus       352 ~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a  425 (494)
T 3d64_A          352 KAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFT  425 (494)
T ss_dssp             HHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHH
T ss_pred             hhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHH
Confidence            99999999999999999 699999 999999997 556655   544 3589988  999999 999 66754 678889


Q ss_pred             HHHHHHHHHHHcCCCCCCCccC
Q 020160          307 ELAVANLEAFFSNKPLLTPFAA  328 (330)
Q Consensus       307 ~~~~~nl~~~~~g~~~~~~v~~  328 (330)
                      ..+++|+..|++|+++.|.|+.
T Consensus       426 ~~~~~ni~~~~~g~~~~n~V~~  447 (494)
T 3d64_A          426 NQTLAQIELFTRGGEYANKVYV  447 (494)
T ss_dssp             HHHHHHHHHHHHGGGSCSSEEE
T ss_pred             HHHHHHHHHHHcCCCCCCceee
Confidence            9999999999999999998853

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=1.5e-37  Score=306.78  Aligned_cols=227  Identities=16%  Similarity=0.186  Sum_probs=198.4

Q ss_pred             CCCcceeE-EcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCcccc
Q 020160           78 LPEVRLVV-ATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKL  156 (330)
Q Consensus        78 ~~~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l  156 (330)
                      +|+++.|+ .+++|+|++  ++++++||.++|++++++ +|||       +++|++....+.+++| |.+.    .+.++
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~----~~~~l  255 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRA----TDFLI  255 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHH----HCCCC
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhc----ccccc
Confidence            47899998 889999998  789999999999999999 9999       4568888888888888 8532    25679


Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .|++|||||+|.||+.+|+++++|||+|+++++++...     .++ ...++++++++||+|++|+    .|+++|+++.
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~  330 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIKLEH  330 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBCHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcCHHH
Confidence            99999999999999999999999999999999987531     233 2458999999999999994    7899999999


Q ss_pred             HhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCceEEEEecCCCCCCCCcccccC--CceEEcCCCC-CCCHH-HHHH
Q 020160          232 LLALGKKGVIINVGRGAI-IDEKEMVG--CLLRGEIGGAGLDVFENEPDVPEQLFAL--DNVVLSPHSA-VFTPE-SFKD  304 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~-vd~~aL~~--aL~~g~i~ga~lDV~~~EP~~~~~L~~~--~nvilTPHia-~~t~~-~~~~  304 (330)
                      |+.||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.++  .++||.+  |||++| |+| |++.+ ...+
T Consensus       331 l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e~~~~s  406 (479)
T 1v8b_A          331 LLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAFVMSFS  406 (479)
T ss_dssp             HTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHHHHHHH
T ss_pred             HhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCchhHHHH
Confidence            999999999999999999 99999999  99999998 9999995432  4588888  999999 999 67766 6778


Q ss_pred             HHHHHHHHHHHHHcCC--CCCCCccC
Q 020160          305 VCELAVANLEAFFSNK--PLLTPFAA  328 (330)
Q Consensus       305 ~~~~~~~nl~~~~~g~--~~~~~v~~  328 (330)
                      +...+++|+..|++|+  ++.|.|..
T Consensus       407 ~a~~~~~ni~~~~~g~~~~l~n~V~~  432 (479)
T 1v8b_A          407 FCNQTFAQLDLWQNKDTNKYENKVYL  432 (479)
T ss_dssp             HHHHHHHHHHHHHTTTSSSCCSSEEC
T ss_pred             HHHHHHHHHHHHHcCCCCcCCcceEe
Confidence            8899999999999999  88887654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=4.7e-29  Score=233.21  Aligned_cols=206  Identities=16%  Similarity=0.168  Sum_probs=159.2

Q ss_pred             CCeEEEecCCCCcccccchHhhhc-cCeEEEeccCCCC-------hHHHHhhccCCceEEEEc----------------C
Q 020160           11 FPQVLLLRKPSGFAMLGEQFFTSN-KFQYLKAYESALP-------LHEFLTLHAHSVKAIFSS----------------A   66 (330)
Q Consensus        11 k~~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~d~ii~~----------------~   66 (330)
                      +.||++++.........+.  |.+ .+++.....+...       ..+.+.+.++++|+++++                .
T Consensus         5 ~m~i~v~~~~~~~~~~~~~--L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            5 GKHVVIIGGDARQLEIIRK--LSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TCEEEEECBCHHHHHHHHH--HHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             CcEEEEECCCHHHHHHHHH--HHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            4578888654222333344  544 5676432211110       112234556789999985                2


Q ss_pred             CCCCCHHHHccCCCcceeEEcCCCCCCCCh-hHHhhcCcEEEeCC------CCchhhHHHHHHHHHHHHHhchHHHHHHH
Q 020160           67 GAPVTAEILRLLPEVRLVVATSAGLNHIDV-VECRRRGVALANAG------NVFSEDVADYALGLLIDVLRKLSAADCFV  139 (330)
Q Consensus        67 ~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~al~l~L~~~R~~~~~~~~~  139 (330)
                      ..++++++++.+|+||+|+   +|+|++|+ ++++++||.|+|++      ++++.+|||++++++|..           
T Consensus        83 ~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~-----------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH-----------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred             CccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh-----------
Confidence            3468999999999999997   89999998 89999999999998      889999999999998852           


Q ss_pred             HcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC--CCCHHHHhhcCCE
Q 020160          140 RQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF--YPDVCELAANSDV  212 (330)
Q Consensus       140 ~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~ell~~aDv  212 (330)
                                  .+.++.|+++||||+|.||+.+|++++++|++|+++++++.+.     .+...  ..++++++++||+
T Consensus       149 ------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDv  216 (293)
T 3d4o_A          149 ------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV  216 (293)
T ss_dssp             ------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSE
T ss_pred             ------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCE
Confidence                        1346899999999999999999999999999999999986431     12221  2478899999999


Q ss_pred             EEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       213 V~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                      |++|+|.     ++++++.++.||+++++||++||..
T Consensus       217 Vi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          217 CINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             EEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            9999996     6889999999999999999999754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=1.5e-26  Score=216.83  Aligned_cols=211  Identities=13%  Similarity=0.166  Sum_probs=152.9

Q ss_pred             CeEEEecCCCCcccccchHhhhc-cCeEEEeccCCCC-------hHHHHhhccCCceEEEEc----C----------CCC
Q 020160           12 PQVLLLRKPSGFAMLGEQFFTSN-KFQYLKAYESALP-------LHEFLTLHAHSVKAIFSS----A----------GAP   69 (330)
Q Consensus        12 ~~vl~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~d~ii~~----~----------~~~   69 (330)
                      .||+++..........+.  |.+ .+++.....++..       ..+.+.+.++++|+++.+    .          ..+
T Consensus         8 mki~v~~~~~~~~~~~~~--L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~~   85 (300)
T 2rir_A            8 LKIAVIGGDARQLEIIRK--LTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNEE   85 (300)
T ss_dssp             CEEEEESBCHHHHHHHHH--HHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSSC
T ss_pred             CEEEEECCCHHHHHHHHH--HHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccCC
Confidence            378888654212233333  544 5665432211111       111234456789999872    1          345


Q ss_pred             --CCHHHHccCCCcceeEEcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC
Q 020160           70 --VTAEILRLLPEVRLVVATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPI  146 (330)
Q Consensus        70 --~~~~~l~~~~~Lk~I~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~  146 (330)
                        +++++++.+|++|+|+   +|+|++| +++|+++||.|+|+|+.+  ++         ++.|+++..     +|.|..
T Consensus        86 ~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~  146 (300)
T 2rir_A           86 VVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIML  146 (300)
T ss_dssp             EECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHH
T ss_pred             ccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHH
Confidence              8899999999999998   8999999 999999999999999974  33         335666544     334521


Q ss_pred             CCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC--CCCHHHHhhcCCEEEEeccC
Q 020160          147 NAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF--YPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       147 ~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~--~~~l~ell~~aDvV~l~~P~  219 (330)
                      .. ...+.+++|+++||||+|.||+.+|++++++|++|+++++++...     .+...  ..++++++++||+|++|+|.
T Consensus       147 ~~-~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          147 AI-QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             HH-HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred             HH-HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence            10 113668999999999999999999999999999999999986431     12221  35788999999999999997


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                           ++++++.++.||+|+++||++||..
T Consensus       226 -----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          226 -----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             -----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             -----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence                 6889999999999999999999854

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.92  E-value=7.2e-27  Score=231.98  Aligned_cols=225  Identities=17%  Similarity=0.204  Sum_probs=178.9

Q ss_pred             CCccee-EEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccC
Q 020160           79 PEVRLV-VATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLG  157 (330)
Q Consensus        79 ~~Lk~I-~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~  157 (330)
                      ++++-+ ..+|+|+|++  .++.++||.++|+++++. +|||+.       +|++....+.+..+ |.+.    .+..+.
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r~----~~~~l~  273 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INRG----TDALIG  273 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHHH----HCCCCT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHhc----cCCCCC
Confidence            445544 4889999998  788899999999999999 999953       45554444444443 4221    133578


Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      |++|+|+|+|.||+.+|++++++|++|+++++++...     .++. ..+++++++++|+|+.|++    +.++++.+.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l  348 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHI  348 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHH
Confidence            9999999999999999999999999999999976532     2333 3578899999999999864    5568888999


Q ss_pred             hcCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCceEEEEecCCCCCCCC-cccccCCceE----EcCCCCCCCHHHHHHH
Q 020160          233 LALGKKGVIINVGRGAI-IDEKEMVG-CLLRGEIGGAGLDVFENEPDVP-EQLFALDNVV----LSPHSAVFTPESFKDV  305 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~-vd~~aL~~-aL~~g~i~ga~lDV~~~EP~~~-~~L~~~~nvi----lTPHia~~t~~~~~~~  305 (330)
                      +.||+|++++|+||+.. +|+++|.. +|++++|. +++|+|+.++... -.|+..+|++    +|||+++.+.++   +
T Consensus       349 ~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~  424 (494)
T 3ce6_A          349 KAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---F  424 (494)
T ss_dssp             HHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---H
T ss_pred             HhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---H
Confidence            99999999999999999 99999998 88888887 6689987644222 2477788998    999999988765   3


Q ss_pred             HHHHHHHHHHHHcCCCCCCCcc
Q 020160          306 CELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       306 ~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      .+.+.+++..|++|+++.+.|.
T Consensus       425 ~~qa~~ai~~~~~g~~~~~~V~  446 (494)
T 3ce6_A          425 ANQTIAQIELWTKNDEYDNEVY  446 (494)
T ss_dssp             HHHHHHHHHHHHTGGGCCSSEE
T ss_pred             HHHHHHHHHHHHcCCCCCCEEE
Confidence            7788999999999988777663

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.90  E-value=4.6e-24  Score=206.14  Aligned_cols=238  Identities=16%  Similarity=0.153  Sum_probs=176.4

Q ss_pred             CCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEE----------eCCCCchhhHHHHHHHHHH
Q 020160           57 HSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALA----------NAGNVFSEDVADYALGLLI  126 (330)
Q Consensus        57 ~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~al~l~L  126 (330)
                      +++|+|+. ...++++++....|+..++.....++|..+++++.++||.+.          |.|.++  ++||++..+++
T Consensus        66 ~~adii~~-vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~  142 (377)
T 2vhw_A           66 ADADLLLK-VKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAA  142 (377)
T ss_dssp             HHCSEEEC-SSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHH
T ss_pred             ccCCEEEE-eCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHH
Confidence            45787764 456778888888888778888888899999999999999997          556654  56699985555


Q ss_pred             HHH-hchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCC-
Q 020160          127 DVL-RKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYP-  198 (330)
Q Consensus       127 ~~~-R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~-  198 (330)
                      .+. |++.    ..+.|+|....  . ..++.|++++|+|+|.||+.+|+.++++|++|+++|+++...      .+.. 
T Consensus       143 ~~a~r~l~----~~~~g~~~~~~--~-~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~  215 (377)
T 2vhw_A          143 QVGAYHLM----RTQGGRGVLMG--G-VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI  215 (377)
T ss_dssp             HHHHHHTS----GGGTSCCCCTT--C-BTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHH----HhcCCCccccc--C-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee
Confidence            444 6662    33445542221  1 136899999999999999999999999999999999876431      1221 


Q ss_pred             -----CCCCHHHHhhcCCEEEEec--cCCccccccccHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHcCCceEEEE
Q 020160          199 -----FYPDVCELAANSDVLIICC--ALTDQTHHLINKQVLLALGKKGVIINVG--RGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       199 -----~~~~l~ell~~aDvV~l~~--P~t~~t~~li~~~~l~~mk~gailIN~~--rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                           ...+++++++++|+|+.++  |.+ ++.++++++.++.||+|+++||+|  +|+                     
T Consensus       216 ~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg---------------------  273 (377)
T 2vhw_A          216 HTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG---------------------  273 (377)
T ss_dssp             EEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC---------------------
T ss_pred             EeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC---------------------
Confidence                 1235778889999999976  554 788999999999999999999998  332                     


Q ss_pred             ecCCC-CCCC-CcccccCCceE--EcCCCCCCCHHHH---------HHHHHHHHHHHH-HHHcCCCCCCCcc
Q 020160          270 DVFEN-EPDV-PEQLFALDNVV--LSPHSAVFTPESF---------KDVCELAVANLE-AFFSNKPLLTPFA  327 (330)
Q Consensus       270 DV~~~-EP~~-~~~L~~~~nvi--lTPHia~~t~~~~---------~~~~~~~~~nl~-~~~~g~~~~~~v~  327 (330)
                       ||+. ||.+ +.++|..+||+  +|||+++.+....         ..+.+++.++.. .+.+++++.+.++
T Consensus       274 -v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~  344 (377)
T 2vhw_A          274 -CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLS  344 (377)
T ss_dssp             -SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEE
T ss_pred             -ccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEE
Confidence             7888 8864 44899999999  9999999987632         233444445543 4555666655554

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.83  E-value=2.2e-22  Score=196.28  Aligned_cols=155  Identities=19%  Similarity=0.210  Sum_probs=124.4

Q ss_pred             ccc-cCCceEEEEecChHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCE-EEEeccCCccccccccH
Q 020160          153 GSK-LGGKRVGIVGLGSIGSEVAKRLEA-FGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV-LIICCALTDQTHHLINK  229 (330)
Q Consensus       153 ~~~-l~g~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDv-V~l~~P~t~~t~~li~~  229 (330)
                      |.+ ++|+|+||+|+|+||+.+|+++++ |||+|++++++...... ....+++++++.+|. .++ +|+ ++|++ |+.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~-~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~  281 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYN-PDGLNADEVLKWKNEHGSV-KDF-PGATN-ITN  281 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEE-EEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccC-ccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence            556 999999999999999999999999 99999988543321100 011267777765553 223 576 57888 788


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCC--cccccCCceEEcCCC----C--------
Q 020160          230 QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVP--EQLFALDNVVLSPHS----A--------  295 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~--~~L~~~~nvilTPHi----a--------  295 (330)
                      +.|..||+ .+|||++||.+||+++ +++|+.+.|.+++     +||..+  .+||..+||++|||+    |        
T Consensus       282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E  354 (419)
T 1gtm_A          282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFE  354 (419)
T ss_dssp             HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHH
T ss_pred             HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeeh
Confidence            99999998 6999999999999999 6999999999887     899754  379999999999999    6        


Q ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHc
Q 020160          296 ---------VFTPESFKDVCELAVANLEAFFS  318 (330)
Q Consensus       296 ---------~~t~~~~~~~~~~~~~nl~~~~~  318 (330)
                               +.+.+...++.+.+.+|+.++++
T Consensus       355 ~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          355 WVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence                     45677788888888899988873

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.80  E-value=2e-20  Score=180.12  Aligned_cols=243  Identities=19%  Similarity=0.241  Sum_probs=160.9

Q ss_pred             ccCCceEEEEcCCCCCCHHHHccC-CCcceeEEcCCCCCCCChhHHhhcCcEEE---eCCCC-ch----hhHHHHHH--H
Q 020160           55 HAHSVKAIFSSAGAPVTAEILRLL-PEVRLVVATSAGLNHIDVVECRRRGVALA---NAGNV-FS----EDVADYAL--G  123 (330)
Q Consensus        55 ~~~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~al--~  123 (330)
                      .+ ++|+|+.. ..++.++ ++.+ |++++|+....+.|..+++++.++||.+.   +.+.. ..    .++++.+-  +
T Consensus        63 ~~-~ad~il~v-k~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~a  139 (369)
T 2eez_A           63 AW-GAEMVVKV-KEPLPEE-YGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMA  139 (369)
T ss_dssp             HT-TSSEEECS-SCCCGGG-GGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHH
T ss_pred             ee-cCCEEEEE-CCCCHHH-HhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHH
Confidence            44 78988854 3455444 6665 78999999999999999999999999997   44432 11    34555444  3


Q ss_pred             HHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCC
Q 020160          124 LLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTY  197 (330)
Q Consensus       124 l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~  197 (330)
                      .++++ +.+.....  .++.|..    . ..++.+++++|+|.|.||+.+|+.++.+|++|+++++++...      .+.
T Consensus       140 v~~a~-~~l~~~~~--g~~~~~~----~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~  211 (369)
T 2eez_A          140 PQVGA-QFLEKPKG--GRGVLLG----G-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG  211 (369)
T ss_dssp             HHHHH-HHTSGGGT--SCCCCTT----C-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHH-HHHHHhcC--CCceecC----C-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc
Confidence            33322 22221110  1122311    1 236899999999999999999999999999999999876421      121


Q ss_pred             C------CCCCHHHHhhcCCEEEEeccCCc-cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160          198 P------FYPDVCELAANSDVLIICCALTD-QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD  270 (330)
Q Consensus       198 ~------~~~~l~ell~~aDvV~l~~P~t~-~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD  270 (330)
                      .      ...+++++++++|+|+.+++.+. .+..++.++.++.||+|+++||+|-.             .|   |+ +|
T Consensus       212 ~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d  274 (369)
T 2eez_A          212 RVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VE  274 (369)
T ss_dssp             SEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------------
T ss_pred             eEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CC
Confidence            1      12356778899999999998765 57788899999999999999999831             12   44 99


Q ss_pred             cCCCCCCC-CcccccCCceE---------EcCCCCCC--CHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 020160          271 VFENEPDV-PEQLFALDNVV---------LSPHSAVF--TPESFKDVCELAVANLEAFFSNKPLLTPFA  327 (330)
Q Consensus       271 V~~~EP~~-~~~L~~~~nvi---------lTPHia~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  327 (330)
                      ++  ||.. +.+++..+|++         +|||+|+.  +.+....+.+++.+++..++.++.+.+.++
T Consensus       275 ~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~  341 (369)
T 2eez_A          275 TI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLN  341 (369)
T ss_dssp             -------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred             cc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence            98  5643 45788899999         88999885  467788899999999888888876666554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.74  E-value=1.4e-18  Score=169.10  Aligned_cols=185  Identities=16%  Similarity=0.191  Sum_probs=133.9

Q ss_pred             ceEEEEcCCCCCCHHHHccC-CCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHH--
Q 020160           59 VKAIFSSAGAPVTAEILRLL-PEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAA--  135 (330)
Q Consensus        59 ~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~--  135 (330)
                      +|+|+.. ..+ +++.++.+ |++++|+..+.|+|++|++++.++||.+.+     .++|+|++.++.|.+++.+...  
T Consensus        73 adiil~v-k~p-~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag  145 (401)
T 1x13_A           73 SEIILKV-NAP-LDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG  145 (401)
T ss_dssp             SSEEECS-SCC-CHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH
T ss_pred             CCeEEEe-CCC-CHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH
Confidence            8888864 333 56778886 789999999999999999999999999964     4555665555543333333322  


Q ss_pred             HHHHHcCCC--CCCC---CCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCC----
Q 020160          136 DCFVRQGLW--PINA---EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYP----  201 (330)
Q Consensus       136 ~~~~~~g~W--~~~~---~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~----  201 (330)
                      ...++.+.|  .+..   ....| ++.|++|+|+|+|.||..+++.++++|++|+++|+++...     .+.....    
T Consensus       146 ~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~  224 (401)
T 1x13_A          146 YRAIVEAAHEFGRFFTGQITAAG-KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFK  224 (401)
T ss_dssp             HHHHHHHHHHCSSCSSCEEETTE-EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC---
T ss_pred             HHHHHHHHHhcccccCCceeecc-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence            223333322  1110   00112 5889999999999999999999999999999999986531     1222111    


Q ss_pred             -----------------------CHHHHhhcCCEEEEe--ccCCccccccccHHHHhcCCCCcEEEEcC--CCcccCH
Q 020160          202 -----------------------DVCELAANSDVLIIC--CALTDQTHHLINKQVLLALGKKGVIINVG--RGAIIDE  252 (330)
Q Consensus       202 -----------------------~l~ell~~aDvV~l~--~P~t~~t~~li~~~~l~~mk~gailIN~~--rg~~vd~  252 (330)
                                             ++.++++++|+|+.+  +|.. .+..+++++.++.||+|+++||+|  ||+.+++
T Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          225 EEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             -----CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             ccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence                                   367888999999999  5543 366789999999999999999999  8887765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.72  E-value=1.2e-17  Score=162.50  Aligned_cols=179  Identities=15%  Similarity=0.236  Sum_probs=126.7

Q ss_pred             CceEEEEcCCCCCCHHHHccCCC----ccee-EEcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhc
Q 020160           58 SVKAIFSSAGAPVTAEILRLLPE----VRLV-VATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRK  131 (330)
Q Consensus        58 ~~d~ii~~~~~~~~~~~l~~~~~----Lk~I-~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~  131 (330)
                      +.+.|+=.+ ..++.-+-...|+    ++-+ =-+++|+..+. +.+..+.+|+|.|++.....+..|...+..-++...
T Consensus       122 ~p~~ilDdG-gdl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldg  200 (436)
T 3h9u_A          122 YPNMLLDDG-GDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDG  200 (436)
T ss_dssp             CCSEEEESS-SHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHH
T ss_pred             CCceEeccc-cHHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHH
Confidence            456666543 3344433344443    3332 44577776542 334557899999998755555444444333333222


Q ss_pred             hHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHH
Q 020160          132 LSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCEL  206 (330)
Q Consensus       132 ~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~el  206 (330)
                      +.      +.          .+.++.|+++||+|+|.||+.+|++|++||++|+++++++...     .++. ..+++++
T Consensus       201 i~------ra----------tg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~-~~sL~ea  263 (436)
T 3h9u_A          201 IK------RA----------TDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQ-VLLVEDV  263 (436)
T ss_dssp             HH------HH----------HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHH
T ss_pred             HH------Hh----------cCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCe-ecCHHHH
Confidence            21      11          1356899999999999999999999999999999999976432     1322 4589999


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-IDEKEMVGC  258 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~a  258 (330)
                      +++||+|++    ++.|+++|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       264 l~~ADVVil----t~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          264 VEEAHIFVT----TTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             TTTCSEEEE----CSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             HhhCCEEEE----CCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            999999996    457889999999999999999999999997 999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.67  E-value=2.9e-18  Score=166.90  Aligned_cols=209  Identities=21%  Similarity=0.274  Sum_probs=158.4

Q ss_pred             CCcceeEEcCCCCCCCChhHHh-----hcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCC-CCCCC
Q 020160           79 PEVRLVVATSAGLNHIDVVECR-----RRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPIN-AEFPL  152 (330)
Q Consensus        79 ~~Lk~I~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~  152 (330)
                      +.+++|...++|+|++++.++.     ++++.+++.+|.. .+++++.+..++.+.|++...... ..+.|... .....
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~-~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL-DEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc-hHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHH
Confidence            5688999999999999999887     8899999998874 689999999999999998765433 24455310 00001


Q ss_pred             c----cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC------CCCC--CCCCHHHHhhcCCEEEEeccC
Q 020160          153 G----SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS------VTYP--FYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       153 ~----~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~------~~~~--~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .    .++.|++++|||+|.||+.+++.++.+|+ +|++++|++.+.      .+..  ...++.+++.++|+|+.|+|.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            1    14789999999999999999999999999 999999986432      1221  134678889999999999864


Q ss_pred             CccccccccHHHHhc--CC----CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC-CCcccccCCceEE--
Q 020160          220 TDQTHHLINKQVLLA--LG----KKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD-VPEQLFALDNVVL--  290 (330)
Q Consensus       220 t~~t~~li~~~~l~~--mk----~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~-~~~~L~~~~nvil--  290 (330)
                      +   ..+++.+.++.  ||    ++.++||++                             +|. ..++++++|||++  
T Consensus       238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d  285 (404)
T 1gpj_A          238 P---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT  285 (404)
T ss_dssp             S---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred             C---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence            4   45677777776  42    456666665                             354 3567999999999  


Q ss_pred             cCCCCCCCHHHHH----------HHHHHHHHHHHHHHcCCC
Q 020160          291 SPHSAVFTPESFK----------DVCELAVANLEAFFSNKP  321 (330)
Q Consensus       291 TPHia~~t~~~~~----------~~~~~~~~nl~~~~~g~~  321 (330)
                      +||+++.+.++..          .+.+..++++..|+.+.+
T Consensus       286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998887654          566777888888887654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.67  E-value=1.1e-16  Score=155.77  Aligned_cols=152  Identities=14%  Similarity=0.153  Sum_probs=112.3

Q ss_pred             EEcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160           85 VATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI  163 (330)
Q Consensus        85 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI  163 (330)
                      =-+++|+-.+- +.......+++.|+.+    ++..+-+-......+.+......  .          .+.++.|||+||
T Consensus       189 EeTtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~R--a----------tg~~L~GKTVgV  252 (464)
T 3n58_A          189 EETTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGIRR--G----------TDVMMAGKVAVV  252 (464)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHHH--H----------HCCCCTTCEEEE
T ss_pred             eccccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHHH--h----------cCCcccCCEEEE
Confidence            34567765541 2222345688888754    55666555555444443332221  1          145689999999


Q ss_pred             EecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160          164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK  238 (330)
Q Consensus       164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g  238 (330)
                      +|+|.||+.+|+++++|||+|+++++++...     .++. ..++++++++||+|+++.    .|+++|+++.|+.||+|
T Consensus       253 IG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~-vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~G  327 (464)
T 3n58_A          253 CGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFE-VVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDM  327 (464)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTT
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCce-eccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCC
Confidence            9999999999999999999999998865321     1322 358999999999999853    57899999999999999


Q ss_pred             cEEEEcCCCcc-cCHHHHHH
Q 020160          239 GVIINVGRGAI-IDEKEMVG  257 (330)
Q Consensus       239 ailIN~~rg~~-vd~~aL~~  257 (330)
                      ++|||+|||.+ +|.++|.+
T Consensus       328 AILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          328 CIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEEEECSSSTTTBTCGGGTT
T ss_pred             eEEEEcCCCCcccCHHHHHh
Confidence            99999999998 99999974

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.67  E-value=1.5e-16  Score=153.93  Aligned_cols=191  Identities=16%  Similarity=0.219  Sum_probs=131.1

Q ss_pred             ccCCceEEEEcCCCCC----CHHHHccCC-CcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHH
Q 020160           55 HAHSVKAIFSSAGAPV----TAEILRLLP-EVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL  129 (330)
Q Consensus        55 ~~~~~d~ii~~~~~~~----~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~  129 (330)
                      .++++|+|+.. ..++    +++.++.++ .+++|+....+.|+.+++++.++||.+++. +...+.+++..+. +|+..
T Consensus        64 ~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~  140 (384)
T 1l7d_A           64 ALSQADVVWKV-QRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQ  140 (384)
T ss_dssp             HHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHH
T ss_pred             hhcCCCEEEEe-cCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHH
Confidence            45689998875 3465    788889886 589999999999999999999999999984 1112112222222 22222


Q ss_pred             hchHHHHHHHHcCCCCCCCCCC--C-c-cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCC
Q 020160          130 RKLSAADCFVRQGLWPINAEFP--L-G-SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFY  200 (330)
Q Consensus       130 R~~~~~~~~~~~g~W~~~~~~~--~-~-~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~  200 (330)
                      +.+ ..+..+..+.|.....++  + + .++.|++|+|+|+|.||..+++.++.+|++|+++|+++...     .+....
T Consensus       141 a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~  219 (384)
T 1l7d_A          141 SNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI  219 (384)
T ss_dssp             HHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred             HHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence            222 122233333231100001  1 1 36899999999999999999999999999999999986531     122111


Q ss_pred             ---C----------------C----------HHHHhhcCCEEEEec--cCCccccccccHHHHhcCCCCcEEEEcC--CC
Q 020160          201 ---P----------------D----------VCELAANSDVLIICC--ALTDQTHHLINKQVLLALGKKGVIINVG--RG  247 (330)
Q Consensus       201 ---~----------------~----------l~ell~~aDvV~l~~--P~t~~t~~li~~~~l~~mk~gailIN~~--rg  247 (330)
                         .                +          +.++++++|+|+.++  |..+ +.++++++.++.||+|+++||++  ||
T Consensus       220 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~g  298 (384)
T 1l7d_A          220 TVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAG  298 (384)
T ss_dssp             CC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGT
T ss_pred             eecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCC
Confidence               0                1          678889999999877  4432 45788999999999999999999  77


Q ss_pred             ccc
Q 020160          248 AII  250 (330)
Q Consensus       248 ~~v  250 (330)
                      +.+
T Consensus       299 g~~  301 (384)
T 1l7d_A          299 GNC  301 (384)
T ss_dssp             CSS
T ss_pred             CCe
Confidence            644

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.60  E-value=1.9e-15  Score=146.79  Aligned_cols=151  Identities=17%  Similarity=0.287  Sum_probs=107.2

Q ss_pred             EEcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEE
Q 020160           85 VATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGI  163 (330)
Q Consensus        85 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgI  163 (330)
                      =-+++|+-.+- +....+..|+|.|+.+....+.-|    ........+....  .|.          .+..+.|++++|
T Consensus       162 EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fD----n~yGt~~s~~~gi--~ra----------t~~~L~GktV~V  225 (435)
T 3gvp_A          162 EESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFD----NLYCCRESILDGL--KRT----------TDMMFGGKQVVV  225 (435)
T ss_dssp             ECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHH----THHHHHHHHHHHH--HHH----------HCCCCTTCEEEE
T ss_pred             eccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhh----hhhhhHHHHHHHH--HHh----------hCceecCCEEEE
Confidence            34567765542 223335679999987644443333    2222111111111  111          134689999999


Q ss_pred             EecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160          164 VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK  238 (330)
Q Consensus       164 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g  238 (330)
                      +|+|.||+.+|++|++||++|+++++++...     .++. ..++++++++||+|+++    +.|+++|+++.|+.||+|
T Consensus       226 iG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~-v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~g  300 (435)
T 3gvp_A          226 CGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFR-LVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNS  300 (435)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTT
T ss_pred             EeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCE-eccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCC
Confidence            9999999999999999999999999876321     1322 45899999999999994    567889999999999999


Q ss_pred             cEEEEcCCCcc-cCHHHHH
Q 020160          239 GVIINVGRGAI-IDEKEMV  256 (330)
Q Consensus       239 ailIN~~rg~~-vd~~aL~  256 (330)
                      +++||+|||.+ +|.++|.
T Consensus       301 ailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          301 CIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEEEECSSTTTTBTGGGGC
T ss_pred             cEEEEecCCCccCCHHHHH
Confidence            99999999998 7877764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.39  E-value=5.5e-13  Score=124.52  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      ++|||||+|.||..+|++|...|++|++|||+++...     +.....++.|+++.||+|++++|..+..+..+..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            5899999999999999999999999999999876532     34456799999999999999999988888888888999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       234 ~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      .++++.++|+++....-+...+.+.+.+..+.  .+|.
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            99999999999999999999999999998885  5663

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.38  E-value=2.6e-13  Score=126.96  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=96.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++||+||+|.||..+|++|...|++|++|||++.+.     .+.....++.|+++.||+|++|+|..+.++.++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            589999999999999999999999999999987542     2555678999999999999999999998887763  236


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      ++.+++|.++||+|..+.-+...+.+.+.+..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999998885  6774

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.37  E-value=1.2e-12  Score=122.96  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=92.8

Q ss_pred             HHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC--CC-----CCCCCCCCCHHHHh
Q 020160          136 DCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK--KP-----SVTYPFYPDVCELA  207 (330)
Q Consensus       136 ~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~--~~-----~~~~~~~~~l~ell  207 (330)
                      ++..+++.|..+..++.......++|||||+|.||..+|+.|...|+ +|.+||+++  ..     ..+.....++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            34567788866655554444556899999999999999999999999 999999973  21     12444567899999


Q ss_pred             hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC--CceEEEEe--cCCCCC
Q 020160          208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG--EIGGAGLD--VFENEP  276 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g--~i~ga~lD--V~~~EP  276 (330)
                      ++||+|++++|.....+-+  .+..+.++++.++||+++.......++.+.+.+.  .+.  .+|  |+..+|
T Consensus        82 ~~aDvVi~~vp~~~~~~~~--~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~--~vd~pv~g~~~  150 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALEVA--QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQ--YAAVAVMSAVK  150 (312)
T ss_dssp             HHCSEEEECSCTTTHHHHH--HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCE--EEEEEECSCST
T ss_pred             hcCCEEEEecCchhHHHHH--HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCe--EEeccccCCch
Confidence            9999999999987766533  6678889999999999999999999999988876  443  344  566444

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.36  E-value=5.3e-13  Score=124.88  Aligned_cols=115  Identities=16%  Similarity=0.106  Sum_probs=96.2

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      .+...++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++.+++++||+|++++|....++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            34667899999999999999999999999999999986532     1444467899999999999999998877887775


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD  270 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD  270 (330)
                      .+.+..+++|.++||++++...+..++.+.+.+..+.  .+|
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vd  124 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVK  124 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence            3345667899999999999999999999999887665  455

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.33  E-value=9.5e-13  Score=123.92  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=94.0

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ....++|||||+|.||+.+|+.|...|++|.+||+++...     .+.....++++++++||+|++++|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            3467899999999999999999999999999999986531     24444578999999999999999987777776643


Q ss_pred             -HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          230 -QVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       230 -~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       +.++.++++.++||++++...+.+.+.+.+.+..+.
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence             567789999999999999999999999999887665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.32  E-value=5.6e-12  Score=118.55  Aligned_cols=163  Identities=18%  Similarity=0.195  Sum_probs=104.8

Q ss_pred             HHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--CCCCCHHH-Hhh
Q 020160          139 VRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTY--PFYPDVCE-LAA  208 (330)
Q Consensus       139 ~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~e-ll~  208 (330)
                      +-.+.|..+ ..+...++..++|||||+|.||+.+|+.|+..|+  +|.+||+++...     .+.  ....++++ +++
T Consensus        15 ~~~~~~~~~-~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~   93 (314)
T 3ggo_A           15 VPRGSHMKN-IIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF   93 (314)
T ss_dssp             ---------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGG
T ss_pred             cccccCcCc-CCchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhc
Confidence            344556332 1222234556899999999999999999999999  999999986431     122  12457788 899


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---C-CCccccc
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---D-VPEQLFA  284 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP---~-~~~~L~~  284 (330)
                      +||+|++|+|... +..++ ++....+++++++++++..+....+++.+.+.. ++.+ +-=++..|-   . ....|+.
T Consensus        94 ~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~  169 (314)
T 3ggo_A           94 SPDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYE  169 (314)
T ss_dssp             CCSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTT
T ss_pred             cCCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhc
Confidence            9999999999764 44444 567778999999999988765556666666654 3322 123444432   1 1235888


Q ss_pred             CCceEEcCCCCCCCHHHHHHHHH
Q 020160          285 LDNVVLSPHSAVFTPESFKDVCE  307 (330)
Q Consensus       285 ~~nvilTPHia~~t~~~~~~~~~  307 (330)
                      ...+++||+ .+.+.+..+.+.+
T Consensus       170 g~~~il~~~-~~~~~~~~~~v~~  191 (314)
T 3ggo_A          170 GKKVILTPT-KKTDKKRLKLVKR  191 (314)
T ss_dssp             TCEEEECCC-TTSCHHHHHHHHH
T ss_pred             CCEEEEEeC-CCCCHHHHHHHHH
Confidence            889999998 3445555554433

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.31  E-value=2.1e-12  Score=120.97  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=93.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccc-
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLI-  227 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li-  227 (330)
                      ....-++|||||+|.||..+|+.|...|++|.+||+++...     .+.....++.+++++||+|++++|....++.++ 
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHh
Confidence            34556899999999999999999999999999999987642     244446789999999999999999877777665 


Q ss_pred             -cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          228 -NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       228 -~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       ..+.++.+++|.++||+++......+.+.+.+.+..+.
T Consensus        97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           97 DKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             STTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence             24567789999999999999988888999999877664

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.30  E-value=2.7e-12  Score=119.45  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .++|||||+|.||+.+|+.|...|++|.+||+++....     +.....+++++++ ||+|++++|..+.++.++ .+.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            46899999999999999999999999999999876532     4445678999999 999999999877777776 6778


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +.++++.++||+++......+.+.+.+.+..+.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            889999999999999998899999999876664

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.30  E-value=6.5e-12  Score=120.24  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=97.9

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-----CCCCCCCCCHHHHhhcC---CEEEEeccCCccccccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVTYPFYPDVCELAANS---DVLIICCALTDQTHHLI  227 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~~l~ell~~a---DvV~l~~P~t~~t~~li  227 (330)
                      +.+++|||||+|.||+.+|+.|...|++|.+||+++..     ..+.....+++++++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            56789999999999999999999999999999998653     12445567899999999   9999999987 777776


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                       .+.+..+++|.++||++++...+...+.+.+.+..+......|+..
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence             5678889999999999999999999999999988886544455544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.27  E-value=3.4e-12  Score=117.96  Aligned_cols=107  Identities=19%  Similarity=0.262  Sum_probs=91.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||+.+|+.|...|++|++|++++...     .+.....++++++++||+|++|+|....++.++.  .+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999987642     1444567899999999999999998777777662  456


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++.+++|.++||+++....+...+.+.+.+..+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7889999999999999998889999999887664

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.27  E-value=1.6e-11  Score=112.77  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=101.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCCC--CCCCHHHHhh-cCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTYP--FYPDVCELAA-NSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~~--~~~~l~ell~-~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++|||||+|.||+.+|+.|+..|+  +|+++++++...     .+..  ...++++.++ +||+|++++|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            589999999999999999999998  999999876431     1222  1347888899 999999999965 4455553


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC---C-CcccccCCceEEcCCCCCCCHHHHHH
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD---V-PEQLFALDNVVLSPHSAVFTPESFKD  304 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~-~~~L~~~~nvilTPHia~~t~~~~~~  304 (330)
                       +..+.+++++++++++++.....+.+.+.+.++.+.  .--++..|..   . ..+++...+++++||.++. .+..+.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~~~  156 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRLKL  156 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHHHH
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHHHH
Confidence             466779999999999998876667788888764221  1234444421   1 2257788889999997654 444433

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.25  E-value=3.7e-12  Score=117.73  Aligned_cols=107  Identities=19%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||..+|+.|...|++|.+|+|++....     +.....++++++++||+|++++|..+.++.++.  .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            5899999999999999999999999999999876432     344567899999999999999998777776652  356


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++.+++|.++||++++...+...+.+.+.+..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            7789999999999999998889999998876654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.22  E-value=3.4e-12  Score=119.02  Aligned_cols=109  Identities=20%  Similarity=0.173  Sum_probs=90.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC-CCCHHHHhhcCCEEEEeccCCcccccccc--
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF-YPDVCELAANSDVLIICCALTDQTHHLIN--  228 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~--  228 (330)
                      ..++|||||+|.||..+|+.|...|++|.+||+++...     .+... ..++++++++||+|++++|..+.++.++.  
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            34789999999999999999999999999999986532     23333 56888999999999999998777776652  


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++.++.++++.++||+++........+.+.+.+..+.
T Consensus        86 ~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            4566789999999999999988888999999886654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.21  E-value=4.2e-11  Score=111.53  Aligned_cols=136  Identities=19%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             HHHHHHHcCCCCCCCCCCCccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCE
Q 020160          134 AADCFVRQGLWPINAEFPLGSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDV  212 (330)
Q Consensus       134 ~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDv  212 (330)
                      +++..+++..|...  .+     ..++||||| +|.||+.+|+.|+..|++|.++++++.        .+..+.+++||+
T Consensus         4 ~~~~~~~~~~~~~~--~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~--------~~~~~~~~~aDv   68 (298)
T 2pv7_A            4 ESYANENQFGFKTI--NS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADV   68 (298)
T ss_dssp             ---------CCCCS--CT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSE
T ss_pred             hHHhhhhccCcccc--CC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc--------cCHHHHhcCCCE
Confidence            44556667778532  11     356899999 999999999999999999999998653        257788999999


Q ss_pred             EEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCC--CCcccccCCceEE
Q 020160          213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPD--VPEQLFALDNVVL  290 (330)
Q Consensus       213 V~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~~~~L~~~~nvil  290 (330)
                      |++++|... +..++. +....++++++++++++.+....+++.+.+  + .     ++....|.  +..+++...++++
T Consensus        69 Vilavp~~~-~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~-~-----~~v~~hP~~g~~~~~~~g~~~~l  138 (298)
T 2pv7_A           69 VIVSVPINL-TLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVH--T-G-----AVLGLHPMFGADIASMAKQVVVR  138 (298)
T ss_dssp             EEECSCGGG-HHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHC--S-S-----EEEEEEECSCTTCSCCTTCEEEE
T ss_pred             EEEeCCHHH-HHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhc--C-C-----CEEeeCCCCCCCchhhcCCeEEE
Confidence            999999764 666653 466679999999999887654444444432  1 1     22222332  1124666668999


Q ss_pred             cCCC
Q 020160          291 SPHS  294 (330)
Q Consensus       291 TPHi  294 (330)
                      |||-
T Consensus       139 ~~~~  142 (298)
T 2pv7_A          139 CDGR  142 (298)
T ss_dssp             EEEE
T ss_pred             ecCC
Confidence            9974

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.21  E-value=2.7e-11  Score=115.50  Aligned_cols=103  Identities=19%  Similarity=0.209  Sum_probs=86.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhh-cCCEEEEeccCCcccccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAA-NSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++.|||++|+|+|+||+.+|++++.+|++|+++|+++...     .+.. ..+.++++. .||+++.     .++.++|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP-----~A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAP-----CAMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEE-----CSCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecH-----hHHHhhcC
Confidence            6899999999999999999999999999999998764321     1222 236778888 8999974     35888999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .+.++.|| ..+++|.+++.+.++++ .++|+++.+.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 78999999999999888 5999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.19  E-value=4.2e-11  Score=110.67  Aligned_cols=138  Identities=17%  Similarity=0.204  Sum_probs=100.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------C--------------CCCCCCHHHHhh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------T--------------YPFYPDVCELAA  208 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~--------------~~~~~~l~ell~  208 (330)
                      ++|+|||+|.||+.+|+.+...|++|++||++++...                +              .....++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            6899999999999999999999999999999864310                0              122467888999


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCce
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV  288 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nv  288 (330)
                      +||+|+.++|.+.+....+-++..+.+++++++++.+.+  +...++.+++... -...++..|.       |.+..+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~lv  154 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNNTA  154 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSCEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCceE
Confidence            999999999988766665556777889999999965444  3567787777543 2335665553       34567788


Q ss_pred             EEcCCCCCCCHHHHHHHHH
Q 020160          289 VLSPHSAVFTPESFKDVCE  307 (330)
Q Consensus       289 ilTPHia~~t~~~~~~~~~  307 (330)
                      .++|| ...+.+..+.+.+
T Consensus       155 evv~~-~~t~~~~~~~~~~  172 (283)
T 4e12_A          155 EVMGT-TKTDPEVYQQVVE  172 (283)
T ss_dssp             EEEEC-TTSCHHHHHHHHH
T ss_pred             EEEeC-CCCCHHHHHHHHH
Confidence            89998 3334555444433

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.17  E-value=2.9e-11  Score=113.76  Aligned_cols=115  Identities=14%  Similarity=0.110  Sum_probs=93.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCC------------CCCCCCC-CHHHHhhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPS------------VTYPFYP-DVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------------~~~~~~~-~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      .++|||||+|.||..+|+.|...| ++|++||+++...            .+.  .. ++.+++++||+|++++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            368999999999999999999999 9999999986210            122  45 7889999999999999988776


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  276 (330)
                      +.+  .+.++.++++.++||+++........+.+.+.+..+.....-|+.++|
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            654  677888999999999999999999999999988766432223566443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.16  E-value=3.8e-11  Score=109.76  Aligned_cols=162  Identities=14%  Similarity=0.107  Sum_probs=115.2

Q ss_pred             ceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHH
Q 020160           59 VKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCF  138 (330)
Q Consensus        59 ~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~  138 (330)
                      ++++.+  ..++.++++..++++.-++....|+|.++.    +.|    +..|.|++.     .+++.++.|.       
T Consensus        54 ~~G~~v--t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~-----~g~~~~l~~~-------  111 (263)
T 2d5c_A           54 FRGVNL--TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA-----PGFLEALKAG-------  111 (263)
T ss_dssp             CSEEEE--CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEECCHH-----HHHHHHHHHT-------
T ss_pred             CceEEE--cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH-----HHHHHHHHHh-------
Confidence            445554  347888899999999999999999999975    234    223444433     2444433221       


Q ss_pred             HHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCCCCHHHHhhcCCE
Q 020160          139 VRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFYPDVCELAANSDV  212 (330)
Q Consensus       139 ~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~ell~~aDv  212 (330)
                                    +.+++| +++|||+|.||+.+|+.|...|++|.+++|+.+...      +.. ..+++++ +++|+
T Consensus       112 --------------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Di  174 (263)
T 2d5c_A          112 --------------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARL  174 (263)
T ss_dssp             --------------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSE
T ss_pred             --------------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCE
Confidence                          225789 999999999999999999999999999999764311      112 3567788 99999


Q ss_pred             EEEeccCCc--cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          213 LIICCALTD--QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       213 V~l~~P~t~--~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      |++++|...  .+...+.   .+.+++|.++++++.+.. +. .|.+++++..+
T Consensus       175 vi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          175 LVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             EEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             EEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            999999873  3334443   466899999999998743 33 47777776544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.14  E-value=4.1e-10  Score=108.89  Aligned_cols=96  Identities=18%  Similarity=0.312  Sum_probs=77.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC-----------------CC------------
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP-----------------FY------------  200 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~-----------------~~------------  200 (330)
                      .+.+.+|+|+|+|.||..+|+.++++|++|+++|+++...     .+..                 +.            
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            4789999999999999999999999999999999987531     1111                 11            


Q ss_pred             CCHHHHhhcCCEEEEec--cCCccccccccHHHHhcCCCCcEEEEcC--CCcccC
Q 020160          201 PDVCELAANSDVLIICC--ALTDQTHHLINKQVLLALGKKGVIINVG--RGAIID  251 (330)
Q Consensus       201 ~~l~ell~~aDvV~l~~--P~t~~t~~li~~~~l~~mk~gailIN~~--rg~~vd  251 (330)
                      .++.+.+++||+|+.++  |.. ....+++++.++.||||+++||+|  +|+.+.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e  320 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIE  320 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBT
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCcc
Confidence            25778899999999874  543 456789999999999999999998  666553

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.13  E-value=9.7e-11  Score=116.13  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=95.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCC--CCCCHHHHhh---cCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYP--FYPDVCELAA---NSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~--~~~~l~ell~---~aDvV~l~~P~t~~t~  224 (330)
                      .++|||||+|.||..+|+.|...|++|.+||+++....        +..  ...+++++++   .+|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            46899999999999999999999999999999875311        111  2468889887   4999999999988888


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFEN  274 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~  274 (330)
                      .++ .+.++.|++|.++||++++...+...+.+.+.+..+.....-|+..
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg  132 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG  132 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC
Confidence            777 5778899999999999999999999999999988776444444443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.11  E-value=5.3e-11  Score=109.82  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEEEEECCCCCCC-----CCC--CCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNKKPS-----VTY--PFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~~-----~~~--~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|||||+|.||+.+|+.|...  |++|.++++++...     .+.  ....++++++++||+|++++|.... +.++ .
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~-~~v~-~   84 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKT-IDFI-K   84 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHH-HHHH-H
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHH-HHHH-H
Confidence            6899999999999999999866  68999999875421     122  1235677888999999999996543 5554 3


Q ss_pred             HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe---cCCC---CCCC-CcccccCCceEEcCCCCCCC
Q 020160          230 QVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD---VFEN---EPDV-PEQLFALDNVVLSPHSAVFT  298 (330)
Q Consensus       230 ~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD---V~~~---EP~~-~~~L~~~~nvilTPHia~~t  298 (330)
                      +..+. ++++.++++++++.....+.+.+.+.+..+.  .++   ++..   .|.. ..+++...+++++||.++..
T Consensus        85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~  159 (290)
T 3b1f_A           85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKP  159 (290)
T ss_dssp             HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCT
T ss_pred             HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCH
Confidence            45667 8999999999988776667788877652222  233   2222   2321 23677888899999976543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.11  E-value=2.1e-11  Score=115.74  Aligned_cols=131  Identities=24%  Similarity=0.245  Sum_probs=92.7

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      ..+.+++|||||+|.||+++|+.|+..|++|+++++++...      .+.... ++++++++||+|++++|.... ..++
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~-~~v~   89 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQ-GRLY   89 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHH-HHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHH-HHHH
Confidence            35789999999999999999999999999999999876431      133323 788999999999999996644 5555


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc----cccc---CCceEEcCCCC
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE----QLFA---LDNVVLSPHSA  295 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~----~L~~---~~nvilTPHia  295 (330)
                      .++..+.+++++++++++ |  +..  ....+.    .+.++||+...|..+.    .++.   -.++++|||..
T Consensus        90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            446667899999999874 2  222  111111    1234566666664332    2554   67788999954

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.10  E-value=1.1e-10  Score=111.97  Aligned_cols=180  Identities=10%  Similarity=0.088  Sum_probs=110.5

Q ss_pred             ceEEEEcCCCCCCHHHHccCC-CcceeEEcCCCCCCCChhHHhhcCcEEEe---CCCCc-hh------hHHHHHHHHHHH
Q 020160           59 VKAIFSSAGAPVTAEILRLLP-EVRLVVATSAGLNHIDVVECRRRGVALAN---AGNVF-SE------DVADYALGLLID  127 (330)
Q Consensus        59 ~d~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n---~~~~~-~~------~vAE~al~l~L~  127 (330)
                      +|+|+.-.  ..+.+-++.+. +-.++...-...|.=-++++.++||...-   .|... +.      +++|.+=     
T Consensus        85 adiIlkVk--~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG-----  157 (381)
T 3p2y_A           85 ADVVVKVN--PPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG-----  157 (381)
T ss_dssp             SSEEECSS--CCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH-----
T ss_pred             CCEEEEeC--CCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH-----
Confidence            57666532  24455566655 44455444444444345778889988854   33211 11      2333221     


Q ss_pred             HHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC---
Q 020160          128 VLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF---  199 (330)
Q Consensus       128 ~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~---  199 (330)
                       ++-+......  -++...- -..-...+.+++|+|||+|.||..+|+.++++|++|+++|+++...     .+..+   
T Consensus       158 -y~Av~~aa~~--l~~~~~~-l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l  233 (381)
T 3p2y_A          158 -YKAVLLGASL--STRFVPM-LTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDL  233 (381)
T ss_dssp             -HHHHHHHHHH--CSSCSSC-EECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCC
T ss_pred             -HHHHHHHHHH--hhhhhhh-hhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEec
Confidence             1111111111  1111000 0000225789999999999999999999999999999999987531     11111   


Q ss_pred             ----------------------CCCHHHHhhcCCEEEEec--cCCccccccccHHHHhcCCCCcEEEEcC--CCccc
Q 020160          200 ----------------------YPDVCELAANSDVLIICC--ALTDQTHHLINKQVLLALGKKGVIINVG--RGAII  250 (330)
Q Consensus       200 ----------------------~~~l~ell~~aDvV~l~~--P~t~~t~~li~~~~l~~mk~gailIN~~--rg~~v  250 (330)
                                            ..++.+.+++||+|+.++  |.. .+..+++++.++.||||+++||+|  +|+.+
T Consensus       234 ~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          234 GIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             C-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             cccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence                                  125678899999999875  543 356789999999999999999997  45443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.09  E-value=4.9e-11  Score=107.95  Aligned_cols=92  Identities=15%  Similarity=0.291  Sum_probs=67.7

Q ss_pred             CccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC--------------C------CCCCCCCCHHHHhhcCC
Q 020160          152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP--------------S------VTYPFYPDVCELAANSD  211 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------~------~~~~~~~~l~ell~~aD  211 (330)
                      ...++.+++|||||+|.||+.+|+.|...|++|++|+|+++.              .      .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            356799999999999999999999999999999999998654              0      12223457889999999


Q ss_pred             EEEEeccCCccccccccHHH-HhcCCCCcEEEEcCC
Q 020160          212 VLIICCALTDQTHHLINKQV-LLALGKKGVIINVGR  246 (330)
Q Consensus       212 vV~l~~P~t~~t~~li~~~~-l~~mk~gailIN~~r  246 (330)
                      +|++++|......-+  .+. ...+ ++.++|+++-
T Consensus        93 vVilavp~~~~~~~~--~~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           93 LVVNATEGASSIAAL--TAAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EEEECSCGGGHHHHH--HHHCHHHH-TTSEEEECCC
T ss_pred             EEEEccCcHHHHHHH--HHhhhhhc-CCCEEEECCC
Confidence            999999976554433  223 3344 7999999993

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.07  E-value=1.6e-10  Score=106.59  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH--HH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK--QV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~  231 (330)
                      ++|||||+|.||+.+|+.|...|++|.+++ ++...     .+.....+++++++++|+|++++|...+++.++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999998 66542     13444568999999999999999987766666532  45


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .+.++++.++|+++.|...+.+.+.+.+.+..+
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            567899999999999988888889998887433

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.06  E-value=2.3e-10  Score=105.42  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             CceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHH
Q 020160           58 SVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADC  137 (330)
Q Consensus        58 ~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~  137 (330)
                      +++++.+.  .+..++++..++.+.-.+....++|.++.    +.|-.    .|.|++..     +++.++.|       
T Consensus        65 ~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~~~~l~~-------  122 (275)
T 2hk9_A           65 KVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GFLKSLKS-------  122 (275)
T ss_dssp             TCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HHHHHHHH-------
T ss_pred             CCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HHHHHHHH-------
Confidence            56777774  46778888888888888888888888864    33422    23444332     33333322       


Q ss_pred             HHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCC
Q 020160          138 FVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSD  211 (330)
Q Consensus       138 ~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aD  211 (330)
                         .           +.++.|++++|||+|.+|+++|+.|...|++|.+++|+++..      .+.....++.++++++|
T Consensus       123 ---~-----------~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aD  188 (275)
T 2hk9_A          123 ---L-----------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQ  188 (275)
T ss_dssp             ---H-----------CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCS
T ss_pred             ---h-----------CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCC
Confidence               0           224678999999999999999999999999999999986421      12222347888899999


Q ss_pred             EEEEeccCCcc--ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          212 VLIICCALTDQ--THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       212 vV~l~~P~t~~--t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      +|++++|....  +...++   ++.++++.++++++.   . ...+.+..++..+
T Consensus       189 iVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~  236 (275)
T 2hk9_A          189 VIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGA  236 (275)
T ss_dssp             EEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTC
T ss_pred             EEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcC
Confidence            99999997752  223443   456899999999988   2 3334555444333

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.06  E-value=1.4e-10  Score=115.17  Aligned_cols=109  Identities=20%  Similarity=0.269  Sum_probs=90.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCCCCHHHHhhc---CCEEEEeccCCccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFYPDVCELAAN---SDVLIICCALTDQT  223 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~~P~t~~t  223 (330)
                      ...++|||||+|.||+.+|+.|...|++|.+|+|+++...         +.....+++++++.   +|+|++++|..+.+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            4678999999999999999999999999999999864311         33345688898887   99999999988888


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +.++ .+..+.+++|.++||++.|...+...+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            8887 4677889999999999999988888898989876554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.05  E-value=6.5e-11  Score=109.51  Aligned_cols=106  Identities=19%  Similarity=0.273  Sum_probs=87.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|+|||+|.||+.+|+.|...|++|.++++++...     .+.....+++++++++|+|++++|....++.++.  .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            589999999999999999999999999999876431     1334456888999999999999997777776662  345


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .+.++++.++|+++.|...+.+.+.+.+.+..+
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  118 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV  118 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            677999999999999988778889998877544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.05  E-value=9.9e-11  Score=111.27  Aligned_cols=135  Identities=13%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhc----CCEEEEeccCCcccccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAAN----SDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~----aDvV~l~~P~t~~t~~li~  228 (330)
                      -++|||||+|.||+++|+.|+..|++|++||+++...     .+.....++++++++    ||+|++|+|. ..+..++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~   86 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD   86 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence            4689999999999999999999999999999986431     233335678887764    7999999995 46666652


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---C-CCcccccCCceEEcCCCCC
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP---D-VPEQLFALDNVVLSPHSAV  296 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP---~-~~~~L~~~~nvilTPHia~  296 (330)
                        .+..++++++++|++..+.--.+++.+.+...+.-+ +-=++..|-   . ....|+...++++||+-..
T Consensus        87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~-~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~  155 (341)
T 3ktd_A           87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVG-SHPMAGTANSGWSASMDGLFKRAVWVVTFDQLF  155 (341)
T ss_dssp             --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEEC-EEECCSCC-CCGGGCCSSTTTTCEEEECCGGGT
T ss_pred             --HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEec-CCccccccccchhhhhhHHhcCCeEEEEeCCCC
Confidence              334458999999998765433333433332111111 122444431   1 1235888889999997543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.04  E-value=4.4e-10  Score=110.87  Aligned_cols=142  Identities=14%  Similarity=0.198  Sum_probs=97.6

Q ss_pred             EcCCCCCCCC-hhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEE
Q 020160           86 ATSAGLNHID-VVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIV  164 (330)
Q Consensus        86 ~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIi  164 (330)
                      -+++|+..+- +.+.....|+|.|+.+....+.-+...+.--++.           .+.|..     .+.++.||+++|+
T Consensus       208 eTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~-----------dgi~r~-----tg~~L~GKtVvVt  271 (488)
T 3ond_A          208 ETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLP-----------DGLMRA-----TDVMIAGKVAVVA  271 (488)
T ss_dssp             CSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHH-----------HHHHHH-----HCCCCTTCEEEEE
T ss_pred             cccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHH-----------HHHHHH-----cCCcccCCEEEEE
Confidence            4567776652 2222346799999876444432222221111111           111100     1345899999999


Q ss_pred             ecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          165 GLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       165 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      |+|.||+.+|++|+++|++|+++++++...     .+. ...++++++..+|+|+.+.    .+.++++.+.++.||+++
T Consensus       272 GaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~-dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~ga  346 (488)
T 3ond_A          272 GYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGL-QVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNA  346 (488)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTE
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCC-ccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCe
Confidence            999999999999999999999999875431     122 2357889999999998643    466789999999999999


Q ss_pred             EEEEcCCCc
Q 020160          240 VIINVGRGA  248 (330)
Q Consensus       240 ilIN~~rg~  248 (330)
                      +++|+|++.
T Consensus       347 iVvNaG~~~  355 (488)
T 3ond_A          347 IVCNIGHFD  355 (488)
T ss_dssp             EEEESSSTT
T ss_pred             EEEEcCCCC
Confidence            999999983

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.04  E-value=2.1e-10  Score=106.13  Aligned_cols=106  Identities=20%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||+.+|+.|...|++|.++++++...     .+.....+++++++++|+|++++|....++.++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999876421     1334456888999999999999998777777764  256


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .+.++++.++|++++|...+.+.+.+.+.+..+
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~  117 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGI  117 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            677999999999999887778888888877544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.02  E-value=2.3e-10  Score=105.68  Aligned_cols=104  Identities=17%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH--HH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK--QV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~  231 (330)
                      ++|||||+|.||+.+|+.|...|++|.+|+++++..     .+.....+++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            479999999999999999999999999999976531     23334568889999999999999987777776543  24


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ++.++++.++|+++....-+...+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            5678999999998887776667777777653

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.00  E-value=5e-10  Score=111.55  Aligned_cols=107  Identities=17%  Similarity=0.228  Sum_probs=89.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCCCCCCHHHHhhc---CCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYPFYPDVCELAAN---SDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~ell~~---aDvV~l~~P~t~~t~  224 (330)
                      ..+|||||+|.||+.+|+.|...|++|.+|+|++...          .+.....+++++++.   +|+|++++|..+.++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            4689999999999999999999999999999987431          133345689898887   999999999887888


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .++ .+..+.+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            877 4677889999999999999888888898888875554

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.98  E-value=5.6e-10  Score=104.25  Aligned_cols=107  Identities=17%  Similarity=0.260  Sum_probs=85.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH--H
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK--Q  230 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~  230 (330)
                      -++|||||+|.||+.+|+.|...|++|.+++++++..     .+.....+++++++++|+|++++|....++.++..  .
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            3689999999999999999999999999999976542     13334567889999999999999976666665532  2


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .++.++++.++|+++++.....+.+.+.+....+
T Consensus       110 ~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~  143 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG  143 (316)
T ss_dssp             GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            4567899999999999887777888888865444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.97  E-value=1.4e-09  Score=99.56  Aligned_cols=139  Identities=19%  Similarity=0.272  Sum_probs=94.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC--CCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP--FYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|+|||+|.||+.+|+.|...|++|.++++++...     .+..  ...+++++ +++|+|++++|.. .+..++ .+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-LILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-HHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-HHHHHH-HHH
Confidence            479999999999999999999999999999876421     1221  23577788 9999999999953 455554 355


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC---CCCC-cccccCCceEEcCCCCCCCHHHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE---PDVP-EQLFALDNVVLSPHSAVFTPESFKD  304 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---P~~~-~~L~~~~nvilTPHia~~t~~~~~~  304 (330)
                      .+.++++.++|+++..+....+.+.+.+.  ++.+. .-++..+   |... ..++....++++|+-++ +.+..+.
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~~~  150 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLAC  150 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHHH
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHHHH
Confidence            67789999999998776655565555443  33222 2344222   2111 24667778899997543 4444433

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.95  E-value=3.7e-10  Score=103.68  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=83.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      ++|||||+|.||+.+|+.|.. |++|.+++++++...     +..... +++++.++|+|++++|....++.++ .+..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 999999998765321     222223 6678899999999999776676655 45667


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       234 ~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .++++.++|+++.+...+.+.+.+.+.+..+
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            7899999999999888888889998887543

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.94  E-value=1.2e-09  Score=108.42  Aligned_cols=106  Identities=15%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------CCCCCCCCHHHHhh---cCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VTYPFYPDVCELAA---NSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~ell~---~aDvV~l~~P~t~~t~~  225 (330)
                      ++|||||+|.||+.+|..|...|++|.+|+|+++..          .+.....+++++++   .+|+|++++|..+.++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            589999999999999999999999999999976431          12333568888875   89999999998777787


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++. +..+.+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            764 567789999999999999888888888888775554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.93  E-value=7.3e-10  Score=109.73  Aligned_cols=106  Identities=20%  Similarity=0.284  Sum_probs=87.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C----CCCCCCCHHHHhhc---CCEEEEeccCCcccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V----TYPFYPDVCELAAN---SDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~----~~~~~~~l~ell~~---aDvV~l~~P~t~~t~~l  226 (330)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++..     .    +.....+++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            689999999999999999999999999999976431     0    23345688898876   99999999988777777


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      + .+..+.+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            6 4567789999999999999888888888888765554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.91  E-value=7.7e-10  Score=109.33  Aligned_cols=130  Identities=12%  Similarity=0.139  Sum_probs=93.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEEEEECCCCCCCC------------------------CCCCCCCHHHHhhcCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNKKPSV------------------------TYPFYPDVCELAANSDV  212 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~~~------------------------~~~~~~~l~ell~~aDv  212 (330)
                      ++|+|||+|.||..+|..|...  |++|+++|++++...                        +.....++.+.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999887  899999998753210                        11123567788999999


Q ss_pred             EEEeccCCccccccc-------------cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe---cCCCCC
Q 020160          213 LIICCALTDQTHHLI-------------NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD---VFENEP  276 (330)
Q Consensus       213 V~l~~P~t~~t~~li-------------~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD---V~~~EP  276 (330)
                      |++|+|.....++.+             .++..+.++++.++|++|+..+-..+.+.+.+.+....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            999998655443321             13456678999999999998887788888888775421  233   356666


Q ss_pred             CCCc----ccccCCceEE
Q 020160          277 DVPE----QLFALDNVVL  290 (330)
Q Consensus       277 ~~~~----~L~~~~nvil  290 (330)
                      ..+.    .+...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            5433    2456677764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.91  E-value=9.6e-10  Score=109.00  Aligned_cols=106  Identities=21%  Similarity=0.281  Sum_probs=87.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CC-------CCCCCCHHHHhhc---CCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VT-------YPFYPDVCELAAN---SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~-------~~~~~~l~ell~~---aDvV~l~~P~t~~  222 (330)
                      ++|||||+|.||+.+|..|...|++|.+|+|+++..      .+       .....+++++++.   +|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            579999999999999999999999999999975421      12       2335688888874   9999999998777


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++.++ .+..+.+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            77776 4567789999999999999888888888888876554

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.43  E-value=1.4e-10  Score=102.13  Aligned_cols=90  Identities=24%  Similarity=0.283  Sum_probs=72.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.+++|||||+|.||+.+|+.|...|++|.+++|++....    +... .++.++++++|+|++++|.. .++.++  + 
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~-~~~~~~~~~aDvVilav~~~-~~~~v~--~-   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEV-LCYSEAASRSDVIVLAVHRE-HYDFLA--E-   91 (201)
Confidence            6788999999999999999999999999999998765211    2222 26778899999999999975 677765  2 


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 020160          232 LLALGKKGVIINVGRGAII  250 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~v  250 (330)
                      +..++++.++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            4556789999999999753

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.89  E-value=9.5e-10  Score=108.03  Aligned_cols=93  Identities=19%  Similarity=0.349  Sum_probs=72.5

Q ss_pred             ccccCC-ceEEEEecChHHHHHHHHHHhC------CCEEEEECCCCCCC------CCCCC----CCCHHHHhhcCCEEEE
Q 020160          153 GSKLGG-KRVGIVGLGSIGSEVAKRLEAF------GCCVSYNSRNKKPS------VTYPF----YPDVCELAANSDVLII  215 (330)
Q Consensus       153 ~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~~~~~~~~------~~~~~----~~~l~ell~~aDvV~l  215 (330)
                      ...|+| +||||||+|.||+++|+.|+..      |++|++..+.....      .++..    ..++.+++++||+|++
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLL  127 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEE
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEE
Confidence            356899 9999999999999999999988      99987555443221      23332    2578999999999999


Q ss_pred             eccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          216 CCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       216 ~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ++|...... ++. +.++.||+|++ |-.+.|-
T Consensus       128 aVP~~~~~e-Vl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          128 LISDAAQAD-NYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             CSCHHHHHH-HHH-HHHHHSCTTCE-EEESSSH
T ss_pred             CCChHHHHH-HHH-HHHHhcCCCCe-EEEeCCC
Confidence            999876654 565 78999999998 4666663

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.87  E-value=2.4e-09  Score=99.58  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=90.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------------CCCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------TYPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -+.|+|||||+|.||..+|+.+. .|++|++||+++....            +.....++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            46899999999999999999999 9999999999864311            1222346666 89999999999998876


Q ss_pred             cccccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHH
Q 020160          224 HHLINKQVLLALGKKGVII-NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESF  302 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailI-N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~  302 (330)
                      +..+-.+ ++.+ ++++++ |+|.-+   ...+.+.+. ......++-.|.  |.     ..++-+.+.|+-. .+.++.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~~-t~~~~~  153 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISRF-TDSKTV  153 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECTT-CCHHHH
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCCC-CCHHHH
Confidence            6554333 5667 898884 887744   345554442 222345666665  32     2346677777422 234555


Q ss_pred             HHHH
Q 020160          303 KDVC  306 (330)
Q Consensus       303 ~~~~  306 (330)
                      +++.
T Consensus       154 ~~~~  157 (293)
T 1zej_A          154 AFVE  157 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.86  E-value=3e-09  Score=93.91  Aligned_cols=80  Identities=16%  Similarity=0.301  Sum_probs=63.5

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      .++.+++|+|||+|.||+.+|+.|...|++|.+++++++             .+++||+|++++| ++.++.++. +..+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------~~~~aD~vi~av~-~~~~~~v~~-~l~~   79 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------ATTLGEIVIMAVP-YPALAALAK-QYAT   79 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------CSSCCSEEEECSC-HHHHHHHHH-HTHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------HhccCCEEEEcCC-cHHHHHHHH-HHHH
Confidence            357889999999999999999999999999999998754             4578999999999 666666654 3445


Q ss_pred             cCCCCcEEEEcCCCcc
Q 020160          234 ALGKKGVIINVGRGAI  249 (330)
Q Consensus       234 ~mk~gailIN~~rg~~  249 (330)
                      .++ ++++|++++|--
T Consensus        80 ~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           80 QLK-GKIVVDITNPLN   94 (209)
T ss_dssp             HHT-TSEEEECCCCBC
T ss_pred             hcC-CCEEEEECCCCC
Confidence            677 999999999765

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.85  E-value=1.5e-09  Score=98.60  Aligned_cols=98  Identities=17%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|||||+|.||+.+|+.|...|++|+++++...+.       .+..  .++++++++||+|++++|.....+.+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            479999999999999999999999999988732110       1222  57788899999999999987666654  466


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .+.+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            677876  99999988877777888887653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.81  E-value=1.1e-09  Score=99.72  Aligned_cols=97  Identities=14%  Similarity=0.285  Sum_probs=75.2

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+++.+++|||||+|.||+.+|+.+...|++ |.+++++++..      .+.....+++++++++|+|++++|.. ..+.
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHH
Confidence            3456678999999999999999999988998 88999876431      13333467888889999999999976 3355


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                      ++ .+..+.++++.++|+++.|...+
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchH
Confidence            54 34566788999999999987654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.81  E-value=1.9e-08  Score=99.01  Aligned_cols=179  Identities=13%  Similarity=0.118  Sum_probs=110.5

Q ss_pred             CCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC---CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEE
Q 020160          109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE---FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS  185 (330)
Q Consensus       109 ~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~---~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~  185 (330)
                      +.|.|--.|.|.+.++++..         ....++|.....   +.....-.=++|||||+|.||..+|..+...|++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a---------~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~   81 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEA---------HSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF   81 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHT---------TCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             ccccchhhhhHHHHHHHHhH---------HHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence            34556666777777777652         223456854311   111111123689999999999999999999999999


Q ss_pred             EECCCCCCC-------------CCC-------------CCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCc
Q 020160          186 YNSRNKKPS-------------VTY-------------PFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKG  239 (330)
Q Consensus       186 ~~~~~~~~~-------------~~~-------------~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga  239 (330)
                      ++|++++..             .+.             ....+++ .+++||+|+.++|.+.+.+.-+-++..+.+++++
T Consensus        82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a  160 (460)
T 3k6j_A           82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC  160 (460)
T ss_dssp             EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC
T ss_pred             EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC
Confidence            999986510             111             1234564 6899999999999877665444456777899999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHH
Q 020160          240 VIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCEL  308 (330)
Q Consensus       240 ilIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~  308 (330)
                      +|+..+++  +....+.+.+.. .-...++..|.  |..     .++-+.+.|+- ..+.++.+.+...
T Consensus       161 IlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEIv~g~-~Ts~e~~~~~~~l  218 (460)
T 3k6j_A          161 IFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEIIYGS-HTSSQAIATAFQA  218 (460)
T ss_dssp             EEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEEECCS-SCCHHHHHHHHHH
T ss_pred             EEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEEEeCC-CCCHHHHHHHHHH
Confidence            99644333  444566665543 22346777776  422     23445666642 2344555544433

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.79  E-value=5.5e-09  Score=99.99  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=80.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCCCCHHHHhh-cCCEEEEeccCCccccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFYPDVCELAA-NSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li  227 (330)
                      ++.||+++|+|+|+||+.+|++|..+|++|+++|+++....      +.. ..+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence            58999999999999999999999999999999998754211      222 235566666 899998763     66788


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      +.+.++.|+ ..++++.+++.+.+++ ..+.|+++.+
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            888888884 5789999999988866 5567777766

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.76  E-value=1e-08  Score=100.18  Aligned_cols=111  Identities=14%  Similarity=0.080  Sum_probs=81.6

Q ss_pred             CccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----------------------CCCCCCCHHHHhh
Q 020160          152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----------------------TYPFYPDVCELAA  208 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----------------------~~~~~~~l~ell~  208 (330)
                      ++++..-++|+|||+|.||..+|..|.. |++|++||+++....                       ......++.+.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4667777899999999999999999988 999999998764210                       1122457888999


Q ss_pred             cCCEEEEeccCCccc-------cccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          209 NSDVLIICCALTDQT-------HHLI--NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t-------~~li--~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .||+|++++|...+.       ..+.  -+...+ +++|+++|+.|.-.+-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            999999999975321       1221  134566 999999999999888778888888876544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.70  E-value=7.9e-09  Score=85.44  Aligned_cols=85  Identities=24%  Similarity=0.339  Sum_probs=68.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CC--CCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TY--PFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~--~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      |++++|||.|.||+.+++.|+.+|++|.++++++....      +.  ....+++++++++|+|++++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            89999999999999999999999999999998765321      11  23568889999999999999866   334444


Q ss_pred             HHHhcCCCCcEEEEcCCCc
Q 020160          230 QVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~  248 (330)
                         +.+++|.+++|++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4578899999998754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.70  E-value=4.5e-08  Score=90.87  Aligned_cols=111  Identities=15%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC------------------CCCCCCHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT------------------YPFYPDVC  204 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~------------------~~~~~~l~  204 (330)
                      ++|+|||+|.||..+|..+...|++|+++|+++...                .+                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            689999999999999999999999999999975321                01                  11235777


Q ss_pred             HHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCC
Q 020160          205 ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFE  273 (330)
Q Consensus       205 ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~  273 (330)
                      +.+++||+|++++|...+...-+-++..+.++++++++..+.|  +....+.+.+.. .++  .+...+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~~~~--~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQDRF--AGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCGGGE--EEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCcccE--EEEecCC
Confidence            7899999999999976544332324455668889998855444  334455555432 123  4555554

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.69  E-value=3.9e-08  Score=96.23  Aligned_cols=102  Identities=18%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------------------------CC-CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------------------VT-YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------------------~~-~~~~~~l~ell~~aDvV  213 (330)
                      ++|+|||+|.||..+|..|...|++|+++|++++..                        .+ .....++++.++.||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            479999999999999999999999999999875321                        01 12235777889999999


Q ss_pred             EEeccCCcc---------ccccccHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 020160          214 IICCALTDQ---------THHLINKQVLLALGK---KGVIINVGRGAIID-EKEMVGCLLR  261 (330)
Q Consensus       214 ~l~~P~t~~---------t~~li~~~~l~~mk~---gailIN~~rg~~vd-~~aL~~aL~~  261 (330)
                      ++|+|....         .+..+ ++..+.+++   +.++|+.|...+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999997654         33332 345566888   99999998766555 6667777765

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.66  E-value=5e-08  Score=88.25  Aligned_cols=99  Identities=20%  Similarity=0.338  Sum_probs=71.5

Q ss_pred             CceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      .++|||||+|.||+.+|+.|...|    .+|.+|+++++. .+.....+..+++++||+|++++|. ...+.++. +..+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~-~l~~   80 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN-NIKP   80 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH-HSGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            468999999999999999999888    689999998765 3444456788999999999999994 45555543 3445


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          234 ALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       234 ~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .++ +..+|....|  ++.+.+.+.+..+
T Consensus        81 ~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           81 YLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             GCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             hcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            564 4555554443  3345666666543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.66  E-value=1.5e-08  Score=89.67  Aligned_cols=90  Identities=21%  Similarity=0.265  Sum_probs=68.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .+++|+|||+|.||+.+|+.+...|++|.+++|+++..     .+... .+++++++++|+|++++|. ...+.++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEE-EEHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCce-ecHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            45799999999999999999999999999999875421     12222 2788889999999999995 45566653   


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 020160          232 LLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd  251 (330)
                      +..+.++.++|++++|.-.+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999987543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.66  E-value=6.8e-08  Score=92.26  Aligned_cols=179  Identities=16%  Similarity=0.089  Sum_probs=112.5

Q ss_pred             CceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEEeC---CCCc-----hhhHHHHHH--HHHHH
Q 020160           58 SVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA---GNVF-----SEDVADYAL--GLLID  127 (330)
Q Consensus        58 ~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---~~~~-----~~~vAE~al--~l~L~  127 (330)
                      ++|+|+.. ..+...+.....+++.++......++.-.++++.++|+...|.   |.-.     -.++++.+-  +.+++
T Consensus        66 ~ad~i~~v-ksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g  144 (361)
T 1pjc_A           66 SREMVVKV-KEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG  144 (361)
T ss_dssp             TSSEEECS-SCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEE-CCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence            57887753 3444444333345665665555555554567778889888753   4311     134444443  44443


Q ss_pred             HHhchHHHHHHHHcCC-CCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC--
Q 020160          128 VLRKLSAADCFVRQGL-WPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF--  199 (330)
Q Consensus       128 ~~R~~~~~~~~~~~g~-W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~--  199 (330)
                      ...-. ..    ..|+ +...   .. ..+.++++.|+|.|.+|+.+++.++.+|++|+++++++....     +...  
T Consensus       145 A~nt~-~~----~~g~G~~l~---~l-~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~  215 (361)
T 1pjc_A          145 ARFLE-RQ----QGGRGVLLG---GV-PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE  215 (361)
T ss_dssp             HHHTS-GG----GTSCCCCTT---CB-TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE
T ss_pred             HHHHh-hc----cCCCceecc---CC-CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeE
Confidence            32211 11    1221 1000   01 247889999999999999999999999999999999764311     1111  


Q ss_pred             -----CCCHHHHhhcCCEEEEeccCCc-cccccccHHHHhcCCCCcEEEEcCC
Q 020160          200 -----YPDVCELAANSDVLIICCALTD-QTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       200 -----~~~l~ell~~aDvV~l~~P~t~-~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                           ..++.+.+..+|+|+.+++... .+..++.++.++.|+++++++|++-
T Consensus       216 ~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          216 LLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             EEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             eeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence                 1245567789999999986543 2345667888999999999999974

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.65  E-value=4.7e-08  Score=91.80  Aligned_cols=102  Identities=17%  Similarity=0.272  Sum_probs=77.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCC----CEEEEECCCCC--CC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKK--PS-----VTYPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~--~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      ...++|||||+|.||..+|..|...|    .+|.+++|++.  ..     .+.....+..+.+++||+|++++| ....+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            34568999999999999999999989    78999999874  21     133334578889999999999999 45666


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      .++. +....++++.++|+++-|-  ..+.+.+.+.+
T Consensus        99 ~vl~-~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           99 FILD-EIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHHH-HHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             HHHH-HHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            5543 4556788999999997664  34556666764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.64  E-value=1.9e-08  Score=90.71  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=74.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC----EEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC----CVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      ++|||||+|.||+.+++.|...|+    +|.+|+|+++..      .+.....+..+++++||+|++++|. ...+.++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            689999999999999999999998    999999986532      1444457889999999999999974 3445554 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      ++....++++.++|.+.-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            34556688999999766553  35566666644

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.63  E-value=1.4e-08  Score=93.49  Aligned_cols=87  Identities=13%  Similarity=0.253  Sum_probs=69.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ++|||||+ |.||+.+|+.|...|++|.+++++++..     .+... .+..+.+++||+|++++|... ++.++ .+..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-CCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-CCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 9999999999999999999999875431     12222 366788899999999999654 55555 4556


Q ss_pred             hcCCCCcEEEEcCCCc
Q 020160          233 LALGKKGVIINVGRGA  248 (330)
Q Consensus       233 ~~mk~gailIN~~rg~  248 (330)
                      +.++++.++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6789999999998876

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.60  E-value=5.3e-08  Score=88.07  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=74.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ++|||||+|.||+.+++.+...|.+|.++++++...      .+.....+++++++++|+|++++| ....     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            589999999999999999999999999999976431      134445688999999999999999 4333     3455


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ..+++|.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            56778999999976643  45566666544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.59  E-value=8.6e-08  Score=94.25  Aligned_cols=102  Identities=12%  Similarity=0.199  Sum_probs=76.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------------------------CC-CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------------------VT-YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------------------~~-~~~~~~l~ell~~aDvV  213 (330)
                      ++|+|||+|.||..+|..|...|++|++||+++...                        .+ .....++++.++.||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            689999999999999999999999999999875420                        00 12235788889999999


Q ss_pred             EEeccCCc---------cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          214 IICCALTD---------QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       214 ~l~~P~t~---------~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      ++++|...         ..+..+ ++..+.++++.++|+.|.-.+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998664         233332 456677999999999997554445566666654

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.58  E-value=2e-07  Score=83.73  Aligned_cols=71  Identities=14%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG  236 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk  236 (330)
                      ..++|||||+|.||.++|+.|+..|++|.+|++.             ++ +++||  ++++|.. ....++ .+....++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~   66 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFAR   66 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCC
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcC
Confidence            3469999999999999999999999999999883             22 57899  8889976 556555 45666789


Q ss_pred             CCcEEEEcC
Q 020160          237 KKGVIINVG  245 (330)
Q Consensus       237 ~gailIN~~  245 (330)
                      +|+++++++
T Consensus        67 ~g~ivvd~s   75 (232)
T 3dfu_A           67 RGQMFLHTS   75 (232)
T ss_dssp             TTCEEEECC
T ss_pred             CCCEEEEEC
Confidence            999999975

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.57  E-value=3.5e-08  Score=92.43  Aligned_cols=105  Identities=19%  Similarity=0.157  Sum_probs=76.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCCC------C--CCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPSV------T--YPFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~~------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      .+++|||||+|.||+.+++.+.. +|. +|.+|+|+++...      +  .....+++++++++|+|++++|.   ++.+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence            46799999999999999999875 487 8999999864311      2  33457899999999999999985   3456


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLD  270 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lD  270 (330)
                      +..   +.+++|.+++++|....- ...+.+.+.+...  ..+|
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAV--LYVD  248 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSE--EEES
T ss_pred             cCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCE--EEEC
Confidence            654   578999999999876652 2444444433222  3567

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.57  E-value=9.3e-08  Score=79.09  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             cCCceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          156 LGGKRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       156 l~g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .+-++|+|||+    |.+|..+++.|+..|++|..+++..+...+...+.|++|+....|++++++| .+....++. +.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~-~~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-EA   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-HH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            45679999999    9999999999999999988888876444466667899999999999999999 466666653 34


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .+ ...++++++.+.    ..+++.+..++..+.
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 666778887754    257777777776665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.54  E-value=3e-07  Score=90.29  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=78.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C---------------------CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T---------------------YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~---------------------~~~~~~l~ell~~aDvV  213 (330)
                      -+++|||+|.||..+|..|...|++|++||++++...    +                     .....++.+.+++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            4799999999999999999999999999999876411    1                     12235788899999999


Q ss_pred             EEeccCCcc----------ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          214 IICCALTDQ----------THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       214 ~l~~P~t~~----------t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ++|+|....          .+..+ +...+.+++|.++|+.|.-.+=..+.+.+.+.+.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999886542          23332 4567789999999999965555566677766653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.53  E-value=1.2e-07  Score=87.45  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC---EEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC---CVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~---~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      .++|||||+|+||+.+++.+...|+   +|.+|+|+++..      .+.....+..+++++||+|++++|. ...+.++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4789999999999999999999998   899999987531      1344456888999999999999974 4445544 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          229 KQVLLA-LGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       229 ~~~l~~-mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      ++.... ++++.++|++.-|-  ..+.|.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            334445 78888999887654  45677777765

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.48  E-value=1.3e-07  Score=93.78  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=89.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------CCCCCHHHHhh
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTY-------------PFYPDVCELAA  208 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~-------------~~~~~l~ell~  208 (330)
                      -++|||||+|.||..+|..+...|++|+++|++++..                .+.             ....++ +.++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHhc
Confidence            3689999999999999999999999999999986421                111             112345 3689


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCc
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVI-INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDN  287 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gail-IN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~n  287 (330)
                      +||+|+.++|...+.+.-+-++..+.++++++| .|+|.-+   ...+.+.+.. .-...++..|.+-|.       ++-
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~v-------~~L  152 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAPV-------MKL  152 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTTT-------CCE
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhhh-------CCe
Confidence            999999999987665433335567779999998 5676543   3555555532 223456776764442       144


Q ss_pred             eEEcCCCCCCCHHHHHHHHH
Q 020160          288 VVLSPHSAVFTPESFKDVCE  307 (330)
Q Consensus       288 vilTPHia~~t~~~~~~~~~  307 (330)
                      +.+.|+-. .+.++.+.+..
T Consensus       153 vevv~g~~-Ts~e~~~~~~~  171 (483)
T 3mog_A          153 VEVVSGLA-TAAEVVEQLCE  171 (483)
T ss_dssp             EEEEECSS-CCHHHHHHHHH
T ss_pred             EEEecCCC-CCHHHHHHHHH
Confidence            55666422 33444444433

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.46  E-value=1.3e-07  Score=78.77  Aligned_cols=101  Identities=15%  Similarity=0.200  Sum_probs=78.5

Q ss_pred             CceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCC--CCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          158 GKRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNK--KPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       158 g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~--~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      -++|+|||+    |++|..+++.|+..|++|..+++..  ....+...+.++.|+....|++++++|. +....++. +.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~~-~~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNS-EAAWGVAQ-EA   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCS-THHHHHHH-HH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HH
Confidence            578999999    8999999999999999988888876  4334556677888988899999999994 66666653 33


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .+ ...++++++.+  ..  ++++.+++++..+.
T Consensus        91 ~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           91 IA-IGAKTLWLQLG--VI--NEQAAVLAREAGLS  119 (145)
T ss_dssp             HH-HTCCEEECCTT--CC--CHHHHHHHHTTTCE
T ss_pred             HH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCE
Confidence            33 56677888764  22  67888888887775

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.46  E-value=4.4e-08  Score=88.66  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|||||+|.||+.+|+.|...| .+|.+|+|+++..      .+.....++++++ ++|+|++++| ....+.++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            47999999999999999999889 9999999976431      1333344666777 9999999999 55554443    


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          232 LLALG-KKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       232 l~~mk-~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                       ..++ ++.++|+++.|--  .+.+.+.+..+
T Consensus        75 -~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence             3332 2899999865543  36677777654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.46  E-value=4.5e-07  Score=89.66  Aligned_cols=98  Identities=18%  Similarity=0.129  Sum_probs=73.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CC-EEEEECCCCC----CC----CC---C--------------------CCCCCHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GC-CVSYNSRNKK----PS----VT---Y--------------------PFYPDVCE  205 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~-~V~~~~~~~~----~~----~~---~--------------------~~~~~l~e  205 (330)
                      ++|+|||+|.||..+|..|... |+ +|++||+++.    ..    .+   .                    ....+ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            6899999999999999999999 99 9999999877    21    01   0                    01123 56


Q ss_pred             HhhcCCEEEEeccCCc--------cccccc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020160          206 LAANSDVLIICCALTD--------QTHHLI--NKQVLLALGKKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       206 ll~~aDvV~l~~P~t~--------~t~~li--~~~~l~~mk~gailIN~~rg~~vd~~aL~~  257 (330)
                      .+++||+|++++|...        ++..+.  .+...+.+++|.++|+.|.-.+-..+.+.+
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            7889999999999763        222232  245677899999999999876666666665

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.43  E-value=3.8e-07  Score=81.68  Aligned_cols=98  Identities=18%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEE-EEECCCCCCCCCCCCCCCHHHHh-hcCCEEEEeccCCccccccccHHHHhcCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNKKPSVTYPFYPDVCELA-ANSDVLIICCALTDQTHHLINKQVLLALG  236 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~~~~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk  236 (330)
                      ++|||||+|.||+.+++.+...|+++ .++|++.+.. .  .+.++++++ .++|+|++++|.....     +.....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~-~--~~~~~~~l~~~~~DvVv~~~~~~~~~-----~~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE-K--MVRGIDEFLQREMDVAVEAASQQAVK-----DYAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT-T--EESSHHHHTTSCCSEEEECSCHHHHH-----HHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh-h--hcCCHHHHhcCCCCEEEECCCHHHHH-----HHHHHHHH
Confidence            47999999999999999998889997 6888875321 1  456899999 6999999999854332     22345577


Q ss_pred             CCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020160          237 KKGVIINVGRGAIIDE---KEMVGCLLRGEI  264 (330)
Q Consensus       237 ~gailIN~~rg~~vd~---~aL~~aL~~g~i  264 (330)
                      .|..+|..+.+..-+.   +.|.++.++...
T Consensus        73 ~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           73 AGIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             TTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             CCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            8999999988877666   567777765443

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.43  E-value=6e-07  Score=82.70  Aligned_cols=114  Identities=18%  Similarity=0.289  Sum_probs=83.1

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+.++++.         .++.+.+++||+|+.+++..    ++|..+.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------~~L~~~~~~ADIVI~Avg~p----~lI~~~~  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGKP----GFIPGDW  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCCT----TCBCTTT
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhccCCEEEECCCCc----CcCCHHH
Confidence            3468999999999997 59999999999999999886532         47999999999999999733    3576655


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESF  302 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~  302 (330)
                         +|||+++||+|.-.+-|          |++   .-||-..+      .... --.+||==||.-.=+.
T Consensus       221 ---vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~------v~~~-a~~iTPVPGGVGpmT~  268 (288)
T 1b0a_A          221 ---IKEGAIVIDVGINRLEN----------GKV---VGDVVFED------AAKR-ASYITPVPGGVGPMTV  268 (288)
T ss_dssp             ---SCTTCEEEECCCEECTT----------SCE---ECSBCHHH------HHHH-CSEECCSSSSSHHHHH
T ss_pred             ---cCCCcEEEEccCCccCC----------CCc---cCCcCHHH------Hhhh-ccEecCCCCCccHHHH
Confidence               58999999999865432          554   45663211      1111 2248887777654333

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.43  E-value=7.2e-07  Score=87.11  Aligned_cols=104  Identities=23%  Similarity=0.226  Sum_probs=74.8

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C--CCCCCCHHHH---------------hhcCCEEE
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T--YPFYPDVCEL---------------AANSDVLI  214 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~--~~~~~~l~el---------------l~~aDvV~  214 (330)
                      -+|.++.|||+|.||..+|..|...|++|++||++++...    +  ..+...++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            4689999999999999999999999999999999875311    1  1122344443               35799999


Q ss_pred             EeccCCcccc--------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 020160          215 ICCALTDQTH--------HLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCL  259 (330)
Q Consensus       215 l~~P~t~~t~--------~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL  259 (330)
                      +|+|......        .+..  +...+.+++|.++|+.|.-.+=..+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence            9999765322        2321  4567789999999999987776677776654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.42  E-value=8.5e-07  Score=81.66  Aligned_cols=80  Identities=24%  Similarity=0.353  Sum_probs=67.3

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+.+.++         ..++.+.+++||+|+.+++.    .++|..+.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------TTDLKSHTTKADILIVAVGK----PNFITADM  222 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---------chhHHHhcccCCEEEECCCC----CCCCCHHH
Confidence            3468999999999998 6999999999999999988653         24789999999999999973    34576644


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 020160          232 LLALGKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~mk~gailIN~~rg~  248 (330)
                         +|||+++||+|.-.
T Consensus       223 ---vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 ---VKEGAVVIDVGINH  236 (285)
T ss_dssp             ---SCTTCEEEECCCEE
T ss_pred             ---cCCCcEEEEecccC
Confidence               59999999998755

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.41  E-value=5.8e-07  Score=89.04  Aligned_cols=102  Identities=14%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEEEEECCCCCCC------------CC------------CCCCCCHHHHhhcCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNKKPS------------VT------------YPFYPDVCELAANSDV  212 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~~------------~~------------~~~~~~l~ell~~aDv  212 (330)
                      ++|+|||+|.||..+|..|...  |++|+++|++++..            .+            .....++.+.++.||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  79999999865321            00            1112356678899999


Q ss_pred             EEEeccCCcc--------------ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          213 LIICCALTDQ--------------THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       213 V~l~~P~t~~--------------t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      |++|+|....              .+..+ +...+.++++.++|+.|.-.+=..+.+.+.+.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999986532              22221 345677999999999887665556667777776

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.41  E-value=2.4e-07  Score=87.34  Aligned_cols=100  Identities=19%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----C-C-----C---------CCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----V-T-----Y---------PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~-~-----~---------~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|+|||+|.||..+|..|...|++|.+++++++..     . +     .         ....+++++++.+|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999875321     0 1     0         123578888899999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      .... +.++ ++..+.+++++++|+. .|.......+.+.+.+
T Consensus        85 ~~~~-~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIHH-ASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGGH-HHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chHH-HHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            7654 4444 4566778999999998 4422344445565654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.41  E-value=5.5e-07  Score=87.18  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=75.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC------------------CCCCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY------------------PFYPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~------------------~~~~~l~ell~~aDvV~l  215 (330)
                      ++|+|||+|.||..+|..|.. |++|+++++++...     .+.                  ....++.+.++.||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999999 99999999875421     111                  123466788899999999


Q ss_pred             eccCCc----------cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          216 CCALTD----------QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       216 ~~P~t~----------~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ++|...          .++..+ ++..+ ++++.++|+.+.-.+-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999763          233333 34555 8999999997776666667777776554

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.41  E-value=7.4e-07  Score=82.63  Aligned_cols=81  Identities=17%  Similarity=0.315  Sum_probs=67.4

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHH--HHhhcCCEEEEeccCCccccccccH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVC--ELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~--ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+.++++.         .+++  +.+++||+|+.++|.    .++|.+
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---------~~l~l~~~~~~ADIVI~Avg~----p~~I~~  226 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---------STEDMIDYLRTADIVIAAMGQ----PGYVKG  226 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---------CHHHHHHHHHTCSEEEECSCC----TTCBCG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---------CCchhhhhhccCCEEEECCCC----CCCCcH
Confidence            3468999999999988 69999999999999999987732         2577  999999999999985    235766


Q ss_pred             HHHhcCCCCcEEEEcCCCcc
Q 020160          230 QVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~  249 (330)
                      +.   +|+|+++||+|.-.+
T Consensus       227 ~~---vk~GavVIDvgi~~~  243 (300)
T 4a26_A          227 EW---IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             GG---SCTTCEEEECCCEEE
T ss_pred             Hh---cCCCcEEEEEeccCC
Confidence            54   699999999987554

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.40  E-value=9.6e-07  Score=81.28  Aligned_cols=111  Identities=22%  Similarity=0.310  Sum_probs=82.2

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.+++|+++.|||.|. +|+.+|..|...|++|+.++++.         .++.+.+++||+|+.+++.    .++|..+.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  221 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAGC----VNLLRSDM  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHTTCSEEEECSSC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHhhcCCEEEECCCC----CCcCCHHH
Confidence            3468999999999998 69999999999999999987642         4799999999999999973    34576644


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTP  299 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~  299 (330)
                         +|||+++||+|.-.+-|          |++   .-||-..+-      .. .--.+||==||.-+
T Consensus       222 ---vk~GavVIDVgi~~~~~----------gkl---~GDVdf~~v------~~-~a~~iTPVPGGVGp  266 (285)
T 3p2o_A          222 ---VKEGVIVVDVGINRLES----------GKI---VGDVDFEEV------SK-KSSYITPVPGGVGP  266 (285)
T ss_dssp             ---SCTTEEEEECCCEECTT----------SCE---ECSBCHHHH------TT-TEEEECCSSSSHHH
T ss_pred             ---cCCCeEEEEeccCcccC----------CCE---eccccHHHH------Hh-hheEeCCCCCcCcH
Confidence               69999999999765432          655   457642211      00 12458896666543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.40  E-value=8.5e-07  Score=81.24  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=65.9

Q ss_pred             cCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          156 LGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       156 l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      ++|+++.|||.|. +|+.+|+.|...|++|+.++++         ..++.+.+++||+|+.+++.    .+++.++.   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~---------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK---------TKDIGSMTRSSKIVVVAVGR----PGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSCHHHHHHHSSEEEECSSC----TTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC---------cccHHHhhccCCEEEECCCC----CccccHhh---
Confidence            7899999999986 7999999999999999998763         25799999999999999975    23676654   


Q ss_pred             CCCCcEEEEcCCCc
Q 020160          235 LGKKGVIINVGRGA  248 (330)
Q Consensus       235 mk~gailIN~~rg~  248 (330)
                      +|||+++||+|.-.
T Consensus       212 vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 VTPGSVVIDVGINY  225 (276)
T ss_dssp             CCTTCEEEECCCEE
T ss_pred             ccCCcEEEEeccCc
Confidence            59999999998755

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.39  E-value=2.3e-07  Score=82.25  Aligned_cols=87  Identities=18%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      -++|||||+|.||+.+|+.|...|++|.+ ++|+++...      +.....+..+.++++|+|++++|.. ..+.++.  
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~--   99 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVT--   99 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHT--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHH--
Confidence            36899999999999999999999999998 998765421      2222334556789999999999843 3333321  


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 020160          231 VLLALGKKGVIINVGRGA  248 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~  248 (330)
                      .+.. .++.++|+++-|-
T Consensus       100 ~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          100 QVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             TCSC-CTTCEEEECCCCB
T ss_pred             Hhhc-cCCCEEEEcCCCC
Confidence            1122 3578999998654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.39  E-value=7e-07  Score=83.73  Aligned_cols=91  Identities=23%  Similarity=0.256  Sum_probs=69.6

Q ss_pred             CCccccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCC------CCCC--C-C-----C--CCHHHHhhcCCEE
Q 020160          151 PLGSKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKP------SVTY--P-F-----Y--PDVCELAANSDVL  213 (330)
Q Consensus       151 ~~~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~------~~~~--~-~-----~--~~l~ell~~aDvV  213 (330)
                      +.+.++.|+++.|||.|.| |+.+|+.|...|++|+.++|+...      ....  . .     .  .++.+.+++||+|
T Consensus       170 ~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIV  249 (320)
T 1edz_A          170 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  249 (320)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             ccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEE
Confidence            3466899999999999976 999999999999999999886211      1111  1 1     1  4688899999999


Q ss_pred             EEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +.+++..   .-+|..+.   +|+|+++||+|..
T Consensus       250 IsAtg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          250 ITGVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             EECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             EECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            9998753   22366655   5899999999874

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.38  E-value=3e-07  Score=80.45  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=79.5

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC------C-------CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T-------YPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~-------~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      ++|+|+| .|.||+.+++.|...|++|.+++|+++...      +       .. ..++++.++++|+|++++|. ..++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence            4799999 999999999999999999999998754211      1       11 24677889999999999984 3444


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCceEEEEecCCCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIID------------EKEMVGCLLRGEIGGAGLDVFENEP  276 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd------------~~aL~~aL~~g~i~ga~lDV~~~EP  276 (330)
                      .++. +..+.++ +.++|+++.|--.+            .+.+.+.+...    ..++++.+.|
T Consensus        79 ~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~  136 (212)
T 1jay_A           79 DTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIP  136 (212)
T ss_dssp             HHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCC
T ss_pred             HHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchH
Confidence            4432 3334454 89999999876532            56677776532    3578887766

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.38  E-value=1.4e-06  Score=80.20  Aligned_cols=81  Identities=22%  Similarity=0.411  Sum_probs=67.8

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||.|. +|+.+|..|...|++|+.+.++.         .++++.+++||+|+.+++.    .++|..+.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  222 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------RDLADHVSRADLVVVAAGK----PGLVKGEW  222 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------SCHHHHHHTCSEEEECCCC----TTCBCGGG
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------cCHHHHhccCCEEEECCCC----CCCCCHHH
Confidence            3468999999999987 79999999999999999886532         3789999999999999874    34576654


Q ss_pred             HhcCCCCcEEEEcCCCcc
Q 020160          232 LLALGKKGVIINVGRGAI  249 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~  249 (330)
                         +|||+++||+|.-.+
T Consensus       223 ---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          223 ---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             ---SCTTCEEEECCSCSS
T ss_pred             ---cCCCeEEEEeccccc
Confidence               599999999997654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.38  E-value=1e-06  Score=80.86  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=68.3

Q ss_pred             ccccCCceEEEEecChH-HHHHHHHHHhC--CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          153 GSKLGGKRVGIVGLGSI-GSEVAKRLEAF--GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~--G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      +.+++|+++.|||.|.| |+.+|+.|...  |++|+.+.++.         .++.+.+++||+|+.+++..    ++|.+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------~~L~~~~~~ADIVI~Avg~p----~~I~~  219 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------RDLPALTRQADIVVAAVGVA----HLLTA  219 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------SCHHHHHTTCSEEEECSCCT----TCBCG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------hHHHHHHhhCCEEEECCCCC----cccCH
Confidence            34689999999999985 99999999999  89999886543         47999999999999998733    35776


Q ss_pred             HHHhcCCCCcEEEEcCCCccc
Q 020160          230 QVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~v  250 (330)
                      +.   +|+|+++||+|.-.+-
T Consensus       220 ~~---vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          220 DM---VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             GG---SCTTCEEEECCEEEET
T ss_pred             HH---cCCCcEEEEccCCCCC
Confidence            55   5899999999976644

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.38  E-value=1.6e-06  Score=80.34  Aligned_cols=134  Identities=16%  Similarity=0.266  Sum_probs=87.3

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+.+++.         ..++.+.+++||+|+.+++..    ++|..+.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------t~~L~~~~~~ADIVI~Avg~p----~~I~~~~  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---------TAHLDEEVNKGDILVVATGQP----EMVKGEW  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHTTCSEEEECCCCT----TCBCGGG
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---------cccHHHHhccCCEEEECCCCc----ccCCHHH
Confidence            4568999999999996 6999999999999999988643         247999999999999998753    3577655


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC-CceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRG-EIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAV  310 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~  310 (330)
                         +|||+++||+|.-.+-|..     -++| ++.   -||-..+      ... ---.+||==||.-.=+..-+.+..+
T Consensus       227 ---vk~GavVIDVgi~~~~d~~-----~~~g~klv---GDVdf~~------v~~-~a~~iTPVPGGVGpmTiamLl~Ntv  288 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVPDDK-----KPNGRKVV---GDVAYDE------AKE-RASFITPVPGGVGPMTVAMLMQSTV  288 (301)
T ss_dssp             ---SCTTCEEEECCCBC---------------CCB---CSBCHHH------HTT-TCSEECCSSSSHHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEccCCCccccc-----ccCCCeee---ccccHHH------hhh-hceEeCCCCCCccHHHHHHHHHHHH
Confidence               5899999999986543321     1223 442   3663211      111 1234889777765433333333333


Q ss_pred             HHHHHHH
Q 020160          311 ANLEAFF  317 (330)
Q Consensus       311 ~nl~~~~  317 (330)
                      +..++++
T Consensus       289 ~aa~~~~  295 (301)
T 1a4i_A          289 ESAKRFL  295 (301)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            3333333

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.37  E-value=4.6e-07  Score=85.52  Aligned_cols=90  Identities=24%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCC-------CEEEEECCCCC-----CCC-------------C------CCCCCCHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFG-------CCVSYNSRNKK-----PSV-------------T------YPFYPDVCEL  206 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~-----~~~-------------~------~~~~~~l~el  206 (330)
                      .++|+|||+|.||..+|..|...|       .+|.+|++++.     ...             +      .....++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998888       89999998765     100             0      1113467788


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                      ++.||+|++++|. ..++.++ .+..+.+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999995 4555554 345566888999999988754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.36  E-value=4.3e-07  Score=82.84  Aligned_cols=87  Identities=18%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----C--CC-----CCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----T--YP-----FYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~--~~-----~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      ++|+|||+|.||..+|..|...|++|.+++|++....     +  ..     ...+..+.++.+|+|++++|... ++.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~-~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ-VSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG-HHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh-HHHH
Confidence            4799999999999999999999999999999865321     1  00     01123467789999999999764 5555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 020160          227 INKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg  247 (330)
                      + ++..+.+++++++|++..|
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HHHHhhCCCCCEEEEecCC
Confidence            4 3566678889999998665

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.35  E-value=6.9e-07  Score=88.47  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------------CC-------------CCCCCCHHHHhhcCCE
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------VT-------------YPFYPDVCELAANSDV  212 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~ell~~aDv  212 (330)
                      .++|+|||+|.||..+|..|...|++|++||++++..            .+             .....++++.++.||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4799999999999999999999999999999875321            01             1123466678899999


Q ss_pred             EEEeccCC---------ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          213 LIICCALT---------DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       213 V~l~~P~t---------~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      |++|+|..         ...+..+ ++..+.++++.++|+.|.-.+=..+.+.+.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999864         2333332 34566799999999998433333444544444

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.34  E-value=4.4e-07  Score=94.08  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=87.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------CCCCCHHHHhh
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTY-------------PFYPDVCELAA  208 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~-------------~~~~~l~ell~  208 (330)
                      =++|||||+|.||..+|..+...|++|+++|+++...                .+.             ....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3589999999999999999999999999999876421                111             112345 5689


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCce
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNV  288 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nv  288 (330)
                      +||+|+.++|...+.+.-+-++..+.++++++++..+.+  +....+.+.+... -.-.++..|.  |.     ..++.+
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~~-~~~ig~hf~~--P~-----~~~~lv  462 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKRP-ENFVGMHFFN--PV-----HMMPLV  462 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSCG-GGEEEEECCS--ST-----TTCCEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcCc-cceEEEEccC--Cc-----ccCceE
Confidence            999999999987765443335566778999998744333  3334555555321 1235666665  32     123455


Q ss_pred             EEcCCCCCCCHHHHHHHHH
Q 020160          289 VLSPHSAVFTPESFKDVCE  307 (330)
Q Consensus       289 ilTPHia~~t~~~~~~~~~  307 (330)
                      .+.++- ..+.++.+.+..
T Consensus       463 evv~g~-~t~~e~~~~~~~  480 (715)
T 1wdk_A          463 EVIRGE-KSSDLAVATTVA  480 (715)
T ss_dssp             EEEECS-SCCHHHHHHHHH
T ss_pred             EEEECC-CCCHHHHHHHHH
Confidence            555532 224454444433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.32  E-value=5.1e-07  Score=84.32  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=71.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECC--CCCC-----CCCC-----------CCCC--CHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR--NKKP-----SVTY-----------PFYP--DVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~--~~~~-----~~~~-----------~~~~--~l~ell~~aDvV~l~~P  218 (330)
                      ++|+|||+|.||..+|..|...|++|.++++  +++.     ..+.           ....  ++.+.++.+|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988999999998  5432     1111           1123  67778899999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCc---cc-CHHHHHHHHHc
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRGA---II-DEKEMVGCLLR  261 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~---~v-d~~aL~~aL~~  261 (330)
                      .. .++.++ .+..+ ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            65 455444 34556 88899999998775   11 22345555544

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.31  E-value=4.5e-07  Score=86.65  Aligned_cols=88  Identities=15%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC-------CEEEEECCCCC-----CCC-------------------CCCCCCCHHHHh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG-------CCVSYNSRNKK-----PSV-------------------TYPFYPDVCELA  207 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~-----~~~-------------------~~~~~~~l~ell  207 (330)
                      ++|+|||.|.||..+|..|...|       .+|.+|++++.     ...                   +.....++.+.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            48999999999999999998778       89999998765     110                   011234677888


Q ss_pred             hcCCEEEEeccCCccccccccHHHHh----cCCCCcEEEEcCCCc
Q 020160          208 ANSDVLIICCALTDQTHHLINKQVLL----ALGKKGVIINVGRGA  248 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~~l~----~mk~gailIN~~rg~  248 (330)
                      +.||+|++++|. ...+.++. +...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999994 55555542 3444    678899999998773

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.31  E-value=9e-07  Score=81.54  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCCCC----C--CCCCHHHHhhcCCEEEEeccCC--ccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTY----P--FYPDVCELAANSDVLIICCALT--DQTHH  225 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~~----~--~~~~l~ell~~aDvV~l~~P~t--~~t~~  225 (330)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++....    .  .+.++.+.++++|+|++++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4689999999999999999999999999 899999987543211    1  1234566688999999999874  22222


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      .++   .+.++++.+++++...... . .|.++.++..+
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~  227 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGN  227 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTC
T ss_pred             CCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcC
Confidence            233   3557899999999876443 3 35554444443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.30  E-value=5.5e-07  Score=85.89  Aligned_cols=93  Identities=19%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-------------CC------CCCCCCHHHHhhcCCEEEEec
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------------VT------YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------~~------~~~~~~l~ell~~aDvV~l~~  217 (330)
                      ..++|+|||.|.||..+|..|...|.+|..|+++++..             .+      .....++.+.++.||+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            34789999999999999999999999999999975320             01      112357888999999999999


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                      |.. ..+.++ ++....+++++++|+++.|-..+
T Consensus       108 p~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          108 PSF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             CHH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             CHH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            954 555554 45666788999999998876554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.29  E-value=2.7e-06  Score=83.84  Aligned_cols=112  Identities=14%  Similarity=0.166  Sum_probs=75.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------------------C--CCCCCCHHHHhhcC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------------------T--YPFYPDVCELAANS  210 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------------------~--~~~~~~l~ell~~a  210 (330)
                      -++|||||+|.||..+|..+...|++|+++|+++....                         .  .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            46899999999999999999999999999998753210                         0  0112355 568899


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE  273 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  273 (330)
                      |+|+.++|...+.+.-+-++..+.++++++++... .+ +....+.+.+... -.-.+...|.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snT-s~-~~~~~la~~~~~~-~~~ig~hf~~  175 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT-SA-LNVDDIASSTDRP-QLVIGTHFFS  175 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC-SS-SCHHHHHTTSSCG-GGEEEEEECS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCC-CC-cCHHHHHHHhcCC-cceEEeecCC
Confidence            99999999764433323245666789999998633 33 3344666655421 1224566663

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.24  E-value=1.1e-06  Score=91.11  Aligned_cols=135  Identities=18%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------------CCCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTY-------------PFYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~-------------~~~~~l~ell~~  209 (330)
                      ++|||||+|.||..+|..+...|++|+++|++++..                .+.             ....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            689999999999999999999999999999875321                110             112345 56899


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCceEEEEecCCCCCCCCcccccCCce
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR-GEIGGAGLDVFENEPDVPEQLFALDNV  288 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~L~~~~nv  288 (330)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+  +....+.+.+.. .++  .+...|.  |.     ..++.+
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p~~~--iG~hf~~--P~-----~~~~lv  460 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQDRI--VGAHFFS--PA-----HIMPLL  460 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCTTTE--EEEEECS--ST-----TTCCEE
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCCCCE--EEecCCC--Cc-----ccCceE
Confidence            99999999987665443335566779999998644333  333455554432 133  4666666  32     123455


Q ss_pred             EEcCCCCCCCHHHHHHHH
Q 020160          289 VLSPHSAVFTPESFKDVC  306 (330)
Q Consensus       289 ilTPHia~~t~~~~~~~~  306 (330)
                      .+.|+- ..+.++.+.+.
T Consensus       461 evv~g~-~t~~e~~~~~~  477 (725)
T 2wtb_A          461 EIVRTN-HTSAQVIVDLL  477 (725)
T ss_dssp             EEEECS-SCCHHHHHHHH
T ss_pred             EEEECC-CCCHHHHHHHH
Confidence            555532 22344444443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.23  E-value=1.3e-07  Score=89.90  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------------CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------------TYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +|+|||+|.||..+|..|...|++|.+|++++....                   +.....++.+.++.+|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999998753210                   011235788889999999999995 


Q ss_pred             ccccccccHH---HHhcCCC-CcEEEEcCCCccc
Q 020160          221 DQTHHLINKQ---VLLALGK-KGVIINVGRGAII  250 (330)
Q Consensus       221 ~~t~~li~~~---~l~~mk~-gailIN~~rg~~v  250 (330)
                      ..++.++...   ....+++ +.++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4555554321   4456778 8999999877443

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.20  E-value=2.1e-06  Score=77.99  Aligned_cols=99  Identities=15%  Similarity=0.112  Sum_probs=73.8

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC----CC--CCCCCHHHHhhcCCEEEEeccCC--cccccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV----TY--PFYPDVCELAANSDVLIICCALT--DQTHHL  226 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~----~~--~~~~~l~ell~~aDvV~l~~P~t--~~t~~l  226 (330)
                      +.| +++|||.|.+|++++..|...|. +|.+++|+.++..    ..  ....++.+.++++|+|++++|..  ++ ...
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~~  184 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-ELP  184 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CCS
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CCC
Confidence            578 99999999999999999999999 8999999865321    11  12456778899999999999864  22 223


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      ++.+.   ++++.+++++.-+   ...-+.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44433   5789999999888   455555666665

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.20  E-value=5.9e-07  Score=84.48  Aligned_cols=84  Identities=26%  Similarity=0.317  Sum_probs=64.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----C-----------CCCCCCHHHHhhcCCEEEEeccCCc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----T-----------YPFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~-----------~~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      -.+|+|||+|.||..+|.+|...|.+|.+|+|++....     +           .....++.+ +..+|+|++++|. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            46899999999999999999999999999998753210     1           122356777 8899999999994 5


Q ss_pred             cccccccHHHHhcCC-CCcEEEEcCCCc
Q 020160          222 QTHHLINKQVLLALG-KKGVIINVGRGA  248 (330)
Q Consensus       222 ~t~~li~~~~l~~mk-~gailIN~~rg~  248 (330)
                      .++.+     +..++ ++.++|+++.|-
T Consensus        92 ~~~~v-----~~~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           92 YIREH-----LLRLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             GHHHH-----HTTCSSCCSEEEECCCCC
T ss_pred             HHHHH-----HHHhCcCCCEEEEEeCCC
Confidence            55444     33344 788999998763

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.19  E-value=5.9e-07  Score=82.81  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=72.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC------------CCCCHHHHhh---cCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP------------FYPDVCELAA---NSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~------------~~~~l~ell~---~aDvV~l~~P  218 (330)
                      ++|+|||+|.||..+|..|...|++|.+++++++...     +..            ...+..++.+   .+|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999998753210     110            0013334444   8999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .. .++.++ .+..+.++++.++|+++.|- -..+.+.+.+.+.++.
T Consensus        84 ~~-~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 AQ-QLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             HH-HHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             cc-cHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            54 555554 34556788999999998653 2345566666554443

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.17  E-value=2.5e-06  Score=79.21  Aligned_cols=105  Identities=12%  Similarity=0.147  Sum_probs=74.1

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CC---CC--CCCHHHHhhcCCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TY---PF--YPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~---~~--~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ++.|++++|+|.|.+|+.++..|...|+ +|++++|+.++..      +.   ..  ..++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            3678999999999999999999999998 9999999864311      11   11  12455678899999999997643


Q ss_pred             cc--c-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          223 TH--H-LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       223 t~--~-li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                      ..  . .++   .+.++++.+++|++-.. ... .|.+..++..+
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T-~ll~~A~~~G~  257 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYNP-LET-KWLKEAKARGA  257 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCSS-SSC-HHHHHHHHTTC
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCCC-CCC-HHHHHHHHCcC
Confidence            11  1 233   24578899999998853 233 36666665544

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.04  E-value=9.1e-06  Score=67.11  Aligned_cols=102  Identities=17%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             CCceEEEEec----ChHHHHHHHHHHhCCCEEEEECCC--CCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          157 GGKRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRN--KKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       157 ~g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      +-++|+|||.    |++|..+++.++..|++|...++.  .....+...+.+++|+-...|++++++|. +....+++ +
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~   89 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-E   89 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-H
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-H
Confidence            3578999999    899999999999999997777665  33333555677899998899999999997 56666653 3


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ..+ ...++++++.+..    ++++.+..++..+.
T Consensus        90 ~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           90 VLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             HHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            333 3444676664432    57777777776654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.04  E-value=1.1e-05  Score=67.13  Aligned_cols=95  Identities=15%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             CccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC----CCC---HHHH-hhcCCEEEEec
Q 020160          152 LGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF----YPD---VCEL-AANSDVLIICC  217 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~----~~~---l~el-l~~aDvV~l~~  217 (330)
                      +.....++++.|+|+|.+|+.+|+.|+..|.+|+++++++...      .+...    ..+   +.+. +..+|+|++++
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence            3455778999999999999999999999999999998875431      12111    112   2222 56899999999


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      |.......+  ....+.+.+...+|-..++.
T Consensus        93 ~~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           93 NDDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             SCHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             CCcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            865433322  33445555556666655554

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.04  E-value=3.6e-06  Score=77.19  Aligned_cols=89  Identities=18%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      |+++.|+|.|.+|++++..|...|.+|.+++|+.++..     +.. ..+++++ .++|+|++++|..-.....++.+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~-~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCD-CFMEPPK-SAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCE-EESSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-EecHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence            89999999999999999999999999999999876531     111 1122232 3899999999876433233555432


Q ss_pred             h-cCCCCcEEEEcCCCc
Q 020160          233 L-ALGKKGVIINVGRGA  248 (330)
Q Consensus       233 ~-~mk~gailIN~~rg~  248 (330)
                      . .++++.+++|+....
T Consensus       196 ~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHHCSEEEESCCSS
T ss_pred             HhhCCCCCEEEEeCCCC
Confidence            2 466777888887765

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.01  E-value=7.1e-06  Score=78.86  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=70.5

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCC---EEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGC---CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ...+|.|||. |..|+..++.++++|.   .|..+|++.... +..    + +.+.++|+|+.++........+|+++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v  286 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-GGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKL  286 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-CSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-CCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHH
Confidence            4678999999 9999999999999998   899999875222 221    1 3467999999999987777789999999


Q ss_pred             hcC-CCCcEEEEcC
Q 020160          233 LAL-GKKGVIINVG  245 (330)
Q Consensus       233 ~~m-k~gailIN~~  245 (330)
                      +.| |||+++||++
T Consensus       287 ~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          287 NNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCTTCCCCEEEETT
T ss_pred             hcCcCCCeEEEEEe
Confidence            999 9999999996

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.00  E-value=1.3e-05  Score=66.39  Aligned_cols=101  Identities=18%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             CceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          158 GKRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       158 g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      -++|+|||.    |.+|..+++.|+..|++|...++......+...+.+++|+....|++++++|. +....++. +..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            679999999    79999999999999999777766543333555677899998899999999997 45555543 3333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       234 ~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       ...+.++++.+  .  .++++.+..++..+.
T Consensus       100 -~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A          100 -KGAKVVWFQYN--T--YNREASKKADEAGLI  126 (144)
T ss_dssp             -HTCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             -cCCCEEEECCC--c--hHHHHHHHHHHcCCE
Confidence             33446665533  2  367788888877665

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.00  E-value=8e-07  Score=81.39  Aligned_cols=82  Identities=13%  Similarity=0.019  Sum_probs=54.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEE-EEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|||||+|.||+.+|+.+... ++| .++++++...      .+. ...++++++++||+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999877 888 4888875421      122 44567778889999999999753 2     233


Q ss_pred             HhcC-CCCcEEEEcCCCc
Q 020160          232 LLAL-GKKGVIINVGRGA  248 (330)
Q Consensus       232 l~~m-k~gailIN~~rg~  248 (330)
                      +..+ +++.++||++-+.
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            4444 6889999998553

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.99  E-value=1.9e-06  Score=73.64  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhC-CCEEEEECCCCCCC-----CCCCC----CCC---HHHH--hhcCCEEEEecc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAF-GCCVSYNSRNKKPS-----VTYPF----YPD---VCEL--AANSDVLIICCA  218 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-----~~~~~----~~~---l~el--l~~aDvV~l~~P  218 (330)
                      .++.+++++|+|+|.+|+.+|+.|+.. |++|+++++++...     .+...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            457789999999999999999999998 99999999876431     12211    122   3333  567999999998


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEc
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      ..+.+..+  ...++.+.+...+|..
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          115 HHQGNQTA--LEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SHHHHHHH--HHHHHHTTCCSEEEEE
T ss_pred             ChHHHHHH--HHHHHHHCCCCEEEEE
Confidence            76555443  2356667766666654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.97  E-value=2.3e-05  Score=73.10  Aligned_cols=104  Identities=21%  Similarity=0.291  Sum_probs=74.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------------CC------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------VT------YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~------~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.||..+|..|...|.+|..++|+....            .+      .....+++++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            689999999999999999999999999999875210            00      111245666666899999999976


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      . ++..+ ++....+++++++|.+.-|= -.++.+.+.+...++.
T Consensus        83 ~-~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 E-GADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             T-TCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEE
T ss_pred             C-hHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEE
Confidence            4 34443 44556788889999887662 2346677777655543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.94  E-value=4.2e-05  Score=73.19  Aligned_cols=91  Identities=18%  Similarity=0.263  Sum_probs=74.1

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC----CCCC---C------------CCCCCCCHHHHhhcCCE
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN----KKPS---V------------TYPFYPDVCELAANSDV  212 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~----~~~~---~------------~~~~~~~l~ell~~aDv  212 (330)
                      |+.+...+|.|+|.|..|..+|+.+...|. +|+.+|++    ....   .            ......+|.|.++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            346889999999999999999999999999 89999987    3221   0            11124579999999999


Q ss_pred             EEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       213 V~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ++-+.     ..++++++.++.|+++++++.+|+..
T Consensus       267 lIG~S-----ap~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          267 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             EEEeC-----CCCccCHHHHHhcCCCCEEEEcCCCC
Confidence            88763     13899999999999999999999855

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.91  E-value=2.9e-05  Score=72.60  Aligned_cols=83  Identities=20%  Similarity=0.301  Sum_probs=64.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CC-CEEEEECCCCCCCC---------CC--CCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV---------TY--PFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~---------~~--~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      ..++++|||.|.+|+..++.+.. ++ -+|.+|+|+ +...         +.  ... ++++.+++||+|++|+|..   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence            36799999999999999999875 44 479999999 3211         22  224 8999999999999999864   


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      ..++..   +.++||++++++|..
T Consensus       195 ~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          195 TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             SCSSCG---GGCCTTCEEEECCCS
T ss_pred             CcccCH---HHcCCCcEEEECCCC
Confidence            345553   458999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.90  E-value=4.1e-05  Score=71.16  Aligned_cols=105  Identities=17%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---CCC--------------CCCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---VTY--------------PFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~--------------~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|||.|.||..+|..|...|.+|..++|+....   .+.              ....+.++ +..+|+|++++|...
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~~   81 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTFA   81 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCCC
Confidence            689999999999999999999999999999875210   010              11234544 689999999998653


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 020160          222 QTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA  267 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga  267 (330)
                       ++..+ ++....+++++++|.+.-| +-.++.+.+.+...++.++
T Consensus        82 -~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           82 -NSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             -GGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             -cHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence             44443 3455678889999998776 2235667777765565443

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.89  E-value=2e-05  Score=74.82  Aligned_cols=87  Identities=14%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             CCceEEEEecChHHHHHHHHHH-hCC-CEEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLE-AFG-CCVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~-~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ..+++||||.|.+|+.+++.+. ..+ .+|.+|+|+++...          +  ...+.++++++++||+|++++|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            4679999999999999998875 344 47999999864310          2  2235689999999999999999763 


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      ...++..   +.+++|..++++|..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            3345543   467899999999863

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.87  E-value=8.6e-06  Score=65.59  Aligned_cols=85  Identities=18%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC----CCCHHHH----hhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF----YPDVCEL----AANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~----~~~l~el----l~~aDvV~l~~P~t~~t  223 (330)
                      +++++|+|+|.+|+.+|+.|...|.+|.++++++...      .+...    ..+.+.+    +.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            5799999999999999999999999999998865421      12111    1122222    56899999998865333


Q ss_pred             cccccHHHHhcCCCCcEEEEc
Q 020160          224 HHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~  244 (330)
                      ..+  ....+.++++.+++-+
T Consensus        84 ~~~--~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 LMS--SLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHH--HHHHHHTTCCCEEEEC
T ss_pred             HHH--HHHHHHcCCCEEEEEe
Confidence            222  3455667777666544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.86  E-value=3.9e-05  Score=74.98  Aligned_cols=133  Identities=16%  Similarity=0.154  Sum_probs=83.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CCC-------------CCCCCCHHHHhhcCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SVT-------------YPFYPDVCELAANSD  211 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~~-------------~~~~~~l~ell~~aD  211 (330)
                      +-++|+|||+|-+|..+|..+...|++|+++|.++..            +.+             ..+..+.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            3468999999999999999999999999999976532            001             112456778899999


Q ss_pred             EEEEeccCCcccccccc--------HHHHhcCC---CCcEEEEcCCCcccCHHHHH-HHHHcCCceEEEEe-cCCCCCCC
Q 020160          212 VLIICCALTDQTHHLIN--------KQVLLALG---KKGVIINVGRGAIIDEKEMV-GCLLRGEIGGAGLD-VFENEPDV  278 (330)
Q Consensus       212 vV~l~~P~t~~t~~li~--------~~~l~~mk---~gailIN~~rg~~vd~~aL~-~aL~~g~i~ga~lD-V~~~EP~~  278 (330)
                      ++++|+|......+-.|        +...+.|+   +|.++|.-|.-.+=-.+.+. ..+++.. .|.-++ +|.+|-..
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~  178 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR  178 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence            99999984322222111        22233344   67899998886554444443 3343322 111122 24666654


Q ss_pred             Cc----ccccCCceEE
Q 020160          279 PE----QLFALDNVVL  290 (330)
Q Consensus       279 ~~----~L~~~~nvil  290 (330)
                      +.    .+...++|++
T Consensus       179 eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          179 EGSALEDFFKPDRIVI  194 (444)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             CCccccccccCCcEEE
Confidence            32    3667778763

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.86  E-value=3.7e-06  Score=77.69  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-----C-CEEEEECCCCCC-----C-CCCCCC-------------CCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-----G-CCVSYNSRNKKP-----S-VTYPFY-------------PDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-----G-~~V~~~~~~~~~-----~-~~~~~~-------------~~l~ell~~aDvV  213 (330)
                      ++|+|||+|.||..+|..|...     | .+|++++| +..     . .+....             .+..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999988     9 99999998 321     1 121111             0233567899999


Q ss_pred             EEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHHcCC
Q 020160          214 IICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDE-KEMVGCLLRGE  263 (330)
Q Consensus       214 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~-~aL~~aL~~g~  263 (330)
                      ++++|... ++.++ ++..+.++++.++|++.-|  ++. +.+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc
Confidence            99999764 44443 3455567788999998776  343 55656554433

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.84  E-value=1.9e-05  Score=76.51  Aligned_cols=90  Identities=21%  Similarity=0.280  Sum_probs=70.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC-----C------CCCCCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK-----P------SVTYPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~-----~------~~~~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -|+||||+|||+|+=|++=|..|+-.|.+|++--|...     +      ..++. ..+..|..++||+|.+.+|...+.
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~-v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE-EEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE-ecCHHHHHHhCCEEEEeCChhhHH
Confidence            38999999999999999999999999999976544211     1      12333 357899999999999999976555


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCc
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      . +. ++..+.||+|+.|. .|.|=
T Consensus       113 ~-vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          113 D-VV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H-HH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             H-HH-HHHHhhCCCCCEEE-ecCcc
Confidence            4 34 56999999999887 45553

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.84  E-value=6.6e-06  Score=67.41  Aligned_cols=84  Identities=14%  Similarity=0.048  Sum_probs=59.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCC---HHHH-hhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPD---VCEL-AANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~el-l~~aDvV~l~~P~t~~t~  224 (330)
                      ..++.|+|+|.+|+.+|+.|+..|++|++++++++..     .+...    ..+   +.++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            4589999999999999999999999999999876531     12211    112   2221 468999999999776655


Q ss_pred             ccccHHHHhcCCCCcEEEE
Q 020160          225 HLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN  243 (330)
                      .+  ...++.+.++..+|-
T Consensus        87 ~~--~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           87 EI--VASARAKNPDIEIIA  103 (140)
T ss_dssp             HH--HHHHHHHCSSSEEEE
T ss_pred             HH--HHHHHHHCCCCeEEE
Confidence            44  335566666666654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.77  E-value=8.6e-06  Score=76.56  Aligned_cols=87  Identities=18%  Similarity=0.270  Sum_probs=64.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC----CCCC-------------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP----SVTY-------------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~-------------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .++|+|||+|.||..+|..|...|.+|.+++|....    ..+.             ....++++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            478999999999999999999999999999985211    0111             11246666 5899999999986 


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      ..++.++ ++....+++++++|.+.-|
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence            3555443 2344567789999999888

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.77  E-value=2.2e-05  Score=73.32  Aligned_cols=100  Identities=19%  Similarity=0.280  Sum_probs=68.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CC-------------CCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VT-------------YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~-------------~~~~~~l~ell~~aDvV~l~~  217 (330)
                      ...++|+|||.|.||..+|..|...|.+|..+ ++++..     .+             .....++++ +..+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            35679999999999999999999999999998 554310     01             011234544 58999999999


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      |.. .++.++ ++....+++++++|.+.-|= -.++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            975 555554 34556678899999987763 22345666654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.75  E-value=1.4e-05  Score=64.45  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=57.4

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-----CCCCC----CCCCHH---HH-hhcCCEEEEeccCCcc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVTYP----FYPDVC---EL-AANSDVLIICCALTDQ  222 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~----~~~~l~---el-l~~aDvV~l~~P~t~~  222 (330)
                      +.++++.|+|+|.+|+.+++.|...|++|.++++++..     ..+..    ...+.+   ++ +.++|+|++++|...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            56789999999999999999999999999998876432     11111    112222   22 5689999999886422


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      +. +.-....+.+.+. .+|-...+.
T Consensus        84 ~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 AS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             HH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            21 1123445556665 455444443

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.72  E-value=0.00016  Score=66.83  Aligned_cols=78  Identities=21%  Similarity=0.329  Sum_probs=63.9

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+. +|+.+|..|...|+.|+.+...         ..++.+.+++||+|+.++.-    .++|..+ 
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------T~dl~~~~~~ADIvV~A~G~----p~~i~~d-  239 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------TQNLPELVKQADIIVGAVGK----AELIQKD-  239 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------CSSHHHHHHTCSEEEECSCS----TTCBCGG-
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC---------CCCHHHHhhcCCeEEeccCC----CCccccc-
Confidence            4468999999999775 5999999999999999877543         24799999999999988643    3467764 


Q ss_pred             HhcCCCCcEEEEcCC
Q 020160          232 LLALGKKGVIINVGR  246 (330)
Q Consensus       232 l~~mk~gailIN~~r  246 (330)
                        ..|+|+++||+|-
T Consensus       240 --~vk~GavVIDVGi  252 (303)
T 4b4u_A          240 --WIKQGAVVVDAGF  252 (303)
T ss_dssp             --GSCTTCEEEECCC
T ss_pred             --cccCCCEEEEece
Confidence              4789999999985

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.68  E-value=1.6e-05  Score=62.04  Aligned_cols=64  Identities=16%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCC-----CCC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPS-----VTY-------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~-----~~~-------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .+++++|+|.|.||+.+++.|...| ++|.++++++...     .+.       ....++.++++++|+|+.++|..
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~   80 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF   80 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch
Confidence            4689999999999999999999999 8999999875421     111       11134556778899999988744

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.68  E-value=3.4e-05  Score=72.30  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=74.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------C----C----------CCCCCCHHHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------V----T----------YPFYPDVCEL  206 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~----~----------~~~~~~l~el  206 (330)
                      .-.+|+|||.|.||+.+|..+...|++|+.+|++++..                .    +          .....++.+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            35689999999999999999999999999999875420                0    0          0123578889


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      ++.||+|+=++|.+-+.+.-+-++.=+.++++++|-.-+++  +....+..++.
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~  136 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLA  136 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCT
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhcc
Confidence            99999999999988776654445555668899887554443  44566666553

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.66  E-value=7.7e-05  Score=69.91  Aligned_cols=82  Identities=16%  Similarity=0.160  Sum_probs=63.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHh-CC-CEEEEECCCCCCCC-----------CCCCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEA-FG-CCVSYNSRNKKPSV-----------TYPFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~~-----------~~~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      ..++++|||.|.+|+.+++.+.. .+ -+|.+|+|+++...           ... +.++++++ ++|+|++++|...  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~--  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK--  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence            46799999999999999998876 44 47899999865321           123 56888999 9999999999643  


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                       .++..   +.+++|..++++|.
T Consensus       200 -pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          200 -PVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             -CCBCG---GGCCTTCEEEECSC
T ss_pred             -ceecH---HHcCCCeEEEECCC
Confidence             45543   46889999999964

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.61  E-value=2.6e-05  Score=74.98  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=61.3

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEEEEC---CCCCC------CCC---------C---------C-CCCCHHHHhhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYNS---RNKKP------SVT---------Y---------P-FYPDVCELAAN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~---~~~~~------~~~---------~---------~-~~~~l~ell~~  209 (330)
                      ++|+|||.|.||..+|..|.. .|.+|.+++   ++++.      ..+         .         . ...++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999977 599999999   53211      001         1         0 23467788899


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEc
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      +|+|++++|... .+.++ ++....+++++++|..
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999654 34443 3455567889999985

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.58  E-value=0.00013  Score=66.56  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=60.9

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CC--C-CCCCHHHHh-hcCCEEEEeccCCcccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TY--P-FYPDVCELA-ANSDVLIICCALTDQTH  224 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~--~-~~~~l~ell-~~aDvV~l~~P~t~~t~  224 (330)
                      ++.|+++.|+|.|.+|+++|+.|...|.+|++++|+.+...      +.  . ...+++++. .++|+|+.++|..... 
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-  194 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-  194 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-
Confidence            36789999999999999999999999999999998754211      10  0 012233333 5899999999865431 


Q ss_pred             cc--ccHHHHhcCCCCcEEEEcCCCc
Q 020160          225 HL--INKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       225 ~l--i~~~~l~~mk~gailIN~~rg~  248 (330)
                      .+  +..+   .++++.+++|+.-..
T Consensus       195 ~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CCCCCCHH---HcCCCCEEEEeccCC
Confidence            11  2222   246777777776654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.57  E-value=3e-05  Score=71.43  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CC---CCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TY---PFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~---~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      ++.|+++.|+|.|.+|++++..|...|+ +|.+++|+.++..      +.   ....+++++..++|+|+.++|..-...
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            4789999999999999999999999997 9999999764311      00   012245555578999999998763321


Q ss_pred             -ccccHHHHhcCCCCcEEEEcCCCc
Q 020160          225 -HLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       225 -~li~~~~l~~mk~gailIN~~rg~  248 (330)
                       ..+..   +.++++.+++++.-..
T Consensus       203 ~~~l~~---~~l~~~~~V~DlvY~P  224 (281)
T 3o8q_A          203 LPAIDP---VIFSSRSVCYDMMYGK  224 (281)
T ss_dssp             -CSCCG---GGEEEEEEEEESCCCS
T ss_pred             CCCCCH---HHhCcCCEEEEecCCC
Confidence             12332   3456777778876554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.56  E-value=3e-05  Score=63.06  Aligned_cols=85  Identities=15%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----CCCCHHHH----hhcCCEEEEeccCCccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----FYPDVCEL----AANSDVLIICCALTDQT  223 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~l~el----l~~aDvV~l~~P~t~~t  223 (330)
                      .++++.|+|+|.+|+.+|+.|...|++|++++++++..     .+..    ...+.+.+    +.++|+|++++|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            46799999999999999999999999999999876421     1111    11122222    35789999888843322


Q ss_pred             cccccHHHHhcCCCCcEEEE
Q 020160          224 HHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN  243 (330)
                        +.-....+.+....+++-
T Consensus        85 --~~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           85 --LKILKALRSVSDVYAIVR  102 (141)
T ss_dssp             --HHHHHHHHHHCCCCEEEE
T ss_pred             --HHHHHHHHHhCCceEEEE
Confidence              222344555553344443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.55  E-value=3.2e-05  Score=70.65  Aligned_cols=66  Identities=14%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CC--C-CCCCHHHHhh-cCCEEEEeccCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TY--P-FYPDVCELAA-NSDVLIICCALT  220 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~--~-~~~~l~ell~-~aDvV~l~~P~t  220 (330)
                      ++.|++++|+|.|.+|++++..|...|.+|++++|+.++..      +.  . ...+++++.+ ++|+|+.++|..
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCC
Confidence            36789999999999999999999999999999999854211      00  0 0112333333 788888888765

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.53  E-value=4.3e-05  Score=71.32  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CCCCCCHHHHhhcCCEEEEeccC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------T--YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .++|+|||.|.||..+|..+...|+ +|..+|++++...               .  .....++ +.++.||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998888 9999998764211               0  1112455 678999999999842


Q ss_pred             Cc--------------c-ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEE
Q 020160          220 TD--------------Q-THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL--RGEIGGA  267 (330)
Q Consensus       220 t~--------------~-t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~--~g~i~ga  267 (330)
                      ..              . .+.+  .+.+....|++++|+++-..-+....+.+...  ..++.|.
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i--~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~  145 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSV--AEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM  145 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHH--HHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCCcHHHHHHhhHHHHHHH--HHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence            21              1 1111  11223335799999998765454555555441  2345444

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.53  E-value=0.00034  Score=68.24  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCC---EEEEEC----CC----CCCC---C-CC--------C---CCCCHHHH
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGC---CVSYNS----RN----KKPS---V-TY--------P---FYPDVCEL  206 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~---~V~~~~----~~----~~~~---~-~~--------~---~~~~l~el  206 (330)
                      |.++.++++.|+|.|..|+.+++.|...|.   +|+.+|    |+    ....   . ..        .   ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            345789999999999999999999999998   798888    76    2211   0 00        0   13468899


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      ++++|+|+.+.|..+   +++.++.++.|++++++++++...  .+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            999999999987532   456667788899999999995433  4444555555554

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.51  E-value=0.00013  Score=67.23  Aligned_cols=89  Identities=17%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CCCC--CCCHHHHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TYPF--YPDVCELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~~~--~~~l~ell~~aDvV~l~~P  218 (330)
                      ++.|+++.|+|.|.+|++++..|...|. +|.+++|+.++..             ....  ..++.+.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4789999999999999999999999999 7999999864311             0111  2378888999999999998


Q ss_pred             CCcccc--ccccHHHHhcCCCCcEEEEcCC
Q 020160          219 LTDQTH--HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t~~t~--~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..-...  -.+.   .+.++++.+++++.-
T Consensus       204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY  230 (283)
T 3jyo_A          204 MGMPAHPGTAFD---VSCLTKDHWVGDVVY  230 (283)
T ss_dssp             TTSTTSCSCSSC---GGGCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCC---HHHhCCCCEEEEecC
Confidence            642111  1122   233456666666544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.51  E-value=0.00017  Score=59.56  Aligned_cols=86  Identities=6%  Similarity=-0.078  Sum_probs=57.1

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---------CCCCC-------CCCCHHHH-hhcCCEEEEeccC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---------SVTYP-------FYPDVCEL-AANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------~~~~~-------~~~~l~el-l~~aDvV~l~~P~  219 (330)
                      .++++.|+|+|.+|+.+++.|...|++|++.++++..         ..+..       ....+.+. +..+|.|+++++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            3578999999999999999999999999999886410         11111       01224444 7789999999876


Q ss_pred             CccccccccHHHHhcCCCCcEEEEc
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~  244 (330)
                      .+.+..  -....+.+.+...+|..
T Consensus        82 d~~n~~--~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           82 DADNAF--VVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHH--HHHHHHHHTSSSCEEEE
T ss_pred             hHHHHH--HHHHHHHHCCCCEEEEE
Confidence            544332  24455566454444443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.50  E-value=1.8e-05  Score=72.93  Aligned_cols=90  Identities=22%  Similarity=0.213  Sum_probs=63.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC---CCCCHHHHh-hcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP---FYPDVCELA-ANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~---~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      ++|+|||.|.||..+|..|...|.+|..++|+.+..     .+..   ...+..+.+ ..+|+|++++|.. .++..+ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            689999999999999999998899999999875321     1110   011233443 7899999999865 444444 2


Q ss_pred             HHHhcCCCCcEEEEcCCCccc
Q 020160          230 QVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~v  250 (330)
                      +....+++++++|.+.-|=-.
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCC
T ss_pred             HHHHhhCCCCEEEEeccCccc
Confidence            344556788899998877443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.49  E-value=0.00028  Score=67.62  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=87.4

Q ss_pred             CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160          103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC  182 (330)
Q Consensus       103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  182 (330)
                      +|++.|+ +.+  -+|=-+++-+++.+|-                    .|+.+...+|.|+|.|..|..+|+.+.++|.
T Consensus       156 ~ipvf~D-Diq--GTa~V~lAall~al~l--------------------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga  212 (398)
T 2a9f_A          156 HIPVFHD-DQH--GTAIVVLAAIFNSLKL--------------------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGA  212 (398)
T ss_dssp             SSCEEEH-HHH--HHHHHHHHHHHHHHHT--------------------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             Ccceecc-hhh--hHHHHHHHHHHHHHHH--------------------hCCCCCccEEEEECCCHHHHHHHHHHHHcCC
Confidence            5888883 222  2344455555555551                    1456888999999999999999999999999


Q ss_pred             -EEEEECCCC-----C-C-CCC-----------CCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160          183 -CVSYNSRNK-----K-P-SVT-----------YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       183 -~V~~~~~~~-----~-~-~~~-----------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                       +|+.+|++.     + . ...           .....+|.|.++.+|+++=.     .+.+++.++.++.|+++++++.
T Consensus       213 ~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~-----Sapgl~T~EmVk~Ma~~pIIfa  287 (398)
T 2a9f_A          213 TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGV-----SAPGVLKAEWISKMAARPVIFA  287 (398)
T ss_dssp             CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEEC-----CSTTCCCHHHHHTSCSSCEEEE
T ss_pred             CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEec-----CCCCCCCHHHHHhhCCCCEEEE
Confidence             999998863     1 1 111           01134699999999988765     2358999999999999999999


Q ss_pred             cCCCc
Q 020160          244 VGRGA  248 (330)
Q Consensus       244 ~~rg~  248 (330)
                      +|+..
T Consensus       288 lsNPt  292 (398)
T 2a9f_A          288 MANPI  292 (398)
T ss_dssp             CCSSS
T ss_pred             CCCCC
Confidence            99865

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.49  E-value=9.1e-05  Score=68.44  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             CceEEEEecChHHHH-HHHHHHh-CCCEEE-EECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          158 GKRVGIVGLGSIGSE-VAKRLEA-FGCCVS-YNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       158 g~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      -.++||||+|.||+. .++.++. -++++. ++|+++...      .+...+.++++++++.|+|++++|.....+..  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            368999999999996 8888876 467876 688876432      13344789999999999999999966443322  


Q ss_pred             HHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCCc
Q 020160          229 KQVLLALGKKG-VIIN-VGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       229 ~~~l~~mk~ga-ilIN-~~rg~~vd~~aL~~aL~~g~i  264 (330)
                         ...++.|. +++. -.--++-+.++|.++.++..+
T Consensus        84 ---~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           84 ---KILLNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             ---HHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence               22334443 4443 122344455667777766554

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.44  E-value=5.9e-05  Score=70.09  Aligned_cols=62  Identities=27%  Similarity=0.358  Sum_probs=47.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC---------------CCCC-CCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV---------------TYPF-YPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~---------------~~~~-~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.||..+|..|...|  .+|..+|++.+...               .... ..++ +.++.||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998778  68999998753210               0111 2455 6789999999999864


Q ss_pred             c
Q 020160          221 D  221 (330)
Q Consensus       221 ~  221 (330)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.44  E-value=0.00019  Score=65.71  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CC--CCCCCHHHHh-hcCCEEEEeccCCccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TY--PFYPDVCELA-ANSDVLIICCALTDQT  223 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~--~~~~~l~ell-~~aDvV~l~~P~t~~t  223 (330)
                      .++.|+++.|+|.|.+|++++..|...|. +|.+++|+.++..      ..  ....+++++- .++|+|+.++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            35789999999999999999999999996 9999999864311      10  0112333433 6899999998865321


Q ss_pred             c-ccccHHHHhcCCCCcEEEEcCCC
Q 020160          224 H-HLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       224 ~-~li~~~~l~~mk~gailIN~~rg  247 (330)
                      . -.+..   +.++++.+++++.-.
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYG  217 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCS
T ss_pred             CCCCCCH---HHhCcCCEEEEeecC
Confidence            1 12222   234566666666543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.40  E-value=0.00012  Score=68.41  Aligned_cols=65  Identities=18%  Similarity=0.302  Sum_probs=51.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCCCCCCHHHHhh--cCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTYPFYPDVCELAA--NSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~  224 (330)
                      .+|||||+|.||+..++.+... ++++. ++|+++...      .+.. +.+++++++  +.|+|++++|......
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~   78 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHAD   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHH
Confidence            5899999999999999999875 77876 688876431      1334 679999998  7999999998665433

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.40  E-value=0.0003  Score=66.10  Aligned_cols=89  Identities=18%  Similarity=0.112  Sum_probs=61.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------C----CCCCCCHHHHhhcCCEEEEec--
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------T----YPFYPDVCELAANSDVLIICC--  217 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~----~~~~~~l~ell~~aDvV~l~~--  217 (330)
                      .++|+|||.|.+|..+|..|...|+ +|..+|++.+...             .    .....++++.++.||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4699999999999999999998887 9999998764211             1    111257877899999999998  


Q ss_pred             cCCccc------ccc-c--c----H---HHHhcCCCCcEEEEcCC
Q 020160          218 ALTDQT------HHL-I--N----K---QVLLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~t~~t------~~l-i--~----~---~~l~~mk~gailIN~~r  246 (330)
                      |..+.-      +-- +  +    .   +.+....|.+++|+++-
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            654422      110 0  0    1   12333458899998754

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.39  E-value=0.00035  Score=64.77  Aligned_cols=102  Identities=21%  Similarity=0.274  Sum_probs=68.9

Q ss_pred             ceEEEEecChHHHH-HHHHHHh-CCCEEE-EECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEA-FGCCVS-YNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .+|||||+|.||+. +++.++. -|+++. ++++++....      +...+.+.+++..++|+|++++|......     
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~-----   80 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD-----   80 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH-----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHH-----
Confidence            58999999999997 8888875 367875 7888765421      33356678877678999999999654332     


Q ss_pred             HHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 020160          230 QVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       230 ~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      -....++.|. +++.- .-.++-+.++|.++.++..+.
T Consensus        81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            2233355564 56652 223444566788888776654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.00019  Score=68.98  Aligned_cols=88  Identities=15%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--------CEEEEECCCCCCC------------------CCC------CCCCCHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--------CCVSYNSRNKKPS------------------VTY------PFYPDVCEL  206 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--------~~V~~~~~~~~~~------------------~~~------~~~~~l~el  206 (330)
                      .||+|||.|.+|.++|..|...|        .+|..|.|+++..                  ++.      ....++++.
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a  114 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS  114 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence            38999999999999999997544        3688887764310                  011      123578999


Q ss_pred             hhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 020160          207 AANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ++.||+|++++|. +..+.++ ++....++++..+|+++-|=
T Consensus       115 l~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          115 VKDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             HTTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             HhcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            9999999999994 4555543 34556678899999999884

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.36  E-value=0.00024  Score=66.56  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCCCCCCHHHHhh--cCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTYPFYPDVCELAA--NSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~  224 (330)
                      .+|||||+|.||+..++.++.. ++++. ++++++...      .+...+.+++++++  +.|+|++++|......
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~   80 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVD   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHH
Confidence            5899999999999999999876 67776 678775431      13345679999998  8999999998765433

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.36  E-value=8.1e-05  Score=69.60  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCC-CCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------------TYP-FYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------------~~~-~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|||.|.||..+|..|...|+  +|..+|++++...              ... ...+ .+.++.||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            489999999999999999988888  9999998753210              000 0123 356789999999998644


Q ss_pred             cc---c-ccc------cHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCceEE
Q 020160          222 QT---H-HLI------NKQV---LLALGKKGVIINVGRGAIIDEKEMVGCL--LRGEIGGA  267 (330)
Q Consensus       222 ~t---~-~li------~~~~---l~~mk~gailIN~~rg~~vd~~aL~~aL--~~g~i~ga  267 (330)
                      ..   + .++      -.+.   +....|++++|+++-+.=+....+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            21   1 000      0222   2223578898887554322222222322  34466554

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.34  E-value=0.00018  Score=67.82  Aligned_cols=66  Identities=15%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCCCCCCHHHHh--hcCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTYPFYPDVCELA--ANSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~ell--~~aDvV~l~~P~t~~t~  224 (330)
                      .+|||||+|.||+..++.++.. |+++. ++|+++...      .+...+.++++++  .+.|+|++++|......
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~   81 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAE   81 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            5899999999999999999887 78865 678876432      1444578999999  56999999999765543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.33  E-value=0.0002  Score=66.91  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC---CCC----------CC----CCCCC---HHHHhhcCCEE
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK---PSV----------TY----PFYPD---VCELAANSDVL  213 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~---~~~----------~~----~~~~~---l~ell~~aDvV  213 (330)
                      ++.|+++.|+|.|.+|++++..|...|. +|.+++|+.+   +..          +.    ..+.+   +.+.+.++|+|
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            4789999999999999999999999999 8999999832   110          00    01222   45567889999


Q ss_pred             EEeccCCcc--cc-ccccHHHHhcCCCCcEEEEcCCC
Q 020160          214 IICCALTDQ--TH-HLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       214 ~l~~P~t~~--t~-~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +.++|..=.  .. ..+.  ....++++.+++++.-.
T Consensus       231 INaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~  265 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYK  265 (315)
T ss_dssp             EECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCS
T ss_pred             EECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccC
Confidence            999885411  11 1120  12335666666666543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.30  E-value=0.00048  Score=62.28  Aligned_cols=100  Identities=15%  Similarity=0.183  Sum_probs=70.3

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEE-EECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      -+.++|+++|+|.||+.+++.  . ++++. +|+ ......+.....+++++++++|+|+=|.+. +.    +.+...+.
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~gelgv~a~~d~d~lla~pD~VVe~A~~-~a----v~e~~~~i   80 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISKDIPGVVRLDEFQVPSDVSTVVECASP-EA----VKEYSLQI   80 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCCCCSSSEECSSCCCCTTCCEEEECSCH-HH----HHHHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccccccCceeeCCHHHHhhCCCEEEECCCH-HH----HHHHHHHH
Confidence            467899999999999999998  4 88764 555 221122333456788988899999877632 22    22335666


Q ss_pred             CCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 020160          235 LGKKGVIINVGRGAIIDE---KEMVGCLLRGEI  264 (330)
Q Consensus       235 mk~gailIN~~rg~~vd~---~aL~~aL~~g~i  264 (330)
                      ++.|.-+|-+|-|.+.|.   +.|.++.++|.-
T Consensus        81 L~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~  113 (253)
T 1j5p_A           81 LKNPVNYIIISTSAFADEVFRERFFSELKNSPA  113 (253)
T ss_dssp             TTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSC
T ss_pred             HHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCC
Confidence            888999999998888887   456666666653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.30  E-value=0.00017  Score=66.38  Aligned_cols=89  Identities=16%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC----CC--CCCCCHHHHhhcCCEEEEeccCC--cccc-
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV----TY--PFYPDVCELAANSDVLIICCALT--DQTH-  224 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~----~~--~~~~~l~ell~~aDvV~l~~P~t--~~t~-  224 (330)
                      ++.|+++.|+|.|.+|++++..|...|. +|.+++|+.++..    ..  ..+.++.+ + ++|+|++++|..  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4689999999999999999999999999 8999999864321    11  11122333 4 899999999863  2211 


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCc
Q 020160          225 HLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      -.+..+.   ++++.+++++.-..
T Consensus       197 ~pi~~~~---l~~~~~v~DlvY~P  217 (282)
T 3fbt_A          197 SPVDKEV---VAKFSSAVDLIYNP  217 (282)
T ss_dssp             CSSCHHH---HTTCSEEEESCCSS
T ss_pred             CCCCHHH---cCCCCEEEEEeeCC
Confidence            1244443   46788888886543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.29  E-value=0.00048  Score=61.99  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=56.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEE-EECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGK  237 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~  237 (330)
                      .+|+|+|+|+||+.+++.+...+.++. ++++......+...+.++++++ ++|+++-..+. ..+.     +.+. ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH-Hhc
Confidence            589999999999999999987766765 4788765545566667888888 99998744321 1222     2334 677


Q ss_pred             CcEEEEcCCC
Q 020160          238 KGVIINVGRG  247 (330)
Q Consensus       238 gailIN~~rg  247 (330)
                      |.-+|....|
T Consensus        76 g~~vVigTTG   85 (243)
T 3qy9_A           76 HLPLVVATTG   85 (243)
T ss_dssp             CCCEEECCCS
T ss_pred             CCceEeCCCC
Confidence            7666655555

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.29  E-value=0.00047  Score=63.56  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEE-EECCCCC--CCCCCCCCCCHHHHhh--cCCEEEEeccCCccccccccHHH
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVS-YNSRNKK--PSVTYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ..+|+|+|+ |++|+..++.++..|++++ .+++...  ...+...+.+++|+..  ..|++++++|...... .+ .+.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~-~~-~ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKD-SI-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHH-HH-HHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHH-HH-HHH
Confidence            468999999 9999999999998899854 5565421  1224445778999998  8999999999653332 22 223


Q ss_pred             HhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRGA-IIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg~-~vd~~aL~~aL~~g~i~  265 (330)
                      ++ .... .+|..+-|- .-+.+.|.++.++..+.
T Consensus        85 ~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 ID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            33 2222 334444443 33455788888776653

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.29  E-value=0.00022  Score=66.62  Aligned_cols=66  Identities=20%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCC-CCCCCHHHHhh--cCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTY-PFYPDVCELAA--NSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~-~~~~~l~ell~--~aDvV~l~~P~t~~t  223 (330)
                      -.++||||+|.||+..++.++.. +++|. ++|+++...      .+. ..+.+++++++  +.|+|++++|.....
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~   81 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHY   81 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHH
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHH
Confidence            36899999999999999999875 67776 678775431      133 35679999998  799999999976543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.29  E-value=0.00049  Score=64.59  Aligned_cols=60  Identities=28%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .++|+|||.|.+|..+|..+...|+ +|..+|++.+...               .  .....++ +.++.||+|+++++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            3699999999999999999998898 9999999764311               0  1112456 77899999999983

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.29  E-value=0.00039  Score=64.65  Aligned_cols=61  Identities=23%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             ceEEEEecChHHHHHHHHHHh--CCCEEEEECCCCCCCC---------------C--CCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--FGCCVSYNSRNKKPSV---------------T--YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~~~~~~~~~---------------~--~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++|+|||.|.+|..+|..+..  +|.+|..+|++++...               .  .....+.++ ++.||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            489999999999999999986  5889999999764211               0  011245666 8999999999974


Q ss_pred             C
Q 020160          220 T  220 (330)
Q Consensus       220 t  220 (330)
                      .
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.26  E-value=0.00066  Score=63.30  Aligned_cols=64  Identities=19%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCCC------CCC-CCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV------TYP-FYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~------~~~-~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+..++.++.. ++++. ++++++....      +.. .+.+++++++  +.|+|++++|....
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDH   80 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            5899999999999999988765 55664 6788765432      222 4678999998  79999999986544

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.20  E-value=0.00069  Score=63.42  Aligned_cols=59  Identities=20%  Similarity=0.145  Sum_probs=46.2

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .++|+|||.|.+|..+|..+...|+ +|..+|.+.+...               .  .....+. +.++.||+|++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            3689999999999999999998888 8999998764210               1  1112456 7789999999998

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.19  E-value=0.00033  Score=65.18  Aligned_cols=101  Identities=21%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             ceEEEEecChHHHHH-HHHHHhCCCEEE-EECCCCCCC------CCC-CCCCCHHHHhh--cCCEEEEeccCCccccccc
Q 020160          159 KRVGIVGLGSIGSEV-AKRLEAFGCCVS-YNSRNKKPS------VTY-PFYPDVCELAA--NSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~-A~~l~~~G~~V~-~~~~~~~~~------~~~-~~~~~l~ell~--~aDvV~l~~P~t~~t~~li  227 (330)
                      .++||||+|.||+.+ ++.++..|+++. ++++++...      .+. ..+.+++++++  ++|+|++++|......   
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~---   77 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE---   77 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH---
Confidence            379999999999998 777766788875 678875431      133 24678999987  4999999998553322   


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 020160          228 NKQVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       228 ~~~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i  264 (330)
                        -....++.|. +++.- ...+.-+.++|.++.++..+
T Consensus        78 --~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           78 --QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             --HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence              2223345564 44432 12233334556665554443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.18  E-value=0.00017  Score=63.13  Aligned_cols=83  Identities=11%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC----CC---CHHHH-hhcCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF----YP---DVCEL-AANSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~----~~---~l~el-l~~aDvV~l~~P~t~~t~  224 (330)
                      +++.|+|+|.+|+.+|+.|...|.+|++++++++..      .+...    ..   .+.+. +.++|+|++++|....+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            479999999999999999999999999999876421      11110    11   23333 678999999998665443


Q ss_pred             ccccHHHHhcCCCCcEEEE
Q 020160          225 HLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN  243 (330)
                      .+  ....+.+.+...+|-
T Consensus        81 ~~--~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           81 FI--AQLVMKDFGVKRVVS   97 (218)
T ss_dssp             HH--HHHHHHTSCCCEEEE
T ss_pred             HH--HHHHHHHcCCCeEEE
Confidence            22  344444444444443

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.15  E-value=0.00012  Score=67.17  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCC----------C-----CCCCHHHHhhcCCEEEEeccC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY----------P-----FYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~----------~-----~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++.|+++.|+|.|.||+++|+.|...| +|++++|+.+.....          .     ...++.+.+.++|+|++++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            367899999999999999999999999 999999875421100          0     011123456789999999886


Q ss_pred             Ccccc---ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          220 TDQTH---HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       220 t~~t~---~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      .....   ..+.  ..+.++++.+++|+.-... .. .|.+..++..
T Consensus       204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p~-~t-~ll~~a~~~G  246 (287)
T 1nvt_A          204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNPL-ET-VLLKEAKKVN  246 (287)
T ss_dssp             TCTTCCSSCCSS--CSTTCCSSSEEEECCCSSS-SC-HHHHHHHTTT
T ss_pred             CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCCc-cC-HHHHHHHHCC
Confidence            54211   0120  1345778888888876432 22 3444444433

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.15  E-value=0.00034  Score=65.60  Aligned_cols=64  Identities=25%  Similarity=0.450  Sum_probs=49.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCCC------CC-CCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV------TY-PFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      .+|||||+|.||+..++.++.. ++++. ++|+++....      +. ..+.+++++++  ++|+|++++|....
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   77 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch
Confidence            4899999999999999999875 67776 6788754321      32 24679999998  79999999986544

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.14  E-value=0.00061  Score=64.99  Aligned_cols=61  Identities=28%  Similarity=0.399  Sum_probs=47.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-CC------CCCC---CHHHHhhcCCEEEE
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TY------PFYP---DVCELAANSDVLII  215 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~------~~~~---~l~ell~~aDvV~l  215 (330)
                      -+.|+||+|+|.|.+|+.+++.++.+|++|+++|+++.... ..      ..+.   .+.++++++|+|+.
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            46899999999999999999999999999999987654321 00      0122   36678899999865

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.12  E-value=0.0002  Score=67.56  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=51.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYPFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      -.++||||+|.||+..++.++..  ++++. ++|+++...      .+...+.+++++++  +.|+|++++|....
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGH
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHH
Confidence            36899999999999999999877  78865 778876432      13445679999997  79999999986544

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.12  E-value=0.00043  Score=55.74  Aligned_cols=99  Identities=21%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             ceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          159 KRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       159 ~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      ++++|||.    |+.|..+.+.|+..|++|+.+++......+...+.++.|+-. -|++++++|.. .+..++. +. ..
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~-~v~~~v~-e~-~~   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQ-NQLSEYN-YI-LS   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHH-HHGGGHH-HH-HH
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHH-HHHHHHH-HH-Hh
Confidence            68999997    569999999999999999988887655556666778888878 99999999853 4455543 23 33


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       235 mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +...+++++.|-    .++++.+..++..+.
T Consensus        81 ~g~k~v~~~~G~----~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           81 LKPKRVIFNPGT----ENEELEEILSENGIE  107 (122)
T ss_dssp             HCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             cCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence            444567765432    346677777776665

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.11  E-value=0.00037  Score=64.65  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC--------CCC------CC-CCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS--------VTY------PF-YPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~--------~~~------~~-~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|||.|.+|..+|..+...|+  +|..+|++....        ...      .. ..+ .+.++.||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998898  999999875311        000      00 123 356899999999995432


Q ss_pred             c---c--------ccccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 020160          222 Q---T--------HHLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA  267 (330)
Q Consensus       222 ~---t--------~~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga  267 (330)
                      .   +        -.++.  .+.+....|++++|+++-+.=+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1   0        00100  122333468899998765443333444444445566544

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.11  E-value=0.00096  Score=62.25  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEE-EEECCCCCCCC--CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCV-SYNSRNKKPSV--TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V-~~~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      .+|||||+|+||+.+++.+... ++++ .++++++....  +...+.++++++.++|+|++++|.....     +.....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHHHH
Confidence            4899999999999999999876 5775 46777644321  1222457788888899999999865332     334455


Q ss_pred             CCCCcEEEEcCCCcc-c-CH-HHHHHHHHcCCc
Q 020160          235 LGKKGVIINVGRGAI-I-DE-KEMVGCLLRGEI  264 (330)
Q Consensus       235 mk~gailIN~~rg~~-v-d~-~aL~~aL~~g~i  264 (330)
                      ++.|.-+|...-..+ + +. +.|.++.+++..
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~  111 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCC
Confidence            666765555443332 2 22 456666665543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.06  E-value=0.001  Score=62.09  Aligned_cols=66  Identities=18%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC---CC----------CC----CCCCCH---HHHhhcCCEE
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP---SV----------TY----PFYPDV---CELAANSDVL  213 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---~~----------~~----~~~~~l---~ell~~aDvV  213 (330)
                      ++.|+++.|+|.|.+|++++..|...|. +|.+++|+.+.   ..          +.    ....++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            4789999999999999999999999999 89999998332   10          00    012343   5567889999


Q ss_pred             EEeccCC
Q 020160          214 IICCALT  220 (330)
Q Consensus       214 ~l~~P~t  220 (330)
                      +.++|..
T Consensus       225 INaTp~G  231 (312)
T 3t4e_A          225 TNGTKVG  231 (312)
T ss_dssp             EECSSTT
T ss_pred             EECCcCC
Confidence            9998864

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.05  E-value=0.0077  Score=55.95  Aligned_cols=90  Identities=10%  Similarity=0.167  Sum_probs=66.3

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC-CCC---------CCCCCCCHHHHhhcCCEEEEec----cC-
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK-PSV---------TYPFYPDVCELAANSDVLIICC----AL-  219 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~-~~~---------~~~~~~~l~ell~~aDvV~l~~----P~-  219 (330)
                      +.|.||++|| .+++.++.+..+..+|++|.+..+..- +..         .+....++++.++++|+|..-.    .. 
T Consensus       152 l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e  231 (309)
T 4f2g_A          152 IRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFE  231 (309)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcch
Confidence            7899999999 678999999999999999988766421 111         1123568999999999998743    00 


Q ss_pred             --Cc-----cccccccHHHHhcCCCCcEEEEcC
Q 020160          220 --TD-----QTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       220 --t~-----~t~~li~~~~l~~mk~gailIN~~  245 (330)
                        .+     -...-++.+.++.+|++++|.-+.
T Consensus       232 ~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          232 AENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             ------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence              00     012457899999999999999885

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.04  E-value=0.00066  Score=64.21  Aligned_cols=65  Identities=18%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCC-----CCCCCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKP-----SVTYPFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-----~~~~~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      -.++||||+|.||+..++.++.. +++|. ++|+++..     ..+...+.+++++++  +.|+|++++|....
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            35899999999999999999876 67875 56876543     124455789999998  78999999986544

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.04  E-value=0.00084  Score=59.63  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=58.7

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------C-CCC--CCCHHHHhhcCCEEEEeccCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T-YPF--YPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~-~~~--~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +|..-++.|+++.|||.|.+|..-++.|...|.+|+++++...+..      + ...  ..--++.+..+|+|+.++ ..
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT-~d  101 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT-ND  101 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC-CC
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC-CC
Confidence            4566789999999999999999999999999999999987654210      1 100  001124567788777654 33


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      ++.    |.......+ -.++||+.
T Consensus       102 ~~~----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          102 QAV----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             THH----HHHHHHHSC-TTCEEEC-
T ss_pred             HHH----HHHHHHHHh-CCCEEEEe
Confidence            332    333333445 55777764

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.04  E-value=0.00043  Score=65.26  Aligned_cols=67  Identities=19%  Similarity=0.092  Sum_probs=50.6

Q ss_pred             CCceEEEEecChHHH-HHHHHHHhC-CCEEE-EECCCCCCCC------CCCCCCCHHHHhh--cCCEEEEeccCCccc
Q 020160          157 GGKRVGIVGLGSIGS-EVAKRLEAF-GCCVS-YNSRNKKPSV------TYPFYPDVCELAA--NSDVLIICCALTDQT  223 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~ell~--~aDvV~l~~P~t~~t  223 (330)
                      .-.++||||+|.||+ .+++.++.. +++|. ++|+++....      +...+.+++++++  +.|+|++++|.....
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~  103 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA  103 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            346899999999998 789988877 77875 6777654311      3344579999997  589999999866443

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.02  E-value=0.00026  Score=65.65  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCC---------CCH-HHHhhcCCEEEEeccCCccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFY---------PDV-CELAANSDVLIICCALTDQT  223 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~---------~~l-~ell~~aDvV~l~~P~t~~t  223 (330)
                      ++|+|||.|.||..+|..|. .|.+|..++|+....     .+....         .+. .+....+|+|+++++.. .+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            68999999999999999999 899999999875321     011000         000 23567899999999854 34


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +..+  +.++.+.++. +|.+.-|=- .++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            4332  2334445566 777766532 233444444444443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.00  E-value=0.00046  Score=63.90  Aligned_cols=89  Identities=13%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------CC------CC-C-CCHHHHhhcCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------TY------PF-Y-PDVCELAANSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------~~------~~-~-~~l~ell~~aDvV~l~~P  218 (330)
                      ..++|+|||.|.||..+|..|...|.  +|..++++.....        +.      .. . .+ .+.++.||+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCC
Confidence            34799999999999999999998898  9999998752210        11      00 1 13 356789999999995


Q ss_pred             CCcc---cc------------ccccHHHHhcCCCCcEEEEcCCCc
Q 020160          219 LTDQ---TH------------HLINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       219 ~t~~---t~------------~li~~~~l~~mk~gailIN~~rg~  248 (330)
                      ....   ++            .+  .+.+....+++++|+++-|-
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~--~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAI--MPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHH--HHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH--HHHHHHhCCCceEEEecCch
Confidence            3321   10            11  11222236788999886654

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.00  E-value=0.00043  Score=64.13  Aligned_cols=101  Identities=13%  Similarity=0.225  Sum_probs=66.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEE-EEECCCCCCCC----CCCCCCCHHHHhh--cCCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCV-SYNSRNKKPSV----TYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V-~~~~~~~~~~~----~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .+|||||+|.||+.+++.++.. ++++ .++++++....    ....+.+++++++  ++|+|++++|......     -
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-----~   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAE-----I   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHH-----H
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHH-----H
Confidence            5899999999999999999876 5775 47787654211    1223568899986  7999999998654322     2


Q ss_pred             HHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 020160          231 VLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       231 ~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i  264 (330)
                      ....++.|. +++.- .--++-+.++|.++.++..+
T Consensus        86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence            223355564 55552 22233445667777665544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.99  E-value=0.00026  Score=68.66  Aligned_cols=84  Identities=20%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC----CCC---HHHH-hhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF----YPD---VCEL-AANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~el-l~~aDvV~l~~P~t~~t~  224 (330)
                      +.+|.|+|+|++|+.+|+.|+..|.+|++.++++...     .+...    ..+   |.++ +.++|+|+++++..+.+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            4679999999999999999999999999999876531     12211    112   3333 678999999998765544


Q ss_pred             ccccHHHHhcCCCCcEEEE
Q 020160          225 HLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN  243 (330)
                      .+  ....+.+.|...+|-
T Consensus        84 ~i--~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIA  100 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEE
T ss_pred             HH--HHHHHHhCCCCeEEE
Confidence            33  456666777755544

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.98  E-value=0.002  Score=60.02  Aligned_cols=101  Identities=12%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             ceEEEEecChHHH-HHHHHHHhCCCEE-EEECCCCCCCC-------CCCCCCCHHHHhh--cCCEEEEeccCCccccccc
Q 020160          159 KRVGIVGLGSIGS-EVAKRLEAFGCCV-SYNSRNKKPSV-------TYPFYPDVCELAA--NSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       159 ~~vgIiG~G~IG~-~~A~~l~~~G~~V-~~~~~~~~~~~-------~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li  227 (330)
                      .++||||+|.+|. .+++.++..|+++ .++|+++....       +...+.+++++++  +.|+|++++|...+.+   
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~---   81 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE---   81 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH---
Confidence            5899999999996 6777777678986 57888776431       2345689999997  6899999998654422   


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 020160          228 NKQVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       228 ~~~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i  264 (330)
                        -....++.|. +++.- .--++-+.++|.++.++..+
T Consensus        82 --~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~  118 (336)
T 2p2s_A           82 --LALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR  118 (336)
T ss_dssp             --HHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence              2233344454 45542 11223334456665554443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.96  E-value=0.00069  Score=62.75  Aligned_cols=99  Identities=20%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEE-EECCCCCCCC--CCCC--CCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVS-YNSRNKKPSV--TYPF--YPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~~~--~~~~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .+|||||+|.||+.+++.++. -++++. ++++++....  +..+  +.++.+. .++|+|++|+|.....+     ...
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~-----~~~   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVER-----TAL   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHH-----HHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhHH-----HHH
Confidence            589999999999999999986 467876 6888765422  2221  3445444 68999999998554332     233


Q ss_pred             hcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCC
Q 020160          233 LALGKKGVIINVGR--G-AIIDEKEMVGCLLRGE  263 (330)
Q Consensus       233 ~~mk~gailIN~~r--g-~~vd~~aL~~aL~~g~  263 (330)
                      ..++.|.-++...-  + ...+...|.++.++..
T Consensus        84 ~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           84 EILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            44556666665432  2 2233355666665544

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.96  E-value=0.012  Score=54.57  Aligned_cols=98  Identities=19%  Similarity=0.144  Sum_probs=73.2

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-------CCCCCCCHHHHhhcCCEEEEeccCC------c
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TYPFYPDVCELAANSDVLIICCALT------D  221 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~l~ell~~aDvV~l~~P~t------~  221 (330)
                      +.|.+|++||= +++.++.+..+..+|++|.+..+..-...       ......++++.++++|+|..-.=..      .
T Consensus       152 l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~  231 (301)
T 2ef0_A          152 LAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAER  231 (301)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------
T ss_pred             cCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccch
Confidence            78999999995 89999999999999999988877543222       1334578999999999998733200      1


Q ss_pred             c------ccccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020160          222 Q------THHLINKQVLLALGKKGVIINVG---RGAIIDEK  253 (330)
Q Consensus       222 ~------t~~li~~~~l~~mk~gailIN~~---rg~~vd~~  253 (330)
                      .      ...-++.+.++.+||+++|.-+.   ||.=|+.+
T Consensus       232 ~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          232 EKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence            1      12457899999999999999987   56555443

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.94  E-value=0.0011  Score=60.97  Aligned_cols=104  Identities=20%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEE-EECCCCC--CCCCCCCCCCHHHHhh--cCCEEEEeccCCccccccccHHH
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVS-YNSRNKK--PSVTYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .++|+|+|+ |++|+.+++.++..|++++ .+++...  ...+...+.+++|+..  ..|++++++|... +...+ .+.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~-~~~~~-~ea   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPA-AADAA-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHH-HHHHH-HHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHH-HHHHH-HHH
Confidence            578999999 9999999999998899854 5555431  1234455778999998  8999999998543 33332 223


Q ss_pred             HhcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRG-AIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg-~~vd~~aL~~aL~~g~i~  265 (330)
                      .+ ..-.. +|..+.| ..-+++.+.++.++..+.
T Consensus        85 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 AH-AGIPL-IVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            32 22222 4444444 223456788888776553

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.91  E-value=0.013  Score=55.04  Aligned_cols=95  Identities=9%  Similarity=0.051  Sum_probs=69.2

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      +.|.||++|| .+++.++++..+..+|++|.+..+..-...              +  +....++++.++++|+|..-.=
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            7899999999 578999999999999999988776432211              1  1234689999999999976432


Q ss_pred             CCc----c-------ccccccHHHHhcCCCCcEEEEcC---CCccc
Q 020160          219 LTD----Q-------THHLINKQVLLALGKKGVIINVG---RGAII  250 (330)
Q Consensus       219 ~t~----~-------t~~li~~~~l~~mk~gailIN~~---rg~~v  250 (330)
                      ...    +       ...-++.+.++.+|++++|.-+.   ||.=|
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EI  302 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEV  302 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTB
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCcee
Confidence            110    0       12457889999999999999886   55433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.90  E-value=0.00088  Score=59.03  Aligned_cols=91  Identities=18%  Similarity=0.052  Sum_probs=62.3

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCC-----C-------CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV-----T-------YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~-----~-------~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ..|++.|.| .|.||+.+++.|...| ++|++.+|++....     .       .....+++++++.+|+|+.++.....
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            458999999 6999999999999999 89999988764321     1       11123466788999999987764332


Q ss_pred             ccccccHHHHhcCCC--CcEEEEcCCCcc
Q 020160          223 THHLINKQVLLALGK--KGVIINVGRGAI  249 (330)
Q Consensus       223 t~~li~~~~l~~mk~--gailIN~~rg~~  249 (330)
                      ..  .....++.|+.  ...||++|....
T Consensus       102 ~~--~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          102 DI--QANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hH--HHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  12344555543  247899987544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.89  E-value=0.0015  Score=60.93  Aligned_cols=102  Identities=17%  Similarity=0.185  Sum_probs=65.8

Q ss_pred             ceEEEEecChHHHHHHHHHH-h-CCCEE-EEECCCCCCC------CCC-CCCCCHHHHhh--cCCEEEEeccCCcccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLE-A-FGCCV-SYNSRNKKPS------VTY-PFYPDVCELAA--NSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~-~-~G~~V-~~~~~~~~~~------~~~-~~~~~l~ell~--~aDvV~l~~P~t~~t~~l  226 (330)
                      .+|||||+|.||+..++.++ . -|+++ .++++++...      .+. ..+.+++++++  ++|+|++++|......  
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--   86 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE--   86 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence            58999999999999999987 5 47775 4678775431      133 23578999987  6999999998654322  


Q ss_pred             ccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcC-Cce
Q 020160          227 INKQVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRG-EIG  265 (330)
Q Consensus       227 i~~~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g-~i~  265 (330)
                         .....++.|. +++.- .-.++-+.++|.++.++. .+.
T Consensus        87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence               2333455564 44431 112223344577777766 553

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.87  E-value=0.019  Score=53.27  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +.|.+|++||=|  ++.++++..+..+|++|.+..+..-...              +  +....++++.++++|+|..-.
T Consensus       146 l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          146 LRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence            689999999985  9999999999999999988876542211              1  223578999999999998843


Q ss_pred             cC-------Ccc-----ccccccHHHHhcCCCCcEEEEcC
Q 020160          218 AL-------TDQ-----THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 P~-------t~~-----t~~li~~~~l~~mk~gailIN~~  245 (330)
                      =.       .++     ...-++.+.++.+||+++|.-+.
T Consensus       226 w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          226 WTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             SSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             eecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            20       011     12456889999999999999885

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.85  E-value=0.00029  Score=63.51  Aligned_cols=78  Identities=21%  Similarity=0.317  Sum_probs=55.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------------C-----------CCCC--C--
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------------S-----------VTYP--F--  199 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------------~-----------~~~~--~--  199 (330)
                      .|.+++|.|||+|.+|..+|+.|...|. +++.+|+..-.                   .           ....  .  
T Consensus        28 ~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           28 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            5889999999999999999999999998 88888876510                   0           0000  0  


Q ss_pred             --C--CCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          200 --Y--PDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       200 --~--~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                        .  .+++++++++|+|+.+++ +.+++.+++....+
T Consensus       108 ~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          108 ALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             SCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             ccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence              1  124567788998888875 45677776655444

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.84  E-value=0.001  Score=62.96  Aligned_cols=64  Identities=14%  Similarity=0.273  Sum_probs=48.5

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPS----VTYPFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      .+|||||+|.||+. .++.++.. +++|. ++++++...    .+...+.+++++++  +.|+|++++|....
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATH   80 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHH
Confidence            58999999999997 67777765 77875 677765421    13344679999998  78999999986544

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.83  E-value=0.017  Score=53.53  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=66.0

Q ss_pred             cCCceEEEEecC---hHHHHHHHHHHhCCCEEEEECCCCCCC--CCCCCCCCHHHHhhcCCEEEEeccCCc---------
Q 020160          156 LGGKRVGIVGLG---SIGSEVAKRLEAFGCCVSYNSRNKKPS--VTYPFYPDVCELAANSDVLIICCALTD---------  221 (330)
Q Consensus       156 l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~~P~t~---------  221 (330)
                      +.|.||++||=|   ++.++++..+..+|++|.+..+..-..  .......++++.++++|+|..-.--.+         
T Consensus       145 l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~  224 (304)
T 3r7f_A          145 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQE  224 (304)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCST
T ss_pred             CCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhHH
Confidence            689999999964   799999999999999998876642111  111234689999999999987421111         


Q ss_pred             c--ccccccHHHHhcCCCCcEEEEcC
Q 020160          222 Q--THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       222 ~--t~~li~~~~l~~mk~gailIN~~  245 (330)
                      +  ...-++.+.++.+|++++|.-+.
T Consensus       225 ~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          225 GYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             THHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHhCCCccCHHHHhhcCCCCEEECCC
Confidence            0  12347888899999999998875

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.83  E-value=0.0042  Score=64.43  Aligned_cols=129  Identities=15%  Similarity=0.163  Sum_probs=85.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------------C-CC----CCCCCHHHHhhcC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------------V-TY----PFYPDVCELAANS  210 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------------~-~~----~~~~~l~ell~~a  210 (330)
                      =++|||||.|.||+.+|..+...|++|+.+|.+++..                      . ..    ....+. +.+++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhC
Confidence            3699999999999999999999999999999875420                      0 00    111233 457899


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEE
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVL  290 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvil  290 (330)
                      |+|+=++|.+-+.+.-+=++.=+.++|+++|-.-.++  +.-..|.++++. .=.-+++=-|.+-|.  -+|.   -||-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~-p~r~ig~HFfnP~~~--m~LV---Evi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFSPAHV--MRLL---EVIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEECCSSTTT--CCEE---EEEE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCC-ccccccccccCCCCC--CceE---EEec
Confidence            9999999988877655545556668999987654433  455566665532 223356655553221  1333   4666


Q ss_pred             cCCCC
Q 020160          291 SPHSA  295 (330)
Q Consensus       291 TPHia  295 (330)
                      +++++
T Consensus       467 g~~Ts  471 (742)
T 3zwc_A          467 SRYSS  471 (742)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            66543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.83  E-value=0.0024  Score=59.62  Aligned_cols=110  Identities=21%  Similarity=0.285  Sum_probs=65.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------CCC------CCCCHHHHhhcCCEEEEeccCCc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------TYP------FYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------~~~------~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      .++|+|||.|.+|..+|..+...|.  +|..+|...+...        ...      ...+-.+.++.||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4699999999999999999998887  8999998764321        100      01122567999999999987533


Q ss_pred             ccccc-------cc-------HHHHhcCCCCcEEEEcCCCcccCHHHHH--HH--HHcCCceEE--EEe
Q 020160          222 QTHHL-------IN-------KQVLLALGKKGVIINVGRGAIIDEKEMV--GC--LLRGEIGGA--GLD  270 (330)
Q Consensus       222 ~t~~l-------i~-------~~~l~~mk~gailIN~~rg~~vd~~aL~--~a--L~~g~i~ga--~lD  270 (330)
                      . .++       .|       .+.+....|++++|++  ...+|.-..+  +.  +...++.|.  .||
T Consensus        87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            1 111       00       1123333689999997  3455543322  22  233466666  256

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.83  E-value=0.0012  Score=61.19  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             ceEEEEecChHHH-HHHHHHHhC-CCEEEEECCCCCCC------CCCCC-CCCHHHHh-hcCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGS-EVAKRLEAF-GCCVSYNSRNKKPS------VTYPF-YPDVCELA-ANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~-~~A~~l~~~-G~~V~~~~~~~~~~------~~~~~-~~~l~ell-~~aDvV~l~~P~t~~t~~li~  228 (330)
                      .++||||+|.||+ .+++.++.. ++++.++++++...      .+... +.+..+++ .++|+|++++|......    
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~----   78 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST----   78 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH----
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH----
Confidence            4899999999998 489988765 67877888876431      12222 33444555 78999999998543322    


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 020160          229 KQVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       229 ~~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       -....++.|. +++.- .--++-+.++|.++.++..+.
T Consensus        79 -~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           79 -LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             -HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence             2223345553 66653 122334455677877776654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.82  E-value=0.0016  Score=61.88  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=46.8

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC----------CCCCCCHHHHhhcCCEEEE
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT----------YPFYPDVCELAANSDVLII  215 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~ell~~aDvV~l  215 (330)
                      .+.|++|+|+|.|.+|+.+++.++.+|++|+++|+.+.....          ......+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            467999999999999999999999999999999876543210          0011236677889998865

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.76  E-value=0.001  Score=58.81  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=42.1

Q ss_pred             ceEEEEecChHHHHHHHH--HHhCCCEEE-EECCCCCCCC----CC--CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKR--LEAFGCCVS-YNSRNKKPSV----TY--PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~~~----~~--~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++++|||+|.+|+.+++.  ....|+++. ++|.++....    +.  ....++++++++.|++++++|..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~  156 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV  156 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence            579999999999999993  446688875 6677665432    11  12457888887779999999854

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.74  E-value=0.0043  Score=57.56  Aligned_cols=91  Identities=24%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CC--CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------TY--PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~~--~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.+|..+|..+...|. +|..+|.+.+...               ..  ....+. +.++.||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999998886 8999998753210               11  111455 6789999999997533


Q ss_pred             cccccc-----c--c----H---HHHhcCCCCcEEEEcCCCcccCHH
Q 020160          221 DQTHHL-----I--N----K---QVLLALGKKGVIINVGRGAIIDEK  253 (330)
Q Consensus       221 ~~t~~l-----i--~----~---~~l~~mk~gailIN~~rg~~vd~~  253 (330)
                      . ..++     +  +    .   +.+....|.+++++++  ..+|.-
T Consensus        82 ~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t--NPv~~~  125 (309)
T 1ur5_A           82 R-KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN--NPLDAM  125 (309)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC--SSHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC--CchHHH
Confidence            2 1111     0  0    1   2233345889999874  344443

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.74  E-value=0.00072  Score=63.36  Aligned_cols=64  Identities=23%  Similarity=0.418  Sum_probs=49.6

Q ss_pred             ceEEEEecChHHHHHHHHHH-h-CCCEEE-EECCCCCCC------CC--CCCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLE-A-FGCCVS-YNSRNKKPS------VT--YPFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~-~-~G~~V~-~~~~~~~~~------~~--~~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      .+|||||+|.||+..++.++ . -++++. ++|+++...      .+  ...+.+++++++.  .|+|++++|....
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   79 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH   79 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence            48999999999999999998 5 467765 678765431      13  3446799999986  9999999986544

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.74  E-value=0.0026  Score=58.00  Aligned_cols=63  Identities=17%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      .++++.|+|.|.+|++++..|...|. +|.+++|+.++..      +.....++.  +.++|+|+.++|..-
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm  187 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM  187 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence            46899999999999999999999998 7999999864311      111111221  467899999988653

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.72  E-value=0.0015  Score=60.67  Aligned_cols=88  Identities=16%  Similarity=0.207  Sum_probs=55.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-----------CCCCCCCHHHHhhcCCEEEEeccCCc--c
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-----------TYPFYPDVCELAANSDVLIICCALTD--Q  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-----------~~~~~~~l~ell~~aDvV~l~~P~t~--~  222 (330)
                      .++|+|||.|.+|..+|..+...|.  +|..+|...+...           ......++ +.++.||+|+++.....  .
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3799999999999999999987777  8999998764110           11112456 66899999999863211  0


Q ss_pred             cc--------cccc--HHHHhcCCCCcEEEEcCC
Q 020160          223 TH--------HLIN--KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~--------~li~--~~~l~~mk~gailIN~~r  246 (330)
                      ++        .++.  .+.+....|.+++++++-
T Consensus        93 tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            10        0110  112233348999999876

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.72  E-value=0.0012  Score=62.40  Aligned_cols=65  Identities=28%  Similarity=0.360  Sum_probs=50.5

Q ss_pred             CceEEEEecChHHHHHHHHHH-h-CCCEEE-EECCCCCCCC------C--CCCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLE-A-FGCCVS-YNSRNKKPSV------T--YPFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~-~-~G~~V~-~~~~~~~~~~------~--~~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      -.++||||+|.||+..++.+. . -|+++. ++|+++....      +  ...+.+++++++  +.|+|++++|....
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            468999999999999999988 4 377875 6888765421      3  345679999997  48999999986644

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.70  E-value=0.023  Score=53.36  Aligned_cols=90  Identities=12%  Similarity=0.058  Sum_probs=64.7

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .+.|.||++|| .+++.++++..+..+|++|.+..+..-...              +  +....+++ .++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            47899999999 578999999999999999988776432211              1  12246788 999999998632


Q ss_pred             --c--CCcc--------c--cccccHHHHhcCCCCcEEEEcC
Q 020160          218 --A--LTDQ--------T--HHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 --P--~t~~--------t--~~li~~~~l~~mk~gailIN~~  245 (330)
                        .  ..++        .  ..-++.+.++.+|++++|.-+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              1  0011        1  1456788888888888888875

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.70  E-value=0.0054  Score=57.57  Aligned_cols=65  Identities=18%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCCCCCCHHHHhhc--CCEEEEeccCCccc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPS----VTYPFYPDVCELAAN--SDVLIICCALTDQT  223 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~ell~~--aDvV~l~~P~t~~t  223 (330)
                      .++||||+|.||+. .++.++.. +++|. ++++++...    .+...+.+++++++.  .|+|++++|...+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   81 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHF   81 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHH
Confidence            58999999999997 77777765 67875 677765321    133456799999976  89999999876543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.70  E-value=0.0012  Score=61.42  Aligned_cols=94  Identities=18%  Similarity=0.349  Sum_probs=60.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------CCCC-------CCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------TYPF-------YPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------~~~~-------~~~l~ell~~aDvV~l~~P~t  220 (330)
                      -++|+|||.|.||..+|..++..|.  +|..+|++.+...        ....       ..+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999986665  8999998753211        0000       123456789999999997754


Q ss_pred             cccccc-----cc------H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          221 DQTHHL-----IN------K---QVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       221 ~~t~~l-----i~------~---~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      .. .++     +.      .   +.+....|.+++++++-  .+|.-+
T Consensus        86 ~~-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~~  130 (316)
T 1ldn_A           86 QK-PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDILT  130 (316)
T ss_dssp             CC-TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHHH
T ss_pred             CC-CCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHHH
Confidence            31 111     10      1   12233358889998744  454433

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.68  E-value=0.0042  Score=61.21  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=70.3

Q ss_pred             ccCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          155 KLGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       155 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .+.|++|+|+|+-          .=...+++.|...|.+|.+||+.........+..++++.++.+|.|+++++.. +.+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~-~f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHS-AYS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCH-HHH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCH-HHH
Confidence            5789999999974          23679999999999999999997653323333468899999999999988643 444


Q ss_pred             ccccH-HHHhcCC-CCcEEEEcCCCcccCHHHH
Q 020160          225 HLINK-QVLLALG-KKGVIINVGRGAIIDEKEM  255 (330)
Q Consensus       225 ~li~~-~~l~~mk-~gailIN~~rg~~vd~~aL  255 (330)
                      . ++. ...+.|+ ++.+++|+ |+- .|.+.+
T Consensus       429 ~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          429 S-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             S-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             h-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            3 343 3445677 47899994 653 565443

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.67  E-value=0.0024  Score=59.71  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             CCceEEEEecChHHH-HHHHHHHhC-CCEEE-EECCCCCCCCCCCCCCCHHHHhhc---CCEEEEeccCCc
Q 020160          157 GGKRVGIVGLGSIGS-EVAKRLEAF-GCCVS-YNSRNKKPSVTYPFYPDVCELAAN---SDVLIICCALTD  221 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~ell~~---aDvV~l~~P~t~  221 (330)
                      +-.++||||+|.||+ ..++.++.. +++|. +++++.+. .+...+.+++++++.   .|+|++++|...
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~   93 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-EGVNSYTTIEAMLDAEPSIDAVSLCMPPQY   93 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-TTSEEESSHHHHHHHCTTCCEEEECSCHHH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-cCCCccCCHHHHHhCCCCCCEEEEeCCcHH
Confidence            346899999999998 788888875 67765 57776543 344557899999876   899999998543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.66  E-value=0.00097  Score=63.05  Aligned_cols=65  Identities=15%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             CceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCCC-------CCCCCCCHHHHhhcC--CEEEEeccCCcc
Q 020160          158 GKRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPSV-------TYPFYPDVCELAANS--DVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~~-------~~~~~~~l~ell~~a--DvV~l~~P~t~~  222 (330)
                      ..+|||||+|.||+. .++.++.. ++++. ++|+++....       ....+.+++++++..  |+|++++|....
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   81 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLH   81 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            368999999999995 88888876 67875 7788754311       223467999999865  999999985433

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.66  E-value=0.0013  Score=59.39  Aligned_cols=79  Identities=23%  Similarity=0.324  Sum_probs=55.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC------C-------C-----------------CC--CC-
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP------S-------V-----------------TY--PF-  199 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~-------~-----------------~~--~~-  199 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...-.      .       .                 ..  .. 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            35889999999999999999999999998 67777654210      0       0                 00  00 


Q ss_pred             ---C--CCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          200 ---Y--PDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       200 ---~--~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                         .  .+++++++++|+|+.++. +.+++.++++...+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~  141 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA  141 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence               0  134567888999988875 56677777765554

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.65  E-value=0.0014  Score=64.02  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             CCceEEEEecChH--HHHHHHHHHh----CCCEEEEECCCCCCCC--------------CCCCCCCHHHHhhcCCEEEEe
Q 020160          157 GGKRVGIVGLGSI--GSEVAKRLEA----FGCCVSYNSRNKKPSV--------------TYPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       157 ~g~~vgIiG~G~I--G~~~A~~l~~----~G~~V~~~~~~~~~~~--------------~~~~~~~l~ell~~aDvV~l~  216 (330)
                      ++++|+|||.|.+  |..+++.+..    .| +|..+|+.+....              ......++++.++.||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4679999999997  6788887764    46 9999998753210              112246888999999999999


Q ss_pred             ccC
Q 020160          217 CAL  219 (330)
Q Consensus       217 ~P~  219 (330)
                      ++.
T Consensus        83 irv   85 (450)
T 3fef_A           83 ILP   85 (450)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            964

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.63  E-value=0.0028  Score=59.14  Aligned_cols=94  Identities=20%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCCCC-CCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV---------------TYPFY-PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~-~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+|||.|.||..+|..+...|+  +|..+|..+....               ..... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999987776  8999998775311               01111 24567899999999987543


Q ss_pred             cc---cc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          221 DQ---TH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       221 ~~---t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      ..   +| .++  |       .+.+....|.+++++++  ..+|.-.
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  125 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLDVMT  125 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--CchhHHH
Confidence            21   11 111  1       12344456889999997  4454443

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.62  E-value=0.0044  Score=53.63  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHH-hCCCEEEEECCCCC-CC-------CC-------CCCCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLE-AFGCCVSYNSRNKK-PS-------VT-------YPFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~-~~G~~V~~~~~~~~-~~-------~~-------~~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      |++.|.| .|.||+.+++.|. ..|++|++.+|++. ..       ..       .....++.++++.+|+|+.++... 
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~-   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES-   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC-
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC-
Confidence            5799999 5999999999999 89999999988765 21       11       111235667889999999887643 


Q ss_pred             cccccccHHHHhcCCC-C-cEEEEcCCCcc
Q 020160          222 QTHHLINKQVLLALGK-K-GVIINVGRGAI  249 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~-g-ailIN~~rg~~  249 (330)
                      ...   ....++.|+. + ..||++|....
T Consensus        85 n~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           85 GSD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             HHH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             Chh---HHHHHHHHHhcCCCeEEEEeecee
Confidence            111   3445555543 2 46888876543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.62  E-value=0.0019  Score=59.64  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=70.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++|+|||.|.+|.++|..+...|.  +|..+|+.++...             ..    ....+ .+.++.||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999987787  8999998764210             00    11234 7889999999998754


Q ss_pred             Ccc---cc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH----cCCceEEE--Ee
Q 020160          220 TDQ---TH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDEKEMVGCLL----RGEIGGAG--LD  270 (330)
Q Consensus       220 t~~---t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~----~g~i~ga~--lD  270 (330)
                      ...   +| .++  |       .+.+....|++++++++  ..+|.-..+-.-.    ..++.|.+  ||
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            321   11 111  1       12344457899999997  5666544332212    34666664  55

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.00076  Score=63.94  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----C-------CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----V-------TYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~-------~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +.++|+|+|.|.+|+.+|+.|.. ..+|.+.+++.+..    .       ......++.++++++|+|++++|..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            45689999999999999999976 57888887764321    0       1111235778899999999999864

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.60  E-value=0.023  Score=52.56  Aligned_cols=91  Identities=15%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhC-CCEEEEECCCCCCC-------CCCC--CCCCHHHHhhcCCEEEEeccCCcc
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAF-GCCVSYNSRNKKPS-------VTYP--FYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-------~~~~--~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      +.|.+|++||=   |++.++++..+..+ |++|.+..+..-..       .+..  ...++++.++++|+|..-.=-.+.
T Consensus       147 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er  226 (299)
T 1pg5_A          147 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER  226 (299)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCccccc
Confidence            68999999997   69999999999999 99998877643211       1222  246899999999999876433211


Q ss_pred             c-----------cccccHHHHhcCCCCcEEEEcCC
Q 020160          223 T-----------HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t-----------~~li~~~~l~~mk~gailIN~~r  246 (330)
                      .           ..-++.+.++.+||+++|.-+.-
T Consensus       227 ~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          227 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             ccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence            0           24568888899999998888753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.60  E-value=0.003  Score=59.21  Aligned_cols=90  Identities=14%  Similarity=0.187  Sum_probs=60.0

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CCC--CCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------TYP--FYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~~~--~~~~l~ell~~aDvV~l~~  217 (330)
                      ...++|+|||.|.+|..+|..+...|+ +|..+|+.+....               ...  ...+. +.++.||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            356799999999999999999988888 9999998765310               111  12344 7899999999987


Q ss_pred             cCCc--c-cc-ccc--cH-------HHHhcCCCCcEEEEcCC
Q 020160          218 ALTD--Q-TH-HLI--NK-------QVLLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~t~--~-t~-~li--~~-------~~l~~mk~gailIN~~r  246 (330)
                      +...  . +| .++  |.       +.+....|++++++++-
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            5321  1 11 111  11       12333458899999874

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.59  E-value=0.005  Score=52.11  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY-------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++++.|.|. |.||+.+++.|...|++|++.+|++....     ..       ....++.++++.+|+|+.++...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            479999997 99999999999999999999888754321     11       11124567788999999887644

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.58  E-value=0.013  Score=54.98  Aligned_cols=92  Identities=11%  Similarity=0.032  Sum_probs=69.0

Q ss_pred             ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|.+|++||=|  +++++++..+..+|++|.+..+..-...              +  .....++++.++++|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            4789999999986  9999999999999999988876432111              1  22357899999999999873


Q ss_pred             ccC--------Ccc-----ccccccHHHHhcC-CCCcEEEEcCC
Q 020160          217 CAL--------TDQ-----THHLINKQVLLAL-GKKGVIINVGR  246 (330)
Q Consensus       217 ~P~--------t~~-----t~~li~~~~l~~m-k~gailIN~~r  246 (330)
                      .=.        ..+     ...-++.+.++.+ ||+++|.-+.-
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            320        000     1246789999999 99999998853

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.58  E-value=0.0016  Score=61.06  Aligned_cols=64  Identities=17%  Similarity=0.300  Sum_probs=46.1

Q ss_pred             ceEEEEecChHHHH-HHH-HHH-hCCCEEE-EECCCCCCCC------CCCCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSE-VAK-RLE-AFGCCVS-YNSRNKKPSV------TYPFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~-~l~-~~G~~V~-~~~~~~~~~~------~~~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+. .+. .+. .-+++|. ++|+++....      +...+.+++++++.  .|+|++++|...+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH
Confidence            48999999999996 455 323 3477876 7888765321      23346789999986  8999999986644

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.57  E-value=0.028  Score=53.16  Aligned_cols=90  Identities=12%  Similarity=0.060  Sum_probs=65.4

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .+.|.+|++|| .+++.++++..+..||++|.+..+..-...              +  +....+++ .++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            47899999999 589999999999999999988776432211              1  12246788 999999998622


Q ss_pred             ----cCCc----c----c--cccccHHHHhcCCCCcEEEEcC
Q 020160          218 ----ALTD----Q----T--HHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 ----P~t~----~----t--~~li~~~~l~~mk~gailIN~~  245 (330)
                          ...+    +    .  ..-++.+.++.+|++++|.-+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                1001    1    1  1456888888899999998885

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.56  E-value=0.0048  Score=60.29  Aligned_cols=98  Identities=21%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             ccccCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEec
Q 020160          153 GSKLGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +..+.|++|+|+|+.          .-...+++.|...|.+|.+||+.....     .+.....++++.++.+|.|++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            446899999999997          677899999999999999999976321     13344568899999999999988


Q ss_pred             cCCccccccccHH-HHhcCCCCcEEEEcCCCcccCHHHH
Q 020160          218 ALTDQTHHLINKQ-VLLALGKKGVIINVGRGAIIDEKEM  255 (330)
Q Consensus       218 P~t~~t~~li~~~-~l~~mk~gailIN~~rg~~vd~~aL  255 (330)
                      ... +.+. ++.+ ..+.|+ +.+++|+ |+ +.|.+.+
T Consensus       397 ~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          397 EWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             CCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            654 3333 3444 444566 4678884 64 4565544

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.55  E-value=0.0033  Score=54.44  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=58.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCC-----------CCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT-----------YPFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-----------~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      ++|.|.| .|.||+.+++.|...|++|++.+|++.....           .....++.++++++|+|+.+.........+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~   84 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDI   84 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC------C
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCChhH
Confidence            6899999 5999999999999999999999998654221           111234667889999998877544222111


Q ss_pred             cc------HHHHhcCCC-C-cEEEEcCCCcc
Q 020160          227 IN------KQVLLALGK-K-GVIINVGRGAI  249 (330)
Q Consensus       227 i~------~~~l~~mk~-g-ailIN~~rg~~  249 (330)
                      +.      ...++.+++ + ..+|.+|....
T Consensus        85 ~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~  115 (227)
T 3dhn_A           85 YDETIKVYLTIIDGVKKAGVNRFLMVGGAGS  115 (227)
T ss_dssp             CSHHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeCChhh
Confidence            11      223333332 2 37888887553

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.55  E-value=0.00072  Score=59.71  Aligned_cols=84  Identities=10%  Similarity=0.022  Sum_probs=56.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCC----CCCC---HHHH-hhcCCEEEEeccCCccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYP----FYPD---VCEL-AANSDVLIICCALTDQTHH  225 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~----~~~~---l~el-l~~aDvV~l~~P~t~~t~~  225 (330)
                      .+++.|+|+|.+|+.+|+.|...|+ |++.++++...    .+..    ...+   +.+. +.++|.|++++|..+.+. 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~-   86 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI-   86 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH-
Confidence            5689999999999999999999999 99999876421    1111    1122   3333 678999999988654333 


Q ss_pred             cccHHHHhcCCCC-cEEEEc
Q 020160          226 LINKQVLLALGKK-GVIINV  244 (330)
Q Consensus       226 li~~~~l~~mk~g-ailIN~  244 (330)
                       .-....+.+.++ .+++.+
T Consensus        87 -~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           87 -HCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             -HHHHHHHHHCSSSEEEEEC
T ss_pred             -HHHHHHHHHCCCCeEEEEE
Confidence             334556667776 444444

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.55  E-value=0.0021  Score=60.36  Aligned_cols=96  Identities=20%  Similarity=0.279  Sum_probs=61.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------------TYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .+++|+|||.|.||..+|..+...|.  ++..+|.......              ......+..+.++.||+|+++....
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~   87 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence            56899999999999999999987777  8999998643210              1111223457799999999986432


Q ss_pred             c---ccc-cccc---------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          221 D---QTH-HLIN---------KQVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       221 ~---~t~-~li~---------~~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      .   .+| .++.         .+.+....|.+++++++  ..+|.-+
T Consensus        88 ~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi~t  132 (326)
T 3vku_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDILT  132 (326)
T ss_dssp             ----------------CHHHHHHHHHTTTCCSEEEECS--SSHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHHHH
Confidence            1   122 1221         12344456889999996  4555433

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.53  E-value=0.0041  Score=57.75  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=72.3

Q ss_pred             ccCCceEEEE-ec-ChHHHHHHHHHHhCCCEEE-EECCCCC--CCCCCCCCCCHHHHhh--cCCEEEEeccCCccccccc
Q 020160          155 KLGGKRVGIV-GL-GSIGSEVAKRLEAFGCCVS-YNSRNKK--PSVTYPFYPDVCELAA--NSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       155 ~l~g~~vgIi-G~-G~IG~~~A~~l~~~G~~V~-~~~~~~~--~~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li  227 (330)
                      -+..+++.|| |+ |+.|+.+++.++..|++++ ..++...  ...+...+.+++|+.+  ..|++++++|.... ...+
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~-~~~~   88 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFA-AAAI   88 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHH-HHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHHHH-HHHH
Confidence            3567889999 99 9999999999999999954 4555431  2235555678999998  89999999986433 3232


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-Cce
Q 020160          228 NKQVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRG-EIG  265 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g-~i~  265 (330)
                      . +..+ ..- ..+|+.+-|-- -++..+.+..++. .+.
T Consensus        89 ~-e~i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           89 N-EAID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             H-HHHH-TTC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             H-HHHH-CCC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            2 2322 222 24456666642 3344788888877 554

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.53  E-value=0.0052  Score=57.41  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=62.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CCCCC-CCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------TYPFY-PDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~~~~~-~~l~ell~~aDvV~l~~P~  219 (330)
                      ..++|+|||.|.+|..+|..+...|+ +|..+|..+....               ..... .+-.+.++.||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            45799999999999999999987777 9999998765310               11111 1224789999999998643


Q ss_pred             C--cc-ccc-cc--c-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          220 T--DQ-THH-LI--N-------KQVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       220 t--~~-t~~-li--~-------~~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      .  +. +|. ++  |       .+.+....|++++++++  ..+|.-.
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  129 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV  129 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence            2  11 110 11  1       11233345889999995  5555444

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.50  E-value=0.013  Score=54.87  Aligned_cols=92  Identities=8%  Similarity=0.031  Sum_probs=68.8

Q ss_pred             ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|.+|++||=|  +++++++..+..+|++|.+..+..-...              +  .....++++.++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            4789999999985  9999999999999999988876432111              1  22357899999999999874


Q ss_pred             ccC--C------cc-----ccccccHHHHhcC-CCCcEEEEcCC
Q 020160          217 CAL--T------DQ-----THHLINKQVLLAL-GKKGVIINVGR  246 (330)
Q Consensus       217 ~P~--t------~~-----t~~li~~~~l~~m-k~gailIN~~r  246 (330)
                      .=.  .      .+     ...-++.+.++.+ ||+++|.-+.-
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP  275 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence            320  0      00     1246789999999 99999998853

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.50  E-value=0.0014  Score=61.22  Aligned_cols=64  Identities=25%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC---CEE-EEECCCCCCCC------CC-CCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG---CCV-SYNSRNKKPSV------TY-PFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G---~~V-~~~~~~~~~~~------~~-~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+..++.++..+   +++ .++++++....      +. ..+.+++++++  +.|+|++++|...+
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   79 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            48999999999999999998654   455 46787654311      33 34679999997  69999999986644

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.46  E-value=0.0025  Score=59.76  Aligned_cols=96  Identities=22%  Similarity=0.290  Sum_probs=61.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------C-------CCCCCCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------T-------YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------~-------~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ..++|+|||.|.||..+|..+...|.  +|..+|+..+...        .       .....+..+.+++||+|+++...
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35799999999999999999988777  8999998653210        1       01112234678999999998753


Q ss_pred             Ccc---cc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          220 TDQ---TH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       220 t~~---t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      ...   +| .++  |       .+.+....|++++++++  ..+|.-+
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd~~t  129 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVDILT  129 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHHHHH
Confidence            211   11 111  1       12233456889999997  3455433

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.46  E-value=0.035  Score=51.84  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +.|.+|++||=|  ++.++++..+..+|++|.+..+..-...              +  +....++++.++++|+|..-.
T Consensus       165 l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~  244 (325)
T 1vlv_A          165 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV  244 (325)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEecc
Confidence            789999999985  9999999999999999988876432111              1  223578999999999998733


Q ss_pred             cC-------Ccc-----ccccccHHHHhcC-CCCcEEEEcC
Q 020160          218 AL-------TDQ-----THHLINKQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       218 P~-------t~~-----t~~li~~~~l~~m-k~gailIN~~  245 (330)
                      =.       .++     ...-++.+.++.+ ||+++|.-+.
T Consensus       245 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          245 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            21       011     1355788999999 9999999885

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.0011  Score=65.20  Aligned_cols=88  Identities=20%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhC-CCEEEEECCCCCCC------CCCC----CC---CCHHHHhhcCCEEEEecc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAF-GCCVSYNSRNKKPS------VTYP----FY---PDVCELAANSDVLIICCA  218 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~------~~~~----~~---~~l~ell~~aDvV~l~~P  218 (330)
                      +..+.+++|.|+|.|.+|+.+++.|... |.+|.+++|+....      .+..    ..   .++.++++.+|+|++++|
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp   97 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP   97 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence            4568899999999999999999999987 78999999875321      0111    01   245677889999999998


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcC
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      ..... . +..   ..++.|..+++++
T Consensus        98 ~~~~~-~-v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           98 YTFHP-N-VVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             GGGHH-H-HHH---HHHHHTCEEEECS
T ss_pred             hhhhH-H-HHH---HHHhcCCEEEEee
Confidence            65221 1 111   2234566666654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.44  E-value=0.0073  Score=56.61  Aligned_cols=106  Identities=19%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             ceEEEEecChHHHHHHHHHHh---------CCCEEE-EECCCCCCCC-------------CCCCCC--CHHHHhhc--CC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA---------FGCCVS-YNSRNKKPSV-------------TYPFYP--DVCELAAN--SD  211 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~---------~G~~V~-~~~~~~~~~~-------------~~~~~~--~l~ell~~--aD  211 (330)
                      .+|||||+|.||+.+++.+..         .+.+|. +++++.....             ....+.  ++++++..  .|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            489999999999999999875         467775 4565532210             012233  89998864  89


Q ss_pred             EEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 020160          212 VLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGEIG  265 (330)
Q Consensus       212 vV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~i~  265 (330)
                      +|+.++|....+.. .-.-....++.|.-+|-..-+.+. +-+.|.++.++....
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999986543211 113346667888877766444443 456777777766653

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.44  E-value=0.0021  Score=60.71  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCCC----CCCCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPSV----TYPFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~~----~~~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+. .+..++.. +++|. ++|+++....    +...+.+++++++.  .|+|++++|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            58999999999997 67777765 67875 6787765321    23346789999987  8999999986544

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.40  E-value=0.0033  Score=59.24  Aligned_cols=102  Identities=13%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEE-EEECCCCCCC------CC----CCCCCCHHHHhh--cCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCV-SYNSRNKKPS------VT----YPFYPDVCELAA--NSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V-~~~~~~~~~~------~~----~~~~~~l~ell~--~aDvV~l~~P~t~~t~  224 (330)
                      .++||||+|.||+.+++.++.. ++++ .++++++...      .+    ...+.+++++++  +.|+|++++|......
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            5899999999999999998875 5676 4678765421      12    233578999987  5999999998553322


Q ss_pred             ccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 020160          225 HLINKQVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       225 ~li~~~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i~  265 (330)
                           -....++.|. +++.- ---++-+.++|.++.++..+.
T Consensus        87 -----~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           87 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             -----HHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                 2334456665 44432 112333456678877776654

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.40  E-value=0.0048  Score=57.20  Aligned_cols=64  Identities=17%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEE-EECCCCCCCC------CCCCCCCHHHHh----------hcCCEEEEeccCC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVS-YNSRNKKPSV------TYPFYPDVCELA----------ANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~~~~------~~~~~~~l~ell----------~~aDvV~l~~P~t  220 (330)
                      .++||||+ |.||+..++.++..+.++. ++|+++....      ....+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 6899999999998898864 6777765421      223457888887          5689999999865


Q ss_pred             cc
Q 020160          221 DQ  222 (330)
Q Consensus       221 ~~  222 (330)
                      ..
T Consensus        84 ~H   85 (312)
T 3o9z_A           84 LH   85 (312)
T ss_dssp             GH
T ss_pred             hh
Confidence            43

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.39  E-value=0.0032  Score=59.55  Aligned_cols=86  Identities=28%  Similarity=0.316  Sum_probs=61.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------CCCCCC---CCC---HHHHhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------SVTYPF---YPD---VCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~---~~~---l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .|++|.|+|.|.||..+++.++.+|++|++.++++..      ..+...   +.+   +.++....|+|+.++...... 
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~-  265 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL-  265 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHH-
Confidence            5899999999999999999999999999988876543      122211   122   223334678888877643221 


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg  247 (330)
                          ...++.|++++.+|+++..
T Consensus       266 ----~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          266 ----LPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ----HHHHHHEEEEEEEEECCCC
T ss_pred             ----HHHHHHHhcCCEEEEEccC
Confidence                4567788888889988753

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.38  E-value=0.0036  Score=61.74  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             CceEEEEecChH--HHHHHHHHH---hC-CCEEEEECCCCCCC---------------CC--CCCCCCHHHHhhcCCEEE
Q 020160          158 GKRVGIVGLGSI--GSEVAKRLE---AF-GCCVSYNSRNKKPS---------------VT--YPFYPDVCELAANSDVLI  214 (330)
Q Consensus       158 g~~vgIiG~G~I--G~~~A~~l~---~~-G~~V~~~~~~~~~~---------------~~--~~~~~~l~ell~~aDvV~  214 (330)
                      .++|+|||.|.+  |.++|..+.   ++ |.+|..+|+..+..               ..  .....++.+.++.||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            469999999997  566666664   33 88999999876420               01  112357778899999999


Q ss_pred             EeccCC---------------------cccc-------ccc----c-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020160          215 ICCALT---------------------DQTH-------HLI----N-------KQVLLALGKKGVIINVGRGAIIDEKEM  255 (330)
Q Consensus       215 l~~P~t---------------------~~t~-------~li----~-------~~~l~~mk~gailIN~~rg~~vd~~aL  255 (330)
                      +++|..                     .+|.       +++    +       .+.+....|++++||++-.-=+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            999641                     1110       111    0       123444568999999977554444455


Q ss_pred             HHHHHcCCceEEE
Q 020160          256 VGCLLRGEIGGAG  268 (330)
Q Consensus       256 ~~aL~~g~i~ga~  268 (330)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            44 5555666653

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.33  E-value=0.02  Score=53.49  Aligned_cols=90  Identities=13%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      +.|.||++|| .+++.++.+..+..+|++|.+..+..-...              +  +....++++.++++|+|..-.=
T Consensus       155 l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~w  234 (323)
T 3gd5_A          155 LAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVW  234 (323)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEece
Confidence            6899999999 578999999999999999988776432211              1  2235689999999999976431


Q ss_pred             CCc-------c-----ccccccHHHHhcCCCCcEEEEcC
Q 020160          219 LTD-------Q-----THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       219 ~t~-------~-----t~~li~~~~l~~mk~gailIN~~  245 (330)
                      -..       +     ...-++.+.++.+|++++|.-+.
T Consensus       235 qs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          235 TSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             C---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             ecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            110       0     12357888999999999998874

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.31  E-value=0.0055  Score=56.92  Aligned_cols=64  Identities=17%  Similarity=0.317  Sum_probs=49.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEE-EECCCCCCCC------CCCCCCCHHHHh-----------hcCCEEEEeccC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVS-YNSRNKKPSV------TYPFYPDVCELA-----------ANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~~~~------~~~~~~~l~ell-----------~~aDvV~l~~P~  219 (330)
                      .++||||+ |.||+..++.++..|.++. ++|+++....      +...+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 7899999999998898864 6777665321      223456888887           568999999986


Q ss_pred             Ccc
Q 020160          220 TDQ  222 (330)
Q Consensus       220 t~~  222 (330)
                      ..+
T Consensus        84 ~~H   86 (318)
T 3oa2_A           84 YLH   86 (318)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            544

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.29  E-value=0.028  Score=53.31  Aligned_cols=91  Identities=14%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCC--C--------------C--CCCCCCHHHHhhcCCEEEE
Q 020160          156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPS--V--------------T--YPFYPDVCELAANSDVLII  215 (330)
Q Consensus       156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~--~--------------~--~~~~~~l~ell~~aDvV~l  215 (330)
                      +.|.+|++||=|  ++..+++..+..+|++|.+..+..-..  .              +  +....++++.++++|+|..
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            789999999987  889999999999999998887642111  0              1  2234689999999999986


Q ss_pred             ec--cCCcc-----------ccccccHHHHhcCCCCcEEEEcCC
Q 020160          216 CC--ALTDQ-----------THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       216 ~~--P~t~~-----------t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      -+  .-.++           ...-++.+.++.+||+++|.-+.-
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP  301 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP  301 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence            32  11111           124578899999999999998853

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.28  E-value=0.0017  Score=61.20  Aligned_cols=65  Identities=17%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCC----CCCCCCCCHHHHhh--cCCEEEEeccCCccc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPS----VTYPFYPDVCELAA--NSDVLIICCALTDQT  223 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~----~~~~~~~~l~ell~--~aDvV~l~~P~t~~t  223 (330)
                      .++||||+|.||+. .+..++.. +++|. ++++++...    .+...+.+++++++  +.|+|++++|.....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~   79 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHY   79 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHH
Confidence            58999999999997 67777765 67875 677765321    13344679999998  689999999976543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.27  E-value=0.019  Score=55.85  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             cCCceEEEEecC----------hHHHHHHHHHHhC-CCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          156 LGGKRVGIVGLG----------SIGSEVAKRLEAF-GCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       156 l~g~~vgIiG~G----------~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      +.|++|+|+|+.          .-...+++.|... |.+|.+||+.....   ....++++.++.+|.|++++... +.+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~---~~~~~~~~~~~~ad~vvi~t~~~-~f~  388 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD---FVEHDMSHAVKDASLVLILSDHS-EFK  388 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT---TBCSTTHHHHTTCSEEEECSCCG-GGT
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc---cccCCHHHHHhCCCEEEEecCCH-HHh
Confidence            689999999974          3468999999999 99999999976543   23567889999999999988644 444


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                      . ++.+.++.|+ +.+++|+ |+-+
T Consensus       389 ~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          389 N-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             S-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             c-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            3 3444456776 6788885 5544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.26  E-value=0.006  Score=54.93  Aligned_cols=62  Identities=26%  Similarity=0.378  Sum_probs=47.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-C-------CCCCCCHHHHhhc-CCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-T-------YPFYPDVCELAAN-SDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~-------~~~~~~l~ell~~-aDvV~l~~P  218 (330)
                      .+++|.|.|.|.||+.+++.|...|++|++.+|+..... +       .....++.++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            367999999999999999999999999999988765421 1       1112345566776 999987764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.25  E-value=0.012  Score=54.83  Aligned_cols=96  Identities=20%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC--CCCC---------------CCCCC-CCHHHHhhcCCEEEEec
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK--KPSV---------------TYPFY-PDVCELAANSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~--~~~~---------------~~~~~-~~l~ell~~aDvV~l~~  217 (330)
                      ..++|+|||.|.||..+|..+...|+ +|..+|+.+  ....               ..... .+-.+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46899999999999999999998899 999999973  1100               00111 12246789999999987


Q ss_pred             cCC--cc-cc-ccc--c----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          218 ALT--DQ-TH-HLI--N----K---QVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       218 P~t--~~-t~-~li--~----~---~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      ...  +. +| .++  |    +   +.+....|++++++++  ..+|.-.
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t  134 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMT  134 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHH
Confidence            432  21 11 112  1    1   1233346889999997  4444444

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.25  E-value=0.0015  Score=61.43  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=59.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC----------C------CCCCCCHHHHhhcCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV----------T------YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~----------~------~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ..++|+|||.|.||..+|..+...|+  +|..+|...+...          .      .....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999988787  8999998653210          0      011234544 899999999864


Q ss_pred             CCc---ccc-cccc---------HHHHhcCCCCcEEEEcCC
Q 020160          219 LTD---QTH-HLIN---------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t~---~t~-~li~---------~~~l~~mk~gailIN~~r  246 (330)
                      ...   .+| .++.         .+.+....|++++++++-
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            321   111 1221         123344578999999873

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.25  E-value=0.0048  Score=53.32  Aligned_cols=92  Identities=14%  Similarity=0.166  Sum_probs=59.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCC-CCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPF-YPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~-~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      ++|.|.| .|.||+.+++.|...|++|++.+|++....          .... ..++.++++++|+|+.++........-
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~   80 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLK   80 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSCCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCcEe
Confidence            4789999 899999999999999999999998765322          1111 224556788999999887655321000


Q ss_pred             cc----HHHHhcCCC-C-cEEEEcCCCccc
Q 020160          227 IN----KQVLLALGK-K-GVIINVGRGAII  250 (330)
Q Consensus       227 i~----~~~l~~mk~-g-ailIN~~rg~~v  250 (330)
                      ++    ...++.++. + ..||++|.....
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~  110 (219)
T 3dqp_A           81 VDLYGAVKLMQAAEKAEVKRFILLSTIFSL  110 (219)
T ss_dssp             CCCHHHHHHHHHHHHTTCCEEEEECCTTTT
T ss_pred             EeHHHHHHHHHHHHHhCCCEEEEECccccc
Confidence            01    123333332 2 478888764433

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.24  E-value=0.0047  Score=57.93  Aligned_cols=64  Identities=16%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             ceEEEEecChHHH-HHHHHHHhC-CCEEE-EECCCCCCC-------CCCCCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGS-EVAKRLEAF-GCCVS-YNSRNKKPS-------VTYPFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~~-------~~~~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+ ..+..++.. +++|. +++++....       .+...+.+++++++.  .|+|++++|...+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH   78 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence            4899999999998 567767665 67875 677762111       123446799999986  8999999986544

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.19  E-value=0.0044  Score=57.70  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV---------------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~---------------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ..++|+|||.|.+|..+|..+...|.  +|..+|.......               ......+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            35799999999999999999887674  8999987642110               001111345679999999999865


Q ss_pred             Ccccccc-----c--c-------HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEE
Q 020160          220 TDQTHHL-----I--N-------KQVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGA  267 (330)
Q Consensus       220 t~~t~~l-----i--~-------~~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga  267 (330)
                      ... .+.     +  +       .+.+....|++++|+++  ..+|.-+  +.+.  +...++.|.
T Consensus        85 ~~~-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           85 AQK-PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCC-TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCC-CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            432 111     0  1       12233347899999975  4454433  2232  223356665

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.17  E-value=0.018  Score=54.64  Aligned_cols=83  Identities=16%  Similarity=0.265  Sum_probs=54.1

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCCC-------CC-------CCCCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSVT-------YP-------FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~-------~~-------~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ...+|||+| +|.||+.+++.|.... +++.+..........       +.       ...+ ++.+..+|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999998765 477665443222110       00       0112 44567899999999865


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..      .+.....+.|+.+|+.|.
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSS
T ss_pred             hH------HHHHHHHhCCCEEEECCc
Confidence            33      222222367899999875

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.15  E-value=0.023  Score=54.37  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc---
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA---  234 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~---  234 (330)
                      -.++-|+|.|.+|+++++.++.+|++|+++|.++.-...        +-+..+|-++...|          .+.+..   
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~~--------~~fp~a~~~~~~~p----------~~~~~~~~~  265 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATT--------ARFPTADEVVVDWP----------HRYLAAQAE  265 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSCT--------TTCSSSSEEEESCH----------HHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhccc--------ccCCCceEEEeCCh----------HHHHHhhcc
Confidence            458999999999999999999999999999887642211        12245554444333          112222   


Q ss_pred             ---CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 020160          235 ---LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAG  268 (330)
Q Consensus       235 ---mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~  268 (330)
                         +.+++++|=+.++.-.|...|..+|+.+.....+
T Consensus       266 ~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          266 AGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             HTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             ccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence               6778888888999999999999999887343333

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.14  E-value=0.0052  Score=53.73  Aligned_cols=68  Identities=19%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-C-----CCCCHHHHhhcCCEEEEeccCC
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY-P-----FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~-~-----~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      -..+.||++.|.|. |.||+.+++.|...|++|++.+|++....     +. .     ...++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            34689999999997 99999999999999999999988764310     11 1     1156678889999999887654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.13  E-value=0.014  Score=53.29  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHHh-CCCEEEE-ECCCCCCC------------CCCCCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEA-FGCCVSY-NSRNKKPS------------VTYPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~-~~~~~~~~------------~~~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+|+|+| +|+||+.+++.+.. -++++.+ ++++....            .+.....++++++.++|+|+-+.+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            6899999 99999999998875 4778765 67764321            123345789999999999998775

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.13  E-value=0.048  Score=50.83  Aligned_cols=91  Identities=13%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      +.|.+|++||= .++.++.+..+..+|++|.+..+..-...              +  +....++++.++++|+|..-+-
T Consensus       153 l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w  232 (321)
T 1oth_A          153 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW  232 (321)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             cCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEecc
Confidence            78999999996 45888888888999999988877543211              1  2235689999999999988331


Q ss_pred             C--C--cc--------ccccccHHHHhcCCCCcEEEEcCC
Q 020160          219 L--T--DQ--------THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~--t--~~--------t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      .  .  .+        ...-++.+.++.+||+++|.-+.-
T Consensus       233 ~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          233 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             ccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence            1  1  11        114568889999999999998853

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.13  E-value=0.0037  Score=60.68  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             CceEEEEecChHHH-HHHHHHHhC-CCEE-EEECCCCCCC------CCCC-----CCCCHHHHhh--cCCEEEEeccCCc
Q 020160          158 GKRVGIVGLGSIGS-EVAKRLEAF-GCCV-SYNSRNKKPS------VTYP-----FYPDVCELAA--NSDVLIICCALTD  221 (330)
Q Consensus       158 g~~vgIiG~G~IG~-~~A~~l~~~-G~~V-~~~~~~~~~~------~~~~-----~~~~l~ell~--~aDvV~l~~P~t~  221 (330)
                      -.+|||||+|.||+ .+++.++.. ++++ .++|+++...      .+..     .+.+++++++  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899988765 5676 4778765421      1222     4678999987  7999999998654


Q ss_pred             cccccccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 020160          222 QTHHLINKQVLLALGKKG-VIINV-GRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~ga-ilIN~-~rg~~vd~~aL~~aL~~g~i  264 (330)
                      ....     ....++.|. +++.- ---++-+.++|.++.++..+
T Consensus       163 h~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  202 (433)
T 1h6d_A          163 HAEF-----AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  202 (433)
T ss_dssp             HHHH-----HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             HHHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence            4332     223344554 45542 11223334456666554443

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.12  E-value=0.0084  Score=55.29  Aligned_cols=103  Identities=16%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEE-EECCCCC-C-CCCCCCCCCHHHHhh--cCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVS-YNSRNKK-P-SVTYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~-~-~~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .++.|+|. |++|+.+++.+...|++++ .+++... . ..+...+.+++++..  ..|++++++|...... .+ .+.+
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~-~v-~ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKD-AV-FEAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHH-HH-HHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHH-HH-HHHH
Confidence            45788898 9999999999999999833 4454321 1 124455789999998  8999999998643332 22 2333


Q ss_pred             hcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCce
Q 020160          233 LALGKKGVIINVGRG-AIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       233 ~~mk~gailIN~~rg-~~vd~~aL~~aL~~g~i~  265 (330)
                      + ..... +|..+.| ..-+++.|.++.++..+.
T Consensus        92 ~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            3 23232 3334433 223466888888776553

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.11  E-value=0.033  Score=51.68  Aligned_cols=99  Identities=14%  Similarity=0.163  Sum_probs=71.5

Q ss_pred             ccC-CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLG-GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~-g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+. |.+|++|| .+++.++.+..+..+|++|.+..+..-...              +  +....++++.++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            367 99999999 578999999999999999988776432111              1  12346899999999999775


Q ss_pred             c---cCCc-c--------ccccccHHHHhcCCCCcEEEEcC---CCcccCHH
Q 020160          217 C---ALTD-Q--------THHLINKQVLLALGKKGVIINVG---RGAIIDEK  253 (330)
Q Consensus       217 ~---P~t~-~--------t~~li~~~~l~~mk~gailIN~~---rg~~vd~~  253 (330)
                      .   -..+ +        ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            4   1100 0        12457889999999999999886   56555443

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.10  E-value=0.03  Score=52.12  Aligned_cols=90  Identities=12%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      +.|.+|++||= +++.++++..+..+|++|.+..+..-...              +  .....++++.++++|+|..-.=
T Consensus       153 l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w  232 (315)
T 1pvv_A          153 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW  232 (315)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcce
Confidence            78999999995 89999999999999999988876432211              1  2235789999999999987432


Q ss_pred             C-------Ccc-----ccccccHHHHhcCCCCcEEEEcC
Q 020160          219 L-------TDQ-----THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       219 ~-------t~~-----t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .       .++     ...-++.+.++.+||+++|.-+.
T Consensus       233 ~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          233 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            1       111     12457889999999999999885

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.08  E-value=0.011  Score=50.72  Aligned_cols=89  Identities=17%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCC-----CC-CCHHHHhhcCCEEEEeccCCccccc--
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYP-----FY-PDVCELAANSDVLIICCALTDQTHH--  225 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~-----~~-~~l~ell~~aDvV~l~~P~t~~t~~--  225 (330)
                      ++|.|.| .|.||+.+++.|...|++|.+.+|++...    .+..     .. .+. +.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL-SDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH-HHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhh-hhhcCCCEEEECCcCCccccchH
Confidence            4799999 59999999999999999999999875421    1111     00 112 678899999988865433211  


Q ss_pred             -cccHHHHhcCCC--CcEEEEcCCCc
Q 020160          226 -LINKQVLLALGK--KGVIINVGRGA  248 (330)
Q Consensus       226 -li~~~~l~~mk~--gailIN~~rg~  248 (330)
                       ......++.|+.  ...+|++|...
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecce
Confidence             011345556654  35788877643

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.08  E-value=0.0057  Score=57.06  Aligned_cols=107  Identities=16%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCCCCCCHHHHhhcCCEEEEeccCCc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------------TYPFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      .++|+|||.|.+|.+++..+...+.  ++..+|...+...              ......+..+.++.||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3699999999999999999987666  8999998643211              00111234567999999999986432


Q ss_pred             ccccc-----c--c-------HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEE
Q 020160          222 QTHHL-----I--N-------KQVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGA  267 (330)
Q Consensus       222 ~t~~l-----i--~-------~~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga  267 (330)
                      . .++     +  |       .+.+....|.++++++  ...+|.-+  +.+.  +...++.|.
T Consensus        85 ~-~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           85 K-PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             C-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEec
Confidence            2 111     0  1       1223334789999998  44454433  2222  233356555

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.07  E-value=0.0028  Score=55.70  Aligned_cols=62  Identities=11%  Similarity=0.119  Sum_probs=44.4

Q ss_pred             CceEEEEecChHHHHHHHH--HHhCCCEEE-EECCCCCCCC----CCC--CCCCHHHHhh-cCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKR--LEAFGCCVS-YNSRNKKPSV----TYP--FYPDVCELAA-NSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~~~----~~~--~~~~l~ell~-~aDvV~l~~P~t  220 (330)
                      .++++|||+|.+|+.+++.  ... |+++. ++|.++....    +..  ...+++++++ +.|.|++++|..
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            3689999999999999985  334 88865 5676654421    111  2457888876 589999999854

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.06  E-value=0.0024  Score=62.42  Aligned_cols=64  Identities=20%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CC-CC----CC---CCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VT-YP----FY---PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~-~~----~~---~~l~ell~~aDvV~l~~P~t  220 (330)
                      .+++++|+|.|.||+.+++.|...|.+|.+++|+....      .+ ..    ..   .++.++++.+|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            47899999999999999999999999999998865321      01 10    11   24557788999999999864

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.06  E-value=0.0052  Score=57.83  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             CceEEEEecChHHHHHHHHHHhC--------CCEEE-EECCCCCCCC------CC-CCCCCHHHHhhc--CCEEEEeccC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF--------GCCVS-YNSRNKKPSV------TY-PFYPDVCELAAN--SDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~--------G~~V~-~~~~~~~~~~------~~-~~~~~l~ell~~--aDvV~l~~P~  219 (330)
                      --+|||||+|.||+.-++.++..        +++|. ++|+++....      +. ..+.+++++++.  .|+|++++|.
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence            34899999999999877766542        56765 6788765421      32 246799999964  7999999986


Q ss_pred             Ccc
Q 020160          220 TDQ  222 (330)
Q Consensus       220 t~~  222 (330)
                      .-.
T Consensus       105 ~~H  107 (393)
T 4fb5_A          105 QFH  107 (393)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            544

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.06  E-value=0.046  Score=53.13  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCC---C-----------------CCCC--CCCCCHHHHh-h
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKK---P-----------------SVTY--PFYPDVCELA-A  208 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~---~-----------------~~~~--~~~~~l~ell-~  208 (330)
                      |.++.|+++.|.|+|++|+.+|+.|...|.+|+. .|.+..   +                 ..++  ....+.++++ .
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            4578999999999999999999999999999984 444210   0                 0001  0112445665 3


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .+ -.+.|.+..|.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCE
Confidence            6999988754     3456666666774 5677887888764 33 33556666664

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.06  E-value=0.02  Score=54.00  Aligned_cols=82  Identities=13%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .+|||+| .|.||+.+.+.|.... +++.+..+......          +  .....++++ +..+|+|++|+|.....+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            5899999 7999999999998655 47665544322211          0  001223444 478999999998764322


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                       +. .   ..++.|..+|+.|-
T Consensus        84 -~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           84 -EF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             -TH-H---HHHTTCSEEEECSS
T ss_pred             -HH-H---HHHHCCCEEEEcCc
Confidence             21 1   22467888999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.05  E-value=0.024  Score=52.02  Aligned_cols=105  Identities=12%  Similarity=0.062  Sum_probs=73.4

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC--CCCCCCCCCHHHHhhcCCEEEEeccCCc----------cc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP--SVTYPFYPDVCELAANSDVLIICCALTD----------QT  223 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~P~t~----------~t  223 (330)
                      +.|++|.|+|........++.|...|++|.+..-....  ..+.....++.+.++++|+|+...|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            67899999999999999999999999999876432211  1122223456778899999987444321          22


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          224 HHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ...++++.++.++++.+++ ++    +|..++.+++.+..|.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCC
T ss_pred             CccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCE
Confidence            3347888999999988877 33    2666766677666664

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.04  E-value=0.013  Score=54.00  Aligned_cols=103  Identities=20%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEE-EEECCCCC--CCCCCCCCCCHHHHhh--c-CCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCV-SYNSRNKK--PSVTYPFYPDVCELAA--N-SDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V-~~~~~~~~--~~~~~~~~~~l~ell~--~-aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .++.|+|. |++|+.+++.+...|+++ ..+++...  ...+...+.+++|+..  . .|++++++|.... ...+ .+.
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~-~~~v-~ea   91 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFA-PDAV-YEA   91 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGH-HHHH-HHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHH-HHHH-HHH
Confidence            35677798 999999999999889984 34554321  1134555789999987  5 9999999986433 3332 233


Q ss_pred             HhcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVGRG-AIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~rg-~~vd~~aL~~aL~~g~i~  265 (330)
                      .+ ..... +|..+.| ..-+++.+.++.++..+.
T Consensus        92 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           92 VD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            33 23222 3334433 223456788888776653

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.04  E-value=0.0095  Score=57.55  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=46.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCCCCCCHHHHhhcCCEEEE
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~ell~~aDvV~l  215 (330)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++++.+....          .......+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999999999987654310          11111235566778998874

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.04  E-value=0.0093  Score=55.29  Aligned_cols=90  Identities=17%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---------------CCC--CCCCHHHHhhcCCEEEEeccCCc
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---------------TYP--FYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---------------~~~--~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      +|+|||.|.+|..+|..+...|+ +|..+|...+...               ...  ...+. +.++.||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            68999999999999999876676 6999998764211               111  11344 67899999999976433


Q ss_pred             ccccc-----c--c----HH---HHhcCCCCcEEEEcCCCcccCHH
Q 020160          222 QTHHL-----I--N----KQ---VLLALGKKGVIINVGRGAIIDEK  253 (330)
Q Consensus       222 ~t~~l-----i--~----~~---~l~~mk~gailIN~~rg~~vd~~  253 (330)
                       ..++     +  |    .+   .+....|++++|+++-  .+|.-
T Consensus        80 -k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~  122 (308)
T 2d4a_B           80 -KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDAM  122 (308)
T ss_dssp             -CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHH
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHHH
Confidence             1121     0  0    11   2333358999999844  45443

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.03  E-value=0.015  Score=56.67  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---CCCCC-------------CCCCH-------------
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---SVTYP-------------FYPDV-------------  203 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~-------------~~~~l-------------  203 (330)
                      +.++.|+|+.|=|+|++|..+|+.|...|.+|++.+.+...   ..+..             ....+             
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            45689999999999999999999999999999865432210   00000             00011             


Q ss_pred             -HHH-hhcCCEEEEeccCCccccccccHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          204 -CEL-AANSDVLIICCALTDQTHHLINKQVLLALGKK--GVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       204 -~el-l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g--ailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       +++ -..||+.+=|.     +.+.|+.+..+.++..  .++++-+-+.+-.+ + .+.|.+..|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence             121 23588776553     4566787777777643  46777777765433 3 3566666664

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.03  E-value=0.018  Score=54.48  Aligned_cols=86  Identities=13%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC------CEEEEEC-CC-CCCCC--------C---CCCC-CCHHHHhhcCCEEEEec
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG------CCVSYNS-RN-KKPSV--------T---YPFY-PDVCELAANSDVLIICC  217 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G------~~V~~~~-~~-~~~~~--------~---~~~~-~~l~ell~~aDvV~l~~  217 (330)
                      ++|+|+| .|.+|+.+.+.|...+      .++.... ++ ..+..        +   .... .+. +.+..+|+|++|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            6899999 9999999999998766      4666553 22 11100        0   0110 122 3456899999999


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                      |...      ..+..+.++.|..+|+.|.---.+
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~  116 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLT  116 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCS
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCC
Confidence            8763      234444446689999987544433

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.02  E-value=0.028  Score=54.41  Aligned_cols=105  Identities=14%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEE-CCCC----CC---CCC------------------C--CCCCCHH
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN-SRNK----KP---SVT------------------Y--PFYPDVC  204 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~----~~---~~~------------------~--~~~~~l~  204 (330)
                      |.++.|+++.|.|+|++|+.+|+.|...|++|+.. |.++    ..   ..+                  +  ....+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            45689999999999999999999999999999854 4441    10   000                  0  0011223


Q ss_pred             HHh-hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          205 ELA-ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       205 ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +++ ..||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .+ -.+.|.+..|.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            333 35888876653     4467777777774 5677777777764 33 33555555554

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.01  E-value=0.0098  Score=54.57  Aligned_cols=36  Identities=36%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .||++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            5789999997 99999999999999999999988764

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.00  E-value=0.031  Score=54.04  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=71.9

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEE-EECCCCC---C-------------CCC----C-CCCCCHHHHh-hc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKK---P-------------SVT----Y-PFYPDVCELA-AN  209 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~---~-------------~~~----~-~~~~~l~ell-~~  209 (330)
                      |.++.|+|+.|-|+|++|+.+|+.|...|.+|+ +.|.+..   +             ..+    + ....+-++++ ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            456899999999999999999999999999986 4444310   0             001    0 1122456654 56


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ||+++=|..     .+.|+.+....++ -.+++-.+-+.+- . +..+.|.+..|.
T Consensus       296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI~  343 (424)
T 3k92_A          296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGVL  343 (424)
T ss_dssp             CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTCE
T ss_pred             ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCCE
Confidence            999876653     4567777777774 5677888888863 3 345777777774

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.98  E-value=0.0069  Score=56.69  Aligned_cols=93  Identities=18%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------C------CCCCCCHHHHhhcCCEEEEeccCCc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------T------YPFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------~------~~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      .++|+|||.|.+|..++..+...+.  ++..+|...+...        .      .....+..+.++.||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4799999999999999999986665  8889998643210        0      0011234567999999999986432


Q ss_pred             ccccc-------cc-------HHHHhcCCCCcEEEEcCCCcccCHH
Q 020160          222 QTHHL-------IN-------KQVLLALGKKGVIINVGRGAIIDEK  253 (330)
Q Consensus       222 ~t~~l-------i~-------~~~l~~mk~gailIN~~rg~~vd~~  253 (330)
                      . .++       .|       .+.+....|.++++++  ...+|.-
T Consensus        89 k-~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~  131 (326)
T 2zqz_A           89 K-PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDIL  131 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHH
T ss_pred             C-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHH
Confidence            2 211       01       1122333689999998  4455543

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.96  E-value=0.078  Score=49.55  Aligned_cols=92  Identities=13%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             cccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCC--C----------------CC--CCCCCCHHHHhhcCC
Q 020160          154 SKLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKP--S----------------VT--YPFYPDVCELAANSD  211 (330)
Q Consensus       154 ~~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~--~----------------~~--~~~~~~l~ell~~aD  211 (330)
                      ..+.|.+|++||=|  ++.++++..+..+|++|.+..+..-.  .                .+  +....++++.++++|
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aD  236 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVD  236 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCS
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCC
Confidence            35889999999965  89999999999999999887764322  1                11  123568999999999


Q ss_pred             EEEEe----ccCCcc---------ccccccHHHHhcCCCCcEEEEcC
Q 020160          212 VLIIC----CALTDQ---------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       212 vV~l~----~P~t~~---------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      +|..-    +...++         ...-++.+.++.+|++++|.-+.
T Consensus       237 vvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          237 VVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            99852    220110         12457889999999999999885

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.94  E-value=0.0065  Score=56.79  Aligned_cols=87  Identities=29%  Similarity=0.351  Sum_probs=60.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC-CCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF-YPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++..     +... ..+.+++.+..|+|+-++.....   +  ..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~---~--~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD---L--KD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC---H--HH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH---H--HH
Confidence            488999999999999999999999999999888765421     2211 12223333367888776653321   1  45


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 020160          231 VLLALGKKGVIINVGRGA  248 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~  248 (330)
                      .++.++++..++.+|...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            677788888888886543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.92  E-value=0.007  Score=55.52  Aligned_cols=100  Identities=17%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             ceEEEEecChHHHHHHHHHHh----CCCEEE-EECCCCCCC-CCCCCCCCHHHHhh--cCCEEEEeccCCccccccccHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA----FGCCVS-YNSRNKKPS-VTYPFYPDVCELAA--NSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~----~G~~V~-~~~~~~~~~-~~~~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .+|||||+|.||+..++.+..    -++++. +++++.... .+.. +.+++++++  +.|+|++++|...+..     .
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~-----~   81 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHED-----Y   81 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH-----H
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH-----H
Confidence            589999999999999888764    356765 566653221 1222 468999997  6899999998654332     2


Q ss_pred             HHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHcCCc
Q 020160          231 VLLALGKKG-VIINVG-RGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       231 ~l~~mk~ga-ilIN~~-rg~~vd~~aL~~aL~~g~i  264 (330)
                      ....++.|. +++.-- --.+-+.++|.++.++..+
T Consensus        82 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  117 (294)
T 1lc0_A           82 IRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (294)
T ss_dssp             HHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            333444454 666531 1233344667777765544

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.92  E-value=0.026  Score=53.07  Aligned_cols=63  Identities=17%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCCC-----------------CCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTYPF-----------------YPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~~~-----------------~~~l~ell~~aDvV  213 (330)
                      .+|||+|+|.||+.+++.+... ++++. +.++++...      .++..                 ..++++++.++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998764 46765 455543210      01111                 12445666789999


Q ss_pred             EEeccCCc
Q 020160          214 IICCALTD  221 (330)
Q Consensus       214 ~l~~P~t~  221 (330)
                      +.|+|...
T Consensus        82 ~~aTp~~~   89 (340)
T 1b7g_O           82 VDTTPNGV   89 (340)
T ss_dssp             EECCSTTH
T ss_pred             EECCCCch
Confidence            99998653

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.92  E-value=0.0031  Score=60.10  Aligned_cols=64  Identities=19%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             ceEEEEecC-hHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCCCCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          159 KRVGIVGLG-SIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTYPFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G-~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      .+|||||+| .+|+..++.++.. ++++. ++|+++...      .+...+.+++++++.  .|+|++++|...+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH
Confidence            589999999 9999999998875 56765 677765431      144456799999975  9999999986543

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.90  E-value=0.0064  Score=59.80  Aligned_cols=110  Identities=12%  Similarity=0.017  Sum_probs=68.3

Q ss_pred             CceEEEEecChH-HHHHHHHHHhC-----CCEEEEECCCCCCC---------------CC--CCCCCCHHHHhhcCCEEE
Q 020160          158 GKRVGIVGLGSI-GSEVAKRLEAF-----GCCVSYNSRNKKPS---------------VT--YPFYPDVCELAANSDVLI  214 (330)
Q Consensus       158 g~~vgIiG~G~I-G~~~A~~l~~~-----G~~V~~~~~~~~~~---------------~~--~~~~~~l~ell~~aDvV~  214 (330)
                      .++|+|||.|.. |.++|..|...     +.+|..||+..+..               ..  .....++++.++.||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            569999999998 66677666544     56899999876421               01  111357888999999999


Q ss_pred             EeccCCcc---cc--------c--------------------ccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 020160          215 ICCALTDQ---TH--------H--------------------LIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLR  261 (330)
Q Consensus       215 l~~P~t~~---t~--------~--------------------li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~  261 (330)
                      +++|....   ++        +                    ++-  .+.+....|++++||++-.-=+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11        0                    000  123444568999999976543333444444333


Q ss_pred             CCceEE
Q 020160          262 GEIGGA  267 (330)
Q Consensus       262 g~i~ga  267 (330)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            356555

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.89  E-value=0.055  Score=51.13  Aligned_cols=91  Identities=13%  Similarity=0.130  Sum_probs=67.9

Q ss_pred             cCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +.|.+|++||=|  ++..+++..+..+|++|.+..+..-...              +  +....++++.++++|+|..-.
T Consensus       174 l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  253 (359)
T 2w37_A          174 LQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDV  253 (359)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcc
Confidence            789999999985  9999999999999999988776432111              1  223578999999999998743


Q ss_pred             cC--Cc----c-----ccccccHHHHhcCC---CCcEEEEcCC
Q 020160          218 AL--TD----Q-----THHLINKQVLLALG---KKGVIINVGR  246 (330)
Q Consensus       218 P~--t~----~-----t~~li~~~~l~~mk---~gailIN~~r  246 (330)
                      =.  .+    +     ...-++.+.++.+|   |+++|.-+.-
T Consensus       254 w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          254 WVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             SCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             cccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence            20  00    0     13456888999999   8999998854

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.87  E-value=0.0049  Score=57.62  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=46.7

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCCC------CC-CCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPSV------TY-PFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~~------~~-~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      .++||||+|.||+. .+..++.. +++|. ++|+++....      +. ..+.+++++++.  .|+|++++|....
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh
Confidence            38999999999986 56677665 67775 6787754321      33 246799999965  7999999986544

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.85  E-value=0.0062  Score=57.17  Aligned_cols=92  Identities=17%  Similarity=0.123  Sum_probs=60.1

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC--------CC--------CCCCCCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS--------VT--------YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------~~--------~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .++++.|.| .|.||+.+++.|...|++|.+.+|++...        .+        .....++.++++.+|+|+.++..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            468999999 59999999999999999999888865431        01        11112356778999999876654


Q ss_pred             CccccccccHHHHhcCCC-C--cEEEEcCCCc
Q 020160          220 TDQTHHLINKQVLLALGK-K--GVIINVGRGA  248 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~-g--ailIN~~rg~  248 (330)
                      ............++.++. |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            311112223444444432 3  4788888764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.82  E-value=0.01  Score=54.15  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=33.2

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.|+++.|+| .|.||+++++.|...|++|+..+|+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            5789999999 99999999999999999999988864

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.79  E-value=0.052  Score=51.24  Aligned_cols=92  Identities=10%  Similarity=0.065  Sum_probs=65.2

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC------------------CCCCCCCHHHHhhcCCEEE
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------------TYPFYPDVCELAANSDVLI  214 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------~~~~~~~l~ell~~aDvV~  214 (330)
                      ..+.|.+|++||= -++.++++..+..+|++|.+..+..-...                  .+....+++|.++++|+|.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy  263 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV  263 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence            4589999999994 47888999999999999988876432110                  1123468999999999997


Q ss_pred             Eec--cCCcc----------ccccccHHHHhc--CCCCcEEEEcC
Q 020160          215 ICC--ALTDQ----------THHLINKQVLLA--LGKKGVIINVG  245 (330)
Q Consensus       215 l~~--P~t~~----------t~~li~~~~l~~--mk~gailIN~~  245 (330)
                      .-.  +...+          ...-++.+.++.  +|++++|.-+.
T Consensus       264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            632  11111          123578888888  88888888875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.78  E-value=0.012  Score=54.34  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=46.9

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .....+|+|.|.|. |.||+.+++.|...|++|++.+|+.....      ......++.+++..+|+|+.+....
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            34678999999997 99999999999999999999988764311      1111234667889999998776543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.76  E-value=0.096  Score=50.54  Aligned_cols=105  Identities=21%  Similarity=0.233  Sum_probs=69.6

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHh-CCCEEEE-ECCCCC---C-----------------CCCCC--CCCCHHHHh-
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEA-FGCCVSY-NSRNKK---P-----------------SVTYP--FYPDVCELA-  207 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~-~G~~V~~-~~~~~~---~-----------------~~~~~--~~~~l~ell-  207 (330)
                      |.++.|+++.|.|+|++|+.+|+.|.. .|.+|+. .|.+..   +                 ..++.  ...+.++++ 
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            557899999999999999999999998 9999984 443210   0                 00010  112345655 


Q ss_pred             hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ..||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .++ .+.|.+..+.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            47999887764     3456777777774 4577777777764 333 3556666664

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.74  E-value=0.0049  Score=60.33  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=37.2

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +|...+++|+++.|||.|.+|...++.|...|.+|+++++..
T Consensus         4 ~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            345567899999999999999999999999999999998753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.74  E-value=0.015  Score=53.62  Aligned_cols=67  Identities=12%  Similarity=-0.008  Sum_probs=49.2

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-------CC-------CCCCCHHHHhh--cCCEEEE
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TY-------PFYPDVCELAA--NSDVLII  215 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~-------~~~~~l~ell~--~aDvV~l  215 (330)
                      ...+.||+|.|.|. |.||+.+++.|...|++|++.+|+.....       ..       ....+++++++  .+|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            34688999999997 99999999999999999999888543211       11       11123556777  8999887


Q ss_pred             eccC
Q 020160          216 CCAL  219 (330)
Q Consensus       216 ~~P~  219 (330)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7654

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.71  E-value=0.02  Score=53.21  Aligned_cols=91  Identities=15%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             ccCCceEEEEec---ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCC--CCCCHHHHhhcCCEEEEeccC
Q 020160          155 KLGGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYP--FYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       155 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .+.|.+|++||=   |++.++++..+..+|++|.+..+..-...          +..  ...++++.++++|+|..-.=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            378999999997   58999999999999999988776432111          222  246899999999999874421


Q ss_pred             C------ccc-----cccccHHHHhcCCCCcEEEEcC
Q 020160          220 T------DQT-----HHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       220 t------~~t-----~~li~~~~l~~mk~gailIN~~  245 (330)
                      .      ++.     ..-++.+.++.+||+++|.-+.
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            1      111     2456778888888888888775

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.68  E-value=0.02  Score=53.17  Aligned_cols=94  Identities=15%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCC--CEEEEECCCCCCC------CCC-----CC---CCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFG--CCVSYNSRNKKPS------VTY-----PF---YPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~~------~~~-----~~---~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      ++|+|||. |.+|..++..|...|  .+|..+|+.+...      ...     ..   ..++++.++.||+|+++.....
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            48999998 999999999998777  5888888865210      010     11   1357778999999999875332


Q ss_pred             c---cc-ccc--c----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          222 Q---TH-HLI--N----K---QVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       222 ~---t~-~li--~----~---~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      .   ++ .++  |    .   +.+....|++++|++  ...+|.-.
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            1   11 010  1    1   122333588999997  45666554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.68  E-value=0.025  Score=51.69  Aligned_cols=65  Identities=17%  Similarity=0.102  Sum_probs=48.3

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC--------------------CCCCCCCCCHHHHhhcCCEE
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP--------------------SVTYPFYPDVCELAANSDVL  213 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~~l~ell~~aDvV  213 (330)
                      .+.|++|.|.|. |.||+.+++.|...|++|++.+|+...                    ........+++++++.+|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467999999997 999999999999999999988875321                    00111233566677789998


Q ss_pred             EEeccC
Q 020160          214 IICCAL  219 (330)
Q Consensus       214 ~l~~P~  219 (330)
                      +.+...
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            877643

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.68  E-value=0.011  Score=55.30  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CCC------------------CCCCCHHHHhhcCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VTY------------------PFYPDVCELAANSDV  212 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~~------------------~~~~~l~ell~~aDv  212 (330)
                      .++||+|+|.||+.+++.+... ++++. +++++++..      .++                  ....+.++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4899999999999999999865 46764 455543211      011                  223578888889999


Q ss_pred             EEEeccCCcc
Q 020160          213 LIICCALTDQ  222 (330)
Q Consensus       213 V~l~~P~t~~  222 (330)
                      |+.|+|...+
T Consensus        83 V~~aTp~~~h   92 (334)
T 2czc_A           83 IVDATPGGIG   92 (334)
T ss_dssp             EEECCSTTHH
T ss_pred             EEECCCcccc
Confidence            9999986643

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.67  E-value=0.0052  Score=58.74  Aligned_cols=65  Identities=15%  Similarity=0.049  Sum_probs=49.6

Q ss_pred             CceEEEEecCh---HHHHHHHHHHhCC-CEEE--EECCCCCCC------CCC---CCCCCHHHHhhc-------CCEEEE
Q 020160          158 GKRVGIVGLGS---IGSEVAKRLEAFG-CCVS--YNSRNKKPS------VTY---PFYPDVCELAAN-------SDVLII  215 (330)
Q Consensus       158 g~~vgIiG~G~---IG~~~A~~l~~~G-~~V~--~~~~~~~~~------~~~---~~~~~l~ell~~-------aDvV~l  215 (330)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++|+++...      .+.   ..+.+++++++.       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            46899999999   9999988887655 6775  468765431      133   457899999975       899999


Q ss_pred             eccCCcc
Q 020160          216 CCALTDQ  222 (330)
Q Consensus       216 ~~P~t~~  222 (330)
                      ++|....
T Consensus        92 ~tp~~~H   98 (398)
T 3dty_A           92 ATPNGTH   98 (398)
T ss_dssp             ESCGGGH
T ss_pred             CCCcHHH
Confidence            9997644

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.66  E-value=0.011  Score=50.90  Aligned_cols=88  Identities=13%  Similarity=0.140  Sum_probs=57.5

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC-----C-CCHHHHhhcCCEEEEeccCC--ccc-
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF-----Y-PDVCELAANSDVLIICCALT--DQT-  223 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~-~~l~ell~~aDvV~l~~P~t--~~t-  223 (330)
                      ++|.|.|. |.||+.+++.|...|++|.+.+|++...     .+...     . .+. +.+..+|+|+.++...  +.. 
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   79 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRG   79 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchh
Confidence            47899997 9999999999999999999998875321     11110     0 112 6788999998887542  110 


Q ss_pred             --cccccHHHHhcCCC-CcEEEEcCCC
Q 020160          224 --HHLINKQVLLALGK-KGVIINVGRG  247 (330)
Q Consensus       224 --~~li~~~~l~~mk~-gailIN~~rg  247 (330)
                        .-......++.|+. |..+|++|..
T Consensus        80 ~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           80 YLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             hHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence              00112345666653 4678888763

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.66  E-value=0.034  Score=51.11  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHHh-CCCEEE-EECCCCCC-------------CCCCCCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEA-FGCCVS-YNSRNKKP-------------SVTYPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~-------------~~~~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+|+|+| +|+||+.+++.+.. -++++. +++++...             ..++....++++++.++|+|+-..+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~   97 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ   97 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC
Confidence            5899999 99999999999864 578865 56775432             1133446799999999999987654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.63  E-value=0.013  Score=55.07  Aligned_cols=97  Identities=14%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------C--C------CCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------T--Y------PFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------~--~------~~~~~l~ell~~aDvV~l~  216 (330)
                      ....++|+|||.|.||..+|..+...|.  ++..+|.......        .  +      ....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999999887777  8999998653110        0  0      0123444 58999999998


Q ss_pred             ccCCc---ccc-cccc---------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          217 CALTD---QTH-HLIN---------KQVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       217 ~P~t~---~t~-~li~---------~~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                      .-...   .+| .++.         .+.+....|++++++++  ..+|.-+
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvdi~t  143 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS--NPVDILT  143 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--ChHHHHH
Confidence            53221   122 1221         12334457899999997  4455433

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.62  E-value=0.033  Score=51.50  Aligned_cols=35  Identities=29%  Similarity=0.092  Sum_probs=30.9

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..++|.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4679999997 9999999999999999999998876

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.60  E-value=0.0098  Score=55.84  Aligned_cols=99  Identities=13%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhC---------CCEEE-EECCCCCCCCCC---CCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF---------GCCVS-YNSRNKKPSVTY---PFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~---------G~~V~-~~~~~~~~~~~~---~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .++||||+|.||+.+++.+...         +++|. +++++.....+.   ..+.++++++ +.|+|+.++|...... 
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~-   81 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPL-   81 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHH-
Confidence            4799999999999999998765         45664 567665433222   2245777888 9999999988552211 


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 020160          226 LINKQVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRG  262 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g  262 (330)
                         .-..+.++.|.-+|-..-..+ -.-++|.++-+++
T Consensus        82 ---~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           82 ---RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             ---HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             ---HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence               112234455544444211111 2445666666665

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.59  E-value=0.025  Score=53.23  Aligned_cols=37  Identities=22%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..+++++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            35899999999999999999999999998 67777754

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.59  E-value=0.018  Score=50.19  Aligned_cols=65  Identities=25%  Similarity=0.247  Sum_probs=49.7

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCC--EEEEECCCCCCCCC------------CCCCCCHHHHhhcCCEEEEeccCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGC--CVSYNSRNKKPSVT------------YPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~~------------~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +.+|++.|.| .|.||+.+++.|...|+  +|++.+|++.....            .....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            4688999999 69999999999999999  99998887653221            111235667788899999887643

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.58  E-value=0.015  Score=56.90  Aligned_cols=63  Identities=11%  Similarity=0.034  Sum_probs=45.8

Q ss_pred             CceEEEEecChH-HHHHHHHHHh----C-CCEEEEECCCC--CCC-------------C--C--CCCCCCHHHHhhcCCE
Q 020160          158 GKRVGIVGLGSI-GSEVAKRLEA----F-GCCVSYNSRNK--KPS-------------V--T--YPFYPDVCELAANSDV  212 (330)
Q Consensus       158 g~~vgIiG~G~I-G~~~A~~l~~----~-G~~V~~~~~~~--~~~-------------~--~--~~~~~~l~ell~~aDv  212 (330)
                      .++|+|||.|.. |.+++..|..    + +.+|..||+..  +..             .  .  .....++.+.++.||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            469999999999 8887766654    3 55799999977  320             0  1  1113577889999999


Q ss_pred             EEEeccCC
Q 020160          213 LIICCALT  220 (330)
Q Consensus       213 V~l~~P~t  220 (330)
                      |++++|..
T Consensus        87 VVitagv~   94 (450)
T 1s6y_A           87 VTTQFRVG   94 (450)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            99999853

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.58  E-value=0.011  Score=54.94  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=59.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC-------C-------CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV-------T-------YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~-------~-------~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      +||+|||.|.+|.+++..+...+  -++..+|...+...       .       .....+-.+.++.||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999998766  47889998653210       0       01111235679999999998864432


Q ss_pred             cccc-------cc-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 020160          223 THHL-------IN-------KQVLLALGKKGVIINVGRGAIIDEKE  254 (330)
Q Consensus       223 t~~l-------i~-------~~~l~~mk~gailIN~~rg~~vd~~a  254 (330)
                       .++       .|       .+.+....|.+++++++  ..+|.-.
T Consensus        81 -~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t  123 (310)
T 2xxj_A           81 -PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVDVMT  123 (310)
T ss_dssp             -TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHHH
T ss_pred             -CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence             111       01       11223337899999983  4454433

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.55  E-value=0.028  Score=49.87  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ++.||++.|.|. |.||+++|+.|...|++|+..+++...
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            578999999995 799999999999999999998887653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.55  E-value=0.007  Score=56.93  Aligned_cols=88  Identities=26%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC---C--C-CHHH-HhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF---Y--P-DVCE-LAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~---~--~-~l~e-ll~~aDvV~l~~P~t~~t~  224 (330)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++.+..     +...   +  . ++.+ +....|+|+-++..++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            478999999999999999999999999999887765421     2211   0  1 2222 2236788888776420  0


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCC
Q 020160          225 HLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg  247 (330)
                      ..+ ...++.+++++.++.++..
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecCC
Confidence            111 3456778888888888653

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.52  E-value=0.0054  Score=59.58  Aligned_cols=65  Identities=9%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhC-CCEE-EEECCCCCCC---------CC---CCCCC----CHHHHhh--cCCEEEEec
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF-GCCV-SYNSRNKKPS---------VT---YPFYP----DVCELAA--NSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~-G~~V-~~~~~~~~~~---------~~---~~~~~----~l~ell~--~aDvV~l~~  217 (330)
                      -.+|||||+|.||+..++.++.. |++| .++|+++...         .+   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988875 6776 4678765421         01   22355    8999997  589999999


Q ss_pred             cCCcc
Q 020160          218 ALTDQ  222 (330)
Q Consensus       218 P~t~~  222 (330)
                      |....
T Consensus       100 p~~~h  104 (444)
T 2ixa_A          100 PWEWH  104 (444)
T ss_dssp             CGGGH
T ss_pred             CcHHH
Confidence            85543

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.52  E-value=0.0076  Score=53.02  Aligned_cols=64  Identities=16%  Similarity=0.133  Sum_probs=44.7

Q ss_pred             CCceEEEEecChHHHHHHHHH--HhCCCEEE-EECCCCC-CC-----CCCC--CCCCHHHHhhc--CCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRL--EAFGCCVS-YNSRNKK-PS-----VTYP--FYPDVCELAAN--SDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l--~~~G~~V~-~~~~~~~-~~-----~~~~--~~~~l~ell~~--aDvV~l~~P~t  220 (330)
                      ..++++|+|+|++|+.+++.+  ...|+++. ++|.++. ..     .+..  ..+++++++++  .|.+++++|..
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            346899999999999999973  45688875 5676665 32     1221  13567777764  89999999854

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.48  E-value=0.046  Score=50.74  Aligned_cols=90  Identities=14%  Similarity=0.184  Sum_probs=65.4

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhC-CCEEEEECCCCCCCC----------CC--CCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAF-GCCVSYNSRNKKPSV----------TY--PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~----------~~--~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +.|.+|++||=   |++.++++..+..+ |++|.+..+..-...          +.  ....++++.++++|+|..-.=-
T Consensus       152 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (310)
T 3csu_A          152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ  231 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC--
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            68999999997   59999999999999 999988776432111          22  2346899999999999875321


Q ss_pred             Cc----cc------cccccHHHHhcCCCCcEEEEcC
Q 020160          220 TD----QT------HHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       220 t~----~t------~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+    +.      ..-++.+.++.+||+++|.-+.
T Consensus       232 ~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ---------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            11    00      2456788888888898888875

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.48  E-value=0.0089  Score=57.61  Aligned_cols=65  Identities=22%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             CceEEEEecCh---HHHHHHHHHHhCC-CEEE--EECCCCCCC------CCC---CCCCCHHHHhhc-------CCEEEE
Q 020160          158 GKRVGIVGLGS---IGSEVAKRLEAFG-CCVS--YNSRNKKPS------VTY---PFYPDVCELAAN-------SDVLII  215 (330)
Q Consensus       158 g~~vgIiG~G~---IG~~~A~~l~~~G-~~V~--~~~~~~~~~------~~~---~~~~~l~ell~~-------aDvV~l  215 (330)
                      -.+|||||+|.   ||+..+..++..+ +++.  ++++++...      .+.   ..+.+++++++.       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999888887665 6765  567765431      133   357899999976       999999


Q ss_pred             eccCCcc
Q 020160          216 CCALTDQ  222 (330)
Q Consensus       216 ~~P~t~~  222 (330)
                      ++|....
T Consensus       117 ~tp~~~H  123 (417)
T 3v5n_A          117 VTPNHVH  123 (417)
T ss_dssp             CSCTTSH
T ss_pred             CCCcHHH
Confidence            9996644

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.48  E-value=0.0051  Score=58.94  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=46.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhC---------CCEEE-EECCCCCCCC------CC-CCCCCHHHHhh--cCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF---------GCCVS-YNSRNKKPSV------TY-PFYPDVCELAA--NSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~---------G~~V~-~~~~~~~~~~------~~-~~~~~l~ell~--~aDvV~l~~P~  219 (330)
                      .+|||||+|.||+.-++.++..         +.+|. ++|+++....      +. ..+.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988887653         34654 6777654321      22 34679999996  47999999986


Q ss_pred             Ccc
Q 020160          220 TDQ  222 (330)
Q Consensus       220 t~~  222 (330)
                      ...
T Consensus       107 ~~H  109 (412)
T 4gqa_A          107 HLH  109 (412)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            544

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.47  E-value=0.021  Score=57.67  Aligned_cols=73  Identities=16%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             cEEEeCCC-CchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160          104 VALANAGN-VFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC  182 (330)
Q Consensus       104 I~v~n~~~-~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  182 (330)
                      -...+-.. ......||.+.-+-|-+.|-          ..|+..   . ...+++++|.|||+|.+|..+|+.|...|.
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~~---g-~ekL~~arVLIVGaGGLGs~vA~~La~aGV  350 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPDL---N-LDIIKNTKVLLLGAGTLGCYVSRALIAWGV  350 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTTC---C-HHHHHTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcchh---h-HHHHhCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            44455433 35567777776665433332          234221   1 135899999999999999999999999998


Q ss_pred             -EEEEECCC
Q 020160          183 -CVSYNSRN  190 (330)
Q Consensus       183 -~V~~~~~~  190 (330)
                       +++.+|..
T Consensus       351 G~ItLvD~D  359 (615)
T 4gsl_A          351 RKITFVDNG  359 (615)
T ss_dssp             CEEEEECCC
T ss_pred             CEEEEEcCC
Confidence             67777764

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.46  E-value=0.0062  Score=56.94  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             CceEEEEecC-hHHHHHHHHHHhC--CCEE-EEECCCCCCCC------CC-CCCCCHHHHhh--cCCEEEEeccCCcc
Q 020160          158 GKRVGIVGLG-SIGSEVAKRLEAF--GCCV-SYNSRNKKPSV------TY-PFYPDVCELAA--NSDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G-~IG~~~A~~l~~~--G~~V-~~~~~~~~~~~------~~-~~~~~l~ell~--~aDvV~l~~P~t~~  222 (330)
                      -.++||||+| .+|+..++.++..  ++++ .++|+++....      +. ..+.+++++++  +.|+|++++|....
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            3589999999 8999999999876  5676 46787654321      22 34679999997  58999999986543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.46  E-value=0.054  Score=48.13  Aligned_cols=37  Identities=19%  Similarity=0.419  Sum_probs=32.7

Q ss_pred             ccCCceEEEEec-Ch--HHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVGL-GS--IGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ++.||++.|.|. |.  ||+++|+.|...|++|+..+++.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            578999999997 45  99999999999999999887764

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.42  E-value=0.013  Score=50.84  Aligned_cols=91  Identities=22%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhh---cCCEEEEeccCCcccc------
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAA---NSDVLIICCALTDQTH------  224 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~---~aDvV~l~~P~t~~t~------  224 (330)
                      .+.||++.|.|. |.||+++|+.|...|++|+..+|+...  ......+++++++   ..|+++.+.-......      
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~   80 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL--DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVE   80 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC--CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc--CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCC
Confidence            467999999995 789999999999999999999887642  1222234445544   5788887754321100      


Q ss_pred             -----c----------cccHHHHhcCCCCcEEEEcCCC
Q 020160          225 -----H----------LINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       225 -----~----------li~~~~l~~mk~gailIN~~rg  247 (330)
                           .          .+.+..++.|+++..+||++..
T Consensus        81 ~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence                 0          0123455678878899999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.42  E-value=0.0048  Score=58.16  Aligned_cols=88  Identities=24%  Similarity=0.338  Sum_probs=55.9

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC---CCCC-----CCCCC-C-CH-HHHh---hcCCEEEEeccCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK---KPSV-----TYPFY-P-DV-CELA---ANSDVLIICCALT  220 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~---~~~~-----~~~~~-~-~l-~ell---~~aDvV~l~~P~t  220 (330)
                      ++.|++|.|+|.|.||..+++.++.+|++|++.+++.   +...     +.... . ++ +++.   ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999988875   2210     11100 0 11 1111   2467777666532


Q ss_pred             ccccccccHHHHhcCCCCcEEEEcCC
Q 020160          221 DQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      +..   + ...++.|++++.+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            221   0 345566677777777654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.42  E-value=0.016  Score=54.11  Aligned_cols=92  Identities=15%  Similarity=0.233  Sum_probs=59.3

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCC--CEEEEECCCCCC-------CCCCC----C---CCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFG--CCVSYNSRNKKP-------SVTYP----F---YPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-------~~~~~----~---~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+.+..       .....    .   ..++.+.++.||+|+++.+..
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            46999999 8999999999998878  688888865431       00110    0   114567899999999997643


Q ss_pred             cccccc-------cc----H---HHHhcCCCCcEEEEcCCCcccCH
Q 020160          221 DQTHHL-------IN----K---QVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       221 ~~t~~l-------i~----~---~~l~~mk~gailIN~~rg~~vd~  252 (330)
                      .. .+.       .|    .   +.+....|.+++++.+  ..+|.
T Consensus        88 ~~-~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           88 RK-PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             CC-SSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             CC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            21 111       01    1   1222335788999864  55665

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.39  E-value=0.012  Score=57.89  Aligned_cols=65  Identities=15%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             CceEEEEec----ChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCC---CCCCHHHHhh--cCCEEEEeccC
Q 020160          158 GKRVGIVGL----GSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYP---FYPDVCELAA--NSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~----G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~---~~~~l~ell~--~aDvV~l~~P~  219 (330)
                      -.+|||||+    |.||+..++.++..  +++|. ++|+++...      .+..   .+.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999    99999999999886  67764 678765421      1222   4678999996  68999999985


Q ss_pred             Ccc
Q 020160          220 TDQ  222 (330)
Q Consensus       220 t~~  222 (330)
                      ...
T Consensus       119 ~~H  121 (479)
T 2nvw_A          119 PEH  121 (479)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.36  E-value=0.0073  Score=57.17  Aligned_cols=86  Identities=22%  Similarity=0.285  Sum_probs=59.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC---CCC---HHHHhhcCCEEEEeccCCccccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF---YPD---VCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~---l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .|.+|.|+|.|.+|...++.++.+|++|++.+++++...     +...   +.+   .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            478999999999999999999999999998887654311     2211   111   12223457888877653211   


Q ss_pred             cccHHHHhcCCCCcEEEEcCCC
Q 020160          226 LINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg  247 (330)
                      +  ...++.+++++.++.++..
T Consensus       271 ~--~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          271 L--DDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             H--HHHHTTEEEEEEEEECCCC
T ss_pred             H--HHHHHHhccCCEEEEeccC
Confidence            1  4567778888888888653

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.35  E-value=0.0062  Score=55.58  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=42.6

Q ss_pred             CceEEEEec-ChHHHHHHHHHH-hCCCEEE-EECCCCCCC----C---------CCCCCCCHHHHhhcCCEEEEec
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLE-AFGCCVS-YNSRNKKPS----V---------TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~-~~G~~V~-~~~~~~~~~----~---------~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      ..+|+|+|+ |.||+.+++.+. .-|+++. ++++.+...    .         +.....++++++..+|+|+-++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            368999999 999999999876 4577875 667654321    0         1122456778888999999444

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.35  E-value=0.016  Score=52.87  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=34.8

Q ss_pred             ccccCCceEEEEecC---hHHHHHHHHHHhCCCEEEEECCCC
Q 020160          153 GSKLGGKRVGIVGLG---SIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ...+.||++.|.|.+   .||+++|+.|...|++|+..+++.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            346899999999986   899999999999999999888875

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.34  E-value=0.018  Score=53.86  Aligned_cols=105  Identities=10%  Similarity=0.069  Sum_probs=63.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--------CCEEE-EECCCCCCCCC---------------C-CCCC---CHHHHh-hc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--------GCCVS-YNSRNKKPSVT---------------Y-PFYP---DVCELA-AN  209 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--------G~~V~-~~~~~~~~~~~---------------~-~~~~---~l~ell-~~  209 (330)
                      .++||||+|.||+.+++.+...        +++|. +++++......               . ..+.   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5899999999999999988653        35664 56665432111               1 1233   788887 35


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAI-IDEKEMVGCLLRGEI  264 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~-vd~~aL~~aL~~g~i  264 (330)
                      .|+|+.++|.. .+-..--+-....++.|.-+|-..-..+ .+-++|.++.++...
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv  141 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR  141 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence            89999999975 1111111234455667766665433333 233556666655543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.34  E-value=0.03  Score=55.27  Aligned_cols=62  Identities=21%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCC--CCCCCHHHHhhcCCEEEEeccC
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY--PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~--~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+.......  .....+.+.+.++|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            78999999 69999999999999999999999876543211  1123455677899999876643

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.34  E-value=0.0092  Score=56.32  Aligned_cols=65  Identities=11%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             CceEEEEecChHHH-HHHHHHHhCCCEEE-EECCCCCCC------CC-CCCCCCHHHHhhc--CCEEEEeccCCcc
Q 020160          158 GKRVGIVGLGSIGS-EVAKRLEAFGCCVS-YNSRNKKPS------VT-YPFYPDVCELAAN--SDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG~G~IG~-~~A~~l~~~G~~V~-~~~~~~~~~------~~-~~~~~~l~ell~~--aDvV~l~~P~t~~  222 (330)
                      -.+|||||+|.+|. .++..++.-|+++. ++|+++...      .+ ...+.+++++++.  .|+|++++|....
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H  101 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSER  101 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH
Confidence            46899999999995 56777777889865 678775431      12 3346799999976  8999999986543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.29  E-value=0.032  Score=52.59  Aligned_cols=85  Identities=18%  Similarity=0.232  Sum_probs=58.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCC----CC---CCHHHHhh-----cCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYP----FY---PDVCELAA-----NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~----~~---~~l~ell~-----~aDvV~l~~P  218 (330)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.     .+..    +.   .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 899988766431     1221    11   13433332     4788887764


Q ss_pred             CCccccccccHHHHhcCCCC-cEEEEcCC
Q 020160          219 LTDQTHHLINKQVLLALGKK-GVIINVGR  246 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~g-ailIN~~r  246 (330)
                      ..+.   +  ...++.++++ ..++.++-
T Consensus       272 ~~~~---~--~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGV---M--RNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHH---H--HHHHHTBCTTTCEEEECSC
T ss_pred             CHHH---H--HHHHHHhhcCCcEEEEEcC
Confidence            3211   1  4567778888 88887764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.28  E-value=0.049  Score=49.47  Aligned_cols=95  Identities=22%  Similarity=0.220  Sum_probs=62.3

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC----------CC---------CCCCCCHHHHhh-----
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VT---------YPFYPDVCELAA-----  208 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~---------~~~~~~l~ell~-----  208 (330)
                      .++.||++.|.|. |.||+++|++|...|++|+..+++....          .+         .....+++++++     
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999995 7899999999999999999887765310          01         011122333443     


Q ss_pred             --cCCEEEEeccCCcc-------c----ccc----------ccHHHHhcCCCCcEEEEcCCCc
Q 020160          209 --NSDVLIICCALTDQ-------T----HHL----------INKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       209 --~aDvV~l~~P~t~~-------t----~~l----------i~~~~l~~mk~gailIN~~rg~  248 (330)
                        .-|+++.+.-....       +    +.+          +.+..+..|+++..+||++...
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~  185 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIV  185 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechH
Confidence              67999887532211       0    011          1244567788888999998743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.26  E-value=0.032  Score=52.60  Aligned_cols=84  Identities=23%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC----C---CCHHHHhh-----cCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF----Y---PDVCELAA-----NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~ell~-----~aDvV~l~~P  218 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++.     .+...    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            48899999999999999999999999 899988765431     12110    0   12333222     3677766654


Q ss_pred             CCccccccccHHHHhcCCCC-cEEEEcC
Q 020160          219 LTDQTHHLINKQVLLALGKK-GVIINVG  245 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~g-ailIN~~  245 (330)
                      ..+.   +  ...++.++++ ..++.++
T Consensus       271 ~~~~---~--~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          271 RLDT---M--VTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             CHHH---H--HHHHHHBCTTTCEEEECS
T ss_pred             CHHH---H--HHHHHHhhcCCcEEEEec
Confidence            2111   1  3456667777 6777665

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.24  E-value=0.19  Score=46.12  Aligned_cols=63  Identities=22%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +.|.+|++||=   +++.++.+..+..+|++|.+..+..-...     +.....++++.++++|+|.. +-.
T Consensus       144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            78999999996   89999999999999999988776432111     23346789999999999988 554

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.016  Score=54.02  Aligned_cols=86  Identities=19%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----C--CCCHHHHhh-----cCCEEEEeccC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----F--YPDVCELAA-----NSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~--~~~l~ell~-----~aDvV~l~~P~  219 (330)
                      .|+++.|+|. |.||..+++.++..|++|++.+++....     .+..    .  ..++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4789999999 8999999999999999999988765421     1111    0  124444333     46888776642


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .+.   +  ...++.|++++.+|+++..
T Consensus       249 ~~~---~--~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAA---I--EASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHH---H--HHHTTSEEEEEEEEECCCC
T ss_pred             HHH---H--HHHHHHHhcCCEEEEEeCC
Confidence            211   1  4566778888888888753

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.22  E-value=0.04  Score=49.73  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +++|.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999996 9999999999998899999888875

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.20  E-value=0.024  Score=54.24  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=45.1

Q ss_pred             CCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----C--CC---CC---CCHHHHhhcCCEEEE
Q 020160          151 PLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----T--YP---FY---PDVCELAANSDVLII  215 (330)
Q Consensus       151 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~--~~---~~---~~l~ell~~aDvV~l  215 (330)
                      .++....+++|+|+|-|.+|+.+++.++.+|++|++++ .+....    .  ..   .+   ..+.++++.+|+|+.
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            34555678999999999999999999999999998887 443211    1  10   11   235667889999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.17  E-value=0.036  Score=55.28  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC--------CCCCCCHHH-HhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT--------YPFYPDVCE-LAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~e-ll~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      +++.|+|+|++|+.+|+.|...|.+|++.+.+++....        ......|++ -++++|.++++++.++.  +++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~--ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDST--NIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH--HHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchH--HHHHH
Confidence            78999999999999999999999999999887765321        111223444 37899999999876533  34445


Q ss_pred             HHHhcCCCCc
Q 020160          230 QVLLALGKKG  239 (330)
Q Consensus       230 ~~l~~mk~ga  239 (330)
                      ...+.+.+..
T Consensus       427 ~~ak~l~~~~  436 (565)
T 4gx0_A          427 LACRHLHSHI  436 (565)
T ss_dssp             HHHHHHCSSS
T ss_pred             HHHHHHCCCC
Confidence            5666677763

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.16  E-value=0.03  Score=49.66  Aligned_cols=92  Identities=15%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCC------CCCCCCHHHHhhc-------CCEEEEeccCC--
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVT------YPFYPDVCELAAN-------SDVLIICCALT--  220 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~------~~~~~~l~ell~~-------aDvV~l~~P~t--  220 (330)
                      .||++.|.|. |.||+++|+.|...|++|+..+|+......      .....++++++++       -|+|+.+.-..  
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~  100 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSG  100 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCCC
Confidence            4789999995 789999999999999999999887654321      1111234444443       48888775421  


Q ss_pred             -----ccc----ccc----------ccHHHHhcCCCCcEEEEcCCCc
Q 020160          221 -----DQT----HHL----------INKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       221 -----~~t----~~l----------i~~~~l~~mk~gailIN~~rg~  248 (330)
                           +.+    +.+          +.+..+..|+++..+||++...
T Consensus       101 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          101 GNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             BCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                 111    001          1134556677778899998743

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.15  E-value=0.13  Score=49.63  Aligned_cols=105  Identities=20%  Similarity=0.246  Sum_probs=70.1

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEE-EECCCC-----CCC-----------CC-CC-CCCCHHHHh-hcCCE
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNK-----KPS-----------VT-YP-FYPDVCELA-ANSDV  212 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~-----~~~-----------~~-~~-~~~~l~ell-~~aDv  212 (330)
                      |.++.|+++.|.|+|++|+.+|+.|...|++|+ +.|.+.     +-.           .+ .. +..+-++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            456899999999999999999999999999998 444421     000           01 00 011223333 47999


Q ss_pred             EEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          213 LIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       213 V~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++-|.     +.+.|+.+..+.++ -.+++..+-+.+- .+ -.+.|.+..|.
T Consensus       293 liP~A-----~~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~-A~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAA-----REGALDGDRARQVQ-AQAVVEVANFGLN-PE-AEAYLLGKGAL  337 (419)
T ss_dssp             EEECS-----CTTCBCHHHHTTCC-CSEEEECSTTCBC-HH-HHHHHHHHTCE
T ss_pred             EEecc-----cccccccchHhhCC-ceEEEECCCCcCC-HH-HHHHHHHCCCE
Confidence            88775     34567777777775 3588898888864 33 34666666664

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.14  E-value=0.04  Score=53.87  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             ccCCceEEEEecCh----------HHHHHHHHHHhCCCEEEEECCCCCCCC------------------CCCCCCCHHHH
Q 020160          155 KLGGKRVGIVGLGS----------IGSEVAKRLEAFGCCVSYNSRNKKPSV------------------TYPFYPDVCEL  206 (330)
Q Consensus       155 ~l~g~~vgIiG~G~----------IG~~~A~~l~~~G~~V~~~~~~~~~~~------------------~~~~~~~l~el  206 (330)
                      .+.|++|+|+|+.-          -...+++.|...|.+|.+||+......                  +.....+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            36899999999863          778999999999999999999743210                  11223478889


Q ss_pred             hhcCCEEEEeccCCccccccccHH-HHhcCCCCcEEEEcCCCc
Q 020160          207 AANSDVLIICCALTDQTHHLINKQ-VLLALGKKGVIINVGRGA  248 (330)
Q Consensus       207 l~~aDvV~l~~P~t~~t~~li~~~-~l~~mk~gailIN~~rg~  248 (330)
                      ++.+|.|++++... +.+.+ +.+ ....|+...+++++ |+-
T Consensus       406 ~~~ad~~vi~t~~~-~f~~~-~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKEL-DYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGGS-CHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCCh-hhhcC-CHHHHHHhcCCCCEEEeC-CCc
Confidence            99999999988754 44443 444 44567776668885 654

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.14  E-value=0.3  Score=45.43  Aligned_cols=88  Identities=5%  Similarity=-0.095  Sum_probs=62.4

Q ss_pred             cCCceEEE-----EecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCC--c--
Q 020160          156 LGGKRVGI-----VGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALT--D--  221 (330)
Q Consensus       156 l~g~~vgI-----iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t--~--  221 (330)
                      +. .+|++     +|=+++.++.+..+..+|++|.+..+..-...     .+....++++.++++|+|..-.=..  .  
T Consensus       167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~  245 (324)
T 1js1_X          167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN  245 (324)
T ss_dssp             CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC
T ss_pred             ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc
Confidence            56 89999     99999999999999999999988877543221     2334578999999999998732210  0  


Q ss_pred             -------cccccccHHHHhcCCCCcEEEEcC
Q 020160          222 -------QTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       222 -------~t~~li~~~~l~~mk~gailIN~~  245 (330)
                             .....++.+.++.+| +++|.-+.
T Consensus       246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcL  275 (324)
T 1js1_X          246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHCL  275 (324)
T ss_dssp             TTCCCCCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred             ccchHHHhcCcccCHHHHHhcC-CcEEECCC
Confidence                   012345666666666 66666653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.13  E-value=0.02  Score=51.41  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=46.5

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhC-CCEEEEECCCCCCCC-----CC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAF-GCCVSYNSRNKKPSV-----TY-------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~-----~~-------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|.|.| .|.||+.+++.|... |.+|.+..|++....     +.       ....++.++++.+|+|+.+....
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            4789999 599999999999987 999999888764321     11       11235667889999998876543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.13  E-value=0.02  Score=54.02  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCC--------------CCCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSV--------------TYPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~--------------~~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      +.+++|+|||. |.+|..+|..+..+|.  +|..+|...+...              ......+..+.++.||+|+++.-
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999998 9999999998888884  7999987643110              11113467788999999999853


Q ss_pred             CCcccccc-----c--c-------HHHHhcCCCCcE-EEEcCCCcccCHHHHH
Q 020160          219 LTDQTHHL-----I--N-------KQVLLALGKKGV-IINVGRGAIIDEKEMV  256 (330)
Q Consensus       219 ~t~~t~~l-----i--~-------~~~l~~mk~gai-lIN~~rg~~vd~~aL~  256 (330)
                      . +...++     +  |       .+.+....|.++ +++++  ..+|.-..+
T Consensus        86 ~-p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i  135 (343)
T 3fi9_A           86 A-PRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLV  135 (343)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHH
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHH
Confidence            2 221111     1  1       112333357774 88885  556655544

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.13  E-value=0.065  Score=47.86  Aligned_cols=64  Identities=23%  Similarity=0.164  Sum_probs=46.2

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCC-------CCCCCHHHHhh-------cCCEEEEecc
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-------PFYPDVCELAA-------NSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-------~~~~~l~ell~-------~aDvV~l~~P  218 (330)
                      ++.||++.|.| -|.||+++|+.|...|++|+..+|+.......       ....+++++++       ..|+|+.+.-
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   83 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG   83 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47899999998 58999999999999999999988875432111       11123344444       6899988764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.12  E-value=0.026  Score=52.51  Aligned_cols=106  Identities=21%  Similarity=0.174  Sum_probs=66.2

Q ss_pred             CceEEEEecChHHHH-HHHHHHhCCCEEEEECCCCCCC-------CCCCCC--CCHHHHh-hcCCEEEEe--ccC-Cccc
Q 020160          158 GKRVGIVGLGSIGSE-VAKRLEAFGCCVSYNSRNKKPS-------VTYPFY--PDVCELA-ANSDVLIIC--CAL-TDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~-~A~~l~~~G~~V~~~~~~~~~~-------~~~~~~--~~l~ell-~~aDvV~l~--~P~-t~~t  223 (330)
                      .|++.|||.|.+|.+ +|+.|+..|++|.++|....+.       .+....  .+.+++. .++|+|+..  +|. +|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            579999999999995 9999999999999999865431       122211  2344555 579999886  222 2221


Q ss_pred             c-------ccccH-HHHhc--CCCC-cEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          224 H-------HLINK-QVLLA--LGKK-GVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       224 ~-------~li~~-~~l~~--mk~g-ailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      .       .++++ +.|..  ++.. .+-|--+.|+.--..-+...|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            1       13332 33332  3332 3444445688777777777787643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.12  E-value=0.011  Score=55.19  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=59.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----C-CCCHHHHh----hcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----F-YPDVCELA----ANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~-~~~l~ell----~~aDvV~l~~P~t~~  222 (330)
                      .|++|.|+|.|.||..+++.++.+|++|++.++++...     .+..    . ..++.+.+    ...|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            47899999999999999999999999999998765421     1211    1 12332222    357888877653221


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                         +  ...++.++++..++.++..
T Consensus       244 ---~--~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 ---F--QSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             ---H--HHHHHHEEEEEEEEECCCC
T ss_pred             ---H--HHHHHHhhcCCEEEEeccc
Confidence               1  4567778888888888754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.11  E-value=0.03  Score=52.23  Aligned_cols=88  Identities=18%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCC----CCC---------C--CCC----CCCCCHHHHhhcC
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRN----KKP---------S--VTY----PFYPDVCELAANS  210 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~----~~~---------~--~~~----~~~~~l~ell~~a  210 (330)
                      .++|.|+|. |.+|+.++..|...|+       +|..+|+.    ...         .  ...    ....++.+.++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            468999997 9999999999987775       78889887    210         0  011    1125778899999


Q ss_pred             CEEEEeccCCcc---ccc-cc--c-------HHHHhcC-CCCcEEEEcC
Q 020160          211 DVLIICCALTDQ---THH-LI--N-------KQVLLAL-GKKGVIINVG  245 (330)
Q Consensus       211 DvV~l~~P~t~~---t~~-li--~-------~~~l~~m-k~gailIN~~  245 (330)
                      |+|+++......   ++. ++  |       .+.+... +|.+++|+++
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            999887643221   110 00  1       1123334 4788999997

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.11  E-value=0.39  Score=46.78  Aligned_cols=121  Identities=13%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             CcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC
Q 020160          103 GVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC  182 (330)
Q Consensus       103 gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  182 (330)
                      .|+|.|.--   .-+|=.+++-+++.+|-.                    |+.+...++.|.|.|.-|-.+|+.+...|.
T Consensus       187 ~ipvFnDD~---qGTA~V~lAgllnAlki~--------------------gk~l~d~riV~~GAGaAGigia~ll~~~G~  243 (487)
T 3nv9_A          187 DIPVWHDDQ---QGTASVTLAGLLNALKLV--------------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGA  243 (487)
T ss_dssp             SSCEEETTT---HHHHHHHHHHHHHHHHHH--------------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCcccccc---chHHHHHHHHHHHHHHHh--------------------CCChhhcEEEEECCCHHHHHHHHHHHHcCC
Confidence            799999753   345666788888777642                    456888999999999999999999999998


Q ss_pred             ---EEEEECCCC----CCC-C----------------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCC
Q 020160          183 ---CVSYNSRNK----KPS-V----------------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKK  238 (330)
Q Consensus       183 ---~V~~~~~~~----~~~-~----------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g  238 (330)
                         +++.+|+..    ... .                ......+|.|.++.+|+++=. ...  ..+.++++.++.|.+.
T Consensus       244 ~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~-S~~--~pg~ft~e~V~~Ma~~  320 (487)
T 3nv9_A          244 DPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISL-STP--GPGVVKAEWIKSMGEK  320 (487)
T ss_dssp             CGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEEC-CCS--SCCCCCHHHHHTSCSS
T ss_pred             CcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEe-ccc--CCCCCCHHHHHhhcCC
Confidence               788887642    110 0                001235899999999977643 211  1468999999999999


Q ss_pred             cEEEEcCCCcc
Q 020160          239 GVIINVGRGAI  249 (330)
Q Consensus       239 ailIN~~rg~~  249 (330)
                      +++.=.|....
T Consensus       321 PIIFaLSNPtp  331 (487)
T 3nv9_A          321 PIVFCCANPVP  331 (487)
T ss_dssp             CEEEECCSSSC
T ss_pred             CEEEECCCCCc
Confidence            99998887653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.10  E-value=0.035  Score=51.82  Aligned_cols=86  Identities=20%  Similarity=0.259  Sum_probs=59.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----CC--CC-HHHH---h-----hcCCEEEEe
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----FY--PD-VCEL---A-----ANSDVLIIC  216 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~~--~~-l~el---l-----~~aDvV~l~  216 (330)
                      .|++|.|+|.|.+|...++.++.+|++|++.+++++..     .+..    +.  .+ .+++   .     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            47899999999999999999999999998887765321     1211    11  11 2222   2     258999887


Q ss_pred             ccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          217 CALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       217 ~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      +.....   +  ...++.++++..++.++.+
T Consensus       248 ~g~~~~---~--~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEKC---I--TIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHHH---H--HHHHHHSCTTCEEEECSCC
T ss_pred             CCCHHH---H--HHHHHHHhcCCEEEEEecC
Confidence            753211   1  4567888999999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.10  E-value=0.031  Score=54.54  Aligned_cols=92  Identities=15%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             ccccCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCC----CC--CCCCCCHHHHhhcCCEEEEe
Q 020160          153 GSKLGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPS----VT--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      +..+.|++|+|+|+-          .=...+++.|...|.+|.+||+.....    .+  .....++++.++.+|.|+++
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            345799999999984          346899999999999999999976321    11  23456888999999999998


Q ss_pred             ccCCccccccccHH-HHhcCCCCcEEEEcCCCc
Q 020160          217 CALTDQTHHLINKQ-VLLALGKKGVIINVGRGA  248 (330)
Q Consensus       217 ~P~t~~t~~li~~~-~l~~mk~gailIN~~rg~  248 (330)
                      ++.. +.+. ++.+ ..+.|+ +.+++|+ |+-
T Consensus       393 t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          393 TEWK-EFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             SCCG-GGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             cCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            8654 4443 3434 444576 5688984 644

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.09  E-value=0.036  Score=55.86  Aligned_cols=37  Identities=22%  Similarity=0.484  Sum_probs=32.7

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999998 67777643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.09  E-value=0.035  Score=52.24  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=57.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC----C---CCHHHHhh-----cCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF----Y---PDVCELAA-----NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~ell~-----~aDvV~l~~P  218 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++.     .+...    .   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 899988765431     12211    1   12333222     4788877764


Q ss_pred             CCccccccccHHHHhcCCCC-cEEEEcCC
Q 020160          219 LTDQTHHLINKQVLLALGKK-GVIINVGR  246 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~g-ailIN~~r  246 (330)
                      .. .+  +  ...++.++++ ..++.++-
T Consensus       271 ~~-~~--~--~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RI-ET--M--MNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CH-HH--H--HHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH--H--HHHHHHHhcCCCEEEEEcc
Confidence            32 11  1  4567778888 88887764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.08  E-value=0.032  Score=52.47  Aligned_cols=85  Identities=22%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-----CCC----CC---CCHHHHhh-----cCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-----TYP----FY---PDVCELAA-----NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-----~~~----~~---~~l~ell~-----~aDvV~l~~P  218 (330)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++..     +..    +.   .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            48899999999999999999999999 8999887654321     211    01   12333222     3677777664


Q ss_pred             CCccccccccHHHHhcCCCC-cEEEEcCC
Q 020160          219 LTDQTHHLINKQVLLALGKK-GVIINVGR  246 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~g-ailIN~~r  246 (330)
                      ..+.   +  ...++.++++ ..++.++-
T Consensus       270 ~~~~---~--~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV---M--RAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH---H--HHHHHTBCTTTCEEEECSC
T ss_pred             cHHH---H--HHHHHhhccCCcEEEEEec
Confidence            3211   1  4566777777 77777763

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.08  E-value=0.011  Score=54.02  Aligned_cols=83  Identities=17%  Similarity=0.258  Sum_probs=52.7

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCC---C---CCHHHHhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPF---Y---PDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~---~---~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .|+++.|+|. |.+|..+++.++.+|++|++.++++.+..     +...   .   .++.+.+...|+|+. +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4789999998 99999999999999999999888654321     2111   0   111122245676666 532 1   


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                      .+  ...++.|++++.++.++.
T Consensus       200 ~~--~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          200 EV--EESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             TH--HHHHTTEEEEEEEEEC--
T ss_pred             HH--HHHHHhhccCCEEEEEeC
Confidence            11  455666777777776653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.07  E-value=0.006  Score=52.05  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|+++.|+| .|.||..+++.++..|++|++.++++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            588999999 69999999999999999999888754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.06  E-value=0.054  Score=51.09  Aligned_cols=84  Identities=23%  Similarity=0.270  Sum_probs=54.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC-------CCCHHHHhh-----cCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF-------YPDVCELAA-----NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~-------~~~l~ell~-----~aDvV~l~~P  218 (330)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.     .+...       ..++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58899999999999999999999999 899998776531     12211       122333222     3677776654


Q ss_pred             CCccccccccHHHHhcCCCC-cEEEEcC
Q 020160          219 LTDQTHHLINKQVLLALGKK-GVIINVG  245 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~g-ailIN~~  245 (330)
                      .. .+  +  ...++.++++ ..++.+|
T Consensus       273 ~~-~~--~--~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          273 NV-SV--M--RAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CH-HH--H--HHHHHTBCTTTCEEEECS
T ss_pred             CH-HH--H--HHHHHHhhccCCEEEEEc
Confidence            21 11  1  3456667775 6666665

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.04  E-value=0.042  Score=51.80  Aligned_cols=85  Identities=20%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC----C---CCHHHHhh-----cCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF----Y---PDVCELAA-----NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~----~---~~l~ell~-----~aDvV~l~~P  218 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++.     .+...    .   .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            48899999999999999999999999 899988765431     12110    0   12333222     3677776654


Q ss_pred             CCccccccccHHHHhcCCCC-cEEEEcCC
Q 020160          219 LTDQTHHLINKQVLLALGKK-GVIINVGR  246 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~g-ailIN~~r  246 (330)
                      .. .+  +  ...++.++++ ..++.++-
T Consensus       275 ~~-~~--~--~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TA-QT--L--KAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CH-HH--H--HHHHHTBCTTTCEEEECCC
T ss_pred             CH-HH--H--HHHHHHhhcCCCEEEEECC
Confidence            21 11  1  3556677777 77777654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.04  E-value=0.022  Score=52.54  Aligned_cols=38  Identities=32%  Similarity=0.393  Sum_probs=32.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45899999999999999999999998887 777777543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.04  E-value=0.02  Score=53.99  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEEC--CCCCCC-C----CC-------------CC-CCCHHHHhh-cCCEEE
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNS--RNKKPS-V----TY-------------PF-YPDVCELAA-NSDVLI  214 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~--~~~~~~-~----~~-------------~~-~~~l~ell~-~aDvV~  214 (330)
                      .+|||+| .|.||+.+++.|.... ++|.+..  ++.... .    +.             .. ..+.+++++ .+|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 9999999999998654 5776553  221110 0    00             00 014455556 899999


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      +|+|.....+ +. ...   ++.|..+|+.+-
T Consensus        89 ~atp~~~~~~-~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDLAKK-FE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHHHHH-HH-HHH---HHTTCEEEECCS
T ss_pred             ECCCchHHHH-HH-HHH---HHCCCEEEECCc
Confidence            9998643322 21 122   356888898864

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.03  E-value=0.013  Score=56.42  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC---CEEEEECCCCCCCC------------CC-------CCCCCHHHHhhc--CCEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG---CCVSYNSRNKKPSV------------TY-------PFYPDVCELAAN--SDVLI  214 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~~~------------~~-------~~~~~l~ell~~--aDvV~  214 (330)
                      ++++|+|.|.||+.+++.|...|   .+|.+.+|+.....            ..       ....++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   48988888753210            01       112346677777  89999


Q ss_pred             EeccCC
Q 020160          215 ICCALT  220 (330)
Q Consensus       215 l~~P~t  220 (330)
                      .++|..
T Consensus        82 n~ag~~   87 (405)
T 4ina_A           82 NIALPY   87 (405)
T ss_dssp             ECSCGG
T ss_pred             ECCCcc
Confidence            988743

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.03  E-value=0.028  Score=53.36  Aligned_cols=137  Identities=15%  Similarity=0.191  Sum_probs=83.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc--C
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA--L  235 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~--m  235 (330)
                      -.++-|+|.|.+|+++|+.++.+|++|+++|.++....        .+-+..+|-++..-|          .+.+..  +
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~--------~~~fp~a~~v~~~~p----------~~~~~~~~~  260 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE--------KHFFPDADEIIVDFP----------ADFLRKFLI  260 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC--------GGGCTTCSEEEESCH----------HHHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc--------cccCCCceEEecCCH----------HHHHhhcCC
Confidence            35799999999999999999999999999988654211        112334554443322          222333  5


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccc----cCCceEEcC---CCCCCCHHHHHHHHHH
Q 020160          236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLF----ALDNVVLSP---HSAVFTPESFKDVCEL  308 (330)
Q Consensus       236 k~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~----~~~nvilTP---Hia~~t~~~~~~~~~~  308 (330)
                      .+++.+|=+.++.-.|...|..+|+. .....|+  ....- ....|+    ...+ |-+|   -|++-|++   .++-.
T Consensus       261 ~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~--iGSr~-R~~rl~~~g~~~~r-i~~PIGL~Iga~tP~---EIAvS  332 (362)
T 3on5_A          261 RPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGI--LGSKE-RTRRLLQNRKPPDH-LYSPVGLSIDAQGPE---EIAIS  332 (362)
T ss_dssp             CTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEE--SSCHH-HHHHHHTSCCCCTT-EESSCSCCSCCCSHH---HHHHH
T ss_pred             CCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEE--eCCHH-HHHHHHhcCCcHhh-eECCCCCCCCCCCHH---HHHHH
Confidence            67778888888888888888888876 3333333  11000 000011    1122 4455   36677765   55666


Q ss_pred             HHHHHHHHHcCC
Q 020160          309 AVANLEAFFSNK  320 (330)
Q Consensus       309 ~~~nl~~~~~g~  320 (330)
                      ++..|.+..+|+
T Consensus       333 I~AEiia~~~~~  344 (362)
T 3on5_A          333 IVAQLIQLIRSR  344 (362)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCC
Confidence            666677777665

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.02  E-value=0.012  Score=54.84  Aligned_cols=36  Identities=28%  Similarity=0.241  Sum_probs=33.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|++|.|+|.|.+|..+++.++.+|+ +|++.+++++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  203 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF  203 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            68999999999999999999999999 9999988653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.01  E-value=0.023  Score=53.33  Aligned_cols=85  Identities=31%  Similarity=0.335  Sum_probs=60.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------CCCCCC---CCCHH---HHhhcCCEEEEeccCCcccc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------SVTYPF---YPDVC---ELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~---~~~l~---ell~~aDvV~l~~P~t~~t~  224 (330)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++++      ..+...   +.+.+   ++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            5889999999999999999999999999988876543      222221   12222   223457888887753322  


Q ss_pred             ccccHHHHhcCCCCcEEEEcCC
Q 020160          225 HLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~r  246 (330)
                       +  ...++.++++..++.+|.
T Consensus       258 -~--~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 -L--EPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             -S--HHHHTTEEEEEEEEECSC
T ss_pred             -H--HHHHHHhccCCEEEEeCC
Confidence             1  456778899999998874

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.00  E-value=0.12  Score=46.24  Aligned_cols=37  Identities=19%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCC
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      ..+.||++.|.|. |.||+++|+.|...|++|+..+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            3589999999995 689999999999999999988876

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=94.98  E-value=0.035  Score=52.07  Aligned_cols=64  Identities=20%  Similarity=0.190  Sum_probs=43.5

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEEEE-CCCCCCC------CC------------------CCCCCCHHHHhhcCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYN-SRNKKPS------VT------------------YPFYPDVCELAANSDV  212 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~-~~~~~~~------~~------------------~~~~~~l~ell~~aDv  212 (330)
                      .+|||+|+|.||+.+++.+.. -++++.+. ++.+...      .+                  .....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999876 46777543 4432210      00                  0001256677889999


Q ss_pred             EEEeccCCcc
Q 020160          213 LIICCALTDQ  222 (330)
Q Consensus       213 V~l~~P~t~~  222 (330)
                      |+.|+|....
T Consensus        82 V~~atp~~~~   91 (337)
T 1cf2_P           82 VIDCTPEGIG   91 (337)
T ss_dssp             EEECCSTTHH
T ss_pred             EEECCCchhh
Confidence            9999986543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.96  E-value=0.16  Score=46.03  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=33.3

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCC
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      ..+.||++.|.|. |.||+++|+.|...|++|+..+++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3589999999995 799999999999999999988775

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.96  E-value=0.12  Score=50.01  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCC-----C--C---------CCCC------------CCCCCH
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNK-----K--P---------SVTY------------PFYPDV  203 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~-----~--~---------~~~~------------~~~~~l  203 (330)
                      |.++.|+++.|.|+|++|+.+|+.|..+|++|+. .|.+.     +  .         ..+.            ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            4568999999999999999999999999999984 44321     0  0         0010            111123


Q ss_pred             HHHh-hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          204 CELA-ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       204 ~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++++ ..||+++-|.     +.+.|+.+..+.++ -.+++--+-+.+- .+ -.+.|.+..|.
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~-a~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPTT-PE-AERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCBC-HH-HHHHHHTTTCE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcCC-HH-HHHHHHHCCCE
Confidence            4444 3688887765     33456666666664 3567777777753 33 34567666664

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=94.93  E-value=0.027  Score=49.51  Aligned_cols=93  Identities=16%  Similarity=0.177  Sum_probs=59.3

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCC--------CCCCCCHHHHhh---------cCCEEEEec
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT--------YPFYPDVCELAA---------NSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~ell~---------~aDvV~l~~  217 (330)
                      ..||++.|.| -|.||+++|+.|...|++|+..+|+......        .....+++++++         ..|+++.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A   84 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA   84 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence            5689999999 5799999999999999999998887654321        000112333433         678888775


Q ss_pred             cCCc-------cc----ccc----------ccHHHHhcCCCCcEEEEcCCCc
Q 020160          218 ALTD-------QT----HHL----------INKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       218 P~t~-------~t----~~l----------i~~~~l~~mk~gailIN~~rg~  248 (330)
                      -...       .+    +.+          +.+..++.|+++..+||+|...
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            4221       10    011          1133456676677899998743

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.93  E-value=0.036  Score=50.33  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=46.4

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +++|.|.| .|.||+.+++.|...|++|++.+|++....         ... ..++.++++.+|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 699999999999999999999988733211         112 34566788899999877654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.91  E-value=0.075  Score=47.60  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ..++.||++.|.|. |.||+++|++|...|++|+..+++...
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   47 (271)
T 3tzq_B            6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETD   47 (271)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            44689999999995 889999999999999999999887653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.87  E-value=0.047  Score=51.37  Aligned_cols=81  Identities=19%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEEE-CCCCCCC------C--------------------CCCCCCCHHHHhhcC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSYN-SRNKKPS------V--------------------TYPFYPDVCELAANS  210 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~-~~~~~~~------~--------------------~~~~~~~l~ell~~a  210 (330)
                      .+|||+|+|+||+.+++.+... +++|.+. +.++...      .                    ......+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            4899999999999999998765 5787654 3221100      0                    000111344556789


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEE
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                      |+|+.|+|.....+..   + -..++.|..+|.
T Consensus        83 DiV~eatg~~~s~~~a---~-~~~l~aG~~VI~  111 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQNL---E-NIYKPHKVKAIL  111 (343)
T ss_dssp             SEEEECCCTTHHHHHH---H-HTTTTTTCEEEE
T ss_pred             CEEEECCCccccHHHH---H-HHHHHCCCEEEE
Confidence            9999998754322211   1 245666765554

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.83  E-value=0.041  Score=50.00  Aligned_cols=64  Identities=23%  Similarity=0.237  Sum_probs=44.8

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CCCCCCCHHHHhhc--CCEEEEeccCC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TYPFYPDVCELAAN--SDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~ell~~--aDvV~l~~P~t  220 (330)
                      ..+++.|.| .|.||+.+++.|...|++|++.+|+.....        ......++.++++.  .|+|+.+....
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   85 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS   85 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence            457888998 599999999999999999999988754311        11111245566665  89988776543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.82  E-value=0.017  Score=51.74  Aligned_cols=61  Identities=16%  Similarity=0.066  Sum_probs=45.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----CCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .++|.|.|.|.||+.+++.|...|++|++.+|++...     .+..    -..+++  +.++|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            3799999999999999999999999999998876431     1111    112333  78899998877644

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.81  E-value=0.044  Score=50.51  Aligned_cols=87  Identities=20%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC-C--CCCCHHHHhhcCCEEEEec--c
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------TY-P--FYPDVCELAANSDVLIICC--A  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~~-~--~~~~l~ell~~aDvV~l~~--P  218 (330)
                      +||+|||.|.||+.+|-.|...+.  ++..+|.......             .. .  ...+-.+.++.||+|++..  |
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            589999999999999998876554  7888988653210             00 0  0112236789999999986  3


Q ss_pred             CCcc-ccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 020160          219 LTDQ-THH-LI--NK-------QVLLALGKKGVIINVG  245 (330)
Q Consensus       219 ~t~~-t~~-li--~~-------~~l~~mk~gailIN~~  245 (330)
                      ..|. ||. ++  |.       +.+..-.|.++++.++
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            3331 221 11  11       1233346778888774

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.78  E-value=0.03  Score=52.50  Aligned_cols=30  Identities=30%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhC---CCEEEEEC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF---GCCVSYNS  188 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~~  188 (330)
                      .+|||+|+|.||+.+.+.|...   .++|.+.+
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain   33 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            3799999999999999998654   57876543

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.77  E-value=0.026  Score=49.42  Aligned_cols=92  Identities=15%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCC--------CCCCCCHHHHhh---------cCCEEEEecc
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT--------YPFYPDVCELAA---------NSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~ell~---------~aDvV~l~~P  218 (330)
                      .||++.|.| -|.||+++|+.|...|++|+..+|+......        .....+++++++         ..|+|+.+.-
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   81 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG   81 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence            578999998 5899999999999999999998887654321        000112333333         6788887764


Q ss_pred             CCc-------cc----cccc----------cHHHHhcCCCCcEEEEcCCCc
Q 020160          219 LTD-------QT----HHLI----------NKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       219 ~t~-------~t----~~li----------~~~~l~~mk~gailIN~~rg~  248 (330)
                      ...       .+    +.++          .+..++.|+++..+||+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            221       11    0011          134556676677899998743

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.76  E-value=0.094  Score=46.96  Aligned_cols=50  Identities=24%  Similarity=0.382  Sum_probs=38.2

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhC-CCEEE-EECCCCCCCCCCCCCCCHHHHhh-cCCEEEEecc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAF-GCCVS-YNSRNKKPSVTYPFYPDVCELAA-NSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~~~~~~~~l~ell~-~aDvV~l~~P  218 (330)
                      ++|+|+|+ |+||+.+++.+... |+++. ++++.          .++++++. .+|+|+=+.+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------~dl~~~~~~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------DPLSLLTDGNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------CCTHHHHHTTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------CCHHHHhccCCcEEEEccC
Confidence            37999996 99999999998865 89886 45542          35667765 8998885553

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.75  E-value=0.045  Score=49.41  Aligned_cols=62  Identities=26%  Similarity=0.238  Sum_probs=46.8

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC--------------CCC-------CCCCCHHHHhhcCCEEEE
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS--------------VTY-------PFYPDVCELAANSDVLII  215 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~~-------~~~~~l~ell~~aDvV~l  215 (330)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|+....              .+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999996 9999999999999999999988874321              111       112346677889999988


Q ss_pred             eccC
Q 020160          216 CCAL  219 (330)
Q Consensus       216 ~~P~  219 (330)
                      +++.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            7764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.74  E-value=0.012  Score=52.66  Aligned_cols=90  Identities=13%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             eEEEEec-ChHHHHHHHHHHhC--CCEEEEECCCCCCCC-----CC-------CCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          160 RVGIVGL-GSIGSEVAKRLEAF--GCCVSYNSRNKKPSV-----TY-------PFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       160 ~vgIiG~-G~IG~~~A~~l~~~--G~~V~~~~~~~~~~~-----~~-------~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      +|.|.|. |.||+.+++.|...  |++|.+.+|++....     +.       ....++.++++.+|+|+.+........
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~   80 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQR   80 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHH
Confidence            4788996 99999999999988  999999888764321     11       112346677889999987665321110


Q ss_pred             ccccHHHHhcCCC-C-cEEEEcCCCcc
Q 020160          225 HLINKQVLLALGK-K-GVIINVGRGAI  249 (330)
Q Consensus       225 ~li~~~~l~~mk~-g-ailIN~~rg~~  249 (330)
                      -......++.++. + ..+|.+|....
T Consensus        81 ~~~~~~l~~a~~~~~~~~~v~~Ss~~~  107 (286)
T 2zcu_A           81 APQHRNVINAAKAAGVKFIAYTSLLHA  107 (286)
T ss_dssp             -CHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            0011223333322 2 36777776443

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.73  E-value=0.052  Score=50.18  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=46.3

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CCC-------CCCCHHHHhhc--CCEEEE
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TYP-------FYPDVCELAAN--SDVLII  215 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~~-------~~~~l~ell~~--aDvV~l  215 (330)
                      +.+++|.|.| .|.||+.+++.|...|++|++.+|+.....          ...       ...++.++++.  .|+|+.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   86 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   86 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence            5689999999 599999999999999999999988654321          110       11234556665  799887


Q ss_pred             ecc
Q 020160          216 CCA  218 (330)
Q Consensus       216 ~~P  218 (330)
                      +..
T Consensus        87 ~A~   89 (357)
T 1rkx_A           87 MAA   89 (357)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.72  E-value=0.082  Score=48.06  Aligned_cols=61  Identities=23%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC---------CCCC-------CCCCHHHHhhcCCEEEEecc
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS---------VTYP-------FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~-------~~~~l~ell~~aDvV~l~~P  218 (330)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|++...         .+..       ...++.++++.+|+|+.+++
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            358999995 9999999999999999999988876411         1111       11245566777887776654

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.71  E-value=0.15  Score=48.19  Aligned_cols=83  Identities=24%  Similarity=0.283  Sum_probs=55.1

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCC-----------CCCCC-CCCHHHHhhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPS-----------VTYPF-YPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~-----------~~~~~-~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -.+||||| .|.+|+++.+.|...- .++..........           ..... ..+.++++.++|++++|+|.... 
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~s-   91 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-   91 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHHH-
Confidence            35899998 7999999999998764 3665443221110           01111 12455666899999999996633 


Q ss_pred             cccccHHHHhcCCCCcEEEEcCCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~rg  247 (330)
                           .+....+ .|+.+|+.|.-
T Consensus        92 -----~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           92 -----YDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             -----HHHHTTC-CSCEEEESSST
T ss_pred             -----HHHHHHh-CCCEEEECChh
Confidence                 4455555 79999999853

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=94.71  E-value=0.085  Score=46.65  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +.||++.|.|. |.||+++|+.|...|++|+..+|+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            57899999996 89999999999999999999888754

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.69  E-value=0.052  Score=50.95  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEEEC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSYNS  188 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~  188 (330)
                      .+|||+|+|+||+.+++.+... +++|.+..
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            4899999999999999998765 57776443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.68  E-value=0.024  Score=50.67  Aligned_cols=62  Identities=16%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCC---------CCCCCCHHHHhhcCCEEEEecc
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT---------YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+|++.|.| .|.||+.+++.|...|++|+..+|+.....+         .....++.+++++.|+|+.+.-
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            468899999 6999999999999999999999887654321         1112346678889999987754

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.62  E-value=0.032  Score=51.77  Aligned_cols=61  Identities=16%  Similarity=0.216  Sum_probs=43.6

Q ss_pred             ceEEEEecChHHHHHHHHHHh--CCCEE-EEECCCCCC-C------CCCC-CCCCHHHHhh-----cCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA--FGCCV-SYNSRNKKP-S------VTYP-FYPDVCELAA-----NSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~--~G~~V-~~~~~~~~~-~------~~~~-~~~~l~ell~-----~aDvV~l~~P~  219 (330)
                      .+|||||+|.||+.+++.+..  -++++ .++++++.. .      .+.. ...+.+++++     +.|+|+.++|.
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~   81 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence            589999999999999999944  45665 467776554 1      1222 2356777764     47999999984

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.62  E-value=0.02  Score=53.89  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|++|.|+|.|.+|...++.++.+|++|++.++++.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            588999999999999999999999999999887643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.61  E-value=0.03  Score=54.47  Aligned_cols=109  Identities=16%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC---------CCCCCC--CCHHHHhhc-CCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS---------VTYPFY--PDVCELAAN-SDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~ell~~-aDvV~l~~P~t~~  222 (330)
                      ++.||++.|||+|..|.++|+.|+..|++|.++|......         .+....  ...++++.. +|+|+.+--..+.
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            4689999999999999999999999999999999865211         122111  123346666 8998876322221


Q ss_pred             cc----------ccccH-HHHhcCCCCcE-EEEcCCCcccCHHHHHHHHHcCC
Q 020160          223 TH----------HLINK-QVLLALGKKGV-IINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       223 t~----------~li~~-~~l~~mk~gai-lIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      ..          .++++ +.+..+.+..+ -|--+.|+.--..-+...|+...
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            11          13332 33333333333 34435687776666777777544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.60  E-value=0.036  Score=50.01  Aligned_cols=61  Identities=21%  Similarity=0.086  Sum_probs=46.7

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCC-CEEEEECCCCCCC-------CCC-------CCCCCHHHHhhcCCEEEEecc
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFG-CCVSYNSRNKKPS-------VTY-------PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G-~~V~~~~~~~~~~-------~~~-------~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .++|.|.|. |.||+.+++.|...| ++|.+.+|++...       .+.       ....++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999997 999999999999888 9999988876531       111       112346677889999998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.60  E-value=0.02  Score=53.29  Aligned_cols=85  Identities=26%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC---C-CC----C-CCCHHHHhh-----cCCEEEEeccCCc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV---T-YP----F-YPDVCELAA-----NSDVLIICCALTD  221 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~---~-~~----~-~~~l~ell~-----~aDvV~l~~P~t~  221 (330)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++..   . ..    + ..++.+.+.     ..|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68999999999999999999999999 9999987643210   0 10    0 112333222     4677766654211


Q ss_pred             cccccccHHHHhcCCCCcEEEEcCC
Q 020160          222 QTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       222 ~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      .   +  ...++.|+++..++.+|.
T Consensus       244 ~---~--~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 A---I--HQGLMALIPGGEARILGI  263 (343)
T ss_dssp             H---H--HHHHHHEEEEEEEEECCC
T ss_pred             H---H--HHHHHHHhcCCEEEEEec
Confidence            1   1  345666677777777654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.59  E-value=0.051  Score=50.93  Aligned_cols=66  Identities=23%  Similarity=0.202  Sum_probs=48.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCC-CEEEEECCCCCCC-------CCCC-------CCCCHHHHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFG-CCVSYNSRNKKPS-------VTYP-------FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G-~~V~~~~~~~~~~-------~~~~-------~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+.+++|.|.|. |.||+.+++.|...| ++|++.+|+....       ....       ...++.++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            478999999995 999999999999999 9999998875432       1110       01234556778999987765


Q ss_pred             CC
Q 020160          219 LT  220 (330)
Q Consensus       219 ~t  220 (330)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.59  E-value=0.0076  Score=57.45  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhC--CCEEE-EECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF--GCCVS-YNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      -.+|||||.| +|+.-++.++..  ++++. +++++.+..      .++..+.++++++++.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            4689999999 799888877665  57765 677766432      24555789999999999999999865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.59  E-value=0.087  Score=51.73  Aligned_cols=95  Identities=18%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             cccCCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCC--C--------------CCCCCCCHHHHh
Q 020160          154 SKLGGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPS--V--------------TYPFYPDVCELA  207 (330)
Q Consensus       154 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~--~--------------~~~~~~~l~ell  207 (330)
                      ..+.|++|+|+|+-          .=...+++.|...|.+|.+||+.....  .              ......++++.+
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHH
Confidence            35789999999974          356789999999999999999975321  0              123345788899


Q ss_pred             hcCCEEEEeccCCccccccccHH-HHhcCCCCcEEEEcCCCcccCHH
Q 020160          208 ANSDVLIICCALTDQTHHLINKQ-VLLALGKKGVIINVGRGAIIDEK  253 (330)
Q Consensus       208 ~~aDvV~l~~P~t~~t~~li~~~-~l~~mk~gailIN~~rg~~vd~~  253 (330)
                      +.+|+|++++... +.+. ++.+ ..+.|+ +.+++|+ |+ +.|.+
T Consensus       404 ~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          404 RDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             hCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            9999999988754 4443 3444 445566 4788886 54 45554

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.57  E-value=0.033  Score=52.58  Aligned_cols=37  Identities=30%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            35889999999999999999999998897 67777764

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=94.57  E-value=0.011  Score=57.44  Aligned_cols=65  Identities=20%  Similarity=0.298  Sum_probs=49.6

Q ss_pred             CceEEEEec----ChHHHHHHHHHHhC--CCEE-EEECCCCCCC------CCCC---CCCCHHHHhh--cCCEEEEeccC
Q 020160          158 GKRVGIVGL----GSIGSEVAKRLEAF--GCCV-SYNSRNKKPS------VTYP---FYPDVCELAA--NSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~----G~IG~~~A~~l~~~--G~~V-~~~~~~~~~~------~~~~---~~~~l~ell~--~aDvV~l~~P~  219 (330)
                      -.+|||||+    |.||+..++.++..  +++| .++|+++...      .+..   .+.+++++++  +.|+|++++|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999887  7776 4678765421      1222   4678999997  58999999985


Q ss_pred             Ccc
Q 020160          220 TDQ  222 (330)
Q Consensus       220 t~~  222 (330)
                      ...
T Consensus       100 ~~H  102 (438)
T 3btv_A          100 ASH  102 (438)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=94.51  E-value=0.14  Score=50.34  Aligned_cols=101  Identities=17%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---CC------------------CC---CCCCCHHHHh-hc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---SV------------------TY---PFYPDVCELA-AN  209 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~------------------~~---~~~~~l~ell-~~  209 (330)
                      ++.|+||.|-|+|++|+..|+.|...|.+|+.++.+...   ..                  ++   ....+  +++ ..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999999864332110   00                  00   00111  333 46


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ||+++=|.     +.+.|+.+....++ -.+++-.+-+. ...+| .+.|.+..|.
T Consensus       319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            89887654     44677777777776 45777888887 44444 4667776664

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=94.49  E-value=0.03  Score=54.73  Aligned_cols=107  Identities=22%  Similarity=0.245  Sum_probs=72.0

Q ss_pred             cCCceEEEEecC----hHHHHHHHHHHhCC-CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          156 LGGKRVGIVGLG----SIGSEVAKRLEAFG-CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       156 l~g~~vgIiG~G----~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++-++|.|||.+    ++|..+.+.++..| ..|..+++......+...+.++.|+....|++++++|.. .....+. +
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~~-~~~~~v~-e   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKR-FVKDTLI-Q   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHH-HHHHHHH-H
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCHH-HHHHHHH-H
Confidence            456899999998    89999999999884 788888876544445566788888888999999999854 3333332 2


Q ss_pred             HHhcCCCCcEEEEcC-CCcccC-----HHHHHHHHHcCCce
Q 020160          231 VLLALGKKGVIINVG-RGAIID-----EKEMVGCLLRGEIG  265 (330)
Q Consensus       231 ~l~~mk~gailIN~~-rg~~vd-----~~aL~~aL~~g~i~  265 (330)
                      ..+ .....+++..+ -.+.-+     ++++.+..++..+.
T Consensus        84 ~~~-~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           84 CGE-KGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHH-HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-cCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            332 23334444332 222223     66777777776554

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.48  E-value=0.044  Score=52.26  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC-----CCCHHHHh------hcCCEEEEeccC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF-----YPDVCELA------ANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~ell------~~aDvV~l~~P~  219 (330)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.     .+...     ..++.+.+      ...|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 899988765431     12110     12333222      148888887754


Q ss_pred             CccccccccHHHHhcC----CCCcEEEEcCC
Q 020160          220 TDQTHHLINKQVLLAL----GKKGVIINVGR  246 (330)
Q Consensus       220 t~~t~~li~~~~l~~m----k~gailIN~~r  246 (330)
                      ...+.    ...++.+    +++..++.+|-
T Consensus       293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            32221    2333444    88888888864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.48  E-value=0.039  Score=51.65  Aligned_cols=86  Identities=20%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCCC---CC-----CH-HHHh----hcCCEEEEec
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYPF---YP-----DV-CELA----ANSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~~---~~-----~l-~ell----~~aDvV~l~~  217 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++.+.     .+...   +.     ++ +++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 899888765431     12211   11     11 1222    2489999877


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .....   +  ...++.++++..++.+|-+
T Consensus       251 g~~~~---~--~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEAS---I--QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHHH---H--HHHHHHSCTTCEEEECSCC
T ss_pred             CChHH---H--HHHHHHhcCCCEEEEEecC
Confidence            53211   1  4567889999999998753

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=94.47  E-value=0.025  Score=47.98  Aligned_cols=60  Identities=20%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             Cc-eEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-CCCCCCCCHHHHhhc---CCEEEEecc
Q 020160          158 GK-RVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-VTYPFYPDVCELAAN---SDVLIICCA  218 (330)
Q Consensus       158 g~-~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-~~~~~~~~l~ell~~---aDvV~l~~P  218 (330)
                      || ++.|.| -|.||+.+++.|. .|++|+..+|+.... .......++++++++   .|+|+.+.-
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence            44 799998 5899999999999 999999988875411 111222345566665   798887754

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=94.47  E-value=0.072  Score=46.99  Aligned_cols=65  Identities=23%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCC-------CCCCCHHHHhh-------cCCEEEEeccC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-------PFYPDVCELAA-------NSDVLIICCAL  219 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-------~~~~~l~ell~-------~aDvV~l~~P~  219 (330)
                      .+.||++.|.| -|.||+++|+.|...|++|+..+|+.......       ....+++++++       ..|+++.+.-.
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~   91 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL   91 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            47899999999 58999999999999999999988876443211       11123334443       46999887643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.46  E-value=0.051  Score=49.27  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhc--CCEEEEeccC
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAAN--SDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~--aDvV~l~~P~  219 (330)
                      ||+|.|.|. |.||+.+++.|...|++|++.+|+.....    ......++.++++.  +|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            689999997 99999999999999999999987643210    11123456667765  8998877643

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.45  E-value=0.0094  Score=55.98  Aligned_cols=64  Identities=11%  Similarity=0.183  Sum_probs=45.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--------CCEE-EEECCCCCCCC------CC-CCCCCHHHHhhc--CCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--------GCCV-SYNSRNKKPSV------TY-PFYPDVCELAAN--SDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--------G~~V-~~~~~~~~~~~------~~-~~~~~l~ell~~--aDvV~l~~P~t  220 (330)
                      -+|||||+|.||+.-++.++..        +.+| .++|++++...      +. ..+.+++++++.  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4899999999999887776542        2355 46777754321      22 346789999965  79999999865


Q ss_pred             cc
Q 020160          221 DQ  222 (330)
Q Consensus       221 ~~  222 (330)
                      -+
T Consensus        87 ~H   88 (390)
T 4h3v_A           87 SH   88 (390)
T ss_dssp             GH
T ss_pred             HH
Confidence            44

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=94.45  E-value=0.042  Score=51.64  Aligned_cols=32  Identities=34%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEE-ECCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRN  190 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~  190 (330)
                      .+|||.|||+||+.+++++..+|++|.+ +|+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4899999999999999999999999876 5543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.43  E-value=0.054  Score=49.90  Aligned_cols=63  Identities=17%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC-------CCCCCCHHHHhhcCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT-------YPFYPDVCELAANSD  211 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~-------~~~~~~l~ell~~aD  211 (330)
                      +.+++|.|.| .|-||+.+++.|...|++|++.+|.....                ..       .....++.++++.+|
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            5689999999 59999999999999999999998865431                11       111224566778899


Q ss_pred             EEEEecc
Q 020160          212 VLIICCA  218 (330)
Q Consensus       212 vV~l~~P  218 (330)
                      +|+.+..
T Consensus       103 ~Vih~A~  109 (351)
T 3ruf_A          103 HVLHQAA  109 (351)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            8887664

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.43  E-value=0.052  Score=51.33  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEEECC-CCCC-----------C---C-CC---------------CC--CCCHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSYNSR-NKKP-----------S---V-TY---------------PF--YPDVC  204 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~-~~~~-----------~---~-~~---------------~~--~~~l~  204 (330)
                      .+|||+|+|.||+.+.+.|... .++|.+.+. ....           .   . +.               ..  ..+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999998765 678765543 2111           0   0 00               00  11344


Q ss_pred             HH-h--hcCCEEEEeccCCccccccccHHHHhcCCCCc--EEEEcCC
Q 020160          205 EL-A--ANSDVLIICCALTDQTHHLINKQVLLALGKKG--VIINVGR  246 (330)
Q Consensus       205 el-l--~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga--ilIN~~r  246 (330)
                      ++ .  ..+|+|+.|+|.....+     ..-..++.|+  ++|+.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s~e-----~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTTEE-----KASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHH-----HHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhhHH-----HHHHHHHcCCcEEEEeCCC
Confidence            43 2  57999999988653322     2223456788  8888764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.40  E-value=0.036  Score=48.21  Aligned_cols=63  Identities=17%  Similarity=0.071  Sum_probs=47.5

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhC--CCEEEEECCCCCCC----C-------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAF--GCCVSYNSRNKKPS----V-------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~--G~~V~~~~~~~~~~----~-------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .++++.|.| .|.||+.+++.|...  |++|+..+|++...    .       ......++.++++..|+|+.+...
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            578999999 699999999999998  89999988864320    0       111123566788899999987654

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.35  E-value=0.06  Score=49.48  Aligned_cols=66  Identities=24%  Similarity=0.129  Sum_probs=45.7

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-------CCC-------CCCCCHHHHhhc--CCEEEEe
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------VTY-------PFYPDVCELAAN--SDVLIIC  216 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~-------~~~~~l~ell~~--aDvV~l~  216 (330)
                      ..+.+++|.|.| .|.||+.+++.|...|++|++.+|+....       ...       ....+++++++.  +|+|+.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            357889999998 69999999999999999999988864321       011       011235566777  9988877


Q ss_pred             ccC
Q 020160          217 CAL  219 (330)
Q Consensus       217 ~P~  219 (330)
                      ...
T Consensus        97 A~~   99 (333)
T 2q1w_A           97 AAS   99 (333)
T ss_dssp             CCC
T ss_pred             cee
Confidence            653

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=94.35  E-value=0.075  Score=47.87  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      +|+||++-|-|. +.||+++|++|...|++|+..+|+...
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE   47 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh
Confidence            589999999995 579999999999999999998886543

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.33  E-value=0.038  Score=51.88  Aligned_cols=30  Identities=30%  Similarity=0.331  Sum_probs=24.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEEEC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSYNS  188 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~  188 (330)
                      .+|||+|+|.||+.+.+.|... .++|.+.+
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain   32 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEe
Confidence            3799999999999999998764 56776543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.33  E-value=0.016  Score=53.83  Aligned_cols=85  Identities=16%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCC-----CCCHHHHhh----cCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPF-----YPDVCELAA----NSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~-----~~~l~ell~----~aDvV~l~~P~t~~  222 (330)
                      .|++|.|+|.|.+|...++.++.+|.+|++.++++++.     .+...     ..++.+.+.    ..|+++.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            48899999999999999999999999999988765421     12110     123333222    46777766532211


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                         +  ...++.++++..++.++-
T Consensus       246 ---~--~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          246 ---F--SQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             ---H--HHHHHHEEEEEEEEECSC
T ss_pred             ---H--HHHHHHhccCCEEEEeCC
Confidence               1  356667778877777753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.33  E-value=0.08  Score=51.99  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=68.8

Q ss_pred             ccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCC---------C-------CCCCCCHHHHhh
Q 020160          155 KLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------T-------YPFYPDVCELAA  208 (330)
Q Consensus       155 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~-------~~~~~~l~ell~  208 (330)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+||+......         +       .....++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            478999999997          35678999999999999999999753210         0       122356788999


Q ss_pred             cCCEEEEeccCCccccccccHH-HHhcCCCCcEEEEcCCCcccCHHHH
Q 020160          209 NSDVLIICCALTDQTHHLINKQ-VLLALGKKGVIINVGRGAIIDEKEM  255 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~-~l~~mk~gailIN~~rg~~vd~~aL  255 (330)
                      .+|.|++++... +.+. ++.+ ..+.|+...+++++ |+ +.|.+.+
T Consensus       412 ~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            999999988754 4443 3443 44568776688885 54 4565543

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=94.28  E-value=0.052  Score=51.39  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=40.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--C--CEEE-EECCCCCC--CC--CCCCCCCHHHHhhcC-------------------
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--G--CCVS-YNSRNKKP--SV--TYPFYPDVCELAANS-------------------  210 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G--~~V~-~~~~~~~~--~~--~~~~~~~l~ell~~a-------------------  210 (330)
                      .+|||||+|.||+.+++.+...  |  ++|. ++++....  ..  +...+.++++++...                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            4799999999999999999875  3  5664 44543221  11  222235666666543                   


Q ss_pred             -CEEEEeccCC
Q 020160          211 -DVLIICCALT  220 (330)
Q Consensus       211 -DvV~l~~P~t  220 (330)
                       |+|+.|+|..
T Consensus        85 ~DvVV~~t~~~   95 (358)
T 1ebf_A           85 PVILVDNTSSA   95 (358)
T ss_dssp             CEEEEECSCCH
T ss_pred             CcEEEEcCCCh
Confidence             6788887754

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.22  E-value=0.069  Score=50.12  Aligned_cols=64  Identities=20%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------CCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY-------PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ..+++|.|.|. |.||+.+++.|...|++|++.+|+.....     ..       ....++.++++.+|+|+.+...
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            35789999997 99999999999999999999888754321     11       1112456778899999877643

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.17  E-value=0.052  Score=50.49  Aligned_cols=64  Identities=22%  Similarity=0.113  Sum_probs=47.0

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhC-CCEEEEECCCCCCCC------CC-------C-CCCCHHHHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAF-GCCVSYNSRNKKPSV------TY-------P-FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~------~~-------~-~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+.+++|.|.| .|-||+.+++.|... |++|++.+|+.....      +.       . ...++.++++++|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            36789999999 699999999999987 999999988765421      11       1 11235567889999987654

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=94.16  E-value=0.62  Score=43.97  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             cccCCceEEEEec--ChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEE
Q 020160          154 SKLGGKRVGIVGL--GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLII  215 (330)
Q Consensus       154 ~~l~g~~vgIiG~--G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l  215 (330)
                      ..+.|.+|++||=  +++.++.+..+..+|++|.+..+..-...              +  +....+++|.++++|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            3588999999995  48999999999999999998876432110              1  1235689999999999975


Q ss_pred             eccCC----cc---------ccccccHHHHhc-CCCCcEEEEcC
Q 020160          216 CCALT----DQ---------THHLINKQVLLA-LGKKGVIINVG  245 (330)
Q Consensus       216 ~~P~t----~~---------t~~li~~~~l~~-mk~gailIN~~  245 (330)
                      -.=..    ++         ...-++.+.++. .||+++|.-+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            32111    11         113467788876 47888888774

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.16  E-value=0.062  Score=46.87  Aligned_cols=61  Identities=20%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCC-----CCCHHHHhh----cCCEEEEeccC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPF-----YPDVCELAA----NSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~-----~~~l~ell~----~aDvV~l~~P~  219 (330)
                      |++.|.|. |.||+.+++.|...|++|++.+|+.........     ..+++++++    ..|+|+.+.-.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            47889986 999999999999999999999887643211110     123445554    78999877643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.15  E-value=0.052  Score=52.53  Aligned_cols=84  Identities=24%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             CCceEEEEecC----------hHHHHHHHHHHhCCCEEEEECCCCCCCC--------C--------CCCCCCHHHHhhcC
Q 020160          157 GGKRVGIVGLG----------SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------T--------YPFYPDVCELAANS  210 (330)
Q Consensus       157 ~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~--------~~~~~~l~ell~~a  210 (330)
                      .|++|+|+|+.          .-...+++.|...|.+|.+||+......        +        .....++.+.++.+
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS  391 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence            68999999997          6678999999999999999998532111        0        12346788899999


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      |+|++++.. ++.+.+ +   .+.|+ +.+++|+ |+
T Consensus       392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~-r~  421 (436)
T 1mv8_A          392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL-VG  421 (436)
T ss_dssp             SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES-SS
T ss_pred             cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC-CC
Confidence            999998865 344332 1   34565 5788886 44

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.14  E-value=0.057  Score=49.92  Aligned_cols=65  Identities=22%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCC-------CCCCCHHHHhhcC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTY-------PFYPDVCELAANS  210 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~-------~~~~~l~ell~~a  210 (330)
                      ++.+++|.|.|. |.||+.+++.|...|++|++.+|+....                ...       ....++.++++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            467899999997 9999999999999999999988865310                111       1112456678889


Q ss_pred             CEEEEeccC
Q 020160          211 DVLIICCAL  219 (330)
Q Consensus       211 DvV~l~~P~  219 (330)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            988877654

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.14  E-value=0.089  Score=51.22  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEE-EECC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSR  189 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~  189 (330)
                      +.++.|+|+.|-|+|++|+..|+.|...|.+|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            557899999999999999999999999999986 4443

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.13  E-value=0.16  Score=45.85  Aligned_cols=38  Identities=34%  Similarity=0.426  Sum_probs=34.3

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++.||++.|.|. |.||+++|++|...|++|+..+|+..
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            578999999995 78999999999999999999888765

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.12  E-value=0.025  Score=52.13  Aligned_cols=106  Identities=18%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCC--EEEEECC--CCCCCCC--------------CCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGC--CVSYNSR--NKKPSVT--------------YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~--~~~~~~~--------------~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++|+|+| .|.+|+.++..|...|.  ++..+|+  ......+              .....+..+.++.||+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999987675  6777887  4321100              00000125678999999998754


Q ss_pred             Ccccccc-----c--c----H---HHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEE
Q 020160          220 TDQTHHL-----I--N----K---QVLLALGKKGVIINVGRGAIIDEKE--MVGC--LLRGEIGGA  267 (330)
Q Consensus       220 t~~t~~l-----i--~----~---~~l~~mk~gailIN~~rg~~vd~~a--L~~a--L~~g~i~ga  267 (330)
                      ... .++     +  |    .   +.+....|.+++++++  ..+|.-.  +.+.  +...++.|.
T Consensus        81 ~~~-~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S--NPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           81 PRQ-PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS--NPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             CCC-TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC--SSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHHHHcCCCHHHeeec
Confidence            321 111     0  0    1   2233346789999874  4444333  2232  333356555

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.11  E-value=0.032  Score=51.99  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++.+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~  195 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA  195 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5899999998 99999999999999999998887654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.09  E-value=0.011  Score=57.97  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=46.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCC-------CCCCCHHHH-hhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTY-------PFYPDVCEL-AANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~-------~~~~~l~el-l~~aDvV~l~~P~t  220 (330)
                      .++|-|+|+|++|+.+|+.|...|++|++.|.+++..      .+.       .....|.+. +++||+++.+++..
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            5789999999999999999999999999998875421      111       111224443 68899988766543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.09  E-value=0.071  Score=51.56  Aligned_cols=107  Identities=15%  Similarity=0.094  Sum_probs=66.7

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCC--CCHHHHhhcCCEEEEeccCC---cccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFY--PDVCELAANSDVLIICCALT---DQTH  224 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~--~~l~ell~~aDvV~l~~P~t---~~t~  224 (330)
                      +.||+|.|||+|..|.+.|+.|+..|++|.++|.+....      .+....  ....+.+..+|.|++.-...   |...
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhhCCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHH
Confidence            578999999999999999999999999999998764332      122111  11245566899988863222   2111


Q ss_pred             -------ccccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          225 -------HLINKQ-VL-LALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       225 -------~li~~~-~l-~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                             .++..- .+ ..++...+-|--+.|+---..-+...|++.
T Consensus        83 ~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           83 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             HHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence                   123321 12 224444555555667776666666777654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.07  E-value=0.023  Score=52.62  Aligned_cols=84  Identities=21%  Similarity=0.282  Sum_probs=53.5

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----C-C-CCHHHHhh-----cCCEEEEeccC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----F-Y-PDVCELAA-----NSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~-~-~~l~ell~-----~aDvV~l~~P~  219 (330)
                      .|+++.|.|. |.||..+++.++..|++|++.+++.+..     .+..    . . .++.+.+.     ..|+++.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5899999998 9999999999999999999888754321     1110    0 0 23333222     35666665532


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCC
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                       +   .+  ...++.+++++.++.+|-
T Consensus       225 -~---~~--~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 -E---FL--NTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             -H---HH--HHHHTTEEEEEEEEECCC
T ss_pred             -H---HH--HHHHHHHhcCCEEEEEec
Confidence             1   11  455666777777777653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.02  E-value=0.035  Score=52.42  Aligned_cols=85  Identities=28%  Similarity=0.351  Sum_probs=56.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCC----C-CCCHHHHhh--------cCCEEEEec
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYP----F-YPDVCELAA--------NSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~----~-~~~l~ell~--------~aDvV~l~~  217 (330)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++++..     .+..    + ..++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            47899999999999999999999999 898888765431     1211    0 123433333        367777665


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ... .+  +  ...++.+++++.++.+|-
T Consensus       262 G~~-~~--~--~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVA-ET--V--KQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCH-HH--H--HHHHHHEEEEEEEEECSC
T ss_pred             CCH-HH--H--HHHHHHhccCCEEEEEec
Confidence            321 11  1  456667778888777764

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=93.98  E-value=0.047  Score=51.28  Aligned_cols=84  Identities=18%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHHh-CCCEEEEE-CCCC--CCCC----------CC-C-CCC---CHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEA-FGCCVSYN-SRNK--KPSV----------TY-P-FYP---DVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~~-~~~~--~~~~----------~~-~-~~~---~l~ell~~aDvV~l~~P  218 (330)
                      .+|+|+| .|.+|+.+.+.|.. -++++... +++.  ....          +. . ...   +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 69999999999987 45577544 3331  1100          11 0 011   34455589999999998


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .....+ +. ..   ..+.|+.+|+.|.-
T Consensus        85 ~~~s~~-~~-~~---~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEVSHD-LA-PQ---FLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHHHHH-HH-HH---HHHTTCEEEECSST
T ss_pred             hHHHHH-HH-HH---HHHCCCEEEEcCCc
Confidence            543222 21 12   24678999998754

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.95  E-value=0.067  Score=49.89  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=44.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCC-EEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|.|.| .|.||+.+++.|...|. +|+..|++.       ...++.++++++|+|+.+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~-------d~~~l~~~~~~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQT-------KEEELESALLKADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTC-------CHHHHHHHHHHCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCC-------CHHHHHHHhccCCEEEECCc
Confidence            5799999 79999999999999998 999998851       12467888999999987664

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.94  E-value=0.032  Score=50.93  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=37.3

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +|...++.|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         5 lpl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            345567999999999999999999999999999999988754

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.93  E-value=0.17  Score=47.29  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=35.8

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ...+.||++.|.|. |.||+++|++|...|++|+..+|+...
T Consensus        40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            34689999999995 799999999999999999998887653

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=93.93  E-value=0.059  Score=50.51  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=24.5

Q ss_pred             ceEEEEecChHHHHHHHHHHh-CCCEEEEEC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA-FGCCVSYNS  188 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~  188 (330)
                      .+|||+|+|+||+.+++.+.. -+++|.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            489999999999999999864 467876543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.91  E-value=0.038  Score=49.05  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=46.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--C-------CCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--T-------YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~-------~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      |++.|.|. |.||+.+++.|...|++|++.+|++....  +       .....++.++++..|+|+.+...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            68999997 99999999999999999999998764321  1       11122456778899999887654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.91  E-value=0.015  Score=54.12  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----CCCCC----CC---CHHHH-hhcCCEEEEeccCCccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPF----YP---DVCEL-AANSDVLIICCALTDQTHH  225 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~----~~---~l~el-l~~aDvV~l~~P~t~~t~~  225 (330)
                      .+++.|+|+|.+|+.+++.|...|. |++.+++++..    .+...    ..   .+++. ++++|.++++++..+.+  
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n--  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET--  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHH--
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHH--
Confidence            5689999999999999999999999 99998876421    11110    11   23333 67899999988754333  


Q ss_pred             cccHHHHhcCCCCcEEE
Q 020160          226 LINKQVLLALGKKGVII  242 (330)
Q Consensus       226 li~~~~l~~mk~gailI  242 (330)
                      +.-...++.+.+...+|
T Consensus       192 ~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          192 IHCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHHCCCCeEE
Confidence            33355666677764433

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.89  E-value=0.083  Score=45.79  Aligned_cols=61  Identities=16%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCCCCCHHHHhh------cCCEEEEecc
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPFYPDVCELAA------NSDVLIICCA  218 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~ell~------~aDvV~l~~P  218 (330)
                      ||++.|.| -|.||+.+|+.|...|++|+..+|+.....      ......+++++++      ..|+++.+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            68899998 589999999999999999999888765111      1111224455555      5688877653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.88  E-value=0.058  Score=49.08  Aligned_cols=62  Identities=16%  Similarity=0.136  Sum_probs=46.6

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC-CC-------------CCCC-------CCCCCHHHHhhcCCEEEE
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK-KP-------------SVTY-------PFYPDVCELAANSDVLII  215 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~-~~-------------~~~~-------~~~~~l~ell~~aDvV~l  215 (330)
                      .++|.|.|. |.||+.+++.|...|++|.+.+|++ ..             ..+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999995 9999999999999999999988875 11             0111       112356678899999988


Q ss_pred             eccC
Q 020160          216 CCAL  219 (330)
Q Consensus       216 ~~P~  219 (330)
                      ++..
T Consensus        84 ~a~~   87 (321)
T 3c1o_A           84 ALPF   87 (321)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            7754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=93.88  E-value=0.14  Score=46.27  Aligned_cols=60  Identities=18%  Similarity=0.149  Sum_probs=43.9

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECC-CCCC---C------C-----------CCCCCCCHHHHhhcCCEEEE
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSR-NKKP---S------V-----------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~-~~~~---~------~-----------~~~~~~~l~ell~~aDvV~l  215 (330)
                      ||+|.|.| .|.||+.+++.|...|++|.+..| ++..   .      .           ......+++++++.+|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            68899999 699999999999999999998776 4321   0      0           01112356778889999887


Q ss_pred             ec
Q 020160          216 CC  217 (330)
Q Consensus       216 ~~  217 (330)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.87  E-value=0.031  Score=54.52  Aligned_cols=103  Identities=15%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             CceEEEEecChHHHHHHHHHHh----------CCCEEE-EECCCCCCC----CCCCCCCCHHHHhh--cCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA----------FGCCVS-YNSRNKKPS----VTYPFYPDVCELAA--NSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~----------~G~~V~-~~~~~~~~~----~~~~~~~~l~ell~--~aDvV~l~~P~t  220 (330)
                      -.+|||||+|.||+.+++.+..          .+.+|. ++++++...    .+...+.++++++.  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3589999999999999987653          456664 556654321    12334578999986  479999999853


Q ss_pred             -ccccccccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCce
Q 020160          221 -DQTHHLINKQVLLALGKKGVIINVGRGAII-DEKEMVGCLLRGEIG  265 (330)
Q Consensus       221 -~~t~~li~~~~l~~mk~gailIN~~rg~~v-d~~aL~~aL~~g~i~  265 (330)
                       .+..     -....++.|.-++-.--+-.. +-++|.++.++....
T Consensus        90 ~~h~~-----~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPARE-----LVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHH-----HHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHH-----HHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence             2222     123455666655543222222 235677777665553

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=93.85  E-value=0.055  Score=48.40  Aligned_cols=38  Identities=29%  Similarity=0.357  Sum_probs=33.7

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++.||++.|.| .|.||+.+|+.|...|++|+..+++..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999998 679999999999999999998888654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=93.85  E-value=0.18  Score=46.09  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC------------C-------CCCCCCCHHHHhhcCCEEEEec
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS------------V-------TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~-------~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +|+|.|.| .|-||+.+++.|...|++|.+..|+....            .       ......+++++++.+|+|+.+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            78999999 79999999999999999998766654321            0       1111345678888999888654

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.85  E-value=0.084  Score=49.30  Aligned_cols=57  Identities=23%  Similarity=0.268  Sum_probs=41.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-CC-------CCCCC---HHHHhhcCCEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TY-------PFYPD---VCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~-------~~~~~---l~ell~~aDvV~l  215 (330)
                      |||+|+|-|..|..+++.++.+|++|++.|.++.... ..       ....+   +.++.+.+|.|+.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~   69 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLP   69 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEE
Confidence            7999999999999999999999999999887665321 10       01122   3345678898764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=93.84  E-value=0.11  Score=48.24  Aligned_cols=35  Identities=31%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|++.|.| .|.||+.+++.|...|++|++.+|+..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            47899999 599999999999999999999988653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.83  E-value=0.079  Score=48.45  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=44.5

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------CCCCCHHHHhhcCCEEEEeccC
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY-------PFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .++|.|.| .|.||+.+++.|...|++|++.+|++....     +.       ....++.++++.+|+|+.+...
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            35899999 599999999999999999999988764321     11       1112456678889998877653

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=93.83  E-value=0.077  Score=49.26  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHh--CCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEA--FGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~--~G~~V~~~~~~~~  192 (330)
                      .++.+++|.|.| .|-||+.+++.|..  .|++|++.+|...
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            357899999997 59999999999999  9999999988554

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.79  E-value=0.025  Score=52.72  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhC--CCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.+++++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~  207 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKK  207 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            588999999999999999999999  999999987653

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.77  E-value=0.088  Score=47.71  Aligned_cols=62  Identities=23%  Similarity=0.213  Sum_probs=46.9

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhh--cCCEEEEeccCC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAA--NSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~~P~t  220 (330)
                      .+++|.|.| .|.||+.+++.|...|++|++.+++...  ......++.++++  .+|+|+.+....
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL--NLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC--CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC--CccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            368999999 5999999999999999999988775422  1222345667787  899998776543

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=93.77  E-value=0.041  Score=51.16  Aligned_cols=62  Identities=13%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEE-EECCCCC-CCC---------C--CCCCCCHHHHhhc--CCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVS-YNSRNKK-PSV---------T--YPFYPDVCELAAN--SDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~-~~~---------~--~~~~~~l~ell~~--aDvV~l~~P~t~  221 (330)
                      .++||||+|.+|+..++.+ .-+++|. ++|+++. ...         +  ...+.+++++++.  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~   79 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL   79 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence            5899999999999777766 5577775 5777652 210         2  2346799999975  899999988543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.76  E-value=0.19  Score=44.99  Aligned_cols=92  Identities=24%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC----------CC---------CCCCCCHHHHhh------
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS----------VT---------YPFYPDVCELAA------  208 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~---------~~~~~~l~ell~------  208 (330)
                      ++.||++.|.|. |.||+++|+.|...|++|+..+++....          .+         .....+++++++      
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            589999999995 7899999999999999998775443110          01         111123344444      


Q ss_pred             -cCCEEEEeccCCcc------c----ccc----------ccHHHHhcCCCCcEEEEcCC
Q 020160          209 -NSDVLIICCALTDQ------T----HHL----------INKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       209 -~aDvV~l~~P~t~~------t----~~l----------i~~~~l~~mk~gailIN~~r  246 (330)
                       ..|+++.+.-....      +    +.+          +.+..++.|+++..+||++.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence             68999887543211      0    111          12445677888889999976

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=93.75  E-value=0.053  Score=50.94  Aligned_cols=29  Identities=28%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhC---CCEEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF---GCCVSYN  187 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~  187 (330)
                      .+|||+|+|+||+.+.+.|...   +++|.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaI   34 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAI   34 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            3899999999999999998765   3777654

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.73  E-value=0.12  Score=46.51  Aligned_cols=63  Identities=22%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC-------------CCCC-------CCCCCHHHHhhcCCEEEEe
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP-------------SVTY-------PFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~~~-------~~~~~l~ell~~aDvV~l~  216 (330)
                      .++|.|.| .|.||+.+++.|...|++|.+.+|+...             ..+.       ....++.++++.+|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            47899999 4999999999999999999999887431             1111       1123466778899999887


Q ss_pred             ccCC
Q 020160          217 CALT  220 (330)
Q Consensus       217 ~P~t  220 (330)
                      +...
T Consensus        84 a~~~   87 (313)
T 1qyd_A           84 LAGG   87 (313)
T ss_dssp             CCCS
T ss_pred             Cccc
Confidence            7644

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.72  E-value=0.035  Score=54.06  Aligned_cols=102  Identities=14%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCCC-------C----------------------CCCCCCHHHHh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV-------T----------------------YPFYPDVCELA  207 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~-------~----------------------~~~~~~l~ell  207 (330)
                      .+|||||+|.||+.+++.+... |++|. ++|++++...       +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999888754 67764 6677653210       1                      12357899999


Q ss_pred             h--cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCc
Q 020160          208 A--NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGA-IIDEKEMVGCLLRGEI  264 (330)
Q Consensus       208 ~--~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~-~vd~~aL~~aL~~g~i  264 (330)
                      +  ..|+|++++|... . |.  +-.+..++.|.-++...-+- ..+-+.|.++-++..+
T Consensus       104 ~d~dIDaVviaTp~p~-~-H~--e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gv  159 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-V-GA--ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGV  159 (446)
T ss_dssp             TCTTCCEEEECSCCHH-H-HH--HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCEEEEcCCChH-H-HH--HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCC
Confidence            7  4899999987542 1 11  23444556665555321111 1223456666655444

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.70  E-value=0.033  Score=51.98  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            48899999999999999999999999 7999887653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.69  E-value=0.098  Score=46.74  Aligned_cols=96  Identities=21%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC------------C-------CCCCCCCHHHHhh----
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS------------V-------TYPFYPDVCELAA----  208 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~-------~~~~~~~l~ell~----  208 (330)
                      ..++.||++.|.|. |.||+++|++|...|++|+..+++....            .       ......+++++++    
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            34689999999995 6899999999999999998865432210            0       1111123334443    


Q ss_pred             ---cCCEEEEeccCCcc------c----cc----------cccHHHHhcCCCCcEEEEcCCCc
Q 020160          209 ---NSDVLIICCALTDQ------T----HH----------LINKQVLLALGKKGVIINVGRGA  248 (330)
Q Consensus       209 ---~aDvV~l~~P~t~~------t----~~----------li~~~~l~~mk~gailIN~~rg~  248 (330)
                         .-|+++.+.-....      +    +.          .+.+..++.|+++..+||++...
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence               57998876543211      0    01          11245677888888999998744

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=93.67  E-value=0.036  Score=51.98  Aligned_cols=83  Identities=12%  Similarity=0.021  Sum_probs=49.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhC---CCEEEEEC-CCCC-CCC---CCC-CCCCHH-HHhhcCCEEEEeccCCccccccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAF---GCCVSYNS-RNKK-PSV---TYP-FYPDVC-ELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~---G~~V~~~~-~~~~-~~~---~~~-~~~~l~-ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      .+|||+| .|.+|+.+.+.|...   .+++.+.. ++.. ...   +.. ...+++ +.+..+|+|+.|+|.....+ ..
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~-~a   82 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK-WA   82 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH-HH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH-HH
Confidence            6899999 999999999998865   34665543 3221 100   100 011111 23468999999998653222 11


Q ss_pred             cHHHHhcCCCCcEEEEcCC
Q 020160          228 NKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~r  246 (330)
                       ..   .++.|+.+|+.+.
T Consensus        83 -~~---~~~~G~~vId~s~   97 (336)
T 2r00_A           83 -PI---AAEAGVVVIDNTS   97 (336)
T ss_dssp             -HH---HHHTTCEEEECSS
T ss_pred             -HH---HHHcCCEEEEcCC
Confidence             11   2345778887763

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=93.61  E-value=0.14  Score=49.94  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=31.4

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEE
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSY  186 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~  186 (330)
                      |.++.|+|+.|-|+|++|+..|+.|...|.+|+.
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVa  280 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT  280 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            5578999999999999999999999999999873

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.58  E-value=0.043  Score=51.81  Aligned_cols=64  Identities=11%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             ceEEEEe-cChHHHH-HH----HHHHhCC-CEE----------EEECCCCCCC------CCC-CCCCCHHHHhhc--CCE
Q 020160          159 KRVGIVG-LGSIGSE-VA----KRLEAFG-CCV----------SYNSRNKKPS------VTY-PFYPDVCELAAN--SDV  212 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~-~A----~~l~~~G-~~V----------~~~~~~~~~~------~~~-~~~~~l~ell~~--aDv  212 (330)
                      .+||||| +|.||+. .+    +.++..+ ..+          .++++++...      .+. ..+.+++++++.  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            5899999 9999998 66    6665443 232          3788876532      133 246799999976  899


Q ss_pred             EEEeccCCcc
Q 020160          213 LIICCALTDQ  222 (330)
Q Consensus       213 V~l~~P~t~~  222 (330)
                      |++++|...+
T Consensus        87 V~i~tp~~~h   96 (383)
T 3oqb_A           87 FFDAATTQAR   96 (383)
T ss_dssp             EEECSCSSSS
T ss_pred             EEECCCchHH
Confidence            9999986544

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.53  E-value=0.15  Score=47.20  Aligned_cols=96  Identities=19%  Similarity=0.252  Sum_probs=61.6

Q ss_pred             ceEEEEe-cChHHHHHHHHHHh---CCCEEEEECCCCCC--------CCCC--CCC----CCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEA---FGCCVSYNSRNKKP--------SVTY--PFY----PDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~---~G~~V~~~~~~~~~--------~~~~--~~~----~~l~ell~~aDvV~l~~P~t  220 (330)
                      ++|+||| .|.+|..+|..|..   +.-++..+|..+..        ....  ...    .+..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            5899999 89999999999864   44588899886521        0011  011    24567899999999987533


Q ss_pred             cc---cc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020160          221 DQ---TH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDEKEMV  256 (330)
Q Consensus       221 ~~---t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~~aL~  256 (330)
                      ..   +| .++  |       .+.+....|.+++++++  ..+|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            21   22 122  1       11233346889999995  667665554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.50  E-value=0.034  Score=51.69  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=33.1

Q ss_pred             CCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          157 GGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .|++|.|+|.| .||..+++.++.+|++|++.+++.+.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~  181 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKH  181 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            58899999998 99999999999999999998876653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.42  E-value=0.083  Score=47.52  Aligned_cols=38  Identities=26%  Similarity=0.421  Sum_probs=33.5

Q ss_pred             cccCCceEEEEec-Ch--HHHHHHHHHHhCCCEEEEECCCC
Q 020160          154 SKLGGKRVGIVGL-GS--IGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|+..+++.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4689999999996 44  99999999999999999988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	6e-37
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	1e-32
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-32
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	2e-31
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	2e-30
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	5e-21
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	1e-20
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	6e-20
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-16
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	3e-12
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	2e-11
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-09
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	2e-09
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	3e-08
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	3e-08
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	3e-08
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	7e-08
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	1e-06
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	5e-06
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	6e-06
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	7e-06
d1lssa_	132	c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus ja	0.001
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	0.001
d2g5ca2	171	c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {	0.002
d1f06a1	170	c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid de	0.002
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	0.003
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	0.003
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	0.003
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.004

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  129 bits (324), Expect = 6e-37
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWP-INAEFPLGSKLGGKRVGIVGLGSIGSE 172
           +   A+ A+ LL+   R+    +  +R   WP       +G KL  K +GI G GSIG  
Sbjct: 2   TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61

Query: 173 VAKRLEAFGCCVSYNSRNKKPSVTYP-----FYPDVCELAANSDVLIICCALTDQTHHLI 227
           +AKR + F   + Y   ++  S         F+  +  L + S    +    T +T +  
Sbjct: 62  LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121

Query: 228 NKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDN 287
           NK  + +L +  +++N  RG ++D + +V  L  G +  AG DVF  EP++ E  + L N
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 181

Query: 288 VVLSPH 293
             L PH
Sbjct: 182 TFLFPH 187

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  117 bits (294), Expect = 1e-32
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 6/185 (3%)

Query: 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKR 176
           VA++ + +++ ++R    +  + R+G W I         L    VG V  G IG  V +R
Sbjct: 3   VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62

Query: 177 LEAFGCCVSYNSRNKKPSVTYPFYPDVC-----ELAANSDVLIICCALTDQTHHLINKQV 231
           L  F   + Y  R++ P                ++    DV+ + C L  +T H+IN + 
Sbjct: 63  LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122

Query: 232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-LFALDNVVL 290
           L    +   I+N  RG + D   +   L  G + G   DV+  +P   +     +    +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182

Query: 291 SPHSA 295
           +PH +
Sbjct: 183 TPHIS 187

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 5/180 (2%)

Query: 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKR 176
            A++AL LL+   R++ AAD  +R+  W  ++         GK VG+VGLG IG  VA+R
Sbjct: 5   AAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQR 62

Query: 177 LEAFGCCVSYNSRNKKPSVTYPFYPDVC---ELAANSDVLIICCALTDQTHHLINKQVLL 233
           + AFG  V        P+       ++    +L A +D + +    T +T  LI+K+ L 
Sbjct: 63  IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 122

Query: 234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPH 293
                 +I+N  RG ++DE  +   +  G +  AGLDVF  EP     LF L  VV++PH
Sbjct: 123 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 182

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  114 bits (286), Expect = 2e-31
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE-----FPLGSKLGGKRVGIVGLGSI 169
           E+ AD  L  ++++ R+ +     +R+G    + E         +++ G+ +GI+GLG +
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 170 GSEVAKRLEAFGCCVSYNSRNKKPSVTYPF----YPDVCELAANSDVLIICCALTDQTHH 225
           G  VA R +AFG  V +        V           + +L  +SD + + C L +  HH
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 226 LINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ--LF 283
           LIN   +  + +   ++N  RG ++DEK +   L  G I GA LDV E+EP    Q  L 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 284 ALDNVVLSPHSA 295
              N++ +PH+A
Sbjct: 181 DAPNLICTPHAA 192

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (279), Expect = 2e-30
 Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 8/188 (4%)

Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEV 173
           +  VA+  +G L+ +LR +  A+    +G+    A     ++  GK++GI+G G IG+++
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEAR--GKKLGIIGYGHIGTQL 59

Query: 174 AKRLEAFGCCVSYNSRNK-KPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL 232
               E+ G  V +       P         + +L   SDV+ +       T +++  + +
Sbjct: 60  GILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEI 119

Query: 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ-----LFALDN 287
             +    ++IN  RG ++D   +   L    + GA +DVF  EP          L   DN
Sbjct: 120 SLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDN 179

Query: 288 VVLSPHSA 295
           V+L+PH  
Sbjct: 180 VLLTPHIG 187

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 86.4 bits (212), Expect = 5e-21
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVA 174
           + VA++AL LL+   +++      +++G +  + E PL     G++V ++GLG IG+ V 
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQ---GEKVAVLGLGEIGTRVG 58

Query: 175 KRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA 234
           K L A G  V   SR  K    + F   + E    +   +    L   T  L+  Q L  
Sbjct: 59  KILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL 117

Query: 235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE--QLFALDNVVLSP 292
           + +  V +NVGR  ++D   ++  L          DV+    D  +  + F+L NVV +P
Sbjct: 118 MAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATP 177

Query: 293 HSA 295
             A
Sbjct: 178 WVA 180

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 86.0 bits (211), Expect = 1e-20
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 16/199 (8%)

Query: 114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEV 173
              +A++AL   + +LR +      ++ G +     F +G +LG + VG++G G IG   
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVA 60

Query: 174 AKRLEAFGCCVSYNSRNKKPSVTYPFYPD-VCELAANSDVLIICCALTDQTHHLINKQVL 232
            K  + FG  V              F    + +L   SDV+ +     +Q  H+IN+   
Sbjct: 61  IKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAF 120

Query: 233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEP--------------DV 278
             +    ++IN  R  +ID + M+  L  G++ G G+D +E E                +
Sbjct: 121 NLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPL 180

Query: 279 PEQLFALDNVVLSPHSAVF 297
            ++L  + NVVLSPH A +
Sbjct: 181 WDELLGMPNVVLSPHIAYY 199

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 84.1 bits (206), Expect = 6e-20
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 18/195 (9%)

Query: 117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKR 176
           +A++A      +LR+  A D  V +          +G ++  + VG+VG G IG    + 
Sbjct: 4   IAEHAAIQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQI 61

Query: 177 LEAFGCCVSYNSRNKKPSVTYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQVLLA 234
           +E FG  V      + P +    Y           +DV+ +         H+IN + +  
Sbjct: 62  MEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121

Query: 235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQ------------- 281
           + +  VI+NV RG ++D   ++  L  G+I G  +DV+E E  +  +             
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181

Query: 282 -LFALDNVVLSPHSA 295
            L A  NV+++P +A
Sbjct: 182 DLIARPNVLVTPKTA 196

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 71.6 bits (175), Expect = 3e-16
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 30/132 (22%)

Query: 50  EFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANA 109
            F  +    +  + ++  + +TAE L  +P ++ +   +AGL+H+           +A  
Sbjct: 20  YFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPHVT-VAGN 78

Query: 110 GNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSI 169
                         ++++ +R L                                  G  
Sbjct: 79  AGSNGYGNERVWRQMVMEAVRNL-----------------------------ITYATGGR 109

Query: 170 GSEVAKRLEAFG 181
              +AKR +  G
Sbjct: 110 PRNIAKREDYIG 121

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 30/159 (18%)

Query: 16  LLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSV---------------- 59
           +   P G  +   +       Q L +    L L ++L  + H++                
Sbjct: 27  IDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERE 86

Query: 60  --KAIF----SSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVF 113
              A          A +T E +     ++L +    G +H+D+     R V +A      
Sbjct: 87  LVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCN 146

Query: 114 SEDVADYALGLLIDVL--------RKLSAADCFVRQGLW 144
           S  +   A                R +      V+ G  
Sbjct: 147 STTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
           P VL+  K  PS  A LG+Q            +       + L        A+   +   
Sbjct: 3   PVVLIADKLAPSTVAALGDQVEVR--------WVDGPDRDKLLA-AVPEADALLVRSATT 53

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           V AE+L   P++++V     GL+++DV     RGV + NA    S   A    G  +   
Sbjct: 54  VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAES 113

Query: 130 RKLSAADCFVRQGLW 144
            +L+ A  FV   + 
Sbjct: 114 VRLALAGEFVPDAVN 128

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 11/129 (8%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPL-HEFLTLHAHSVKAIFSSAGA 68
            ++L+      +  A   E +        + A+     +  + +   A SV A+  +   
Sbjct: 2   KKILITWPLPEAAMARARESY-------DVIAHGDDPKITIDEMIETAKSVDALLITLNE 54

Query: 69  PVTAEILRLLPE-VRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLID 127
               E++  +PE ++ +   S G +HID+  C+ RG+ + NA +  ++   D A      
Sbjct: 55  KCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDL 114

Query: 128 VLRKLSAAD 136
           +      AD
Sbjct: 115 IDALFGGAD 123

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 49  HEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALAN 108
            E      +            +T E L     +R++V   +G ++ID+      G+A+ N
Sbjct: 34  QEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCN 93

Query: 109 AGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWP 145
                S      ++ +  +  R++  A      G  P
Sbjct: 94  VPAA-SVYSEQASIEMREEAAREIRRA----ITGRIP 125

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVA--TSAGLNHIDVVECRRRGV 104
            L E     A     I S    P  A +   +    +      + G ++ID+   ++ G+
Sbjct: 33  FLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGI 92

Query: 105 ALANAGNVFSEDVADYALGLLIDVLRKLSAAD 136
            L+N        V +     L  ++  L+  +
Sbjct: 93  RLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLII 215
           + GK   + G G +G   A+ L  FG  V     +   ++      +  E+    +    
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINAL--QAAMEGYEVTTMDEACQE 79

Query: 216 C--CALTDQTHHLINKQVLLALGKKGVIINVG-RGAIIDEKEMVGCLLRGEIGGAGLDVF 272
                 T     +I  +    +    ++ N+G     ID K +    +        +D +
Sbjct: 80  GNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY 139

Query: 273 E 273
            
Sbjct: 140 R 140

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----VTYPFYPDVCE 205
            P+  +L  +   IVG G +    A+ L   G  ++ N+    P             V  
Sbjct: 4   LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEG 63

Query: 206 LAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINV 244
               + +     A+       +N++V  A   + +  NV
Sbjct: 64  PFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 48.4 bits (115), Expect = 7e-08
 Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 47  PLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVA--TSAGLNHIDVVECRRRGV 104
            L       A     +         AE L+ L +  +      + G+++ID+ + +  G 
Sbjct: 34  LLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGF 93

Query: 105 ALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPI 146
            + N           +A+  ++      +      ++   P+
Sbjct: 94  QITNVPVY---SYTTHAVRNMVVKAFDNNLELVEGKEAETPV 132

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCAL 219
            V I+G+G+IG ++ +                      P    + E    SDV  +    
Sbjct: 4   TVLIIGMGNIGKKLVELGNFEKIYAYDRISKD-----IPGVVRLDEFQVPSDVSTVVECA 58

Query: 220 TDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV 256
           + +     + Q+L       +II+    A    +E  
Sbjct: 59  SPEAVKEYSLQILKN-PVNYIIISTSAFADEVFRERF 94

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVTYPFYPDVCELAANSDVLI 214
           +VG +GLG +G  ++K L   G  +  + RN +      +           +A   DV+I
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII 250
                +     +        LG+ G+I     G ++
Sbjct: 62  TMLPNSPHVKEVA-------LGENGIIEGAKPGTVL 90

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 13/108 (12%)

Query: 159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK-----------PSVTYPFYPDVCELA 207
           K+  ++GLG  G  + K L   G  V     N++             +      +     
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60

Query: 208 ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEM 255
              +   +  A+        +    L L +  +     +       ++
Sbjct: 61  GIRNFEYVIVAIGANIQA--STLTTLLLKELDIPNIWVKAQNYYHHKV 106

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (100), Expect = 7e-06
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 12  PQVLLLRK--PSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAP 69
            + LL+          L    +T+     ++ ++ AL   +           I   +   
Sbjct: 5   IKFLLVEGVHQKALESLRAAGYTN-----IEFHKGALDDEQLKE-SIRDAHFIGLRSRTH 58

Query: 70  VTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVL 129
           +T +++    ++  + A + G N +D+    +RG+ + NA    +++  +     +   L
Sbjct: 59  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKL 118

Query: 130 RKLS 133
            K S
Sbjct: 119 IKYS 122

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVC 204
            + I G+G +G  +AK L   G  +     +K          D  
Sbjct: 2   YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL 46

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 12/51 (23%), Positives = 14/51 (27%)

Query: 154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVC 204
           +   GK V I+GLG  G        A G           P         V 
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVE 51

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 15/162 (9%)

Query: 159 KRVGIVGLGSIGSEVAKRL-------EAFGCCVSYNSRN---KKPSVTYPFYPDVCELAA 208
           + V IVG+G +G   AK L       + +G  ++  S +       +             
Sbjct: 2   QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61

Query: 209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAG 268
           + D   +  +   +T   I K++   L +   + + G        ++   L +  +GG  
Sbjct: 62  SPD--FVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHP 119

Query: 269 LDVFENE-PDVPEQ-LFALDNVVLSPHSAVFTPESFKDVCEL 308
           +   E    +     L+    V+L+P       +  K V  +
Sbjct: 120 IAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLKLVKRV 160

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 160 RVGIVGLGSIGSEVAKRLEAFG----CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLII 215
           RV IVG G++G  V K +          +                 DV + A + DVL +
Sbjct: 5   RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFL 64

Query: 216 C 216
           C
Sbjct: 65  C 65

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 127 DVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC 182
            V + L  +  F      P      L   L   +V ++G G +G E+ K L   G 
Sbjct: 8   HVKKFLERSGPFTHPDFEPSTES--LQFLLDTCKVLVIGAGGLGCELLKNLALSGF 61

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 140 RQ-GLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCC 183
           RQ  L   + +      L   RV IVGLG +G   ++ L + G  
Sbjct: 13  RQIILRGFDFDGQ--EALKDSRVLIVGLGGLGCAASQYLASAGVG 55

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 16/66 (24%), Positives = 26/66 (39%)

Query: 160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCAL 219
           ++G+VGLG IG+ +A  L   G  +   SR +           V E   +  +L     +
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKII 61

Query: 220 TDQTHH 225
              T  
Sbjct: 62  FLCTPI 67

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSVTYPFYPDVCELAANSDVLI 214
           L G  V + GLG++G  +A      G   +  ++  ++ +           L        
Sbjct: 25  LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 84

Query: 215 ICCALTDQTHHL 226
              A       +
Sbjct: 85  DVFAPCAMGGVI 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.9
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.88
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.88
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.84
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.83
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.81
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.79
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.59
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.46
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.37
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.35
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.29
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.25
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.22
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.03
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.02
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.93
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.92
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.87
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.6
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.53
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.42
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.42
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.34
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.31
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.28
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.17
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.16
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.14
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.12
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.11
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.08
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.06
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.05
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.96
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.91
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.9
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.9
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.88
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.86
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.64
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.5
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.47
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.46
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.43
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.42
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.38
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.38
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.37
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.35
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.3
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.27
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.26
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.21
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.2
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.18
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.16
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.11
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.05
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.01
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.0
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.96
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.93
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.92
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.89
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.89
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.84
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.81
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.81
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.8
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.79
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.78
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.77
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.77
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.75
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.69
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.66
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.64
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.63
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.63
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.61
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.61
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.61
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.58
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.55
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.51
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.43
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.42
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.42
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.35
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.3
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.28
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.22
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.18
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.99
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.96
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.93
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.9
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.81
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.8
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.75
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.61
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.59
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.56
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.53
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.52
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.49
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.47
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.44
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.43
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.25
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.24
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.24
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.16
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.16
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.16
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.14
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.12
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.11
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.03
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	94.97
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.96
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.94
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.94
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.92
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.91
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.81
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.75
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	94.74
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.7
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.68
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.63
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.61
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.52
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.48
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.48
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.45
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.39
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.38
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.36
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.32
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.29
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.14
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.1
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.09
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.06
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.01
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.0
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.85
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.75
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.62
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.57
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	93.49
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.44
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.35
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.35
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.23
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.15
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	93.08
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.07
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.98
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.98
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.85
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.84
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.79
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.78
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.74
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.71
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.7
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.67
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.5
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.49
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.46
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.43
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.4
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.33
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.23
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.21
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.2
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.05
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.97
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.87
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.73
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.67
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.65
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.63
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.59
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.53
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.38
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.35
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.28
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.1
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.02
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	90.9
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.89
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.8
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.73
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.73
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.6
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	90.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.45
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.38
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.34
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.33
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	90.3
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.25
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	90.21
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.18
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.02
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.85
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.66
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	89.62
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	89.59
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.55
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.54
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.48
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.44
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	89.42
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.39
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.15
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.12
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.09
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.06
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.03
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.99
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.86
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.79
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.78
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.77
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.7
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.66
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.52
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	88.4
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.35
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.28
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.14
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.11
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.98
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.98
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.88
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.83
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.21
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.0
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	86.74
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	86.71
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	86.59
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.55
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	86.51
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.5
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.45
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.32
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.21
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	86.18
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.07
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.95
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	85.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.73
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.62
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.62
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.5
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.26
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.15
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	85.07
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	84.99
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.82
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.81
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.26
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	84.23
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.08
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.07
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.98
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.95
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.63
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.51
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.34
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	83.34
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.3
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.22
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.12
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.87
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.84
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	82.81
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	82.75
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	82.72
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	82.53
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.48
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	82.39
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.28
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.19
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	81.76
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.38
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	81.05
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.03
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.55
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	80.52
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.45
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	80.27
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	80.15
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	80.12
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	80.06

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-53  Score=370.87  Aligned_cols=181  Identities=34%  Similarity=0.499  Sum_probs=167.3

Q ss_pred             chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          113 FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       113 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |+.+||||++++||++.|++..+++.+++|.|.+.  ...+.++.|+++||+|+|.||+.+|+++++|||+|.+|+++..
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~--~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG--GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcc--ccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            57899999999999999999999999999999653  2347889999999999999999999999999999999998765


Q ss_pred             CCC---CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160          193 PSV---TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       193 ~~~---~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                      +..   ......+++|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|+||+|
T Consensus        79 ~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~l  158 (184)
T d1ygya1          79 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGL  158 (184)
T ss_dssp             HHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEE
T ss_pred             hhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEE
Confidence            432   11235689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcccccCCceEEcCCCC
Q 020160          270 DVFENEPDVPEQLFALDNVVLSPHSA  295 (330)
Q Consensus       270 DV~~~EP~~~~~L~~~~nvilTPHia  295 (330)
                      |||++||.+++|||++|||++|||||
T Consensus       159 DV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         159 DVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             eCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999998877999999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=1.6e-52  Score=367.31  Aligned_cols=184  Identities=29%  Similarity=0.475  Sum_probs=168.7

Q ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC-CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAE-FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       114 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +.+|||+++++||++.|++.++++.+|+|.|..... ...+.+++|+|+||||+|+||+.+|+++++|||+|.+|++...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            468999999999999999999999999999965322 2348899999999999999999999999999999999998765


Q ss_pred             CCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 020160          193 PSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGA  267 (330)
Q Consensus       193 ~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga  267 (330)
                      ...     ......++++++++||+|++|+|+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|+|+||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            422     234467899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCcccccCCceEEcCCCCCC
Q 020160          268 GLDVFENEPDVPEQLFALDNVVLSPHSAVF  297 (330)
Q Consensus       268 ~lDV~~~EP~~~~~L~~~~nvilTPHia~~  297 (330)
                      ++|||++||.++++||++|||++|||+|++
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999777799999999999999984

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.5e-51  Score=361.58  Aligned_cols=182  Identities=30%  Similarity=0.483  Sum_probs=166.8

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-----CCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECC
Q 020160          115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINA-----EFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSR  189 (330)
Q Consensus       115 ~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~-----~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~  189 (330)
                      ++|||+++++||++.|++..+++.+|+|.|.+..     ....+.+|+|+|+||||+|+||+.+|+++++|||+|.+|++
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999996532     12357899999999999999999999999999999999999


Q ss_pred             CCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          190 NKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       190 ~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +.....    +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            866532    3445679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCC--CcccccCCceEEcCCCCC
Q 020160          266 GAGLDVFENEPDV--PEQLFALDNVVLSPHSAV  296 (330)
Q Consensus       266 ga~lDV~~~EP~~--~~~L~~~~nvilTPHia~  296 (330)
                      ||++|||++||.+  .++||++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            9999999999975  348999999999999985

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=3.2e-51  Score=358.35  Aligned_cols=182  Identities=24%  Similarity=0.419  Sum_probs=166.7

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC
Q 020160          115 EDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS  194 (330)
Q Consensus       115 ~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~  194 (330)
                      .+||||+++++|++.|++..++..+++|.|........+.+++|+++||||+|+||+.+|+++++|||+|.+|++...+.
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE   80 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence            37999999999999999999999999999964322334778999999999999999999999999999999999876542


Q ss_pred             C-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 020160          195 V-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGL  269 (330)
Q Consensus       195 ~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~l  269 (330)
                      .     +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+|
T Consensus        81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l  160 (188)
T d2naca1          81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG  160 (188)
T ss_dssp             HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred             cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence            1     34456799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCc-ccccCCceEEcCCCCC
Q 020160          270 DVFENEPDVPE-QLFALDNVVLSPHSAV  296 (330)
Q Consensus       270 DV~~~EP~~~~-~L~~~~nvilTPHia~  296 (330)
                      |||++||.+.. |||.+||+++|||+||
T Consensus       161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         161 DVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            99999998754 8999999999999997

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.5e-51  Score=363.37  Aligned_cols=183  Identities=27%  Similarity=0.446  Sum_probs=166.1

Q ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       114 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .++||||+++++|++.|++..+++.+++|.|.+.. ...+++|.|+||||||+|+||+.+|+++++|||+|++||++...
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~-~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT-CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc-CcccccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            47899999999999999999999999999996432 23588999999999999999999999999999999999997654


Q ss_pred             CC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 020160          194 SV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVF  272 (330)
Q Consensus       194 ~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~  272 (330)
                      .. ......++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||
T Consensus        81 ~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~  160 (199)
T d1dxya1          81 GDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY  160 (199)
T ss_dssp             SCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred             hhhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEecccc
Confidence            32 22235689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC----------C----cccccCCceEEcCCCCCC
Q 020160          273 ENEPDV----------P----EQLFALDNVVLSPHSAVF  297 (330)
Q Consensus       273 ~~EP~~----------~----~~L~~~~nvilTPHia~~  297 (330)
                      ++||.+          .    ++||.+|||++|||+||+
T Consensus       161 ~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             TTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            999952          1    358899999999999996

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-50  Score=352.73  Aligned_cols=182  Identities=25%  Similarity=0.409  Sum_probs=159.3

Q ss_pred             chhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          113 FSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       113 ~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |+++||||+++++|++.|+++.++..+++|.|.+.  ...+.++.|++|||||+|.||+.+|+++++|||+|.+|++...
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~--~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL--AAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccc--ccccccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            68999999999999999999999999999999654  2346789999999999999999999999999999999998765


Q ss_pred             CCC-CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          193 PSV-TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       193 ~~~-~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      ... ......++++++++||+|++|+|+|++|+++|+++.|++||++++|||+|||++||+++|+++|++|++.||++||
T Consensus        79 ~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV  158 (188)
T d1sc6a1          79 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV  158 (188)
T ss_dssp             CCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred             chhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence            443 3334578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC-----CcccccCCceEEcCCCCC
Q 020160          272 FENEPDV-----PEQLFALDNVVLSPHSAV  296 (330)
Q Consensus       272 ~~~EP~~-----~~~L~~~~nvilTPHia~  296 (330)
                      |++||..     .++||++|||++|||+||
T Consensus       159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999963     237999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=8.5e-50  Score=347.05  Aligned_cols=179  Identities=26%  Similarity=0.378  Sum_probs=163.5

Q ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       114 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      +++||||+++++|+++|++..+++.+++|.|.+..   ...+++|+||||||+|.||+.+|+++++|||+|.+|++++..
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeeccccccccccccccc
Confidence            57899999999999999999999999999996542   234699999999999999999999999999999999998764


Q ss_pred             CCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160          194 SVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE  273 (330)
Q Consensus       194 ~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  273 (330)
                      .. .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+++|+++|++|++.||++|||+
T Consensus        78 ~~-~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~  156 (181)
T d1qp8a1          78 GP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW  156 (181)
T ss_dssp             SS-SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             cc-eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCC
Confidence            32 33457899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC-CC-cccccCCceEEcCCCCC
Q 020160          274 NEPD-VP-EQLFALDNVVLSPHSAV  296 (330)
Q Consensus       274 ~EP~-~~-~~L~~~~nvilTPHia~  296 (330)
                      .||+ +. +||+.+|||++|||+||
T Consensus       157 ~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         157 GRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCCChHHcCCCEEeccccCc
Confidence            7764 33 37999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=3.7e-50  Score=353.57  Aligned_cols=181  Identities=26%  Similarity=0.373  Sum_probs=163.3

Q ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          114 SEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       114 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .++||||+++++|+++|+++.+++.+++|.|...  ...|++|+|+||||||+|+||+.+|+++++|||+|.+||+....
T Consensus         1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~--~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1           1 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA--PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP   78 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT--TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcC--CCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccc
Confidence            3689999999999999999999999999987533  23588999999999999999999999999999999999987653


Q ss_pred             CC--CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          194 SV--TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       194 ~~--~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      ..  ......++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+++||++||
T Consensus        79 ~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV  158 (197)
T d1j4aa1          79 ELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDV  158 (197)
T ss_dssp             HHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred             ccccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeec
Confidence            21  2234578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC--------------cccccCCceEEcCCCCC
Q 020160          272 FENEPDVP--------------EQLFALDNVVLSPHSAV  296 (330)
Q Consensus       272 ~~~EP~~~--------------~~L~~~~nvilTPHia~  296 (330)
                      |++||...              ++||.+|||++|||+|+
T Consensus       159 ~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         159 YEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             CTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             cccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99997421              25899999999999985

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.4e-27  Score=195.55  Aligned_cols=127  Identities=22%  Similarity=0.239  Sum_probs=111.1

Q ss_pred             CCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160           11 FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG   90 (330)
Q Consensus        11 k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G   90 (330)
                      |||||++++.  ++...+.  |++.|++.... . ...+ .+.+.++++|++++++.+++++++++++|+||+|++.|+|
T Consensus         2 Mpkvli~~~~--~~~~~~~--L~~~~~v~~~~-~-~~~~-el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G   74 (130)
T d1ygya2           2 LPVVLIADKL--APSTVAA--LGDQVEVRWVD-G-PDRD-KLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVG   74 (130)
T ss_dssp             CCEEEECSSC--CGGGGTT--SCSSSEEEECC-T-TSHH-HHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSC
T ss_pred             CCEEEEECCC--CHHHHHH--HhCCcEEEECC-C-CCHH-HHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccc
Confidence            5999999987  6777777  99999875432 2 2233 4455678999999988889999999999999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCC
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLW  144 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W  144 (330)
                      |||||+++|+++||.|+|+||+++.+|||+++++||++.|++...++.+|+|.|
T Consensus        75 ~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          75 LDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             ccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            999999999999999999999999999999999999999999988777777777

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.90  E-value=1.3e-23  Score=171.53  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=96.4

Q ss_pred             CCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCC-CcceeEEcCC
Q 020160           11 FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLP-EVRLVVATSA   89 (330)
Q Consensus        11 k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~-~Lk~I~~~~~   89 (330)
                      |||||++.++  ++...+.  +++.|+++.+.....-..+.+.+.++++|+|++++..++++++++++| +||+|++.|+
T Consensus         1 K~kVlit~~~--~~~~~~~--l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPL--PEAAMAR--ARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCC--CHHHHHH--HHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCC--CHHHHHH--HHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            7999999988  6777777  899999765443222234445666789999998888899999999997 7999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHh
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLR  130 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R  130 (330)
                      |+||||+++|+++||+|+|+||+++++|||+++++|+.+.+
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999977765555444

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.88  E-value=6.2e-25  Score=177.41  Aligned_cols=120  Identities=18%  Similarity=0.226  Sum_probs=103.9

Q ss_pred             eEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCCCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAGLN   92 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   92 (330)
                      ||+++.++  +++..+.  +++.|+++...            .+.++|+++++   +++++.++++|+||||++.|+|+|
T Consensus         2 ki~v~~~l--p~e~~e~--L~~~~~v~~~~------------d~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D   62 (121)
T d1qp8a2           2 ELYVNFEL--PPEAEEE--LRKYFKIVRGG------------DLGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLD   62 (121)
T ss_dssp             EEECCSCC--CHHHHHH--HHTTCEEECSS------------CCTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCT
T ss_pred             EEEEeCCC--CHHHHHH--hhhcceEeecc------------cccccceeeee---ccCHHHHhcCCCceEEEecccCcC
Confidence            68888887  5777777  88888865421            13567887764   699999999999999999999999


Q ss_pred             CCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHH
Q 020160           93 HIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSE  172 (330)
Q Consensus        93 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~  172 (330)
                      |+|++.++ +||.|+|++|+++.+||||+++++|++.|                             +++|+|+|+||++
T Consensus        63 ~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r-----------------------------~l~i~G~G~iG~~  112 (121)
T d1qp8a2          63 HLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR-----------------------------NLITYATGGRPRN  112 (121)
T ss_dssp             TSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHH-----------------------------HHHHHHTTSCCSC
T ss_pred             CCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcC-----------------------------CEEEEcCCHHHHH
Confidence            99999985 69999999999999999999999999987                             3689999999999


Q ss_pred             HHHHHHhCC
Q 020160          173 VAKRLEAFG  181 (330)
Q Consensus       173 ~A~~l~~~G  181 (330)
                      +|+|+++||
T Consensus       113 iA~r~~a~G  121 (121)
T d1qp8a2         113 IAKREDYIG  121 (121)
T ss_dssp             BCCGGGTC-
T ss_pred             HHHHHHhcC
Confidence            999999998

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.9e-23  Score=168.09  Aligned_cols=121  Identities=15%  Similarity=0.096  Sum_probs=97.1

Q ss_pred             CCCeEEEecCCCCcccccchHhhhccC-eEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcC
Q 020160           10 QFPQVLLLRKPSGFAMLGEQFFTSNKF-QYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATS   88 (330)
Q Consensus        10 ~k~~vl~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~   88 (330)
                      .|+|||++.+.  ++...+.  |++.+ ..+.......+ .+.+.+.++++|++++++..++++++++++|+||+|+++|
T Consensus         3 ~kmKILv~d~i--~~~a~~~--L~~~g~~~v~~~~~~~~-~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~g   77 (132)
T d1sc6a2           3 DKIKFLLVEGV--HQKALES--LRAAGYTNIEFHKGALD-DEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFA   77 (132)
T ss_dssp             SSCCEEECSCC--CHHHHHH--HHHTTCCCEEECSSCCC-HHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECS
T ss_pred             CCCEEEEECCC--CHHHHHH--HHhCCCEEEEeCCCCCC-HHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEec
Confidence            36899999998  6777766  87764 44443333333 4455667899999999888899999999999999999999


Q ss_pred             CCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHH
Q 020160           89 AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADC  137 (330)
Q Consensus        89 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~  137 (330)
                      +||||||+++|+++||.|+|+||+++.+|||++++||+  .|++..++.
T Consensus        78 vG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~  124 (132)
T d1sc6a2          78 IGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDN  124 (132)
T ss_dssp             SCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             ccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhC
Confidence            99999999999999999999999999999998766554  444444444

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.84  E-value=8.3e-22  Score=161.02  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=92.1

Q ss_pred             eEEEecCCCCcccccchHhhhc--cCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCC--CcceeEEcC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSN--KFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLP--EVRLVVATS   88 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~--~Lk~I~~~~   88 (330)
                      ||++.+......+..+.  +.+  .+++.. .+.... ++ ..+.++++|+|++....++++++++++|  +||+|++.|
T Consensus         2 KIl~~~~~~~e~~~l~~--~~~~~~~~v~~-~~~~~~-~~-~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~   76 (131)
T d1dxya2           2 KIIAYGARVDEIQYFKQ--WAKDTGNTLEY-HTEFLD-EN-TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRN   76 (131)
T ss_dssp             EEEECSCCTTTHHHHHH--HHHHHCCEEEE-CSSCCC-TT-GGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESS
T ss_pred             EEEEEecCcCcHHHHHH--HHHHcCeEEEE-cCCCCC-HH-HHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcc
Confidence            57877544223333434  443  344433 322211 22 3445689999999888899999999866  799999999


Q ss_pred             CCCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHH
Q 020160           89 AGLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADC  137 (330)
Q Consensus        89 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~  137 (330)
                      +|+||||+++|+++||.|+|+||+++++|||++++++|++.|++...++
T Consensus        77 vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~  125 (131)
T d1dxya2          77 VGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGET  125 (131)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHh
Confidence            9999999999999999999999999999999999999999999876643

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.83  E-value=3.9e-21  Score=157.09  Aligned_cols=126  Identities=16%  Similarity=0.171  Sum_probs=97.0

Q ss_pred             CCeEEEecCCCCcccccchHhhhccCeEEEeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCCCcceeEEcCCC
Q 020160           11 FPQVLLLRKPSGFAMLGEQFFTSNKFQYLKAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLPEVRLVVATSAG   90 (330)
Q Consensus        11 k~~vl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G   90 (330)
                      +|+|+++....  -..+ .+.|++..++.. .+... .+++..+.+.+++++++++..++++++++++|+||+|++.|+|
T Consensus         1 mP~v~~ld~~d--~~~e-~~~L~~~~~v~~-~~~~s-~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G   75 (133)
T d1mx3a2           1 MPLVALLDGRD--CTVE-MPILKDVATVAF-CDAQS-TQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSG   75 (133)
T ss_dssp             CCEEEESSCSC--CTTT-HHHHTTTCEEEE-CCCSS-GGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSC
T ss_pred             CCEEEEecCCc--chhh-HHHhcccceEEE-ecCCC-hHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCC
Confidence            38899987552  1222 233777776544 33222 2232233345678888888889999999999999999999999


Q ss_pred             CCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC
Q 020160           91 LNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAADCFVRQGLWPI  146 (330)
Q Consensus        91 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~  146 (330)
                      +||||+++|+++||.|+|+||++. ++|||+++++|++.|++++..    +|.|+.
T Consensus        76 ~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~~  126 (133)
T d1mx3a2          76 FDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRIPD  126 (133)
T ss_dssp             CTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTTT
T ss_pred             cccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hccccc
Confidence            999999999999999999999988 579999999999999998774    466643

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.81  E-value=6.7e-21  Score=161.97  Aligned_cols=113  Identities=15%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             hhhc-cCeEEEeccCCCChHHHHhhccCCceEEEEcC--CCCCCHHHHccCCCcceeEEcCCCCCCCChhHHhhcCcEEE
Q 020160           31 FTSN-KFQYLKAYESALPLHEFLTLHAHSVKAIFSSA--GAPVTAEILRLLPEVRLVVATSAGLNHIDVVECRRRGVALA  107 (330)
Q Consensus        31 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~--~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~  107 (330)
                      +|++ .++++...+.+.+ .+.+.+++.++|++++++  ..++++|.|+++|+||+|++.|+|+||||+++|+++||.|+
T Consensus        62 ~Le~~GhelV~~sd~~~~-~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~  140 (186)
T d2naca2          62 YLESNGHTLVVTSDKDGP-DSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVA  140 (186)
T ss_dssp             HHHHTTCEEEEESCCSST-TSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEE
T ss_pred             HHHHCCCEEEEecCCCCC-hHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEEE
Confidence            3654 5676665544433 334566778999999974  57899999999999999999999999999999999999999


Q ss_pred             eCCCCchhhHHHHH--------HHHHHHHHhchHHHHHHHHcCCC
Q 020160          108 NAGNVFSEDVADYA--------LGLLIDVLRKLSAADCFVRQGLW  144 (330)
Q Consensus       108 n~~~~~~~~vAE~a--------l~l~L~~~R~~~~~~~~~~~g~W  144 (330)
                      |+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       141 n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         141 EVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             ECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             ECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            99999999999999        77888888998888888888877

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.79  E-value=1.9e-20  Score=153.44  Aligned_cols=118  Identities=11%  Similarity=0.085  Sum_probs=87.7

Q ss_pred             eEEEecCCCCcccccchHhhhccCeEE-EeccCCCChHHHHhhccCCceEEEEcCCCCCCHHHHccCC--CcceeEEcCC
Q 020160           13 QVLLLRKPSGFAMLGEQFFTSNKFQYL-KAYESALPLHEFLTLHAHSVKAIFSSAGAPVTAEILRLLP--EVRLVVATSA   89 (330)
Q Consensus        13 ~vl~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~--~Lk~I~~~~~   89 (330)
                      ||++.+.......+.+. ++++.+++. ...+... .++ +.+.++++|+|++++..++++++++++|  +||+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~-~~~~~~~v~v~~~~~~~-~~e-~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKE-WEDAHKDVEVEYTDKLL-TPE-TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHH-HHHTCTTSEEEECSSCC-CTT-TGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHH-HHHhCCCEEEEECCCCC-CHH-HHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            67887655322223333 244555432 2222222 223 3556789999999888899999999765  6999999999


Q ss_pred             CCCCCChhHHhhcCcEEEeCCCCchhhHHHHHHHHHHHHHhchHHHH
Q 020160           90 GLNHIDVVECRRRGVALANAGNVFSEDVADYALGLLIDVLRKLSAAD  136 (330)
Q Consensus        90 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~R~~~~~~  136 (330)
                      ||||||+++|+++||.|+|+|++   ++||+++++||+++|++....
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~~~  122 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLEL  122 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHHHH
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999987   589999999999999875543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.5e-16  Score=130.27  Aligned_cols=116  Identities=16%  Similarity=0.247  Sum_probs=92.7

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      +..+.||+++|+|+|.||+.+|+++++|||+|++++..|....     ++. ..++++++..+|+++.++    .++++|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~-v~~~~~a~~~adivvtaT----Gn~~vI   93 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYE-VTTMDEACQEGNIFVTTT----GCIDII   93 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEECS----SCSCSB
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceE-eeehhhhhhhccEEEecC----CCccch
Confidence            3458999999999999999999999999999999999875421     332 458999999999887763    577899


Q ss_pred             cHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160          228 NKQVLLALGKKGVIINVG-RGAIIDEKEMVGCLLRGEIGGAGLDVFE  273 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~-rg~~vd~~aL~~aL~~g~i~ga~lDV~~  273 (330)
                      +.+.|++||+|+++.|+| +..-+|.++|.+...+.+.....+|.|+
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            999999999999999997 5677999998875544433334445443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=2.6e-14  Score=119.57  Aligned_cols=111  Identities=20%  Similarity=0.274  Sum_probs=96.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||+.+|++|...|++|.+||++++..     .+.....+..|++++||+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            589999999999999999999999999999987542     2344567899999999999999999999888762  357


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      +..+++|.++|+++....-....+.+.+.+..+.  .+|.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            8889999999999999998889999999998885  5664

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.37  E-value=1e-12  Score=109.76  Aligned_cols=143  Identities=21%  Similarity=0.302  Sum_probs=95.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCC-CCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTY-PFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~-~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ++|||||+|.||+.+|+.|+..|++|.+|||+++..     .+. ....+..+.+++||+|++++|.. .++.++ .+..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence            589999999999999999999999999999976421     121 12234447889999999999954 666666 4677


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC-CC-CCcccccCCceEEcCCCCCCCHHHHHHH
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE-PD-VPEQLFALDNVVLSPHSAVFTPESFKDV  305 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-P~-~~~~L~~~~nvilTPHia~~t~~~~~~~  305 (330)
                      ..++++.++++++....-.... ...+...-+..-.+...+.. |. ....|+....+++||+-++. .+..+.+
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~-~~~~~~v  151 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQLACL  151 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHHHHHH
T ss_pred             hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC-HHHHHHH
Confidence            8899999999998765433333 33444433332222221111 11 12358888889999986644 4444443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=4.2e-13  Score=112.20  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=95.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc--HHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN--KQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  231 (330)
                      ++|||||+|.||..+|++|...|++|.+||++++..     .+.....++.|++..+|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999986542     2334457899999999999999999888776653  346


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      +..+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7889999999999999999999999999998885  6775

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.29  E-value=2.2e-12  Score=107.09  Aligned_cols=98  Identities=22%  Similarity=0.354  Sum_probs=82.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .+.||++.|+|||.+|+.+|++++++|++|++++..|-..     .++. ..+++|+++.+|+++.++.    .+++|+.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~-v~~~~~a~~~aDi~vTaTG----n~~vI~~   94 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCTG----NVDVIKL   94 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECCS----SSSSBCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCc-cCchhHccccCcEEEEcCC----CCccccH
Confidence            4899999999999999999999999999999999877432     2443 4689999999999998764    3458999


Q ss_pred             HHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 020160          230 QVLLALGKKGVIINVGRGAI-IDEKEMVG  257 (330)
Q Consensus       230 ~~l~~mk~gailIN~~rg~~-vd~~aL~~  257 (330)
                      +.|+.||+|+++.|+|.... +|.++|.+
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99999999999999998765 56655543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.25  E-value=8.1e-12  Score=104.46  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=100.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-----CCC--CCCCCHHH-HhhcCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-----VTY--PFYPDVCE-LAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-----~~~--~~~~~l~e-ll~~aDvV~l~~P~t~~t~~li~  228 (330)
                      |+|+|||+|.||.++|+.|+..|.  +|++||++++..     .+.  ....+.++ ....+|+|++|+|.. .+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence            479999999999999999998885  789999976431     121  11233333 345799999999954 444454 


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC-CC-CCcccccCCceEEcCCCCCCCHHHHHHH
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE-PD-VPEQLFALDNVVLSPHSAVFTPESFKDV  305 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-P~-~~~~L~~~~nvilTPHia~~t~~~~~~~  305 (330)
                      .+....++++.++++++.....-.+++.+.+...-+.+--+.-.+.. |. ....|+...++++|||-.. +.+..+.+
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~~~v  157 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLKLV  157 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHHHHH
Confidence            45778899999999999977666667777777665655555444332 21 2235999999999998664 44444433

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.22  E-value=1.1e-11  Score=104.67  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=92.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------CCCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------TYPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .++|||||+|.||..+|++|...|++|.+|||++++..             +.....++.+.+..+|.+++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            46899999999999999999999999999999875311             11122355567888999999999998888


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      ..+ ...+..+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            765 4688899999999999999999999999999998885  6674

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=4.6e-11  Score=98.83  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=85.3

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL  235 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m  235 (330)
                      ||||||+|.||..+|++|...|..+. |+++..+..    ......+..+.+.++|++++++|..++..... ...+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            79999999999999999998888765 555443211    11112334567788999999999888777554 5688999


Q ss_pred             CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 020160          236 GKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDV  271 (330)
Q Consensus       236 k~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV  271 (330)
                      +++.++||+++...-....+.+.+++..+.  .+|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999998886  5675

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.02  E-value=1.2e-10  Score=95.79  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      ++|||||+|.||+.+|+.|...|++|.++++.+.+..     +.....+.+|++++||+|++++|......-+  .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~--~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAA--RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHH--HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHH--Hhhcc
Confidence            5899999999999999999999999999987765421     2233567899999999999999976544322  22333


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          234 ALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       234 ~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      .  .+.++|+++.........+.+.+++.+
T Consensus        79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 H--VRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             T--CCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             c--CCceeeccCcCCHHHHHHHHHHHhccC
Confidence            2  367899999888777788888776543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.93  E-value=8e-10  Score=90.50  Aligned_cols=93  Identities=19%  Similarity=0.197  Sum_probs=73.2

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      ..=++|+||| +|.||+.+|++|+..|++|.+||+...        .+.++.++.+|++++++|...... . -.+.+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~-v-~~~~~~~   76 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW--------AVAESILANADVVIVSVPINLTLE-T-IERLKPY   76 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG--------GGHHHHHTTCSEEEECSCGGGHHH-H-HHHHGGG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc--------cccchhhhhccccccccchhhhee-e-eeccccc
Confidence            3457999999 999999999999999999999998653        345678899999999999654333 2 3678889


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHH
Q 020160          235 LGKKGVIINVGRGAIIDEKEMVGC  258 (330)
Q Consensus       235 mk~gailIN~~rg~~vd~~aL~~a  258 (330)
                      +++++++++++.-+.--.+++.+.
T Consensus        77 ~~~~~iiiD~~Svk~~~~~~~~~~  100 (152)
T d2pv7a2          77 LTENMLLADLTSVKREPLAKMLEV  100 (152)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             ccCCceEEEecccCHHHHHHHHHH
Confidence            999999999987554333444433

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.92  E-value=1.2e-09  Score=89.93  Aligned_cols=96  Identities=21%  Similarity=0.315  Sum_probs=77.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      ++|||||+|+||+++++.|...|.+|.+++|+.+..      .+.....+.++++++||+|+++++.. .   +  .+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~-~---~--~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQ-L---F--ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGG-G---H--HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchH-h---H--HHHh
Confidence            589999999999999999999999999999876432      14555678999999999999999631 1   1  5678


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      +.++++.++|++.-|  +..+.|.+.+..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            889999999999877  4567777777543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.87  E-value=4.6e-10  Score=94.39  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=88.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC--------CCCCCHHH---HhhcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY--------PFYPDVCE---LAANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~--------~~~~~l~e---ll~~aDvV~l~~P~t~~  222 (330)
                      ++|||||+|.||..+|++|...|++|.+|||++++..     +.        ....+.++   .+..++.+..+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            6899999999999999999999999999999765321     11        11233444   45688999999987777


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFE  273 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~  273 (330)
                      .+..++ .....++++.++||++....-+...+.+.|.+..+...-.-|+.
T Consensus        82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            666654 56778999999999999999999999999999888643333444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.72  E-value=1.5e-08  Score=84.39  Aligned_cols=103  Identities=18%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------------------CCCCCCCHHHHhhcCCEEEEec
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------------TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------------~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .||++|||.|.||..+|..|...|++|.+|+|++....                    ......++.|.++.||+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            48999999999999999999999999999999753200                    0111357889999999999999


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      |.. .++.++ ++....++++.+++- .-|....+..+.+.+....
T Consensus        81 ~~~-~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          81 PAI-HHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CGG-GHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             chh-HHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            855 344443 456778999998774 4455455556666776554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.60  E-value=1.9e-08  Score=83.58  Aligned_cols=91  Identities=21%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC--------CC----CCCCCHHHHhhcCCEEEEecc-CCcc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV--------TY----PFYPDVCELAANSDVLIICCA-LTDQ  222 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~----~~~~~l~ell~~aDvV~l~~P-~t~~  222 (330)
                      +...++.|||.|..|...++.++++|.+|.++|.+.....        ..    .....+++.+++||+|+.++- ....
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            5678999999999999999999999999999998764321        01    112357788999999988752 2345


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ...+|.++.++.||||+++||++=
T Consensus       110 aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCeeecHHHHhhcCCCcEEEEeec
Confidence            677999999999999999999964

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=4.8e-09  Score=85.64  Aligned_cols=84  Identities=13%  Similarity=-0.013  Sum_probs=57.3

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL  235 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m  235 (330)
                      |||||+|+||+.+++.|+.-+..+.+|+|++....     ......++.+++++||+|++|+|.. ..     .+.+..+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh
Confidence            79999999999999999874433468888765421     2233567889999999999999964 22     3455556


Q ss_pred             C-CCcEEEEcCCCccc
Q 020160          236 G-KKGVIINVGRGAII  250 (330)
Q Consensus       236 k-~gailIN~~rg~~v  250 (330)
                      + ++.++|+++.+.-.
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence            4 78999999876543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.42  E-value=1.3e-07  Score=77.96  Aligned_cols=90  Identities=27%  Similarity=0.332  Sum_probs=66.6

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------C--CCCCCCHHHHhhcCCEEEEeccCCccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------T--YPFYPDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      .+.++++.|||.|.||+.+++.|...|. ++.+++|+.....      +  ...+.++.+.+.++|+|+.+++   ....
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence            4789999999999999999999999998 6899999854321      2  2235678888999999999875   3455


Q ss_pred             cccHHHHhcC------CCCcEEEEcCCC
Q 020160          226 LINKQVLLAL------GKKGVIINVGRG  247 (330)
Q Consensus       226 li~~~~l~~m------k~gailIN~~rg  247 (330)
                      +|+++.++..      +...++|+.|..
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            7777766421      223467776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.42  E-value=5.2e-07  Score=75.69  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CCC-----------------C------------C
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TYP-----------------F------------Y  200 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~~-----------------~------------~  200 (330)
                      .+...+|.|||.|..|...++.++++|.+|.++|.+.....     +..                 +            .
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            35667999999999999999999999999999998765411     000                 0            0


Q ss_pred             CCHHHHhhcCCEEEEe--ccCCccccccccHHHHhcCCCCcEEEEcC
Q 020160          201 PDVCELAANSDVLIIC--CALTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       201 ~~l~ell~~aDvV~l~--~P~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      ..+.+.+++||+|+.+  +|.. ....+|+++.++.||||+++||++
T Consensus       106 ~~l~~~l~~aDlVI~talipG~-~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHhhhhheeeeecCCc-ccceeehHHHHHhcCCCcEEEEEe
Confidence            1234568899999865  4433 355689999999999999999986

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.34  E-value=1e-07  Score=77.73  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC-CEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG-CCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      ++|||||+|+||+++++.|...| .+|.+++|+++..      .+.....+.++ +++||+|+++++. ...     .+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP-~~~-----~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKP-QDM-----EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCH-HHH-----HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCH-HHH-----HHh
Confidence            58999999999999999886656 8999999987532      13333344444 5789999999962 222     334


Q ss_pred             HhcCC-CCcEEEEcCCCcccCHHHHHHHHH
Q 020160          232 LLALG-KKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       232 l~~mk-~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      ++.++ .+.++|++.-|-  ..+.+.+.+.
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence            44444 468999887775  4566777764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=3.5e-07  Score=74.61  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----C--C-----CCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----T--Y-----PFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~--~-----~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      +||+|||.|.||..+|..|...|++|..++|+.....     .  .     ....+..+.+..+|+|+++++.. .++..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~-~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc-chHHH
Confidence            6899999999999999999999999999999876422     1  1     01234557788999999999854 55544


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 020160          227 INKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg  247 (330)
                      + +.....+++++.++.+.-|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 3455667788888887665

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.28  E-value=5.7e-07  Score=76.94  Aligned_cols=103  Identities=20%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCCCCCCHHHHhh-cCCEEEEeccCCcccccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYPFYPDVCELAA-NSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~ell~-~aDvV~l~~P~t~~t~~li~  228 (330)
                      +|.|+|++|-|+|++|+.+|+.|..+|++|+++|..+...     .+.. ..+.++++. .||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~-~~~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc-ccCccccccccceeeeccc-----cccccc
Confidence            5899999999999999999999999999999998765321     1222 345677765 699887653     567899


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++..++++- -+++..+.+.+.+++ .-+.|.++.|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            999999974 577777778777764 45677777764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.17  E-value=2.4e-08  Score=77.64  Aligned_cols=90  Identities=21%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-------CCC---CCCCHHHHhhcCCEEEEeccC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------TYP---FYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~~---~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +|..-+++||++.|||.|.+|.+-|+.|..+|++|+++++...+..       ...   ...+ ++.+..+++|+.+.. 
T Consensus         4 ~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~-   81 (113)
T d1pjqa1           4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATD-   81 (113)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCS-
T ss_pred             cceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCC-
Confidence            3445679999999999999999999999999999999987664321       111   1111 345778898887643 


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcC
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      +    ..++.+....+|+..++||+.
T Consensus        82 d----~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          82 D----DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             C----HHHHHHHHHHHHHTTCEEEET
T ss_pred             C----HHHHHHHHHHHHHcCCEEEeC
Confidence            2    235677778888889999974

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=5.7e-07  Score=74.56  Aligned_cols=90  Identities=27%  Similarity=0.309  Sum_probs=70.8

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHhhcCCEEEEeccCCcccccccc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELAANSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  228 (330)
                      -|++|+|+|||||.=|++=|..|+-.|++|++--|.....      .++. ..+++|..++||+|.+.+|...+. .+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~-v~~~~eA~~~aDiim~L~PD~~q~-~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK-VADVKTAVAAADVVMILTPDEFQG-RLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE-EECHHHHHHTCSEEEECSCHHHHH-HHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc-cccHHHHhhhcCeeeeecchHHHH-HHHH
Confidence            3789999999999999999999999999998766644321      1332 458999999999999999965443 3556


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 020160          229 KQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg  247 (330)
                      ++....||+|+.+.= +.|
T Consensus        91 ~~I~p~lk~g~~L~F-aHG  108 (182)
T d1np3a2          91 EEIEPNLKKGATLAF-AHG  108 (182)
T ss_dssp             HHTGGGCCTTCEEEE-SCC
T ss_pred             HhhhhhcCCCcEEEE-ecc
Confidence            678999999988764 344

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.14  E-value=8.2e-07  Score=74.33  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=64.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-------------CCC-------CCCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-------------SVT-------YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~~-------~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++|+|||.|.+|.++|..|...|.+|..|.|..++             ...       .....++++.++.||+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            68999999999999999999999999999874321             000       1123578899999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcc
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRGAI  249 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~~  249 (330)
                      . ...+.++. +....+++. .+|.++.|..
T Consensus        81 s-~~~~~~~~-~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          81 T-DGVLPVMS-RILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             G-GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred             h-hhhHHHHH-hhccccccc-eecccccCcc
Confidence            4 45555543 455566665 5566667654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=3.8e-06  Score=71.35  Aligned_cols=143  Identities=16%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC------------CC-------------CCCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP------------SV-------------TYPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~-------------~~~~~~~l~ell~~aDvV  213 (330)
                      |+|+|||+|.+|..+|..+...|++|++||.+.+.            +.             ......++.+.+..||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            58999999999999999999999999999975431            00             011245788889999999


Q ss_pred             EEeccCCcccc---------cccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCceEEEEe-cCCCCCCC
Q 020160          214 IICCALTDQTH---------HLIN--KQVLLALGKKGVIINVGRGAIIDEKEMVGCL-LR--GEIGGAGLD-VFENEPDV  278 (330)
Q Consensus       214 ~l~~P~t~~t~---------~li~--~~~l~~mk~gailIN~~rg~~vd~~aL~~aL-~~--g~i~ga~lD-V~~~EP~~  278 (330)
                      ++|+|......         ..++  ...++..+++.++|.-|...+=-.+.+..-+ ++  +...+--+. +|.+|=..
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            99998532111         1111  2345567789999998886665555544332 22  222111111 25666554


Q ss_pred             Cc----ccccCCceEEcCCCCCCCHHHHHHH
Q 020160          279 PE----QLFALDNVVLSPHSAVFTPESFKDV  305 (330)
Q Consensus       279 ~~----~L~~~~nvilTPHia~~t~~~~~~~  305 (330)
                      +.    ++...|++|+    |+.+.++.+.+
T Consensus       161 ~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             TTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             ccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            32    3667777765    55565555444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.6e-06  Score=64.55  Aligned_cols=67  Identities=19%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------CCCC-C-CCHHHHhhcCCEEEEeccCCcc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------TYPF-Y-PDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~~~~-~-~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      +++||+|.|+|+|..|.++|+.|...|++|+++|.+..+..      .... . ..-++.+.+.|+|+++ |.-+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S-PGi~~   76 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS-PGIAL   76 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC-TTSCT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC-CCCCC
Confidence            47899999999999999999999999999999988665431      1111 1 1124567888988875 43333

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.3e-06  Score=73.95  Aligned_cols=100  Identities=12%  Similarity=0.147  Sum_probs=74.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CC------------------CCCCCCHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VT------------------YPFYPDVC  204 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~------------------~~~~~~l~  204 (330)
                      ++|+|||.|.||+.+|..+...|++|+.+|++++..                .+                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            699999999999999999999999999999986420                01                  11235777


Q ss_pred             HHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          205 ELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       205 ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      +.++.||+|+=++|.+-+.+.-+-++.-+.++++++|...+.+  +.-..|...+.
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~  138 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATT  138 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhcc
Confidence            8899999999999988776654445555668888887755443  33455555554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.06  E-value=9.4e-07  Score=74.75  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-----------C--CC------CCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----------S--VT------YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~--~~------~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ++|+|||.|.+|.++|..|...|.+|..|.|+++.           .  .+      .....+++++++.||+|++++|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs   87 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   87 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence            57999999999999999999999999999876421           0  11      12245789999999999999984


Q ss_pred             CccccccccHH---H-HhcCCCCcEEEEcCCC
Q 020160          220 TDQTHHLINKQ---V-LLALGKKGVIINVGRG  247 (330)
Q Consensus       220 t~~t~~li~~~---~-l~~mk~gailIN~~rg  247 (330)
                       ...+.++.+-   . ....+++..+|+++.|
T Consensus        88 -~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          88 -QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             -HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             -HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence             3444433211   0 1123567789998877

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.05  E-value=2.7e-05  Score=65.34  Aligned_cols=151  Identities=13%  Similarity=0.045  Sum_probs=97.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----------------------CCCCCCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----------------------TYPFYPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----------------------~~~~~~~l~ell~~aDvV~l  215 (330)
                      |+|+|||+|.+|..+|..+. .|++|+++|.+++...                       ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            58999999999999998774 6999999997753200                       00112344556789999999


Q ss_pred             eccCCccccc-ccc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc----ccc
Q 020160          216 CCALTDQTHH-LIN-------KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE----QLF  283 (330)
Q Consensus       216 ~~P~t~~t~~-li~-------~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~----~L~  283 (330)
                      ++|....... ..+       .+.+...+++.++|.-+.-.+=..+.+..-+.+.++.      |.+|-..+.    .+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9997654332 111       1223345678888888887766677777777666552      567765443    366


Q ss_pred             cCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 020160          284 ALDNVVLSPHSAVFTPESFKDVCELAVANLEAFFS  318 (330)
Q Consensus       284 ~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~  318 (330)
                      ..|++++--+-...  +......+.+++.+.+...
T Consensus       154 ~p~riv~G~~~~~~--~~~~~~~~~~~~l~~~~~~  186 (196)
T d1dlja2         154 YPSRIIVSCEENDS--PKVKADAEKFALLLKSAAK  186 (196)
T ss_dssp             SCSCEEEECCTTSC--HHHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCHhhH--HHHHHHHHHHHHHHHhhhc
Confidence            77888765542222  2344555666666666543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.8e-05  Score=65.13  Aligned_cols=130  Identities=16%  Similarity=0.261  Sum_probs=88.2

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.++.||++.|||-+. +|+.+|..|...|++|+.++...         .++.+.+++||+|+.++..    .++|..+ 
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t---------~~l~~~~~~ADivI~a~G~----p~~i~~~-   97 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------KNLRHHVENADLLIVAVGK----PGFIPGD-   97 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------SCHHHHHHHCSEEEECSCC----TTCBCTT-
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc---------chhHHHHhhhhHhhhhccC----ccccccc-
Confidence            4568999999999987 89999999999999998876532         3688999999999998863    3567654 


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHH
Q 020160          232 LLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVA  311 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~  311 (330)
                        .+|+|+++||+|--.+          ++|++   .-||-..+      ..+ .--.+||=-||.-+=+..-+.+..++
T Consensus        98 --~vk~g~vvIDvGi~~~----------~~~~~---~Gdvd~~~------v~~-~a~~~TPvPGGVGP~Tva~L~~N~v~  155 (166)
T d1b0aa1          98 --WIKEGAIVIDVGINRL----------ENGKV---VGDVVFED------AAK-RASYITPVPGGVGPMTVATLIENTLQ  155 (166)
T ss_dssp             --TSCTTCEEEECCCEEC----------TTSCE---ECSBCHHH------HHH-HCSEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             --ccCCCcEEEecCceec----------CCCCE---EeccccHh------HHh-heeEeCCCCCcccHHHHHHHHHHHHH
Confidence              5689999999975432          23444   24442111      111 12358998888855444344444444


Q ss_pred             HHHHHHc
Q 020160          312 NLEAFFS  318 (330)
Q Consensus       312 nl~~~~~  318 (330)
                      ..+++.+
T Consensus       156 a~~~~~~  162 (166)
T d1b0aa1         156 ACVEYHD  162 (166)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHhC
Confidence            4444443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.3e-05  Score=63.83  Aligned_cols=83  Identities=16%  Similarity=0.303  Sum_probs=66.5

Q ss_pred             ccccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHH
Q 020160          153 GSKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      +.+++||++.|||-+. +|+.+|..|...|++|..++...         .++.+.++++|+++.++...    +++..+ 
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t---------~~l~~~~~~aDivi~a~G~~----~~i~~~-   99 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------AHLDEEVNKGDILVVATGQP----EMVKGE-   99 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------SSHHHHHTTCSEEEECCCCT----TCBCGG-
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc---------ccHHHHHhhccchhhccccc----cccccc-
Confidence            5579999999999976 89999999999999999887642         36788999999999988643    456654 


Q ss_pred             HhcCCCCcEEEEcCCCcccC
Q 020160          232 LLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       232 l~~mk~gailIN~~rg~~vd  251 (330)
                        ..|+|+++||+|--.+.|
T Consensus       100 --~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1         100 --WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             --GSCTTCEEEECCCBC---
T ss_pred             --cccCCCeEeccCcccccc
Confidence              578999999998655444

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=1.4e-05  Score=66.18  Aligned_cols=93  Identities=19%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             CccccCCceEEEEecChH-HHHHHHHHHhCCCEEEEECCCCCCC----CCCC------------CCCCHHHHhhcCCEEE
Q 020160          152 LGSKLGGKRVGIVGLGSI-GSEVAKRLEAFGCCVSYNSRNKKPS----VTYP------------FYPDVCELAANSDVLI  214 (330)
Q Consensus       152 ~~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~----~~~~------------~~~~l~ell~~aDvV~  214 (330)
                      .|.+++||++.|||-+.+ |+.+|..|...|..|+.++......    ....            ..+.+.+...++|+|+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            467899999999998865 9999999999999998776542110    0000            0123677888999999


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcCCCccc
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVGRGAII  250 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~v  250 (330)
                      .++|...   ..+..+   ..|+|+++||+|-....
T Consensus       103 savG~p~---~~i~~d---~ik~GavvIDvGi~~~~  132 (171)
T d1edza1         103 TGVPSEN---YKFPTE---YIKEGAVCINFACTKNF  132 (171)
T ss_dssp             ECCCCTT---CCBCTT---TSCTTEEEEECSSSCCB
T ss_pred             EccCCCc---cccChh---hcccCceEeeccccccc
Confidence            9987542   114433   46899999999966433

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.90  E-value=9.2e-06  Score=69.42  Aligned_cols=86  Identities=20%  Similarity=0.313  Sum_probs=64.9

Q ss_pred             cCC-ceEEEEecChHHHHHHHHHHh------CCCEEEEECCCCCCC------CCCC----CCCCHHHHhhcCCEEEEecc
Q 020160          156 LGG-KRVGIVGLGSIGSEVAKRLEA------FGCCVSYNSRNKKPS------VTYP----FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g-~~vgIiG~G~IG~~~A~~l~~------~G~~V~~~~~~~~~~------~~~~----~~~~l~ell~~aDvV~l~~P  218 (330)
                      ++| |+|+|||||.-|++=|..|+-      .|.+|.+--|...+.      .++.    ...+..|..++||+|.+.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            678 899999999999999999997      557776543333221      2332    13478899999999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEE
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIIN  243 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN  243 (330)
                      ...+.. +. ++....||+|+.+.-
T Consensus       121 De~Q~~-vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 DSAQAD-NY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHHHH-HH-HHHHHHSCTTCEEEE
T ss_pred             hHHHHH-HH-HHHHHhcCCCceeee
Confidence            766544 44 478999999998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.88  E-value=1.4e-06  Score=73.30  Aligned_cols=100  Identities=11%  Similarity=0.067  Sum_probs=72.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCCC------------CCCCHHHHhhcC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTYP------------FYPDVCELAANS  210 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~~------------~~~~l~ell~~a  210 (330)
                      ++|+|||.|.||+.+|..+...|++|..||++++..                .+..            ...+..+.+..|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            589999999999999999999999999999976420                0000            011112347899


Q ss_pred             CEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 020160          211 DVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLL  260 (330)
Q Consensus       211 DvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~  260 (330)
                      |+|+-++|.+-+.+.=+-++.-+.++++++|...+.+-.  ...|.+.+.
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~  132 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALK  132 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCS
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhcc
Confidence            999999998888776555667777899998877655543  455555553

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.86  E-value=4.7e-06  Score=65.68  Aligned_cols=67  Identities=22%  Similarity=0.297  Sum_probs=50.7

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC-----CCC-------CCCCCCHHHH-hhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP-----SVT-------YPFYPDVCEL-AANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~-------~~~~~~l~el-l~~aDvV~l~~P~t~~t~~  225 (330)
                      |++.|+|+|++|+.+|+.|...|.+|+++|.+++.     ..+       ......++++ +.+||.+++++|....+..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            67899999999999999999999999999887542     111       1122345554 7899999999987655543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.64  E-value=3.9e-05  Score=66.48  Aligned_cols=104  Identities=19%  Similarity=0.230  Sum_probs=77.8

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCCCCCHHHHh-hcCCEEEEeccCCcccccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPFYPDVCELA-ANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~ell-~~aDvV~l~~P~t~~t~~l  226 (330)
                      .+|.|+|+.|-|+|++|+.+|+.|...|++|++.|.+....      .+.. ..+.++++ ..||+++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCCcccccccccEecccc-----cccc
Confidence            35899999999999999999999999999999988764321      1222 23455554 5699998764     5677


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          227 INKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      |+.+..+.++- .+++-.+...+.+.++- +.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888874 57788887888877664 556666553

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.50  E-value=0.0001  Score=64.20  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=74.1

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---C--------------------------CCCCCCCCHHH
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---S--------------------------VTYPFYPDVCE  205 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~--------------------------~~~~~~~~l~e  205 (330)
                      +|.|+||.|-|+|++|+.+|+.|...|++|++++.+...   .                          .+.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            589999999999999999999999999999876543210   0                          01111223455


Q ss_pred             Hh-hcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          206 LA-ANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       206 ll-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++ ..||+++-|.     +.+.|+.+..++++- .+++-.+-+.+ ..++ .+.|.++.|.
T Consensus       108 i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         108 IFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            55 4699998775     455788888888864 57788888886 5555 4788888775

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.47  E-value=2.1e-05  Score=63.89  Aligned_cols=84  Identities=17%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC------C--------CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV------T--------YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------~--------~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ++|+|.|||.|.||+.+|+.|...|++|++++|+.....      .        ......+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            479999999999999999999999999999999865311      1        11112455678889999888875433


Q ss_pred             ccccccHHHHhcCCCCcEEEEcC
Q 020160          223 THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~  245 (330)
                      ..     ......+.+..+++++
T Consensus        81 ~~-----~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          81 AT-----VIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             HH-----HHHHHHHHTCEEECSS
T ss_pred             hH-----HHHHHHhhccceeecc
Confidence            21     1122234556677665

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=4.6e-05  Score=62.61  Aligned_cols=90  Identities=13%  Similarity=0.026  Sum_probs=58.6

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC---------CCCCCCCHHH-HhhcCCEEEEeccCCccc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV---------TYPFYPDVCE-LAANSDVLIICCALTDQT  223 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---------~~~~~~~l~e-ll~~aDvV~l~~P~t~~t  223 (330)
                      ..+.||++.|+|.|..+++++..|...|.+|..++|+.++..         ......++++ ....+|+|+.++|..-..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~   93 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG   93 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc
Confidence            357899999999999999999999999999999999865321         1011123333 245689999998866432


Q ss_pred             cccccHHHHhcCCCCcEEEEcC
Q 020160          224 HHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~  245 (330)
                      ..  ...-++.++++.+++++-
T Consensus        94 ~~--~~~~~~~~~~~~~v~D~v  113 (170)
T d1nyta1          94 DI--PAIPSSLIHPGIYCYDMF  113 (170)
T ss_dssp             CC--CCCCGGGCCTTCEEEESC
T ss_pred             CC--CCCcHHHhccCcEEEEee
Confidence            21  111223355555555543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=6.9e-05  Score=57.48  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCC-C------CCCCCHH---HHhh--cCCEEEEeccCCccc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVT-Y------PFYPDVC---ELAA--NSDVLIICCALTDQT  223 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~------~~~~~l~---ell~--~aDvV~l~~P~t~~t  223 (330)
                      ..+.||||+|-|..|+.+|..++.+|+++.++|+++..... .      ..+.+.+   ++..  ++|+|+.      +.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~------E~   82 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVP------EI   82 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEE------CS
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEE------Ee
Confidence            45678999999999999999999999999999988764321 0      1123333   3443  4698854      44


Q ss_pred             cccccHHHHhcC
Q 020160          224 HHLINKQVLLAL  235 (330)
Q Consensus       224 ~~li~~~~l~~m  235 (330)
                      ++ |+.+.++.+
T Consensus        83 En-I~~~~L~~l   93 (111)
T d1kjqa2          83 EA-IATDMLIQL   93 (111)
T ss_dssp             SC-SCHHHHHHH
T ss_pred             cC-cCHHHHHHH
Confidence            44 455666655

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.42  E-value=6.9e-05  Score=61.50  Aligned_cols=81  Identities=22%  Similarity=0.267  Sum_probs=55.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCCCC--CCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHh
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPSVT--YPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLL  233 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  233 (330)
                      ..++||||+|.||+..++.++.. +++++ +++++......  .....+.++++.+.|+|++++|......     -..+
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~-----~a~~   77 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIP-----EQAP   77 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHH-----HHHH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHH-----HHHH
Confidence            35799999999999999999875 56765 56666544322  2234567778889999999998764432     2334


Q ss_pred             cCCCCcEEEE
Q 020160          234 ALGKKGVIIN  243 (330)
Q Consensus       234 ~mk~gailIN  243 (330)
                      .++.|.-+|.
T Consensus        78 aL~aG~~vv~   87 (170)
T d1f06a1          78 KFAQFACTVD   87 (170)
T ss_dssp             HHTTTSEEEC
T ss_pred             HHHCCCcEEE
Confidence            4556655553

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.39  E-value=0.00022  Score=57.65  Aligned_cols=90  Identities=21%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CCC----CCCCHHHHhhcCCEEEEecc
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TYP----FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~~----~~~~l~ell~~aDvV~l~~P  218 (330)
                      +.+||+|||.|.+|+.+|..+...+. ++..+|.++....             +..    ...+.++.++.||+|++++.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46899999999999999988876665 8889987764311             111    12356788999999999874


Q ss_pred             CC--c------cccc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          219 LT--D------QTHH-LI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t--~------~t~~-li--~-------~~~l~~mk~gailIN~~r  246 (330)
                      ..  +      .+|. ++  |       .+.+....|.+++++++.
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            32  1      1331 11  1       122444568899999865

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=0.00014  Score=59.31  Aligned_cols=37  Identities=43%  Similarity=0.549  Sum_probs=33.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            4889999999999999999999999999999887654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.38  E-value=0.0013  Score=58.55  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---CC------------------CC-CCCCCHHHHh-hc
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---SV------------------TY-PFYPDVCELA-AN  209 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~------------------~~-~~~~~l~ell-~~  209 (330)
                      ..+|.|+|+.|=|+|++|+.+|+.|...|++|++++.+...   ..                  .. ....+.++++ ..
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            45699999999999999999999999999999876532210   00                  00 0011223444 47


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ||+++-|.     +.+.|+.+..+.++- .+++-.+.|.+- .++ .+.|.+..|.
T Consensus       111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~t-~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPTT-PQA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCCC-cch-HHHHHHCCCE
Confidence            99988663     567788888888864 478888888864 444 3667777764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00013  Score=60.53  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------C-------CCCCCCHHHHhhcCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------T-------YPFYPDVCELAANSD  211 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~-------~~~~~~l~ell~~aD  211 (330)
                      +.+++|+++.|+|.|..|++++..|...|. ++..++|+++...             .       .....++.+.+..+|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            446899999999999999999999999998 6788888765321             0       000123455678899


Q ss_pred             EEEEeccCC
Q 020160          212 VLIICCALT  220 (330)
Q Consensus       212 vV~l~~P~t  220 (330)
                      +|+.++|..
T Consensus        93 iiIN~Tp~G  101 (182)
T d1vi2a1          93 ILTNGTKVG  101 (182)
T ss_dssp             EEEECSSTT
T ss_pred             eeccccCCc
Confidence            999998865

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00015  Score=58.82  Aligned_cols=102  Identities=20%  Similarity=0.296  Sum_probs=65.7

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccCCccccccccH
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPSV------TYPFYPDVCELAANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      .++||||+|.+|+. ....++.. ++++. ++|+++....      +...+.++++++++.|+|++++|.....+..  .
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~--~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV--S   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH--H
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccc--c
Confidence            47999999999986 56667654 67765 6788765421      3455678999999999999999865433322  2


Q ss_pred             HHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHcCCce
Q 020160          230 QVLLALGKK-GVIINV-GRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       230 ~~l~~mk~g-ailIN~-~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ..   ++.| .+++.- ---++-+...|.++.++.++.
T Consensus        80 ~a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TL---LNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cc---ccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            23   3334 455542 112334555677776666543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=5.9e-05  Score=60.55  Aligned_cols=41  Identities=27%  Similarity=0.464  Sum_probs=36.8

Q ss_pred             CCCccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          150 FPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       150 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      +++..++.||++.|||.|.+|..-|+.|..+|++|+++++.
T Consensus         5 lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             chhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45667899999999999999999999999999999988654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.27  E-value=0.0002  Score=55.18  Aligned_cols=100  Identities=19%  Similarity=0.244  Sum_probs=73.5

Q ss_pred             ceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhc
Q 020160          159 KRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLA  234 (330)
Q Consensus       159 ~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~  234 (330)
                      |+|+|||.    |+.|..+.+.|+..|++|..+++..+...+...+.++.|+-..-|++++++|.. .+..++. +.. .
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~~-~~~~~l~-~~~-~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPK-VGLQVAK-EAV-E   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHH-HHHHHHH-HHH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCHH-HHHHHHH-HHH-h
Confidence            68999994    688999999999999999988877655556667889999989999999999854 3444443 333 3


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          235 LGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       235 mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      +...++++..|   .. .+++.+.+++..+.
T Consensus        79 ~g~k~v~~~~g---~~-~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPG---AE-SEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTT---SC-CHHHHHHHHHHTCE
T ss_pred             cCCceEEeccc---hh-hHHHHHHHHHcCCE
Confidence            45557777643   33 44566777766664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.26  E-value=0.00026  Score=56.32  Aligned_cols=88  Identities=22%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC---------------CCC-CCCCHHHHhhcCCEEEEec--c
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV---------------TYP-FYPDVCELAANSDVLIICC--A  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~---------------~~~-~~~~l~ell~~aDvV~l~~--P  218 (330)
                      +||+|||.|.+|..+|..+...|.  ++..+|..+....               ... ...+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999987774  8999998765311               010 1124456789999999985  3


Q ss_pred             CCcc-ccc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          219 LTDQ-THH-LI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t~~-t~~-li--~-------~~~l~~mk~gailIN~~r  246 (330)
                      ..+. +|. ++  |       .+.+....|.+++++++.
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            3332 121 01  0       123344558899999865

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.21  E-value=0.00019  Score=57.74  Aligned_cols=91  Identities=21%  Similarity=0.388  Sum_probs=58.7

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC------------C---CCCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS------------V---TYPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~------------~---~~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      -.++||+|||.|.+|..+|..+...|.  ++..+|..+...            .   ......+-.+.++.||+|+++.-
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            457899999999999999999987665  799999765421            0   11111233467899999999754


Q ss_pred             CCcc---cc-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          219 LTDQ---TH-HLI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t~~---t~-~li--~-------~~~l~~mk~gailIN~~r  246 (330)
                      ....   +| .++  |       .+.+.+..|.+++|+++.
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            3221   11 111  1       123344567889999843

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.20  E-value=9.1e-05  Score=58.03  Aligned_cols=82  Identities=17%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC------CCCCC----CC---CHHHH-hhcCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS------VTYPF----YP---DVCEL-AANSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~----~~---~l~el-l~~aDvV~l~~P~t~~t~  224 (330)
                      ++|.|+|+|.+|+.+|+.|...|.+|++.|.+++..      .+...    ..   .++++ ++++|.++..++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            589999999999999999999999999998876421      11111    11   23332 5778888877665432  


Q ss_pred             ccccHHHHhcCCCCcEEE
Q 020160          225 HLINKQVLLALGKKGVII  242 (330)
Q Consensus       225 ~li~~~~l~~mk~gailI  242 (330)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            233344555566665554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.18  E-value=0.00046  Score=54.98  Aligned_cols=88  Identities=22%  Similarity=0.347  Sum_probs=54.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------C-CC------CCCCHHHHhhcCCEEEEeccCCc-
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------T-YP------FYPDVCELAANSDVLIICCALTD-  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------~-~~------~~~~l~ell~~aDvV~l~~P~t~-  221 (330)
                      +||+|||.|.+|..+|-.+...|.  ++..+|.......       . ..      ....-.+.++.||+|+++.-... 
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999999887665  8999998765422       0 00      11223456899999999843222 


Q ss_pred             --ccc-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          222 --QTH-HLI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       222 --~t~-~li--~-------~~~l~~mk~gailIN~~r  246 (330)
                        +++ .++  |       .+.+....|.+++|+++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence              111 011  1       122444568899999865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.16  E-value=0.00022  Score=59.34  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             ccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          153 GSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       153 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+.+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            5679999999999 699999999999999999999998764

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.0011  Score=57.16  Aligned_cols=105  Identities=20%  Similarity=0.182  Sum_probs=75.2

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCC------CC---------------CCC--CCCCCHHHHhh
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKK------PS---------------VTY--PFYPDVCELAA  208 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~------~~---------------~~~--~~~~~l~ell~  208 (330)
                      +.++.|+++.|=|+|++|+.+|+.|. ..|++|++++.+..      ..               ...  ....+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            44689999999999999999999994 78999987653221      00               000  11235667766


Q ss_pred             -cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          209 -NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       209 -~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                       .||+++-|.     ..+.|+.+..++++- .+++-.+-+.+- .++ .+.|.++.|.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE
Confidence             799987653     566899999999985 578888888864 444 4778877775

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.05  E-value=0.00045  Score=55.32  Aligned_cols=90  Identities=17%  Similarity=0.242  Sum_probs=56.9

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC-------------C-C-CCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV-------------T-Y-PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~-------------~-~-~~~~~l~ell~~aDvV~l~~P  218 (330)
                      ...+||+|||.|.+|..+|..|...|  -+|..+|+..+...             + . ....+. +-++.||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecc
Confidence            35789999999999999999998766  48999997653210             0 0 112244 45689999999753


Q ss_pred             CCcc---ccc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          219 LTDQ---THH-LI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t~~---t~~-li--~-------~~~l~~mk~gailIN~~r  246 (330)
                      ....   ++. ++  |       .+.+..-.|.+++|+++-
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            2211   111 11  0       123445578889999874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.01  E-value=0.00036  Score=55.90  Aligned_cols=88  Identities=23%  Similarity=0.318  Sum_probs=56.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC--CCCCCHHHHhhcCCEEEEeccCCc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------TY--PFYPDVCELAANSDVLIICCALTD  221 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~~--~~~~~l~ell~~aDvV~l~~P~t~  221 (330)
                      |||+|||.|.+|..+|-.+...|+  ++..+|.......             ..  ....+-.+.++.||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999998886664  8889997654210             00  001122356899999999865322


Q ss_pred             -------cccc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          222 -------QTHH-LI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       222 -------~t~~-li--~-------~~~l~~mk~gailIN~~r  246 (330)
                             .+|. ++  |       .+.+....|.+++|+++-
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence                   1221 11  1       123445578899999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.00  E-value=0.0019  Score=55.80  Aligned_cols=103  Identities=24%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHH-hCCCEEEEECCCCCC---------------------CCCC--CCCCCHHHHh-hc
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLE-AFGCCVSYNSRNKKP---------------------SVTY--PFYPDVCELA-AN  209 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~---------------------~~~~--~~~~~l~ell-~~  209 (330)
                      +|.|+||.|-|+|++|..+|+.|. .+|++|++.+.+...                     ...+  ....+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            489999999999999999999885 689999866443210                     0011  1123556655 46


Q ss_pred             CCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          210 SDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       210 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ||+++-|.     +.+.|+.+..+.++- .+++-.+-+.+-. ++ .+.|.++.|-
T Consensus       109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            99988765     456788888888864 5778888888754 44 4777777775

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00052  Score=57.22  Aligned_cols=64  Identities=20%  Similarity=0.184  Sum_probs=49.5

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-------CCCCCHHHHhhcCCEEEEeccCC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY-------PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~-------~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ..|||.|+| -|.||+.++++|...|++|.++.|++.+..     +.       ....++.+.++.+|+|+.++...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            468999999 699999999999999999999988765321     11       11235667899999999887543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.93  E-value=0.00025  Score=57.38  Aligned_cols=34  Identities=32%  Similarity=0.589  Sum_probs=31.6

Q ss_pred             ceEEEE-ecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          159 KRVGIV-GLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIi-G~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +||+|| |.|.||+++|++|...|++|.+++|+++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999 8999999999999999999999999764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00041  Score=49.52  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      |||||+|-|..|+.++..++.+|+++.++++....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            79999999999999999999999999999987543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.89  E-value=0.00072  Score=54.97  Aligned_cols=92  Identities=14%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CCC--CCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------TYP--FYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~~~--~~~~l~ell~~aDvV~l~~  217 (330)
                      .+..+||+|||.|.+|..+|-.+...|.  ++..+|...+...             ...  ....-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            3567899999999999999999998887  8999998643210             000  0122246789999999975


Q ss_pred             cCC--c-cccc-ccc---------HHHHhcCCCCcEEEEcCC
Q 020160          218 ALT--D-QTHH-LIN---------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~t--~-~t~~-li~---------~~~l~~mk~gailIN~~r  246 (330)
                      -..  + ++|- ++.         ...+....|.+++|+++.
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            432  2 2221 111         112334467889999865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.89  E-value=0.00092  Score=53.99  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.++.|+|.|.||...++.++.+|.+|++.++++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            478999999999999999999999999999988754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.84  E-value=0.0011  Score=52.64  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=73.0

Q ss_pred             CCceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHH
Q 020160          157 GGKRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVL  232 (330)
Q Consensus       157 ~g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l  232 (330)
                      .-|+|+|||.    |+.|..+++.|+.+|++|+.+++......+...+.++.|+-..-|++++++|.. .+..++. +..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~~-e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYVE-QAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHH-HHHHHHH-HHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCHH-HHHHHHH-HHH
Confidence            4689999996    479999999999999999988887655556667889999999999999999854 3344433 333


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 020160          233 LALGKKGVIINVGRGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       233 ~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i  264 (330)
                       .+....++++.|   ..+++. .+.+++..+
T Consensus        96 -~~g~k~v~~~~G---~~~ee~-~~~a~~~gi  122 (139)
T d2d59a1          96 -KKGAKVVWFQYN---TYNREA-SKKADEAGL  122 (139)
T ss_dssp             -HHTCSEEEECTT---CCCHHH-HHHHHHTTC
T ss_pred             -HhCCCEEEEecc---ccCHHH-HHHHHHCCC
Confidence             345667777665   345554 444444444

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.81  E-value=0.0016  Score=52.17  Aligned_cols=90  Identities=20%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CCC---CCCCHHHHhhcCCEEEEeccCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TYP---FYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~~---~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      ..||+|||.|.+|+.+|..+...+. ++..+|.......             ...   ...+..+.++.||+|+++.-..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4699999999999999988876564 7889998664311             111   1123456789999999986532


Q ss_pred             cc---c-----cc-cc--c----HH---HHhcCCCCcEEEEcCCC
Q 020160          221 DQ---T-----HH-LI--N----KQ---VLLALGKKGVIINVGRG  247 (330)
Q Consensus       221 ~~---t-----~~-li--~----~~---~l~~mk~gailIN~~rg  247 (330)
                      ..   +     |- ++  |    ++   .+....|.+++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            21   1     21 11  1    11   23444689999998653

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.81  E-value=0.0013  Score=51.61  Aligned_cols=86  Identities=23%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             ccCCceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCC----------------CCCCCCCCHHHHhh
Q 020160          155 KLGGKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPS----------------VTYPFYPDVCELAA  208 (330)
Q Consensus       155 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~l~ell~  208 (330)
                      ++.+++|||+|+          +.-...+++.|...|++|.+||+.....                .......++++++.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            367899999998          4667889999999999999999742210                01234578999999


Q ss_pred             cCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          209 NSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       209 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                      .||+|+++++.. +.     .+....++++.+++++ ||
T Consensus        90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES-SS
T ss_pred             hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC-CC
Confidence            999999998754 22     2445567778899997 44

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.0012  Score=52.08  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             CCceEEEEec----ChHHHHHHHHHHhCCCEEEEECCCCCCC--CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          157 GGKRVGIVGL----GSIGSEVAKRLEAFGCCVSYNSRNKKPS--VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       157 ~g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      .-|+|+|||.    ++.|..+++.|+.+|+++..+.+++...  .+...+.++.++-..-|++++++|. +.+..++. +
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v~-~   89 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-E   89 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-H
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEeccH-HHHHHHHH-H
Confidence            3579999997    7899999999999999999888765432  3555677899988889999999984 34555543 2


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 020160          231 VLLALGKKGVIINVGRGAIIDEKEMVGCLLRG  262 (330)
Q Consensus       231 ~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g  262 (330)
                      .. .+...++++..|   ..++++...+.++|
T Consensus        90 ~~-~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          90 VL-ALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             HH-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             HH-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            33 346678888654   35565555554544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.00066  Score=53.82  Aligned_cols=88  Identities=26%  Similarity=0.344  Sum_probs=56.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCCCCC--------------CCCCCCCHHHHhhcCCEEEEeccC--C
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKKPSV--------------TYPFYPDVCELAANSDVLIICCAL--T  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~~~--------------~~~~~~~l~ell~~aDvV~l~~P~--t  220 (330)
                      +||+|||.|.+|..+|..+...|  -++..+|.......              ......+..+.++.||+|+++.-.  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999999876544  58999997653211              011122334568999999998532  2


Q ss_pred             cc-cc-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          221 DQ-TH-HLI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       221 ~~-t~-~li--~-------~~~l~~mk~gailIN~~r  246 (330)
                      +. ++ .++  |       .+.+....|++++++++-
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            11 11 111  1       123445678899999864

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.78  E-value=0.00083  Score=54.36  Aligned_cols=85  Identities=18%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             ceEEEEecChHHHH-HHHHHHhCCC-EEE-EECCCCCCC-------CCCC-CCCCHHHHh-----hcCCEEEEeccCCcc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAFGC-CVS-YNSRNKKPS-------VTYP-FYPDVCELA-----ANSDVLIICCALTDQ  222 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~G~-~V~-~~~~~~~~~-------~~~~-~~~~l~ell-----~~aDvV~l~~P~t~~  222 (330)
                      .++||||.|.||+. +.+.++.+.. ++. +.+++....       .+.. ...++++++     .+.|+|++++|...+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 5677776654 554 457665421       1222 233455554     367899999886544


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCC
Q 020160          223 THHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..+   +..++..+.|.++|+-+.
T Consensus        85 ~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHH---HHHHHHHCTTCEEEECST
T ss_pred             HHh---HHHHHHHHcCCEEEEccc
Confidence            443   345666899999999875

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.77  E-value=0.00098  Score=60.62  Aligned_cols=85  Identities=14%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             CceEEEEecChHHHHHHHHHH-hCCC-EEEEECCCCCCC----------CCC--CCCCCHHHHhhcCCEEEEeccCCccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLE-AFGC-CVSYNSRNKKPS----------VTY--PFYPDVCELAANSDVLIICCALTDQT  223 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~~----------~~~--~~~~~l~ell~~aDvV~l~~P~t~~t  223 (330)
                      -++++|||.|..+..-++.+. -++. +|.+|+|++...          .+.  ....++++.++.||+|+.+++. +.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence            469999999999998888664 5665 789999986431          122  2367999999999999988863 445


Q ss_pred             cccccHHHHhcCCCCcEEEEcCC
Q 020160          224 HHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       224 ~~li~~~~l~~mk~gailIN~~r  246 (330)
                      ..++..+   .+|||+.+..+|.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            5677654   5799999988875

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.77  E-value=0.0042  Score=50.13  Aligned_cols=91  Identities=12%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------CCCCCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +|.|+||++||= .++.++++..+..||+++..+.+..-...                ......++++.++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            478999999994 56889999999999999998877432211                1123468899999999988642


Q ss_pred             cCCc------c------ccccccHHHHhcCCCCcEEEEcC
Q 020160          218 ALTD------Q------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 P~t~------~------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      =...      +      ....++.+.++.+|++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            1110      1      12356788899999999998875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.00059  Score=56.12  Aligned_cols=102  Identities=14%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEE-EECCCCCCC------CC----CCCCCCHHHHhh--cCCEEEEeccCCcccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVS-YNSRNKKPS------VT----YPFYPDVCELAA--NSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~------~~----~~~~~~l~ell~--~aDvV~l~~P~t~~t~  224 (330)
                      .++||||+|.+|+..++.++.. +++|. ++|++....      .+    ...+.+++++++  +.|+|++++|.....+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            4799999999999999999876 66776 567764321      11    224578999985  4789999988654433


Q ss_pred             ccccHHHHhcCCCCc-EEEEcC-CCcccCHHHHHHHHHcCCce
Q 020160          225 HLINKQVLLALGKKG-VIINVG-RGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       225 ~li~~~~l~~mk~ga-ilIN~~-rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .     ....++.|. +++.-- --.+-+.+.|.+..++.++.
T Consensus        82 ~-----~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 W-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             H-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             h-----hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            2     333345553 444321 12333445678888877665

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.69  E-value=0.0018  Score=51.30  Aligned_cols=87  Identities=25%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEEEeccC-
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLIICCAL-  219 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~l~~P~-  219 (330)
                      +||+|||.|.+|..+|-.+...+. ++..+|..+....             ..    ....+. +.++.||+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence            699999999999999998876565 8888987664310             10    111233 457999999998743 


Q ss_pred             -Ccc-cc-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          220 -TDQ-TH-HLI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       220 -t~~-t~-~li--~-------~~~l~~mk~gailIN~~r  246 (330)
                       .+. ++ .++  |       .+.+.+-.|.+++++++.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence             221 22 111  1       112334467889998754

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.00087  Score=58.08  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC
Q 020160          196 TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE  275 (330)
Q Consensus       196 ~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  275 (330)
                      +.....+..|.+++||+|++++|..+.+..++ .++.+.+++|++++|+|.........+.+.+....+.  .++-.   
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~--vi~~h---  201 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN--ITSYH---  201 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE--EEECB---
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE--EECCC---
Confidence            44456789999999999999999887788777 5788999999999999999888888888888887765  23332   


Q ss_pred             CCCCcccccCCceEEcCCCCCCCHHHHHHHHHH
Q 020160          276 PDVPEQLFALDNVVLSPHSAVFTPESFKDVCEL  308 (330)
Q Consensus       276 P~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~  308 (330)
                      |...+.. .-..+++   .++.+.|..+.+.+.
T Consensus       202 p~a~pe~-~g~~li~---~~~aseE~iekv~el  230 (242)
T d2b0ja2         202 PGCVPEM-KGQVYIA---EGYASEEAVNKLYEI  230 (242)
T ss_dssp             CSSCTTT-CCCEEEE---ESSSCHHHHHHHHHH
T ss_pred             ccCcCcc-ccceEEe---cCCCCHHHHHHHHHH
Confidence            2111111 1123333   345677766666544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0013  Score=53.36  Aligned_cols=85  Identities=21%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCC-----CCCC-----CCCCHHHHh--------hcCCEEEEec
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPS-----VTYP-----FYPDVCELA--------ANSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-----~~~~-----~~~~l~ell--------~~aDvV~l~~  217 (330)
                      .|.+|.|+|.|.||...++.++.+|. +|++.++++++.     .+..     ...+..+..        ...|+++-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            47799999999999999999999999 799988876431     1221     112333322        2467777766


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEEcCC
Q 020160          218 ALTDQTHHLINKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~t~~t~~li~~~~l~~mk~gailIN~~r  246 (330)
                      .. +.+  +  ...++.++++..++.+|-
T Consensus       106 G~-~~~--~--~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2         106 GA-EAS--I--QAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             CC-HHH--H--HHHHHHSCTTCEEEECSC
T ss_pred             CC-chh--H--HHHHHHhcCCCEEEEEec
Confidence            43 222  1  456677788877777654

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.63  E-value=0.00041  Score=54.38  Aligned_cols=106  Identities=24%  Similarity=0.291  Sum_probs=72.1

Q ss_pred             cCCceEEEEec----ChHHHHHHHHHHhCC-CEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHH
Q 020160          156 LGGKRVGIVGL----GSIGSEVAKRLEAFG-CCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQ  230 (330)
Q Consensus       156 l~g~~vgIiG~----G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  230 (330)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.+++..+...+...+.++.|+-..-|++++++|.. .+..++. +
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~~-~~~~~~~-~   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKR-FVKDTLI-Q   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHH-HHHHHHH-H
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecChH-HhHHHHH-H
Confidence            56689999996    899999999998766 689988887666567777889999989999999999854 4444543 3


Q ss_pred             HHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHcCCc
Q 020160          231 VLLALGKKGVII-NVGRGAI-----IDEKEMVGCLLRGEI  264 (330)
Q Consensus       231 ~l~~mk~gailI-N~~rg~~-----vd~~aL~~aL~~g~i  264 (330)
                      .. ...-.++++ .-+-++.     ..+++|.+..++..+
T Consensus        84 ~~-~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          84 CG-EKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             HH-HHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HH-HcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            33 333344444 3333332     223445555555444

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.63  E-value=0.00055  Score=55.47  Aligned_cols=102  Identities=13%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             ceEEEEecChHHHH-HHHHHHhC-CCEEEEECCCCCCC------CCC-CCCCCHHHHhh-cCCEEEEeccCCcccccccc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAF-GCCVSYNSRNKKPS------VTY-PFYPDVCELAA-NSDVLIICCALTDQTHHLIN  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~~~~~~~~~~------~~~-~~~~~l~ell~-~aDvV~l~~P~t~~t~~li~  228 (330)
                      .++||||+|.+|+. ....++.. +.++.++++++...      .+. ..+.+.+++++ +.|+|++++|........  
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~--   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLA--   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHH--
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccc--
Confidence            48999999999976 56677665 55777888765431      122 23567777775 579999999865444432  


Q ss_pred             HHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCce
Q 020160          229 KQVLLALGKK-GVIINVG-RGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       229 ~~~l~~mk~g-ailIN~~-rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ...++   .| .+++.-- --.+-+...|.++.++.++.
T Consensus        80 ~~al~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLH---LGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHH---TTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccc---cccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333   33 3565431 12334456677777766553

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.00018  Score=59.15  Aligned_cols=39  Identities=18%  Similarity=0.071  Sum_probs=34.8

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+.|+++.|+|.|..|++++..|...+.+|.+++|+.++
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK   53 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH
Confidence            478999999999999999999998878899999998643

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.61  E-value=0.0002  Score=58.96  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC----------CC-----CCCCCHHHHhhcCCEEEEecc
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------TY-----PFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------~~-----~~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+++||++.|+|.|..+++++..|...| +|.+++|+.++..          ..     ....+++..+..+|+++++.|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            3589999999999999999999998887 8999999865421          00     112345556788999999988


Q ss_pred             CC
Q 020160          219 LT  220 (330)
Q Consensus       219 ~t  220 (330)
                      ..
T Consensus        93 ~g   94 (177)
T d1nvta1          93 IG   94 (177)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.61  E-value=0.0025  Score=52.49  Aligned_cols=61  Identities=20%  Similarity=0.202  Sum_probs=41.6

Q ss_pred             eEEEEecChHHHHHHHHHHhC-CCEEEEE-CCCCCCC-----------------------CCCCCCCCHHHHhhcCCEEE
Q 020160          160 RVGIVGLGSIGSEVAKRLEAF-GCCVSYN-SRNKKPS-----------------------VTYPFYPDVCELAANSDVLI  214 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~-~~~~~~~-----------------------~~~~~~~~l~ell~~aDvV~  214 (330)
                      +|||.|||+||+.+++.+... +++|.+. ++.+...                       .+.....++.+++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999865 4677654 4433210                       01112335677777888888


Q ss_pred             EeccCC
Q 020160          215 ICCALT  220 (330)
Q Consensus       215 l~~P~t  220 (330)
                      -|+|.-
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            887754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.58  E-value=0.0023  Score=55.80  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=65.4

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---CCCCCC----------------------------CCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---SVTYPF----------------------------YPD  202 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~----------------------------~~~  202 (330)
                      .+|.|+|+.|=|+|++|+.+|+.|...|++|++.+.+...   ..+...                            ..+
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            4589999999999999999999999999999765432110   001000                            001


Q ss_pred             HHHH-hhcCCEEEEeccCCccccccccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          203 VCEL-AANSDVLIICCALTDQTHHLINKQVLLALGK-KG-VIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       203 l~el-l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~-ga-ilIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .+++ -..||+++-|     .+.+.|+.+..+.++. ++ +++--+-+.+-++ +....|+++.|.
T Consensus       112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            1122 2458877644     4566777777777653 33 6666666665544 434446665553

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00049  Score=55.80  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=32.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            488999999999999999999999999988877654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.51  E-value=0.0015  Score=58.90  Aligned_cols=83  Identities=17%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             CceEEEEecChHHHHHHHHHHh-CCC-EEEEECCCCCCC---------CCCCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA-FGC-CVSYNSRNKKPS---------VTYPFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~~---------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      -+++||||.|..++.-++.+.. +.. +|.+|+|+++..         .+.....+.++.+..||+|+.++|.   +..+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---cccc
Confidence            3689999999999999988764 665 789999986532         1223345677889999999988764   4556


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 020160          227 INKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~r  246 (330)
                      +..+   .++||+.++.+|.
T Consensus       202 ~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             BCGG---GCCTTCEEEECSC
T ss_pred             cchh---hcCCCCeEeecCC
Confidence            7654   5799999999975

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.43  E-value=0.0029  Score=50.10  Aligned_cols=88  Identities=18%  Similarity=0.197  Sum_probs=56.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC-C--CCCCHHHHhhcCCEEEEecc--
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------TY-P--FYPDVCELAANSDVLIICCA--  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~~-~--~~~~l~ell~~aDvV~l~~P--  218 (330)
                      +||+|||.|.+|..+|-.+...|.  ++..+|..++...             .. .  ...+-.+.+++||+|++..-  
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            589999999999999999886664  7888987653210             11 0  11122468999999998864  


Q ss_pred             CCcc-cc-ccc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          219 LTDQ-TH-HLI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 ~t~~-t~-~li--~-------~~~l~~mk~gailIN~~r  246 (330)
                      .++. ++ .++  |       .+.+....|.+++++++.
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            2221 11 011  1       123444567899999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.0013  Score=52.32  Aligned_cols=93  Identities=17%  Similarity=0.240  Sum_probs=59.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCC-----C---------CCCCCCHHHHhhcCCEEEEeccC--
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-----T---------YPFYPDVCELAANSDVLIICCAL--  219 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-----~---------~~~~~~l~ell~~aDvV~l~~P~--  219 (330)
                      .||+|||. |.+|+.+|..+...|.  ++..+|.......     .         .....+..+.++.||+|+++.-.  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            38999995 9999999999997776  6778887543210     0         01124567889999999987542  


Q ss_pred             Cc-cccc-ccc---------HHHHhcCCCCcEEEEcCCCcccCHH
Q 020160          220 TD-QTHH-LIN---------KQVLLALGKKGVIINVGRGAIIDEK  253 (330)
Q Consensus       220 t~-~t~~-li~---------~~~l~~mk~gailIN~~rg~~vd~~  253 (330)
                      .+ ++|. ++.         .+.+....|.++++.++.  .+|.-
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~~  123 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNST  123 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhhh
Confidence            22 1221 111         122344478899999854  45543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.0012  Score=54.02  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=32.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            58999999999999999999999998 7898888653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.30  E-value=0.0024  Score=50.70  Aligned_cols=91  Identities=16%  Similarity=0.273  Sum_probs=57.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCCC-------------CC---CCCCCHHHHhhcCCEEEEeccCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV-------------TY---PFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~-------------~~---~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      .||+|||.|.+|..+|-.+...|.  ++..+|..+....             +.   ....+. +.++.||+|+++.-..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            489999999999999998876665  8999997654211             00   012233 5688999999986322


Q ss_pred             --c-ccc-ccc--c-------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160          221 --D-QTH-HLI--N-------KQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       221 --~-~t~-~li--~-------~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                        + .+| .++  |       ...+....|.+++++++  ..+|.
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvDv  123 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVDI  123 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchHH
Confidence              1 111 111  1       12344457888999886  44543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.00071  Score=55.09  Aligned_cols=61  Identities=18%  Similarity=0.321  Sum_probs=43.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCCCC------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKPSV------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      .+++|.|+|.|..|++++..|+..|+ +|..++|+.+...      +.....++  -..++|+|+.++|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheecccc
Confidence            57899999999999999999999998 7899999865321      11111111  12457777777764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.22  E-value=0.00097  Score=53.70  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=32.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            488999999999999999999999999999988654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.0014  Score=53.82  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             ceEEEEecChHHHH-HHHHHHhCC--CEEE-EECCCCCCCC------CC-CCCCCHHHHhhc--CCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSE-VAKRLEAFG--CCVS-YNSRNKKPSV------TY-PFYPDVCELAAN--SDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~-~A~~l~~~G--~~V~-~~~~~~~~~~------~~-~~~~~l~ell~~--aDvV~l~~P~t~~t~~  225 (330)
                      .++||||+|.+|+. .+..++.++  ++|. ++|+++....      +. ..+.+++|+++.  .|+|++++|.....+.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~   83 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   83 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence            47999999999987 477777654  4665 5777654311      22 236789999864  7899999986544332


Q ss_pred             cccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCce
Q 020160          226 LINKQVLLALGKK-GVIINVG-RGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       226 li~~~~l~~mk~g-ailIN~~-rg~~vd~~aL~~aL~~g~i~  265 (330)
                      .  ...++   .| .+++.-- --++-+..+|.+..++....
T Consensus        84 ~--~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          84 I--EKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             H--HHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             c--ccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            2  33333   33 4555431 12334455677777665543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.99  E-value=0.0014  Score=52.58  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.||...++.++..|.+|++.++++.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            478999999999999999999999999999887654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.96  E-value=0.0044  Score=50.60  Aligned_cols=30  Identities=33%  Similarity=0.367  Sum_probs=24.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC-CEEEEEC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG-CCVSYNS  188 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~  188 (330)
                      ++|||-|||+||+.+.+.+...+ ++|...+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaIn   32 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEe
Confidence            58999999999999999887654 6765443

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.017  Score=46.59  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=64.8

Q ss_pred             ccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEec
Q 020160          155 KLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       155 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~~  217 (330)
                      +|.|+||++||=| ++-++++..+..||+++.+..+..-...              +  .....++++.+..+|+|..-.
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999965 4667777778889999988776432211              1  223568999999999998765


Q ss_pred             cCCcc------------ccccccHHHHhcCCCCcEEEEcC
Q 020160          218 ALTDQ------------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       218 P~t~~------------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .....            ....++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            43221            12345677888889999888875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.90  E-value=0.0017  Score=53.06  Aligned_cols=36  Identities=17%  Similarity=0.186  Sum_probs=32.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            48899999999999999999999998 6888888654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0039  Score=50.32  Aligned_cols=90  Identities=24%  Similarity=0.365  Sum_probs=58.3

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC--EEEEECCCCCCC-------------CCCC---CCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC--CVSYNSRNKKPS-------------VTYP---FYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-------------~~~~---~~~~l~ell~~aDvV~l~~  217 (330)
                      +...||+|||.|.+|..+|..+...|.  ++..+|......             .+..   ...+ .+.++.||+|+++.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEec
Confidence            556799999999999999999987775  799999765321             0110   1123 35669999999875


Q ss_pred             cC--Cc-ccc-ccc--cHHH-------HhcCCCCcEEEEcCC
Q 020160          218 AL--TD-QTH-HLI--NKQV-------LLALGKKGVIINVGR  246 (330)
Q Consensus       218 P~--t~-~t~-~li--~~~~-------l~~mk~gailIN~~r  246 (330)
                      -.  .+ .+| .++  |.+.       +....|++++++++.
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            32  22 122 122  1121       334578899999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.007  Score=47.97  Aligned_cols=92  Identities=20%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHH---hCCCEEEEECCCCCCC--------CCCC------CCCCHHHHhhcCCEEEEecc--
Q 020160          159 KRVGIVGL-GSIGSEVAKRLE---AFGCCVSYNSRNKKPS--------VTYP------FYPDVCELAANSDVLIICCA--  218 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~---~~G~~V~~~~~~~~~~--------~~~~------~~~~l~ell~~aDvV~l~~P--  218 (330)
                      +||+|||. |.+|+.+|-.+.   .++-++..+|..+...        ....      ...+..+.++.||+|+++.-  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998764   3456898888754210        0000      11233467899999999863  


Q ss_pred             CCcc-cc-cccc---------HHHHhcCCCCcEEEEcCCCcccCH
Q 020160          219 LTDQ-TH-HLIN---------KQVLLALGKKGVIINVGRGAIIDE  252 (330)
Q Consensus       219 ~t~~-t~-~li~---------~~~l~~mk~gailIN~~rg~~vd~  252 (330)
                      ..+. +| .++.         .+.+....|.+++|.++.  .+|.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~  123 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNT  123 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchH
Confidence            2222 21 1221         223444578899999864  4554

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.75  E-value=0.017  Score=45.86  Aligned_cols=90  Identities=13%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCCCEEEEE-CCCCCCC-------C--CCCCCCCHHHHhhcCCEEEEeccCCc-
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYN-SRNKKPS-------V--TYPFYPDVCELAANSDVLIICCALTD-  221 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~-~~~~~~~-------~--~~~~~~~l~ell~~aDvV~l~~P~t~-  221 (330)
                      |.|+||++||=   |++.++++..+..||+++.++ .+...+.       .  ......++++.++++|+|..---... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999995   569999999999999987544 3322111       1  12335688999999998875321110 


Q ss_pred             ----------cccccccHHHHhcCCCCcEEEEcC
Q 020160          222 ----------QTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       222 ----------~t~~li~~~~l~~mk~gailIN~~  245 (330)
                                .....++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      012245777888888888888774

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.0039  Score=50.34  Aligned_cols=60  Identities=12%  Similarity=0.081  Sum_probs=41.2

Q ss_pred             ceEEEEecChHHHHHHHH--HHh---C-CCEEEEECCCCCCCC------------C--CCCCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKR--LEA---F-GCCVSYNSRNKKPSV------------T--YPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~--l~~---~-G~~V~~~~~~~~~~~------------~--~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      +||.|||.|++|...+-.  ++.   + +-++..+|..+....            .  .....+.++.++.||+|++++-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            589999999998776643  222   2 347889998654311            1  1123577889999999999864

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.59  E-value=0.026  Score=44.67  Aligned_cols=102  Identities=21%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhC----CCEEEEECCCCCC--CCCCC-----CC-CCHHHHhhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAF----GCCVSYNSRNKKP--SVTYP-----FY-PDVCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~----G~~V~~~~~~~~~--~~~~~-----~~-~~l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      ++||||| -|-.|+++.++|...    ..++..+..+...  .....     .. ..-.+.++++|++++|+|.... ..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s-~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYT-EK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHH-HH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHH-HH
Confidence            5899999 699999999987542    2455544332211  11110     01 1123567999999999996533 32


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHcCC
Q 020160          226 LINKQVLLALGKKGVIINVGRGAI-----------IDEKEMVGCLLRGE  263 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~-----------vd~~aL~~aL~~g~  263 (330)
                      +  ...+..-...+++|+.|.--=           ++.+.+.++++.|.
T Consensus        80 ~--~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 V--YPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             H--HHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             H--hHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            3  222333344467888875321           34445556665543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.56  E-value=0.0072  Score=49.30  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=23.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSYN  187 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~  187 (330)
                      .+|||.|||+||+.+++.+... .++|...
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaI   32 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGI   32 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            5899999999999999988754 4676544

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.53  E-value=0.005  Score=49.76  Aligned_cols=103  Identities=18%  Similarity=0.089  Sum_probs=58.5

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC----CEEEEE-CCCCCCCCCCCCCCCHHHHhhc--CCEEEEeccCCccccccccHHH
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG----CCVSYN-SRNKKPSVTYPFYPDVCELAAN--SDVLIICCALTDQTHHLINKQV  231 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~-~~~~~~~~~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~  231 (330)
                      .+|||||+|.+|+..++.++...    ..+... ++............+++|++..  .|+|++++|.......  -...
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~--~~~a   85 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY--IRQF   85 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH--HHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhcccccccccc--cccc
Confidence            48999999999999888876432    233322 2222111122224589999865  5789999886544322  2334


Q ss_pred             HhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCce
Q 020160          232 LLALGKKGVIINVG-RGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       232 l~~mk~gailIN~~-rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ++.=|  .+++.-- --++-+.++|.+..++.+..
T Consensus        86 l~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          86 LQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            44322  3665531 12445566677765555543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0084  Score=45.80  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      +++.|||.|.||-++|..+..+|++|+.+.+.+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            69999999999999999999999999999887654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.017  Score=45.75  Aligned_cols=101  Identities=17%  Similarity=0.249  Sum_probs=59.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhC---C-CEEEEECCCCCCCC--CC----CCC-CC-HHHHhhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAF---G-CCVSYNSRNKKPSV--TY----PFY-PD-VCELAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~---G-~~V~~~~~~~~~~~--~~----~~~-~~-l~ell~~aDvV~l~~P~t~~t~~  225 (330)
                      |+|||||. |.+|+.+.++|..-   - .++.+...+.....  ..    ... .. -.+.++.+|++++++|.....+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~-   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNE-   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHH-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHH-
Confidence            58999996 99999999876432   2 35555544332211  00    011 11 1235789999999998654322 


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHcC
Q 020160          226 LINKQVLLALGKKGVIINVGRGAI-----------IDEKEMVGCLLRG  262 (330)
Q Consensus       226 li~~~~l~~mk~gailIN~~rg~~-----------vd~~aL~~aL~~g  262 (330)
                      +  ...+..-..+.++|+.|.--=           |+.+.|..++++|
T Consensus        81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            2  233333344567888875433           2445677777764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.48  E-value=0.0084  Score=45.51  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=32.8

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+++.|||.|.+|-++|..++.+|.+|+.+.+....
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            479999999999999999999999999999887654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0056  Score=49.46  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            5889999995 9999999999999999998877654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.44  E-value=0.0033  Score=50.97  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|++|.|.|. |.+|+...+.++.+|++|++.+++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            4889999995 99999999999999999998877654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.43  E-value=0.0083  Score=45.22  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+++.|||.|.+|-++|..+..+|.+|+.+.+.+.-
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            379999999999999999999999999988876653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.25  E-value=0.0068  Score=48.98  Aligned_cols=37  Identities=14%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCE-EEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCC-VSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~  193 (330)
                      .+|+|.|||.|..|-..|..|+..|++ |+++++.+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            589999999999999999999999995 9888886543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.012  Score=44.39  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=32.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      +++.|||.|.+|-++|..++.+|.+|+.+.+.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999887654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.24  E-value=0.0095  Score=50.02  Aligned_cols=35  Identities=31%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ||+|.|||.|.-|-..|..|+..|++|+++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            69999999999999999999999999999987643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0047  Score=48.87  Aligned_cols=78  Identities=8%  Similarity=-0.034  Sum_probs=49.2

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC---------CCCCCC----CCC---HHH-HhhcCCEEEEeccCCcc
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP---------SVTYPF----YPD---VCE-LAANSDVLIICCALTDQ  222 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------~~~~~~----~~~---l~e-ll~~aDvV~l~~P~t~~  222 (330)
                      .+-|+|+|.+|+.+++.|...|.+|++.+..++.         ..++..    ..+   |++ -+.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            5899999999999999999999999888776531         011110    112   222 25678888887765433


Q ss_pred             ccccccHHHHhcCCCCc
Q 020160          223 THHLINKQVLLALGKKG  239 (330)
Q Consensus       223 t~~li~~~~l~~mk~ga  239 (330)
                      +  +.-....+.+.|..
T Consensus        85 n--~~~~~~~r~~~~~~   99 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDV   99 (153)
T ss_dssp             H--HHHHHHHHHHTSSS
T ss_pred             H--HHHHHHHHHhCCCC
Confidence            3  22233444554543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.0047  Score=50.31  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=42.1

Q ss_pred             CceEEEEecChHHHHHHH---HHH--hC-CCEEEEECCCCCCCC-------------C----CCCCCCHHHHhhcCCEEE
Q 020160          158 GKRVGIVGLGSIGSEVAK---RLE--AF-GCCVSYNSRNKKPSV-------------T----YPFYPDVCELAANSDVLI  214 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~---~l~--~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~ell~~aDvV~  214 (330)
                      ++||+|||.|++|...+-   .++  .+ +-++..+|..++...             +    .....+.+|.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            579999999999976432   332  33 358999999764310             1    112358899999999999


Q ss_pred             Eec
Q 020160          215 ICC  217 (330)
Q Consensus       215 l~~  217 (330)
                      ++.
T Consensus        82 ~~~   84 (171)
T d1obba1          82 NTA   84 (171)
T ss_dssp             ECC
T ss_pred             eec
Confidence            875

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.16  E-value=0.025  Score=42.23  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=46.2

Q ss_pred             CceEEEEec----------ChHHHHHHHHHHhCCCEEEEECCCCCCCC---CCCCCCCHHHHhhcCCEEEEe
Q 020160          158 GKRVGIVGL----------GSIGSEVAKRLEAFGCCVSYNSRNKKPSV---TYPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       158 g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~---~~~~~~~l~ell~~aDvV~l~  216 (330)
                      .|+|||+|+          ..-.-.+.+.|+..|++|.+|||......   ......++++++..||+|++.
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~   86 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTN   86 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEc
Confidence            368999997          45667899999999999999999875532   223356899999999977653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.14  E-value=0.017  Score=43.47  Aligned_cols=38  Identities=21%  Similarity=0.098  Sum_probs=34.1

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ..++++.|||.|.||-++|..|+.+|.+|..+.+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            35799999999999999999999999999999887644

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.12  E-value=0.023  Score=44.69  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=53.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCC--EEEEECCCCCCC--------------C-C-CC-CCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGC--CVSYNSRNKKPS--------------V-T-YP-FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~--------------~-~-~~-~~~~l~ell~~aDvV~l~~P  218 (330)
                      .||+||| .|.+|+.+|-.+...|.  ++..+|......              . . .. ...+. +.++.||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            3899999 69999999999987766  788888532210              0 0 00 11233 45689999998753


Q ss_pred             --CCcc-ccc-cc--c-------HHHHhcCCCCcEEEEcCC
Q 020160          219 --LTDQ-THH-LI--N-------KQVLLALGKKGVIINVGR  246 (330)
Q Consensus       219 --~t~~-t~~-li--~-------~~~l~~mk~gailIN~~r  246 (330)
                        ..+. +|- ++  |       .+.+....|.++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence              2221 211 11  1       223455678899998854

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.11  E-value=0.0031  Score=53.44  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=59.6

Q ss_pred             CCceEEEEecChHHHH-HHHHHHhC-CCEEE-EECCCCCCCC------C-----CCCCCCHHHHhh--cCCEEEEeccCC
Q 020160          157 GGKRVGIVGLGSIGSE-VAKRLEAF-GCCVS-YNSRNKKPSV------T-----YPFYPDVCELAA--NSDVLIICCALT  220 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~~~------~-----~~~~~~l~ell~--~aDvV~l~~P~t  220 (330)
                      +--+|||||+|.+|+. ++..++.. +++|. ++|++++...      +     ...+.+++++++  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            3458999999999974 56666654 67776 6787654311      1     123578899886  478999998855


Q ss_pred             ccccccccHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHcCCc
Q 020160          221 DQTHHLINKQVLLALGKK-GVIINVG-RGAIIDEKEMVGCLLRGEI  264 (330)
Q Consensus       221 ~~t~~li~~~~l~~mk~g-ailIN~~-rg~~vd~~aL~~aL~~g~i  264 (330)
                      .+..     -....|+.| .+++.-- -..+-+...|.+..++...
T Consensus       112 ~H~~-----~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         112 LHAE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             GHHH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             hhhh-----HHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            3322     223334444 3343321 1233334455555554433

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.06  E-value=0.025  Score=45.71  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=32.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      .|.+|.|+|.|.||...++.++.+|. +|++.++++.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            58899999999999999999999998 57778876643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.015  Score=44.48  Aligned_cols=35  Identities=40%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      |++.|||.|.||-++|..++.+|.+|+.+.+...-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            78999999999999999999999999999887643

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.97  E-value=0.026  Score=44.73  Aligned_cols=63  Identities=16%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCCCEEEEECCCCCCCC------------CCCCCCCHHHHhhcCCEEEEecc
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYNSRNKKPSV------------TYPFYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~l~ell~~aDvV~l~~P  218 (330)
                      |.|+||++||=   +++.++++..+..||+++..+.+......            ......++++.++.+|+|....-
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            68999999996   78999999999999999988776432211            11235689999999998876543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.96  E-value=0.014  Score=44.26  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+++.|||.|.||-++|..++.+|.+|+...+....
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            478999999999999999999999999988776543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.94  E-value=0.023  Score=45.96  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=33.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|++.++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            58899999999999999999999995 89999987654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.15  Score=42.92  Aligned_cols=122  Identities=17%  Similarity=0.185  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC----
Q 020160          117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK----  191 (330)
Q Consensus       117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~----  191 (330)
                      +|=.+++-+|+.+|-.                    ++.|+..++.|.|.|.-|-.+|+.+...|. +++.+|+..    
T Consensus         5 TaaV~LAgll~a~~~~--------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~   64 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT--------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNE   64 (222)
T ss_dssp             HHHHHHHHHHHHHHHH--------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCT
T ss_pred             HHHHHHHHHHHHHHHh--------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEc
Confidence            4555677777766652                    346889999999999999999999988787 577777652    


Q ss_pred             -CC---CC-----------CCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 020160          192 -KP---SV-----------TYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEMV  256 (330)
Q Consensus       192 -~~---~~-----------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL~  256 (330)
                       +.   ..           ......++.+.+..++++...-     +.+++.++.+..|.+..++.=.|...---|.+  
T Consensus        65 ~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--  137 (222)
T d1vl6a1          65 NDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--  137 (222)
T ss_dssp             TSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--
T ss_pred             CcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--
Confidence             10   00           1122457889999999776542     57788889999999999999998876544443  


Q ss_pred             HHHHcCCce
Q 020160          257 GCLLRGEIG  265 (330)
Q Consensus       257 ~aL~~g~i~  265 (330)
                      .+-..|+..
T Consensus       138 ~a~~~G~ai  146 (222)
T d1vl6a1         138 LAREAGAFI  146 (222)
T ss_dssp             HHHHTTCSE
T ss_pred             hheeccceE
Confidence            344567654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.92  E-value=0.011  Score=45.10  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      +++.|||.|.||-++|..++.+|.+|+.+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.91  E-value=0.0092  Score=45.59  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS  194 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~  194 (330)
                      .+++.|||.|-||-++|..+..+|++|+...+.+...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            4799999999999999999999999999998876543

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.81  E-value=0.046  Score=44.67  Aligned_cols=91  Identities=9%  Similarity=-0.012  Sum_probs=63.3

Q ss_pred             ccCCceEEEEe-c-ChHHHHHHHHHHhCCCEEEEECCCCCCCC----------------CCCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVG-L-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV----------------TYPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG-~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~l~ell~~aDvV~l~  216 (330)
                      .|.|.||++|| . -++..+++..+..||+++.+..+..-...                ......++++.++.+|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            47899999999 4 58999999999999999998877431110                122356899999999998765


Q ss_pred             ccCCcc--c------------cccccHHHHhcCCCCcEEEEcC
Q 020160          217 CALTDQ--T------------HHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       217 ~P~t~~--t------------~~li~~~~l~~mk~gailIN~~  245 (330)
                      .=.+..  .            ..+.+...+..+|++++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            421111  0            1122344455678999998875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.76  E-value=0.02  Score=43.63  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=33.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .++++.|||.|.+|-++|..++.+|.+|+.+.+.+..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4789999999999999999999999999999876543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.75  E-value=0.018  Score=43.76  Aligned_cols=36  Identities=33%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ++++.|||.|.+|-++|..|+..|.+|+.+.+.+..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            689999999999999999999999999999887654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=94.74  E-value=0.02  Score=45.49  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=46.9

Q ss_pred             CCceEEEEec---ChHHHHHHHHHHhCCCEEEEECCCCCCC--CCCCCCCCHHHHhhcCCEEEEe
Q 020160          157 GGKRVGIVGL---GSIGSEVAKRLEAFGCCVSYNSRNKKPS--VTYPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       157 ~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~  216 (330)
                      .|.+|++||=   +++.++++..+..||+++....+..-..  .......++++.++.+|+|..-
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeee
Confidence            5899999995   6899999999999999998776643221  1233456889999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.025  Score=46.21  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ....+|+|.|||.|..|-+.|..|+..|++|+.+++.+..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            4467899999999999999999999999999999987643

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.009  Score=48.23  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhC-CCEEE-EECCCCCCCC-------------CCCCCCCHHHHhhcCCEEEEec
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAF-GCCVS-YNSRNKKPSV-------------TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~~~~~-------------~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      ..+|+|+|+ |+||+++++.+... ++++. ++++...+..             +.....++++++..+|+|+=-.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence            358999995 99999999988754 67764 5565433211             1122456777888999887543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.011  Score=50.35  Aligned_cols=39  Identities=21%  Similarity=0.208  Sum_probs=34.5

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++|+||++-|-|. +.||+++|++|...|++|+..+++.+
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4689999999995 56999999999999999999888654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.61  E-value=0.0068  Score=49.05  Aligned_cols=35  Identities=11%  Similarity=0.097  Sum_probs=29.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEE-EEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCV-SYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~  191 (330)
                      .|.+|.|+|.|.||...++.++.+|.++ ++.++++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            5889999999999999999999999965 4556544

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.52  E-value=0.02  Score=46.30  Aligned_cols=61  Identities=10%  Similarity=-0.012  Sum_probs=41.2

Q ss_pred             ceEEEEecChHH--HHHHHHHHh---CC-CEEEEECCCCCCCC---------------CC----CCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGLGSIG--SEVAKRLEA---FG-CCVSYNSRNKKPSV---------------TY----PFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~G~IG--~~~A~~l~~---~G-~~V~~~~~~~~~~~---------------~~----~~~~~l~ell~~aDvV  213 (330)
                      +||.|||.|+.|  ..++..++.   +. -++..+|.......               +.    ....+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            589999999776  455555543   22 37888998654210               11    1235678889999999


Q ss_pred             EEeccC
Q 020160          214 IICCAL  219 (330)
Q Consensus       214 ~l~~P~  219 (330)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999854

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.48  E-value=0.018  Score=44.15  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=32.7

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+++.|||.|-||-++|..++.+|.+|+.+.+.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            479999999999999999999999999999887643

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.021  Score=45.59  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             cCCceEEEEe-c-ChHHHHHHHHHHhCCCEEEEECCCCC-CCC---------------CCCCCCCHHHHhhcCCEEEEec
Q 020160          156 LGGKRVGIVG-L-GSIGSEVAKRLEAFGCCVSYNSRNKK-PSV---------------TYPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG-~-G~IG~~~A~~l~~~G~~V~~~~~~~~-~~~---------------~~~~~~~l~ell~~aDvV~l~~  217 (330)
                      |.|++|++|| . .++-++++..+..||+++..+.+..- +..               ......++++.++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            5799999999 4 58999999999999999988776431 110               1223568999999999998754


Q ss_pred             cCCcc------------ccc-cccHHHHhcCCCCcEEEEcC---CCcccCH
Q 020160          218 ALTDQ------------THH-LINKQVLLALGKKGVIINVG---RGAIIDE  252 (330)
Q Consensus       218 P~t~~------------t~~-li~~~~l~~mk~gailIN~~---rg~~vd~  252 (330)
                      -....            ... ..+......+|++++|.-+.   ||.=|+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~  131 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  131 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccch
Confidence            32111            011 22333444578888888774   4544443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.45  E-value=0.0082  Score=44.14  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCceEEEEecChHH-HHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGLGSIG-SEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG-~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.+++=+||.|.+| +++|+.|+..|++|.++|...
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            57899999999999 677999999999999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.031  Score=51.87  Aligned_cols=80  Identities=15%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC-------------CC-----------------CCC------
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP-------------SV-----------------TYP------  198 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~-----------------~~~------  198 (330)
                      |++++|.|||+|.+|..+++.|...|. ++..+|...-.             ..                 ...      
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678899999999999999999998887 67777653211             00                 000      


Q ss_pred             -CCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCC
Q 020160          199 -FYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALG  236 (330)
Q Consensus       199 -~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk  236 (330)
                       .....+++++++|+|+.++- +.+++..++...+...+
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence             01123568899999987764 56778888877665443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.38  E-value=0.0072  Score=47.92  Aligned_cols=59  Identities=24%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCC--------------C-CCCC-----CCCHHHHhhcCCEEEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPS--------------V-TYPF-----YPDVCELAANSDVLII  215 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~--------------~-~~~~-----~~~l~ell~~aDvV~l  215 (330)
                      +||+|||. |.+|+.+|..+...|.  ++..+|..+...              . ....     ..+-.+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999988885  888888764210              0 0000     1223467889999999


Q ss_pred             ec
Q 020160          216 CC  217 (330)
Q Consensus       216 ~~  217 (330)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.36  E-value=0.024  Score=43.00  Aligned_cols=35  Identities=31%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++++.|||.|.+|-++|..|+.+|.+|+.+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            47899999999999999999999999999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.32  E-value=0.023  Score=44.63  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~  192 (330)
                      .||+|.|||.|.+|-++|..|+..|  .+|+.+++.+.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            4899999999999999999999877  57888887653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.037  Score=47.06  Aligned_cols=37  Identities=35%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|.||++-|.|. +.||+++|++|...|++|+..+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999995 5799999999999999999998864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.14  E-value=0.025  Score=42.34  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             CceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+++.|||.|.+|-++|..++.+|.+|+.+.+.+.-
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            479999999999999999999999999999887653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.10  E-value=0.035  Score=42.75  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .++++.|||-|.+|-++|..++..|.+|+.+.+.+..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3689999999999999999999999999999987654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.0098  Score=51.21  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=35.0

Q ss_pred             ccccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          153 GSKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       153 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |..|.||++-|-|. +.||+++|++|...|++|+..+|+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45689999999995 7899999999999999999998864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.06  E-value=0.012  Score=50.92  Aligned_cols=37  Identities=30%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +|+||++-|.| -+.||+++|++|...|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999 67799999999999999999998865

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.01  E-value=0.23  Score=40.10  Aligned_cols=92  Identities=24%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEE-CCCCCCCC---------C--CCCCCCHHHHhhcCCEEEEeccCCcccc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYN-SRNKKPSV---------T--YPFYPDVCELAANSDVLIICCALTDQTH  224 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~-~~~~~~~~---------~--~~~~~~l~ell~~aDvV~l~~P~t~~t~  224 (330)
                      .+|||+| -|-.|+++.+.|...- .++.+. +++.....         .  .....+.+++..++|++++++|....  
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--   79 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--   79 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence            4799999 6999999999998643 466544 33221110         1  01134667788899999999997643  


Q ss_pred             ccccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 020160          225 HLINKQVLLALGKKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       225 ~li~~~~l~~mk~gailIN~~rg~~vd~~aL~~  257 (330)
                          .+..... .+..+||.|..==.+....++
T Consensus        80 ----~~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          80 ----YDLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             ----HHHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ----HHHHHhh-ccceEEecCccccccchhhHH
Confidence                2333333 578999998755554444443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.01  E-value=0.008  Score=48.42  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            37899999999999999999999887 5677777653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.00  E-value=0.02  Score=46.26  Aligned_cols=61  Identities=15%  Similarity=0.006  Sum_probs=41.1

Q ss_pred             CceEEEEecChHHHHHH--HHHHh-CC---CEEEEECCCCCCCC-------------CC----CCCCCHHHHhhcCCEEE
Q 020160          158 GKRVGIVGLGSIGSEVA--KRLEA-FG---CCVSYNSRNKKPSV-------------TY----PFYPDVCELAANSDVLI  214 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A--~~l~~-~G---~~V~~~~~~~~~~~-------------~~----~~~~~l~ell~~aDvV~  214 (330)
                      ..||.|||.|.+|...+  ..++. ..   -++..+|..++...             +.    ....+..|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            46899999999886533  33332 22   37889998764311             11    12457889999999999


Q ss_pred             Eecc
Q 020160          215 ICCA  218 (330)
Q Consensus       215 l~~P  218 (330)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9863

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.85  E-value=0.035  Score=43.53  Aligned_cols=83  Identities=12%  Similarity=0.057  Sum_probs=50.6

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCC---CEEEEECCCCCCCC--C-----CCCCCCHHHHhhcCCEEEEeccCCccccccc
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFG---CCVSYNSRNKKPSV--T-----YPFYPDVCELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G---~~V~~~~~~~~~~~--~-----~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      ++|||||. |-+|+++.+.|...+   .++.....+.....  .     ......-.+.+..+|++++++|.....+ +.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~-~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRA-HA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHH-HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhh-hc
Confidence            68999996 999999999996433   35654432222111  0     0111112245788999999998543322 21


Q ss_pred             cHHHHhcCCCCcEEEEcCC
Q 020160          228 NKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       228 ~~~~l~~mk~gailIN~~r  246 (330)
                       .   ...+.|..+||.|.
T Consensus        82 -~---~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          82 -E---RARAAGCSVIDLSG   96 (144)
T ss_dssp             -H---HHHHTTCEEEETTC
T ss_pred             -c---ccccCCceEEeech
Confidence             1   22457899999865

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.75  E-value=0.042  Score=45.95  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ..++|.|||.|..|..+|..|+..|.+|+++++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            5689999999999999999999999999999986543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.62  E-value=0.019  Score=49.26  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             cCCceEEEEec-C--hHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGL-G--SIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~-G--~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |+||++.|.|. |  .||.++|+.|...|++|+..+++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            78999999997 4  499999999999999999988864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.57  E-value=0.034  Score=46.05  Aligned_cols=35  Identities=34%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..++|.|||.|..|-+.|..|+..|++|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35689999999999999999999999999998754

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.091  Score=41.58  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCCC-EEEEECCCCCCCC----------C--CCCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFGC-CVSYNSRNKKPSV----------T--YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +.|.+|++||=   |++..+++..+..||. .+.++.+......          +  .....++++.++++|+|...--.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999995   6799999999999975 4556655322211          1  12356888999999999764322


Q ss_pred             Ccc----------ccccccHHHHhcCCCCcEEEEcC
Q 020160          220 TDQ----------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       220 t~~----------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .+.          ....++.+.++.++++++|.-+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            111          11233556667777777777653

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.44  E-value=0.035  Score=42.74  Aligned_cols=28  Identities=32%  Similarity=0.551  Sum_probs=25.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSY  186 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~  186 (330)
                      ++|||+|+ |+||+.+++.+...|+++.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence            57999996 99999999999999998763

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.35  E-value=0.005  Score=47.36  Aligned_cols=81  Identities=12%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC----CCCCH---HH-HhhcCCEEEEeccCCccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP----FYPDV---CE-LAANSDVLIICCALTDQTHH  225 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~l---~e-ll~~aDvV~l~~P~t~~t~~  225 (330)
                      |.+-|+|+|.+|+.+++.|++.+  |.+.+..+...     .+..    -..+.   .+ -+.+|+.++++.+....+. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~-   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI-   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH-
Confidence            56889999999999999998654  55555544321     1111    11222   22 1577888888776554433 


Q ss_pred             cccHHHHhcCCCCc-EEEE
Q 020160          226 LINKQVLLALGKKG-VIIN  243 (330)
Q Consensus       226 li~~~~l~~mk~ga-ilIN  243 (330)
                       +-....+.+.|.. +++.
T Consensus        78 -~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          78 -HCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             -HHHHHHHHHCSSSCEEEE
T ss_pred             -HHHHHHHHHCCCceEEEE
Confidence             2244555666664 4443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.35  E-value=0.094  Score=44.58  Aligned_cols=69  Identities=25%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-------------CC-------CCCCCHHHHhhcCCEEEEe
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-------------TY-------PFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------------~~-------~~~~~l~ell~~aDvV~l~  216 (330)
                      -+||.|.| .|.||+.+++.|...|++|++..|+.....             +.       ....++.+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            35799999 599999999999999999999888654321             11       1122455678888988888


Q ss_pred             ccCCcccccc
Q 020160          217 CALTDQTHHL  226 (330)
Q Consensus       217 ~P~t~~t~~l  226 (330)
                      .+........
T Consensus        83 ~~~~~~~~~~   92 (312)
T d1qyda_          83 LAGGVLSHHI   92 (312)
T ss_dssp             CCCSSSSTTT
T ss_pred             hhhcccccch
Confidence            7655443333

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.23  E-value=0.062  Score=38.64  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             CceEEEEecChHHH-HHHHHHHhCCCEEEEECCCCC
Q 020160          158 GKRVGIVGLGSIGS-EVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       158 g~~vgIiG~G~IG~-~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +++|=+||.|.+|. ++|+.|+..|+.|.++|+...
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46888999999995 889999999999999998753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.15  E-value=0.028  Score=45.15  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|.+|.|.| .|.+|...++.++.+|++|++..+++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            478999988 59999999999999999998776654

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.08  E-value=0.2  Score=41.12  Aligned_cols=130  Identities=15%  Similarity=0.162  Sum_probs=82.1

Q ss_pred             HHHHHHHhCCCEEEEECCCCCC---------CCCCCCCCCHHHHhhcCCEEEEe-ccCCccccccccHHHHhcCCCCcEE
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKP---------SVTYPFYPDVCELAANSDVLIIC-CALTDQTHHLINKQVLLALGKKGVI  241 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~---------~~~~~~~~~l~ell~~aDvV~l~-~P~t~~t~~li~~~~l~~mk~gail  241 (330)
                      ..+++|...|++|.+=.-....         ..++....+.++++.++|+|+.. .|...+    .+.+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            6788899999999874332211         11333456778999999988754 444332    224577889999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCcccccCCceEEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 020160          242 INVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPEQLFALDNVVLSPHSAVFTPESFKDVCELAVANLEAFF  317 (330)
Q Consensus       242 IN~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~  317 (330)
                      |..-  ......++.++|.+.++...++|....-    .+=..+|=      .++.+.=+-.+....++.|+-+|+
T Consensus        97 i~~l--~p~~~~~~~~~l~~~~it~~a~e~ipRi----sraQ~md~------Lssqa~iaG~~a~~~~a~~l~~~~  160 (194)
T d1l7da2          97 MCHL--GALTNRPVVEALTKRKITAYAMELMPRI----SRAQSMDI------LSSQSNLVAADASPLFAKNLLNFL  160 (194)
T ss_dssp             EEEC--CGGGCHHHHHHHHHTTCEEEEGGGCCCS----GGGGGGCH------HHHHHHHGHHHHHHHHHHHHHHHH
T ss_pred             EEec--ccccchhHHHHHHhcCceEEeeeccccc----CCCCccCC------cCcchhhhhHhHHHHHHHHHHhhh
Confidence            9764  3456778999999999998888765321    11111110      111111123356667888888877

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.044  Score=46.69  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=35.1

Q ss_pred             cccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++|.||++-|-|.+. ||+++|+.+...|++|+..+++.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            468999999999765 999999999999999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.98  E-value=0.042  Score=46.88  Aligned_cols=35  Identities=31%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..|+|.|||.|..|-..|..|+..|++|+++++..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999998764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.98  E-value=0.078  Score=44.92  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=33.2

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +|.||++-|-|. +.||+++|++|...|++|+..+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 5799999999999999999988864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.85  E-value=0.058  Score=45.53  Aligned_cols=57  Identities=21%  Similarity=0.279  Sum_probs=42.6

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhh--cCCEEEEec
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAA--NSDVLIICC  217 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~--~aDvV~l~~  217 (330)
                      .|+|.|.|. |-||+.+++.|...|++|++.+++...   .....+++++++  ..|+|+-+.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---~~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---ITNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---TTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---CCCHHHHHHHHHHcCCCEEEeec
Confidence            368999996 999999999999999999999886432   222335566765  458776543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.077  Score=44.22  Aligned_cols=64  Identities=23%  Similarity=0.239  Sum_probs=47.0

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCC--EEEEECCCCCCCC------------CCCCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGC--CVSYNSRNKKPSV------------TYPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~------------~~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      ..+|+|.|.| .|-||+.+++.|..-|.  +|.+.+|++....            ......++.+.+..+|+++.++..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            4678999999 79999999999987775  8988888654321            111124566678889998877643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.028  Score=47.81  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCC-EEEEECCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRN  190 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  190 (330)
                      .|++++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4899999999999999999999999998 67777754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.78  E-value=0.1  Score=46.07  Aligned_cols=61  Identities=20%  Similarity=0.260  Sum_probs=43.7

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCCC-----C-------CCCCCCHHHHhhcCCEEEEec
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----T-------YPFYPDVCELAANSDVLIICC  217 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~-------~~~~~~l~ell~~aDvV~l~~  217 (330)
                      .+|+|.|.| .|-||+.+++.|...|.+|++.++......     .       ......+.++++.+|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            688999999 899999999999999999999876544321     0       001123344567889776554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.74  E-value=0.067  Score=46.34  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=35.5

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+|+||++.|-| .|.||+++|+.|...|++|+..+|+..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            479999999999 689999999999999999999988753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.71  E-value=0.065  Score=47.07  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+||+|.|.| .|-||+.+++.|...|++|.+++|....
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            3689999999 7899999999999999999999986543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.70  E-value=0.16  Score=44.48  Aligned_cols=89  Identities=16%  Similarity=0.186  Sum_probs=53.2

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHH----hhcCCEEEEeccCCccccccccH
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCEL----AANSDVLIICCALTDQTHHLINK  229 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~el----l~~aDvV~l~~P~t~~t~~li~~  229 (330)
                      +|.||++-|-|. +.||+++|+.|...|++|+..++..+..........++++    -...-.+...+-..+..+.++. 
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-   82 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK-   82 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH-
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH-
Confidence            589999999995 5699999999999999999998876543211112223332    2333333333333334444443 


Q ss_pred             HHHhcCCCCcEEEEc
Q 020160          230 QVLLALGKKGVIINV  244 (330)
Q Consensus       230 ~~l~~mk~gailIN~  244 (330)
                      ..++...+=-+|||.
T Consensus        83 ~~~~~~G~iDiLVnN   97 (302)
T d1gz6a_          83 TALDTFGRIDVVVNN   97 (302)
T ss_dssp             HHHHHTSCCCEEEEC
T ss_pred             HHHHHcCCCCEEEEC
Confidence            344444433466665

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.67  E-value=0.14  Score=43.06  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=31.9

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      -|+|.|.|. |.||+.+++.|...|++|.+.+|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999995 999999999999999999999987543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.50  E-value=0.06  Score=47.44  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +.|+|.|||.|..|-.+|..|+..|.+|++++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.49  E-value=0.076  Score=44.27  Aligned_cols=38  Identities=34%  Similarity=0.379  Sum_probs=34.7

Q ss_pred             ccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .-.+++|.|||.|..|-..|..|+..|++|+.+++...
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            45789999999999999999999999999999987654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.46  E-value=0.36  Score=38.82  Aligned_cols=88  Identities=15%  Similarity=0.204  Sum_probs=53.5

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhC-CCEEEEE-CCCCCCCC---------C---CCCCCCHHHHhhcCCEEEEeccCCcc
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAF-GCCVSYN-SRNKKPSV---------T---YPFYPDVCELAANSDVLIICCALTDQ  222 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~~~~---------~---~~~~~~l~ell~~aDvV~l~~P~t~~  222 (330)
                      ..+||||| -|-.|+++.+.|... .+++.+. +++.....         .   .......++...++|++++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            45799999 699999999999864 3466543 33222111         0   01112234567899999999986633


Q ss_pred             ccccccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          223 THHLINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       223 t~~li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                            .+....+......|+.+.+--..
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTCS
T ss_pred             ------HHHHHHHHhcCcccccchhhhcc
Confidence                  34444455555556655544443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.43  E-value=0.053  Score=46.12  Aligned_cols=39  Identities=26%  Similarity=0.482  Sum_probs=33.8

Q ss_pred             cccCCceEEEEecC---hHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGLG---SIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+|+||++-|-|.+   .||+++|++|...|++|+..+++.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            46899999999975   5999999999999999988777643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.40  E-value=0.054  Score=45.13  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ++|.|||.|..|-..|.+|+..|++|++++++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5799999999999999999999999999987643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.33  E-value=0.053  Score=46.37  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=35.0

Q ss_pred             cccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          154 SKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       154 ~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .+++||++.|-|.+ .||+++|++|...|++|+..+++.+.
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            36899999999965 59999999999999999999887653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.23  E-value=0.066  Score=45.86  Aligned_cols=38  Identities=32%  Similarity=0.465  Sum_probs=33.9

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+++.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 56999999999999999999988753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.21  E-value=0.073  Score=46.93  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC--------CCCC-----CCC---CHHHHhhcCCEEEEeccC
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS--------VTYP-----FYP---DVCELAANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------~~~~-----~~~---~l~ell~~aDvV~l~~P~  219 (330)
                      +.|||.|+| -|.||+.+++.|...|++|.+..|++...        .++.     ...   .++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            368999999 59999999999999999999888865431        1111     111   245678889988887665


Q ss_pred             Cc
Q 020160          220 TD  221 (330)
Q Consensus       220 t~  221 (330)
                      ..
T Consensus        82 ~~   83 (350)
T d1xgka_          82 QA   83 (350)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.20  E-value=0.06  Score=45.68  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             cCCceEEEEec-Ch--HHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGL-GS--IGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |+||++.|.|. |.  ||.++|++|...|++|+..+++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            89999999996 54  99999999999999998877654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.05  E-value=0.065  Score=46.20  Aligned_cols=37  Identities=35%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             cccCCceEEEEecC---hHHHHHHHHHHhCCCEEEEECCC
Q 020160          154 SKLGGKRVGIVGLG---SIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       154 ~~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      .+|+||++.|-|.+   .||+++|+.|...|++|+..+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            46999999999986   59999999999999999877653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.093  Score=46.59  Aligned_cols=33  Identities=33%  Similarity=0.200  Sum_probs=27.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |.+-|.| .|-||+.+++.|...|++|++.+|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5566888 89999999999999999999999853

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.87  E-value=0.079  Score=44.83  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=62.7

Q ss_pred             ccCCceEEEEecCh-HHHHHHHHHHhCCCEEEEECCCCCCC------CCC---------CCCCCHHHH-------hhcCC
Q 020160          155 KLGGKRVGIVGLGS-IGSEVAKRLEAFGCCVSYNSRNKKPS------VTY---------PFYPDVCEL-------AANSD  211 (330)
Q Consensus       155 ~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~---------~~~~~l~el-------l~~aD  211 (330)
                      .|.||++-|.|.++ ||+++|+.|...|++|+..+|+.+..      .+.         ....+++++       +..-|
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            37899999999765 99999999999999999888875431      111         111122222       34579


Q ss_pred             EEEEeccCCcccc----------c----------cccHHHHhcCCCCcEEEEcCCCcccC
Q 020160          212 VLIICCALTDQTH----------H----------LINKQVLLALGKKGVIINVGRGAIID  251 (330)
Q Consensus       212 vV~l~~P~t~~t~----------~----------li~~~~l~~mk~gailIN~~rg~~vd  251 (330)
                      +++.+........          .          .+.+..+..|+.+..+++++......
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~  141 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG  141 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC
T ss_pred             Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc
Confidence            8888754332100          0          11244567788888888887655544

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.73  E-value=0.13  Score=43.93  Aligned_cols=81  Identities=23%  Similarity=0.213  Sum_probs=54.5

Q ss_pred             cCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcC
Q 020160          156 LGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLAL  235 (330)
Q Consensus       156 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~m  235 (330)
                      ..|++|++||+-    ...++++..|+++.+++++++...  .....-++++.+||+|++.-- |=-+.-+  ...|++.
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd--~p~~~~~~lLp~aD~viiTGs-TlvN~Tl--~~LL~~~  190 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD--YPLPASEFILPECDYVYITCA-SVVDKTL--PRLLELS  190 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC--EEGGGHHHHGGGCSEEEEETH-HHHHTCH--HHHHHHT
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCC--CCchHHHHhhhcCCEEEEEec-hhhcCCH--HHHHHhC
Confidence            579999999874    466677888899999999875421  112346679999999988631 1011112  4577778


Q ss_pred             CCCcEEEEcC
Q 020160          236 GKKGVIINVG  245 (330)
Q Consensus       236 k~gailIN~~  245 (330)
                      |+...+|=+|
T Consensus       191 ~~a~~vvl~G  200 (251)
T d2h1qa1         191 RNARRITLVG  200 (251)
T ss_dssp             TTSSEEEEES
T ss_pred             CcCCEEEEEC
Confidence            8776666554

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.075  Score=44.89  Aligned_cols=37  Identities=30%  Similarity=0.527  Sum_probs=32.9

Q ss_pred             cCCceEEEEecCh---HHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVGLGS---IGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~G~---IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.||++-|-|.+.   ||+++|+.|...|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999764   999999999999999998887644

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.65  E-value=0.061  Score=39.65  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..+.+||+|.|||.|.-|..+|.-+...+-++++..++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            456899999999999999999999998887776555544

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.63  E-value=0.069  Score=45.03  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=42.8

Q ss_pred             CCceEEEEecChHH----HHHHHHHHhC--CCEEE-EECCCCCCC---------CCCCCCCCHHHHhhc--CCEEEEecc
Q 020160          157 GGKRVGIVGLGSIG----SEVAKRLEAF--GCCVS-YNSRNKKPS---------VTYPFYPDVCELAAN--SDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG~G~IG----~~~A~~l~~~--G~~V~-~~~~~~~~~---------~~~~~~~~l~ell~~--aDvV~l~~P  218 (330)
                      +-.+|||||+|.+|    +.-...++..  +++|. ++|+++...         .....+.++++++..  -|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            34689999999854    4444445544  57776 577765321         122335799999864  678999987


Q ss_pred             CCcc
Q 020160          219 LTDQ  222 (330)
Q Consensus       219 ~t~~  222 (330)
                      ....
T Consensus        95 ~~~h   98 (237)
T d2nvwa1          95 VPEH   98 (237)
T ss_dssp             HHHH
T ss_pred             Ccch
Confidence            5444

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.59  E-value=0.079  Score=44.76  Aligned_cols=64  Identities=23%  Similarity=0.210  Sum_probs=46.3

Q ss_pred             ccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCC-------CCCCCHH-------HHhhcCCEEEEecc
Q 020160          155 KLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTY-------PFYPDVC-------ELAANSDVLIICCA  218 (330)
Q Consensus       155 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-------~~~~~l~-------ell~~aDvV~l~~P  218 (330)
                      +|.||++-|-|.+ .||+++|++|...|++|...+|+.+.....       ....+++       +-+..-|+++.+.-
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            5899999999976 699999999999999999998876654321       1111222       22346899988754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.53  E-value=0.091  Score=44.93  Aligned_cols=38  Identities=32%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             ccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|+||++.|-|.+ .||+++|++|...|++|+..+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999965 6999999999999999999988754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.38  E-value=0.079  Score=42.51  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|++..
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            58899999999999999999999997 6888888654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.35  E-value=0.092  Score=44.69  Aligned_cols=38  Identities=32%  Similarity=0.472  Sum_probs=33.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|+||++-|-|. +.||+++|++|...|++|...+++.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 56999999999999999999988753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.28  E-value=0.027  Score=44.87  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|. |.+|...++.++..|. +|++.+++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            4789999995 9999999999999895 7888887653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.035  Score=47.28  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|+||++-|-|. +.||+++|++|...|++|+..+|+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            378999999994 6799999999999999999988864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.095  Score=44.41  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=33.3

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.||++-|.| -+.||+++|+.|...|++|+..+|+++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            8999998888 578999999999999999999988753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.08  Score=45.39  Aligned_cols=39  Identities=36%  Similarity=0.538  Sum_probs=34.5

Q ss_pred             cccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ..|+||++-|.|.+ .||+++|+.|...|++|+..+|+.+
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34999999999965 5999999999999999999998753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.13  Score=43.03  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +.++|.|||.|.-|-..|..|+..|++|+++..+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346799999999999999999999999999987643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.80  E-value=0.086  Score=45.21  Aligned_cols=39  Identities=36%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             ccccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          153 GSKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       153 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ..+|+||++-|-| -+.||+++|+.|...|++|+..+++.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4579999999999 78999999999999999998877654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.73  E-value=0.12  Score=44.17  Aligned_cols=38  Identities=32%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             ccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|.||++.|-|.+ .||+++|++|...|++|+..+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4899999999975 6999999999999999999988653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.73  E-value=0.12  Score=43.39  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=44.6

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC--C-----CCCCCCHHHH---hhcCCEEEEec
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV--T-----YPFYPDVCEL---AANSDVLIICC  217 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--~-----~~~~~~l~el---l~~aDvV~l~~  217 (330)
                      |+||++.|-|. +.||+++|++|...|++|...+|+.+...  +     ......++++   +.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 66999999999999999999988753211  1     1112233433   45688888764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.60  E-value=0.13  Score=43.46  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.||++-|-|. +.||+++|+.|...|++|+..+++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            489999999996 56999999999999999999888764

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=90.56  E-value=0.14  Score=41.32  Aligned_cols=91  Identities=9%  Similarity=0.020  Sum_probs=62.4

Q ss_pred             ccCCceEEEEecC--hHHHHHHHHHHhCCCEEEEECCCCCCCC--------------C--CCCCCCHHHHhhcCCEEEEe
Q 020160          155 KLGGKRVGIVGLG--SIGSEVAKRLEAFGCCVSYNSRNKKPSV--------------T--YPFYPDVCELAANSDVLIIC  216 (330)
Q Consensus       155 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~ell~~aDvV~l~  216 (330)
                      .+.|.+|++||=|  ++..+++..+..||+++.++.+..-...              +  .....++++.++.+|+|..-
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5789999999954  7999999999999999998876432110              1  12356899999999999764


Q ss_pred             ccCCc----c----------ccccccHHHHhcCCCCcEEEEcC
Q 020160          217 CALTD----Q----------THHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       217 ~P~t~----~----------t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .=...    +          ....++.......++.++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            32110    0          01223344455678888888774

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.45  E-value=0.13  Score=43.42  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=33.7

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            378999999996 56999999999999999999988754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.38  E-value=0.12  Score=41.48  Aligned_cols=33  Identities=33%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      +|.|||.|..|-..|..|+..|+ +|++++++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            58999999999999999999997 6999987653

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.34  E-value=0.09  Score=42.33  Aligned_cols=101  Identities=20%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCCCCC-----CC-CCCCCHH-HHhhcCCEEEEeccCCcccccccc---
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKKPSV-----TY-PFYPDVC-ELAANSDVLIICCALTDQTHHLIN---  228 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~-ell~~aDvV~l~~P~t~~t~~li~---  228 (330)
                      .+|||=|||+||+.+.+.+..-+.+|.+.+.......     .+ ..+..++ ++-...|.+++   .. ..-.+..   
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i---~g-~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV---DG-KAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE---TT-EEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe---cc-eeEEEEecCC
Confidence            4799999999999999998877888877654322110     00 0000011 12233454444   11 1111222   


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 020160          229 KQVLLALGKKGVIINVGRGAIIDEKEMVGCLLRGE  263 (330)
Q Consensus       229 ~~~l~~mk~gailIN~~rg~~vd~~aL~~aL~~g~  263 (330)
                      .+.+..-+-|.-+|==+.|.-.+.+.+..-|+.|-
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence            23333333455555556888888888888888663

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.33  E-value=0.24  Score=39.70  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=56.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhC-CCEEEEE-CCCCCCCC------------CCC-----CCCCHHHHhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAF-GCCVSYN-SRNKKPSV------------TYP-----FYPDVCELAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~~~~------------~~~-----~~~~l~ell~~aDvV~l~~P  218 (330)
                      .+|+||| -|-.|+++.+.|... .+++.+. .++.....            +..     ...+.+.....+|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 799999999999986 5676543 22111110            000     01234445678999999998


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVGRGAIIDEKEM  255 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~rg~~vd~~aL  255 (330)
                      .....+.     .-...+.+..+|+.|..--.+....
T Consensus        82 ~~~s~~~-----~~~~~~~~~~vIDlSadfRl~~~~~  113 (179)
T d2g17a1          82 HEVSHDL-----APQFLQAGCVVFDLSGAFRVNDRAF  113 (179)
T ss_dssp             HHHHHHH-----HHHHHHTTCEEEECSSTTSSSCHHH
T ss_pred             chhHHHH-----hhhhhhcCceeeccccccccccccc
Confidence            6533221     1222457899999987555544433

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.30  E-value=0.058  Score=42.60  Aligned_cols=84  Identities=15%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCC---EEEEECCCCCCCC--C-----CCCCCCHHHHhhcCCEEEEeccCCcccccc
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGC---CVSYNSRNKKPSV--T-----YPFYPDVCELAANSDVLIICCALTDQTHHL  226 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~~~~~~~~~--~-----~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  226 (330)
                      |-+|||||. |-.|+++.+.|....+   ++.+...+.....  .     .......++....+|++++++|.....+ +
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~-~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAK-Y   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHH-H
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhh-H
Confidence            568999996 9999999999976643   3444432221111  0     0111233456788999999988543322 2


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 020160          227 INKQVLLALGKKGVIINVGR  246 (330)
Q Consensus       227 i~~~~l~~mk~gailIN~~r  246 (330)
                          .....+.|..+|+.|.
T Consensus        80 ----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ----HHHHHHTTCEEEECSS
T ss_pred             ----HhhhccccceehhcCh
Confidence                2234567899999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.25  E-value=0.16  Score=43.21  Aligned_cols=63  Identities=13%  Similarity=0.066  Sum_probs=41.9

Q ss_pred             ccCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCCCHHHHhhcCCEEEEeccCC
Q 020160          155 KLGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKKPSVTYPFYPDVCELAANSDVLIICCALT  220 (330)
Q Consensus       155 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t  220 (330)
                      +|+||++-|-|.+ .||.++|+.+...|++|+...++.+...   ....+........+....+-.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~---~~~~~~~~~~~~~~~~~~~d~~   65 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT---ALAELKAINPKVNITFHTYDVT   65 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH---HHHHHHHHCTTSEEEEEECCTT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH---HHHHHHhhCCCCCEEEEEeecC
Confidence            5899999999966 6999999999999999877766543311   0112222333445555555444

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=90.21  E-value=0.15  Score=40.45  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=32.6

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            58999999999999999999999996 78888886643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.18  E-value=0.097  Score=44.76  Aligned_cols=38  Identities=26%  Similarity=0.438  Sum_probs=33.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|+||++-|-|. +.||+++|++|...|++|+.++|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999996 45999999999999999999988753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.02  E-value=0.054  Score=43.62  Aligned_cols=85  Identities=21%  Similarity=0.242  Sum_probs=56.4

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCC-----CCCC------CCCCHHHHh-----hcCCEEEEeccC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPS-----VTYP------FYPDVCELA-----ANSDVLIICCAL  219 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~~------~~~~l~ell-----~~aDvV~l~~P~  219 (330)
                      .|.+|.|.|. |.+|+..++.++..|++|++..+++++.     .+..      .....+.++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            4899999998 6799999999999999999887765421     1111      111122222     33777777663 


Q ss_pred             CccccccccHHHHhcCCCCcEEEEcCCC
Q 020160          220 TDQTHHLINKQVLLALGKKGVIINVGRG  247 (330)
Q Consensus       220 t~~t~~li~~~~l~~mk~gailIN~~rg  247 (330)
                       .++  +  .+.++.++++..++.+|..
T Consensus       108 -~~~--~--~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GEF--L--NTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HHH--H--HHHGGGEEEEEEEEECCCG
T ss_pred             -chh--h--hhhhhhccCCCeEEeecce
Confidence             121  2  4667778888888887653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.85  E-value=0.071  Score=43.25  Aligned_cols=61  Identities=18%  Similarity=0.074  Sum_probs=41.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCE--EEEECCCCCCC----CC-------CCCCCCHHHHhhcCCEEEEeccC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCC--VSYNSRNKKPS----VT-------YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~--V~~~~~~~~~~----~~-------~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +||.|.| -|.||+.+++.|...|.+  |....|++...    ..       .....++.++++.+|.|+.+...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            5899999 699999999999988865  55555654321    11       11123456678899998876543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.66  E-value=0.13  Score=43.77  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             cCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |+||++-|-|.+ .||+++|++|...|++|+..+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            789999998864 599999999999999999998864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=89.62  E-value=0.14  Score=43.83  Aligned_cols=38  Identities=34%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             cccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          154 SKLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      ++|+||++-|-| -+.||+++|++|...|++|+..+|+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999998 57899999999999999999888865

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=89.59  E-value=0.18  Score=42.69  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=33.8

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.||++-|-| -+.||+++|+.|...|++|...+++.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999999 678999999999999999999988764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.55  E-value=0.1  Score=41.99  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=26.0

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSR  189 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~  189 (330)
                      +|||=|||+||+.+.+.+...+.+|.+.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            799999999999999999877888876643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.54  E-value=0.13  Score=43.75  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECC
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSR  189 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~  189 (330)
                      +.|.||++.|-|. |.||+++|+.|...|++|+...+
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            4589999999995 55999999999999999986433

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.48  E-value=0.17  Score=37.53  Aligned_cols=36  Identities=33%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             CceEEEEecChHHHHHHHHHHh---CCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEA---FGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~---~G~~V~~~~~~~~~  193 (330)
                      .+++.|||.|.+|-++|..+..   .|.+|..+.+.+..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            4799999999999999987654   48899888776543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.44  E-value=0.13  Score=40.45  Aligned_cols=31  Identities=39%  Similarity=0.353  Sum_probs=27.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEE
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYN  187 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~  187 (330)
                      .+++|.|||-|.+|-++|..|+.+|.+|.+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4789999999999999999999999875443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=89.42  E-value=0.16  Score=44.57  Aligned_cols=62  Identities=18%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCCC-------------C-------CCCCCCCHHHHhhcCCEEE
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKPS-------------V-------TYPFYPDVCELAANSDVLI  214 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------~-------~~~~~~~l~ell~~aDvV~  214 (330)
                      ..||+|.|.| .|-||+.+++.|...|++|.+..|+....             .       ......++++++..+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            4699999999 68899999999999999998866543210             0       1122345667889999887


Q ss_pred             Eec
Q 020160          215 ICC  217 (330)
Q Consensus       215 l~~  217 (330)
                      .+.
T Consensus        89 ~~a   91 (342)
T d1y1pa1          89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             hhc
Confidence            554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.39  E-value=0.25  Score=38.29  Aligned_cols=37  Identities=27%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             cCCceEEEE--ecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIV--GLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIi--G~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .-++.+.|+  |-|-||-++|..|..+|.+|++..+.+.
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            446777777  8899999999999999999999987654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.15  E-value=0.18  Score=40.24  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=29.8

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.|||.|..|...|..|...|.+|++++++..
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            78999999999999999999999999998753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.12  E-value=0.21  Score=40.66  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            48899999999999999999999998 7888887654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.09  E-value=0.16  Score=43.14  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=33.7

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-|. +.||+++|++|...|++|+..+++.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 56999999999999999999998753

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.06  E-value=0.15  Score=43.80  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=33.8

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|.|. +.||+++|++|...|++|+..+|+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 67999999999999999999988753

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.03  E-value=0.16  Score=43.23  Aligned_cols=38  Identities=29%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-|. +.||+++|+.|...|++|...+++.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            389999999996 78999999999999999999988653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.24  Score=42.05  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=34.6

Q ss_pred             cccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          154 SKLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       154 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ..++||++-|.|. +.||+++|++|...|++|++.+|+..
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4599999999995 68999999999999999999988753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.86  E-value=0.21  Score=40.94  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             eEEEEecChHHHHHHHHHH--hCCCEEEEECCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLE--AFGCCVSYNSRNKK  192 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~--~~G~~V~~~~~~~~  192 (330)
                      +|+|||.|..|-..|..|+  .+|++|+++++.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            8999999999999999885  46889999988764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.79  E-value=0.21  Score=42.88  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 79999999999999999999988754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.78  E-value=0.22  Score=42.13  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-|. +.||+++|++|...|++|+..+++.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999996 66999999999999999999988754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.77  E-value=0.61  Score=37.47  Aligned_cols=61  Identities=21%  Similarity=0.217  Sum_probs=41.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC--EEEEECCCCCCCCC-C-CCCCCHHHH----hhcCCEEEEeccC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC--CVSYNSRNKKPSVT-Y-PFYPDVCEL----AANSDVLIICCAL  219 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~~~~-~-~~~~~l~el----l~~aDvV~l~~P~  219 (330)
                      |+|.|.|. |-||+.+++.|...|.  +|+...|++..... . ....++.++    ...+|.|+.|+-.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeee
Confidence            79999997 9999999999999897  66666665433221 1 112344333    3447999887643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.70  E-value=0.15  Score=43.26  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +|.|||.|..|..+|..|+..|.+|.++++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999998753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.66  E-value=0.22  Score=43.47  Aligned_cols=34  Identities=29%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC--CEEEEECCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG--CCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~  192 (330)
                      |+|+|||.|.-|-.+|..|+..|  .+|++++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999999987655  69999988753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.52  E-value=0.25  Score=41.18  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      .||++-|.|. |.||+++|+.|...|++|...++....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999996 679999999999999999988776544

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=88.40  E-value=0.54  Score=38.33  Aligned_cols=93  Identities=10%  Similarity=0.089  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCEEEEECCCCCCC---------CCCCCCCCHHHHhhcCCEEEEeccCCccccccccHHHHhcCCCCcEEE
Q 020160          172 EVAKRLEAFGCCVSYNSRNKKPS---------VTYPFYPDVCELAANSDVLIICCALTDQTHHLINKQVLLALGKKGVII  242 (330)
Q Consensus       172 ~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI  242 (330)
                      ..++++...|++|.+=.-.....         .+.....+.+++. +||+|+..-|.+        .+.++.||+|+++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            56788889999998743322211         1333345666666 689887654433        24578899999998


Q ss_pred             EcCCCcccCHHHHHHHHHcCCceEEEEecCCCC
Q 020160          243 NVGRGAIIDEKEMVGCLLRGEIGGAGLDVFENE  275 (330)
Q Consensus       243 N~~rg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  275 (330)
                      -.-.  .....++.+.|.++++...++|.....
T Consensus        92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          92 TYLH--LAAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             EecC--cccchHHHHHHHHcCCEEEEeeecccc
Confidence            7644  344568999999999998888876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.35  E-value=0.24  Score=42.16  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=33.6

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.||++.|.|. +.||+++|++|...|++|+..+++.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 56999999999999999999888653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=88.28  E-value=0.17  Score=40.70  Aligned_cols=31  Identities=23%  Similarity=0.241  Sum_probs=24.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC---CEEEEECC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG---CCVSYNSR  189 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~  189 (330)
                      .+|||=|||+||+.+.+.+....   ++|.+.+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            47999999999999999876543   56665543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.14  E-value=0.26  Score=40.81  Aligned_cols=35  Identities=23%  Similarity=0.160  Sum_probs=31.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKKP  193 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  193 (330)
                      .+|.|||.|..|..+|..|+..|. +|.++++++..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            379999999999999999999996 89999887654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.11  E-value=0.07  Score=42.09  Aligned_cols=59  Identities=15%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCCCC-----------C------CCCCCCHHHHhhcCCEE
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKPSV-----------T------YPFYPDVCELAANSDVL  213 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~~~-----------~------~~~~~~l~ell~~aDvV  213 (330)
                      .+|.|||. |.+|..+|-.|..-++       .+..+|.......           .      .....+..+.+++||+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            48999995 9999999998864332       3556665443210           1      11235678899999999


Q ss_pred             EEec
Q 020160          214 IICC  217 (330)
Q Consensus       214 ~l~~  217 (330)
                      +++.
T Consensus        84 Vita   87 (154)
T d5mdha1          84 ILVG   87 (154)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9976

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.98  E-value=0.2  Score=42.44  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=33.7

Q ss_pred             ccCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-| -+.||+++|++|...|++|+..+++.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999999 567999999999999999999888653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.88  E-value=0.27  Score=41.81  Aligned_cols=37  Identities=30%  Similarity=0.342  Sum_probs=33.1

Q ss_pred             cCCceEEEEecC-hHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVGLG-SIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.||++-|-|.+ .||+++|++|...|++|...+++.+
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            789999999965 6999999999999999999988753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.83  E-value=0.24  Score=41.49  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      -|.|||.|.+|.++|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.21  E-value=0.22  Score=42.71  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=33.1

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |+||++-|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999996 56999999999999999999988753

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.15  E-value=0.23  Score=42.27  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-|. +.||+++|++|...|++|+..+|+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            478999999994 78999999999999999999988643

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.00  E-value=0.4  Score=36.14  Aligned_cols=40  Identities=23%  Similarity=0.253  Sum_probs=35.1

Q ss_pred             ccccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          153 GSKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       153 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      +.-.+||+|.|||-|..+-.-|..|..+.-+|+++-|+.+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            3346899999999999999999999999999998877654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.23  Score=42.99  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      |+|.|.| .|-||+.+++.|...|++|++.++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            7899998 6889999999999999999998763

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=86.71  E-value=0.71  Score=40.31  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             cCCceEEEEec---ChHHHHHHHHHHhCC-CEEEEECCCCCCC----------CC--CCCCCCHHHHhhcCCEEEEeccC
Q 020160          156 LGGKRVGIVGL---GSIGSEVAKRLEAFG-CCVSYNSRNKKPS----------VT--YPFYPDVCELAANSDVLIICCAL  219 (330)
Q Consensus       156 l~g~~vgIiG~---G~IG~~~A~~l~~~G-~~V~~~~~~~~~~----------~~--~~~~~~l~ell~~aDvV~l~~P~  219 (330)
                      +.|++|+++|-   +++..+.+..+..+| +++..+.+..-..          .+  .....++++.++++|+|...--.
T Consensus       152 l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~  231 (310)
T d1tuga1         152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ  231 (310)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCCC
T ss_pred             cccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeecccc
Confidence            78999999997   788999999999885 6887776532211          11  22346889999999998753211


Q ss_pred             Ccc----------ccccccHHHHhcCCCCcEEEEc
Q 020160          220 TDQ----------THHLINKQVLLALGKKGVIINV  244 (330)
Q Consensus       220 t~~----------t~~li~~~~l~~mk~gailIN~  244 (330)
                      .+.          ....++.+.++.++++++|.-+
T Consensus       232 ~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc  266 (310)
T d1tuga1         232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             GGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred             hhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence            110          1123456666666666666644

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.42  Score=41.42  Aligned_cols=37  Identities=30%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            499999999995 5699999999999999999998864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=0.24  Score=42.06  Aligned_cols=38  Identities=32%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|+||++-|-|. +.||+++|++|...|++|+..+++.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999996 57999999999999999999888653

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.51  E-value=0.44  Score=38.18  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             cCCceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          156 LGGKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       156 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      ..|.+|.|.| -|.+|....+.++.+|++|+...+++++
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            4689999999 6999999999999999999988776544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.27  Score=39.76  Aligned_cols=30  Identities=20%  Similarity=0.169  Sum_probs=28.0

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      |.|||.|..|...|.+++.+|.+|..+++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=0.59  Score=40.56  Aligned_cols=32  Identities=31%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      |+|.|.| -|-||+.+++.|...|.+|++.|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            5788998 6999999999999999999998763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=0.22  Score=39.70  Aligned_cols=35  Identities=14%  Similarity=0.041  Sum_probs=31.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +++.|.|||-|..|-..|..++.+|++|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999887644

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.21  E-value=0.3  Score=39.09  Aligned_cols=31  Identities=29%  Similarity=0.264  Sum_probs=24.7

Q ss_pred             ceEEEEecChHHHHHHHHHHh---CCCEEEEECC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEA---FGCCVSYNSR  189 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~---~G~~V~~~~~  189 (330)
                      .+|||=|||+||+.+.+.+..   .+.+|.+.+.
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            379999999999999998864   3478776654

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.18  E-value=6.5  Score=31.46  Aligned_cols=150  Identities=18%  Similarity=0.234  Sum_probs=88.3

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEE-ECCCCCCCC--------------CCCC-----C--CCHHHHh--hcCCEEE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSY-NSRNKKPSV--------------TYPF-----Y--PDVCELA--ANSDVLI  214 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~~~--------------~~~~-----~--~~l~ell--~~aDvV~  214 (330)
                      +++.++|.+.+|..+.+.|...|.+|.+ +....++..              +...     .  ..+.+.+  .++|+++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii   80 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIF   80 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhccccee
Confidence            5799999999999999999999999864 432221100              1110     0  1122323  2578887


Q ss_pred             EeccCCccccccccHHHHhcCCCCcEEEEcC-----CCcccCHHHHHHHHHcCCceEEEEecCCCCCCCCc-ccccCCce
Q 020160          215 ICCALTDQTHHLINKQVLLALGKKGVIINVG-----RGAIIDEKEMVGCLLRGEIGGAGLDVFENEPDVPE-QLFALDNV  288 (330)
Q Consensus       215 l~~P~t~~t~~li~~~~l~~mk~gailIN~~-----rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~L~~~~nv  288 (330)
                      +.-     ...+|.++.++..+-+.+=+--|     ||.    ..+..++.+|.-. .|.-++.-.+..+. +++....+
T Consensus        81 ~~g-----~~~ii~~~il~~~~~~~iN~H~slLP~yrG~----~p~~wai~~g~~~-~G~Tih~i~~~iD~G~Il~q~~~  150 (203)
T d2blna2          81 SFY-----YRHLIYDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETE-TGVTLHRMVKRADAGAIVAQLRI  150 (203)
T ss_dssp             EES-----CCSCCCHHHHTTCTTCEEEEESSCTTTTEES----CHHHHHHHTTCSE-EEEEEEECCSSTTCSCEEEEEEE
T ss_pred             eee-----cccchhcccchhhHHHHHHHhhhcchhhhhh----hhhhhhhhccccc-ccceeEEeeccCCCccceeeccc
Confidence            653     34578888888776655433333     443    2355667777533 45566665555554 77777778


Q ss_pred             EEcCCCCCCCHHHHHHHH----HHHHHHHHHHHcCC
Q 020160          289 VLSPHSAVFTPESFKDVC----ELAVANLEAFFSNK  320 (330)
Q Consensus       289 ilTPHia~~t~~~~~~~~----~~~~~nl~~~~~g~  320 (330)
                      -+.|.--.  .+...++.    +.+.+.+..+.+|+
T Consensus       151 ~i~~~~t~--~~l~~k~~~~~~~l~~~~l~~i~~g~  184 (203)
T d2blna2         151 AIAPDDIA--ITLHHKLCHAARQLLEQTLPAIKHGN  184 (203)
T ss_dssp             ECCTTCCH--HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccchhhH--HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77776422  22333333    45666666677775

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=0.35  Score=40.80  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             cCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          156 LGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       156 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.||++-|-|. +.||+++|+.|...|++|+..+|+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999996 5699999999999999999988865

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.95  E-value=0.43  Score=36.30  Aligned_cols=36  Identities=36%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             CceEEEEecChHHHHHHHHH----HhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRL----EAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l----~~~G~~V~~~~~~~~~  193 (330)
                      ++++.|||-|.+|-++|..+    +..|.+|+...+.+..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            57999999999999998777    4689999988876554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=85.93  E-value=0.28  Score=41.16  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCCCC-CCCCCCCHHHHhhc--CCEEEEec
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKPSV-TYPFYPDVCELAAN--SDVLIICC  217 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~ell~~--aDvV~l~~  217 (330)
                      |+|.|.|. |-||+.+++.|...|..|. .+++..... .......++++++.  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            57899994 9999999999999886554 444433221 12222345566654  48776544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.73  E-value=0.36  Score=41.91  Aligned_cols=36  Identities=25%  Similarity=0.205  Sum_probs=32.0

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      ....|.|||.|..|-.+|..|+..|.+|+++++.++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            456799999999999999999999999999987643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.62  E-value=0.33  Score=38.09  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            48899999999999999999999997 566666654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.62  E-value=0.32  Score=41.98  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+.|||.|..|-.+|.+|+..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            588999999999999999999999999987654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.50  E-value=0.37  Score=40.66  Aligned_cols=38  Identities=32%  Similarity=0.220  Sum_probs=33.6

Q ss_pred             ccCCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          155 KLGGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       155 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.||++-|.|. +.||+++|+.|...|++|+.++|+.+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            478999999996 67999999999999999999988653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.26  E-value=0.26  Score=39.69  Aligned_cols=97  Identities=18%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             CceEEEEec-ChHHHHHHHHHHh---CCC----EEEEECCCCCCC-----------C------CCCCCCCHHHHhhcCCE
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEA---FGC----CVSYNSRNKKPS-----------V------TYPFYPDVCELAANSDV  212 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~---~G~----~V~~~~~~~~~~-----------~------~~~~~~~l~ell~~aDv  212 (330)
                      -.+|.|+|. |.||..++-+|..   ||.    .+..+|......           .      ......+..+.++.||+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            458999996 9999999999875   553    455666544211           0      11124578899999999


Q ss_pred             EEEeccCCccccc-----cc--c-------HHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 020160          213 LIICCALTDQTHH-----LI--N-------KQVLLA-LGKKGVIINVGRGAIIDEKEMVG  257 (330)
Q Consensus       213 V~l~~P~t~~t~~-----li--~-------~~~l~~-mk~gailIN~~rg~~vd~~aL~~  257 (330)
                      |++..-. +...+     ++  |       .+.+.+ .+++++++=++  ..+|.-+++.
T Consensus       104 Vvi~ag~-~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAK-PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALIC  160 (175)
T ss_dssp             EEECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHHH
T ss_pred             EEEeecc-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHHH
Confidence            9998632 21111     11  1       122333 56678777665  4688777653

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=85.15  E-value=0.39  Score=38.29  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=25.8

Q ss_pred             ceEEEEecChHHHHHHHHHHhC-CCEEEEECCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF-GCCVSYNSRN  190 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~  190 (330)
                      .+|||=|||+||+.+.+.+... .++|.+.+..
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            4799999999999999988765 4677766543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=85.07  E-value=0.44  Score=39.97  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.|||.|.+|..+|..|...|.+|++.++...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            88999999999999999999999999988643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=84.99  E-value=0.41  Score=40.70  Aligned_cols=32  Identities=25%  Similarity=0.466  Sum_probs=28.9

Q ss_pred             eEEEEecChHHHHHHHHHHhCCC-EEEEECCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNK  191 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  191 (330)
                      .|.|||.|.+|.++|..|...|. +|++.++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999999997 699998864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.82  E-value=0.37  Score=35.59  Aligned_cols=36  Identities=31%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             CceEEEEecChHHHHHHHHHHhCC---CEEEEECCCCCC
Q 020160          158 GKRVGIVGLGSIGSEVAKRLEAFG---CCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~  193 (330)
                      .+++.|||.|.+|-++|..+..+|   .+|+.+.+.+..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            479999999999999998777665   479888775543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.81  E-value=0.44  Score=38.56  Aligned_cols=38  Identities=26%  Similarity=0.462  Sum_probs=32.1

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      .+++||+|.|||.|.-|..+|..+..-+.++...-+++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            45899999999999999999999988888876655544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.26  E-value=0.32  Score=38.92  Aligned_cols=35  Identities=17%  Similarity=-0.012  Sum_probs=31.3

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      +.++|.|||-|..|-..|..+..+|++|+++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            46899999999999999999999999999887654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=84.23  E-value=0.094  Score=41.30  Aligned_cols=96  Identities=17%  Similarity=0.155  Sum_probs=55.1

Q ss_pred             CceEEEEec-ChHHHHHHHHHHhCCC-------EEEEECCCCCCC-----------C------CCCCCCCHHHHhhcCCE
Q 020160          158 GKRVGIVGL-GSIGSEVAKRLEAFGC-------CVSYNSRNKKPS-----------V------TYPFYPDVCELAANSDV  212 (330)
Q Consensus       158 g~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~~-----------~------~~~~~~~l~ell~~aDv  212 (330)
                      -.+|.|+|. |.+|+.+|-.|...++       ....++......           .      ......+..+.++.||+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            358999996 9999999999975432       112222221110           0      01123567889999999


Q ss_pred             EEEecc--CCcc-cc-ccc--c--------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 020160          213 LIICCA--LTDQ-TH-HLI--N--------KQVLLALGKKGVIINVGRGAIIDEKEM  255 (330)
Q Consensus       213 V~l~~P--~t~~-t~-~li--~--------~~~l~~mk~gailIN~~rg~~vd~~aL  255 (330)
                      |+++.-  ..+. +| .++  |        ...-+..+++++++.++.  .+|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            999762  2221 21 122  1        112223567888888753  5665543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.08  E-value=0.59  Score=35.90  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=28.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .+|.|||.|.+|-++|..|+. +.+|+.+++.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            379999999999999999976 679998877543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.07  E-value=0.5  Score=38.77  Aligned_cols=33  Identities=24%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      -|.|||.|..|...|..|...|++|+.+++.+.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            378999999999999999999999999988654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.29  Score=33.89  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CCceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          157 GGKRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      .|.++.|.|. |.+|....+.++.+|++|++..++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            5788999886 99999999999999999998877654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.95  E-value=0.43  Score=38.14  Aligned_cols=33  Identities=15%  Similarity=0.261  Sum_probs=28.0

Q ss_pred             ceEEEEecChHHHHHHHHHHhC--CCEEEEECCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF--GCCVSYNSRNK  191 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~  191 (330)
                      +||.|||.|.+|-++|..|+.+  +.+|+.+++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  45788887654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.63  E-value=0.42  Score=40.55  Aligned_cols=31  Identities=32%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |.|||.|..|-..|..|+..|.+|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.51  E-value=0.84  Score=37.68  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=44.9

Q ss_pred             cccCCceEEEEecChHHHHHHHHHHh--------------------CCC-EEEEECCCCCCCCCCCCCCCHHHHhhcCCE
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLEA--------------------FGC-CVSYNSRNKKPSVTYPFYPDVCELAANSDV  212 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~~--------------------~G~-~V~~~~~~~~~~~~~~~~~~l~ell~~aDv  212 (330)
                      ..+.|+++.|||-|+.+--+|+.|..                    .|. +|..+.|+......+. ...+.++....++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft-~~Elre~~~~~~~  113 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFT-IKELREMIQLPGT  113 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCC-HHHHHHHHTCTTE
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCC-chhhhcccccCCC
Confidence            45789999999999999999998876                    465 6877777654432222 2346677777777


Q ss_pred             EEEe
Q 020160          213 LIIC  216 (330)
Q Consensus       213 V~l~  216 (330)
                      -+..
T Consensus       114 ~~~~  117 (225)
T d1cjca1         114 RPML  117 (225)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            6654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.34  E-value=0.4  Score=38.64  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      |.|||.|..|...|..+..+|++|+++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999987653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.34  E-value=0.087  Score=43.17  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCE
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCC  183 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~  183 (330)
                      ++|.|||.|-+|..+|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5799999999999999999988864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.32  E-value=0.3  Score=39.73  Aligned_cols=34  Identities=21%  Similarity=0.069  Sum_probs=29.4

Q ss_pred             ceEEEEecChHHHHHHHHHHhCC-------CEEEEECCCCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFG-------CCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~  192 (330)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            58999999999999999998766       68999988654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.30  E-value=0.64  Score=36.38  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             CCceEEEEecChHHHHHHHHHHhCCC-EEEEECCCCC
Q 020160          157 GGKRVGIVGLGSIGSEVAKRLEAFGC-CVSYNSRNKK  192 (330)
Q Consensus       157 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  192 (330)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.+++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            58899999999999999999998887 6788877654

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=83.22  E-value=0.43  Score=38.14  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             eEEEEecChHHHHHHHHHHhC-CCEEEEECC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAF-GCCVSYNSR  189 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~  189 (330)
                      +|||=|||+||+.+.+.+... ..+|.+.+.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            799999999999999987643 477766543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.12  E-value=0.52  Score=38.13  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      =|.|||.|..|-..|..+...|++|+.++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999998654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.87  E-value=0.54  Score=39.60  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             ceEEEE-ec-ChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          159 KRVGIV-GL-GSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIi-G~-G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |||.+| |. +.||+++|+.|...|++|...+|+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            466544 64 56999999999999999999988753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.84  E-value=1.1  Score=36.71  Aligned_cols=64  Identities=23%  Similarity=0.290  Sum_probs=44.2

Q ss_pred             cccCCceEEEEecChHHHHHHHHHH--------------------hCCC-EEEEECCCCCCCCCCCCCCCHHHHhhcCCE
Q 020160          154 SKLGGKRVGIVGLGSIGSEVAKRLE--------------------AFGC-CVSYNSRNKKPSVTYPFYPDVCELAANSDV  212 (330)
Q Consensus       154 ~~l~g~~vgIiG~G~IG~~~A~~l~--------------------~~G~-~V~~~~~~~~~~~~~~~~~~l~ell~~aDv  212 (330)
                      ..+.|++|.|||-|+.+--+|+.|.                    ..|. +|..+.|+......+. ...+.|+.+-.++
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCCC
Confidence            4578999999999999999999876                    5676 5877777654332222 2346667776776


Q ss_pred             EEEecc
Q 020160          213 LIICCA  218 (330)
Q Consensus       213 V~l~~P  218 (330)
                      -...-|
T Consensus       114 ~~~~~~  119 (216)
T d1lqta1         114 DVVIDP  119 (216)
T ss_dssp             EEECCG
T ss_pred             CccCCH
Confidence            665443

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=82.81  E-value=1.6  Score=38.01  Aligned_cols=109  Identities=14%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 020160          117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF----GC-------CVS  185 (330)
Q Consensus       117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  185 (330)
                      +|=.+++-+++.+|-.                    ++.|...++.|.|.|.-|-.+|+.+...    |+       +++
T Consensus         4 Ta~V~lAglinAlki~--------------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT--------------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY   63 (308)
T ss_dssp             HHHHHHHHHHHHHHHH--------------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHHh--------------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE
Confidence            4555666666666542                    4457889999999999999999987643    32       377


Q ss_pred             EECCCCC-----CCC-----CC----CCCCCHHHHhhcC--CEEEEeccCCccccccccHHHHhcC---CCCcEEEEcCC
Q 020160          186 YNSRNKK-----PSV-----TY----PFYPDVCELAANS--DVLIICCALTDQTHHLINKQVLLAL---GKKGVIINVGR  246 (330)
Q Consensus       186 ~~~~~~~-----~~~-----~~----~~~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~~l~~m---k~gailIN~~r  246 (330)
                      .+|+..-     ...     .+    ....++.++++..  ++++-+    ....++++++.++.|   .+.+++.=.|.
T Consensus        64 ~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~----s~~~g~ft~evv~~Ma~~~~~PIIFaLSN  139 (308)
T d1o0sa1          64 LMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGA----STVRGAFNEEVIRAMAEINERPIIFALSN  139 (308)
T ss_dssp             EEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEEC----SSCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEec----ccccCCCCHHHHHHHHhhCCCcEEEEccC
Confidence            7765421     100     01    1123566665543  444432    123456666666554   37777777777


Q ss_pred             Ccc
Q 020160          247 GAI  249 (330)
Q Consensus       247 g~~  249 (330)
                      -.-
T Consensus       140 Ptp  142 (308)
T d1o0sa1         140 PTS  142 (308)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            554

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=2.7  Score=36.23  Aligned_cols=123  Identities=13%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCCCccccCCceEEEEecChHHHHHHHHHHhC----CC-------EEE
Q 020160          117 VADYALGLLIDVLRKLSAADCFVRQGLWPINAEFPLGSKLGGKRVGIVGLGSIGSEVAKRLEAF----GC-------CVS  185 (330)
Q Consensus       117 vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  185 (330)
                      +|=.+++-+++.+|-.                    ++.|...++.|.|.|.-|-.+|+.+...    |+       +++
T Consensus         4 Ta~V~lAglinAlki~--------------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~   63 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI--------------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW   63 (294)
T ss_dssp             HHHHHHHHHHHHHHHH--------------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHHh--------------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE
Confidence            4555677777666642                    4568889999999999999999987644    32       377


Q ss_pred             EECCCC-----CCC--CCC----------CCCCCHHHHhh--cCCEEEEeccCCccccccccHHHHh---cCCCCcEEEE
Q 020160          186 YNSRNK-----KPS--VTY----------PFYPDVCELAA--NSDVLIICCALTDQTHHLINKQVLL---ALGKKGVIIN  243 (330)
Q Consensus       186 ~~~~~~-----~~~--~~~----------~~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~l~---~mk~gailIN  243 (330)
                      .+|+..     +..  ...          ....+|.|+++  +.|+++-..    ...++++++.++   .|.+.+++.=
T Consensus        64 lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S----~~~g~ft~evi~~Ma~~~~~PIIFa  139 (294)
T d1pj3a1          64 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVA----GAGRLFTPDVIRAMASINERPVIFA  139 (294)
T ss_dssp             EEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECC----CSSCCSCHHHHHHHHHHCSSCEEEE
T ss_pred             EEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEec----CCCCcCCHHHHHHHHhcCCCcEEEE
Confidence            766532     110  000          11247888876  777776543    223567777765   4568899998


Q ss_pred             cCCCccc---CHHHHHHHHHcCCc
Q 020160          244 VGRGAII---DEKEMVGCLLRGEI  264 (330)
Q Consensus       244 ~~rg~~v---d~~aL~~aL~~g~i  264 (330)
                      .|.-.--   ..+..+++ .+|+.
T Consensus       140 LSNPt~~~e~~~~~a~~~-t~gra  162 (294)
T d1pj3a1         140 LSNPTAQAECTAEEAYTL-TEGRC  162 (294)
T ss_dssp             CCSSGGGCSCCHHHHHHH-TTTCC
T ss_pred             ccCCCCcCCcCHHHHHhh-ccCce
Confidence            8886542   34444444 34444

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=0.88  Score=39.19  Aligned_cols=60  Identities=23%  Similarity=0.170  Sum_probs=39.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCC-CEEEEECCCCCCC------CC-------CCCCCCHHH-HhhcCCEEEEecc
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFG-CCVSYNSRNKKPS------VT-------YPFYPDVCE-LAANSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------~~-------~~~~~~l~e-ll~~aDvV~l~~P  218 (330)
                      |+|.|.| .|-||+.+++.|...| .+|++.|+.....      ..       .....++.+ ...++|+|+-++-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            5788888 6899999999999888 5898887643211      01       111223333 6778998775443

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=9.3  Score=30.61  Aligned_cols=29  Identities=14%  Similarity=0.264  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020160          295 AVFTPESFKDVCELAVANLEAFFSNKPLL  323 (330)
Q Consensus       295 a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  323 (330)
                      ...+.+....+.+...+.+.+..+-+++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~p  221 (230)
T d2qwxa1         193 EIASEEERKGMVAAWSQRLQTIWKEEPIP  221 (230)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44577888888888888888888777653

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=82.48  E-value=0.4  Score=38.48  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             ceEEEEecChHHHHHHHHHHhC----CCEEEEECCCCCCCC-----CC-CCCCCHH-HHhhcCCEEEEeccCCccccccc
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAF----GCCVSYNSRNKKPSV-----TY-PFYPDVC-ELAANSDVLIICCALTDQTHHLI  227 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~-----~~-~~~~~l~-ell~~aDvV~l~~P~t~~t~~li  227 (330)
                      .+|||=|||+||+.+.+.+...    ..+|...+.......     .+ ..+..++ ++-...+.+++    +...-.++
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i----~g~~i~i~   77 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVV----NGDKIRVD   77 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE----TTEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEE----CCEEEEEE
Confidence            4799999999999999987643    346666554322110     00 0000000 11233444443    11222233


Q ss_pred             cH---HHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 020160          228 NK---QVLLALGKKG-VIINVGRGAIIDEKEMVGCLLRGEIG  265 (330)
Q Consensus       228 ~~---~~l~~mk~ga-ilIN~~rg~~vd~~aL~~aL~~g~i~  265 (330)
                      ..   +.+..-+-|. ++|. +.|.--+.+.+..-|+.|--.
T Consensus        78 ~~~~p~~i~W~~~gvDiViE-cTG~f~~~~~a~~hl~~Gakk  118 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLE-CTGFFTTKEKAGAHIKGGAKK  118 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEE-CSSSCCSHHHHHHHHHHTCSE
T ss_pred             ecCCHHHCcccccccceEEE-ecccccCHHHHHHHhccCCcc
Confidence            22   2333333344 4555 467777788888888877543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.39  E-value=0.61  Score=38.18  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=29.9

Q ss_pred             ceEEEEec-ChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          159 KRVGIVGL-GSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       159 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      |++-|-|. +.||+++|++|...|++|+..+++.+.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            67777775 799999999999999999999887654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=0.64  Score=36.17  Aligned_cols=30  Identities=27%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      |.|||-|.+|-..|..+..+|++|+..++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999988864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.19  E-value=0.52  Score=38.19  Aligned_cols=32  Identities=22%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             ceEEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          159 KRVGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      .-|.|||.|..|...|..++.+|.+|+.+++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35899999999999999999999999998764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.76  E-value=0.19  Score=40.51  Aligned_cols=83  Identities=18%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             CCceEEEEe-cChHHHHHHHHHHhCCCE-EEEECCCCCCC------CCCC-----CCCCHHHHhhc-----CCEEEEecc
Q 020160          157 GGKRVGIVG-LGSIGSEVAKRLEAFGCC-VSYNSRNKKPS------VTYP-----FYPDVCELAAN-----SDVLIICCA  218 (330)
Q Consensus       157 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~------~~~~-----~~~~l~ell~~-----aDvV~l~~P  218 (330)
                      .+++|.|.| .|.+|...++.++.+|++ |++...+.+..      .+..     ...++.+.+++     .|+|+-++-
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            357899999 599999999999999996 44444443221      1211     12345554444     787776653


Q ss_pred             CCccccccccHHHHhcCCCCcEEEEcC
Q 020160          219 LTDQTHHLINKQVLLALGKKGVIINVG  245 (330)
Q Consensus       219 ~t~~t~~li~~~~l~~mk~gailIN~~  245 (330)
                      .  +  .+  ...++.++++..++.+|
T Consensus       110 g--~--~~--~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         110 G--D--IS--NTVISQMNENSHIILCG  130 (187)
T ss_dssp             H--H--HH--HHHHTTEEEEEEEEEC-
T ss_pred             c--h--hH--HHHhhhccccccEEEec
Confidence            1  1  12  45677888888888775

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.38  E-value=0.76  Score=39.11  Aligned_cols=34  Identities=24%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |+|-|.| .|-||+.+++.|...|++|++.++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6788888 689999999999999999999988653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.05  E-value=0.66  Score=35.55  Aligned_cols=47  Identities=26%  Similarity=0.415  Sum_probs=31.4

Q ss_pred             eEEEEe-cChHHHHHHHHHH-hCCCEEE-EECCCCCCCCCCCCCCCHHHHh-hcCCEEEEe
Q 020160          160 RVGIVG-LGSIGSEVAKRLE-AFGCCVS-YNSRNKKPSVTYPFYPDVCELA-ANSDVLIIC  216 (330)
Q Consensus       160 ~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~~~~~~~~~~~~~~~~l~ell-~~aDvV~l~  216 (330)
                      ||+|+| .|+||+.+++.+. .-++++. .+|+..          ++.++. ..+|+|+=-
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------~~~~~~~~~~DvvIDF   51 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------PLSLLTDGNTEVVIDF   51 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------CTHHHHTTTCSEEEEC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------chhhhccccCCEEEEc
Confidence            689999 6999999999875 4567765 455421          223332 467877644

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.03  E-value=0.59  Score=37.14  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=24.6

Q ss_pred             eEEEEecChHHHHHHHHHHhC-CCEEEEECC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAF-GCCVSYNSR  189 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~  189 (330)
                      +|||=|||+||+.+.+.+... ..+|.+.+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999988754 567776543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.55  E-value=0.33  Score=36.69  Aligned_cols=60  Identities=12%  Similarity=0.055  Sum_probs=36.4

Q ss_pred             ceEEEEecChHHHHHHHHHH-hCCCEEEE-ECCCCCCCC----CCCC--CCCHHHHhh-cCCEEEEecc
Q 020160          159 KRVGIVGLGSIGSEVAKRLE-AFGCCVSY-NSRNKKPSV----TYPF--YPDVCELAA-NSDVLIICCA  218 (330)
Q Consensus       159 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~-~~~~~~~~~----~~~~--~~~l~ell~-~aDvV~l~~P  218 (330)
                      .++.|+|+|.+|+++++.+. .-|+++.+ +|..+....    +...  ...++++.+ ..++.++++|
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            37999999999999998764 45788764 455544321    2211  234444433 3555555555

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.52  E-value=0.78  Score=37.27  Aligned_cols=32  Identities=28%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             eEEEEecChHHHHHHHHHHhCCCEEEEECCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLEAFGCCVSYNSRNK  191 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  191 (330)
                      =|.|||.|..|...|..++.+|++|..++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.45  E-value=0.77  Score=37.88  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCCC
Q 020160          158 GKRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKKP  193 (330)
Q Consensus       158 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  193 (330)
                      +.+|-|.| -|.||+++|+.|...|++|+..+++...
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            34677888 5799999999999999999999887654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.27  E-value=0.81  Score=37.85  Aligned_cols=34  Identities=26%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             ceEEEEe-cChHHHHHHHHHHhCCCEEEEECCCCC
Q 020160          159 KRVGIVG-LGSIGSEVAKRLEAFGCCVSYNSRNKK  192 (330)
Q Consensus       159 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  192 (330)
                      |.+-|-| -+.||+++|++|...|++|+..+++..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            3455667 467999999999999999998887654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=0.76  Score=36.90  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             EEEEecChHHHHHHHHHHhCCCEEEEECCC
Q 020160          161 VGIVGLGSIGSEVAKRLEAFGCCVSYNSRN  190 (330)
Q Consensus       161 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  190 (330)
                      +.|||.|..|-..|..+..+|.+|+..+..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999988754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=80.12  E-value=0.77  Score=39.27  Aligned_cols=35  Identities=26%  Similarity=0.202  Sum_probs=30.0

Q ss_pred             eEEEEecChHHHHHHHHHH-----hCCCEEEEECCCCCCC
Q 020160          160 RVGIVGLGSIGSEVAKRLE-----AFGCCVSYNSRNKKPS  194 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~-----~~G~~V~~~~~~~~~~  194 (330)
                      -|.|||.|..|..+|..|.     ..|.+|+++++.+...
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            4899999999999999995     5799999999876543

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.06  E-value=0.53  Score=37.28  Aligned_cols=20  Identities=35%  Similarity=0.630  Sum_probs=18.5

Q ss_pred             eEEEEecChHHHHHHHHHHh
Q 020160          160 RVGIVGLGSIGSEVAKRLEA  179 (330)
Q Consensus       160 ~vgIiG~G~IG~~~A~~l~~  179 (330)
                      +|+|+|+|.+|+.+++.+..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHH
Confidence            69999999999999999875