Citrus Sinensis ID: 020163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEEccccEEEEEccccEEEEEEEEccEEEEcccccccEEEEEEEccccEEcEEEEcHHHHHHHHHHcccccccccHHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHccccEEEEHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccHHHHHcccccccccccccHcHccEHHHHHcccccccEEEEEEEcccccccccccEEEEEEccccccccccccccccccHHHcccEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEcHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHccccEEEcHHHHHHcccEEccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mgslqgpvfcpavrarqgglyntvpstgpvmkarffrselwgfkgltaVKTKVGVFTrqqnarkckivqctfssssngngsmaenfnendedfvNSSVVEAVevksgadgfmikmrdgrhlrcvhnnpqgghlpdyaphpaIVLKmedgtglllPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTkvgnetecvsfdlrpsdainIAVRCKVPIqvnkylaysdgmrviesgklsthspgsdgllfteldkpsgqpcldtkefNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Flexible Loop (DISEMBL)
MGSLQGPVFCPAvrarqgglyntvpstgpvMKARFFRSELWGFKGLTAVKTKVGvftrqqnarkckivqctfssssngngSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKlgqlrakrnlrkft
Low Complexity Region (SEG)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAenfnendedfVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Disordered region (IsUnstruct)
*******VFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTF*************************VVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE**************LFT********PCLDTKEFNLVRNMLIAAVEERYRDAAQWRDK**************
Disordered Region (DISOPRED)
****QGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKT***************************************EDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYS****************************************NLVRNMLIAAVEERYRDAAQWRD***************
Disordered Region (DISEMBL)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Disordered Region (DISPRO)
***LQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSS**************NDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES********************PSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q9FWS6	325	Bifunctional nuclease 1 O	yes	no	0.972	0.987	0.742	1e-141
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.993	0.996	0.706	1e-137
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.957	0.972	0.588	1e-108
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.975	0.972	0.513	3e-85
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.975	0.972	0.513	8e-85
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.975	0.972	0.513	5e-84
Q50604	164	Uncharacterized protein R	yes	no	0.342	0.689	0.226	0.0003

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  499 bits (1286), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/334 (74%), Positives = 280/334 (83%), Gaps = 13/334 (3%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIAR 176
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 177 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 236
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 237 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 296
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++ 
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291

Query: 297 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
            M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 292 KMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  488 bits (1255), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/331 (70%), Positives = 276/331 (83%), Gaps = 3/331 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct: 59  HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
            A  EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 299 QAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/326 (58%), Positives = 257/326 (78%), Gaps = 10/326 (3%)

Query: 3   SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           +++GP+ C AV   +     + N++  +G +  A  F   +  ++ +T + + +    ++
Sbjct: 2   AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
             A  C     +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60  NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPT 178
           +LRCVHNN QG ++P+ AP PAIVL++EDG+  LLPIIV +MPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175

Query: 179 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 238
           +YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235

Query: 239 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 298
           CKVPIQV++ LAYSDG+R +E  +++  +  SDGLLFTELD+P GQPC++ +EF L+RNM
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNM 295

Query: 299 LIAAVEERYRDAAQWRDKLGQLRAKR 324
           LIAAVEERY+DAA WRDKL  LR+KR
Sbjct: 296 LIAAVEERYKDAATWRDKLMLLRSKR 321

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  315 bits (806), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 169/329 (51%), Positives = 238/329 (72%), Gaps = 7/329 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV + PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298

Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 324
           RNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  313 bits (803), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 169/329 (51%), Positives = 238/329 (72%), Gaps = 7/329 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV + PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298

Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 324
           RNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  311 bits (796), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/329 (51%), Positives = 237/329 (72%), Gaps = 7/329 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV + PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
           A RCKVPIQVN+ +AY++G++V++     ++   SD    T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFDLV 298

Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 324
           RNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis GN=Rv1829 PE=4 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 139 HPAIVLKMEDGTGLLLPIIVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 198
            P ++L+  +G   L   I Q  +  +    + V+  RP  + +++++I  +G+ ++ VR
Sbjct: 17  QPVLLLREANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76

Query: 199 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 257
           +       ++A L   +       +    RPSD++ IA+R  VPI V + +    G+ +
Sbjct: 77  IVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129

Mycobacterium tuberculosis (taxid: 1773)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
224062099	326	predicted protein [Populus trichocarpa]	0.984	0.996	0.824	1e-159
255538728	327	conserved hypothetical protein [Ricinus	0.987	0.996	0.827	1e-156
359492154	327	PREDICTED: uncharacterized protein LOC10	0.981	0.990	0.809	1e-156
302142539	355	unnamed protein product [Vitis vinifera]	0.981	0.912	0.809	1e-155
224085706	328	predicted protein [Populus trichocarpa]	0.987	0.993	0.798	1e-152
449511603	327	PREDICTED: bifunctional nuclease 1-like	0.984	0.993	0.758	1e-146
449460235	327	PREDICTED: bifunctional nuclease 1-like	0.984	0.993	0.755	1e-146
255635435	328	unknown [Glycine max]	0.978	0.984	0.753	1e-141
15222221	325	bifunctional nuclease in basal defense r	0.972	0.987	0.742	1e-139
297842281	324	hypothetical protein ARALYDRAFT_476684 [	0.966	0.984	0.740	1e-139

>gi|224062099|ref|XP_002300754.1| predicted protein [Populus trichocarpa] gi|222842480|gb|EEE80027.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/331 (82%), Positives = 298/331 (90%), Gaps = 6/331 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CP VRA+Q G +   P TGP++KAR  RSELWGFKG    KTKVG+ +RQ 
Sbjct: 1   MVSLQGPVICPTVRAKQAGKH-AFPMTGPLVKARLVRSELWGFKGY---KTKVGLTSRQL 56

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C  VQC+ SSSS+GNGS AENFNENDED+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 57  KARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 116

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNVQIARPT+
Sbjct: 117 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 176

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQVVK+M+EKMG+EV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 177 YQVVKDMVEKMGFEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 236

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           KVPIQVNKYLAYSDGMRVIESGK    SP SDG+LFTELD+P+GQPCLDTKEFNLVRNM 
Sbjct: 237 KVPIQVNKYLAYSDGMRVIESGK-PIQSPASDGILFTELDRPTGQPCLDTKEFNLVRNMF 295

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
            AA EERY DAAQWRDKLGQ RAKRNL+K+T
Sbjct: 296 TAAFEERYGDAAQWRDKLGQFRAKRNLKKYT 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538728|ref|XP_002510429.1| conserved hypothetical protein [Ricinus communis] gi|223551130|gb|EEF52616.1| conserved hypothetical protein [Ricinus communis]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/331 (82%), Positives = 297/331 (89%), Gaps = 5/331 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CPAVRA+Q G Y T+P   P+ KAR  RS LW FKG++  KTK+  F+ QQ
Sbjct: 1   MTSLQGPVICPAVRAKQAGTY-TLPLNVPLFKARLVRSGLWRFKGISDYKTKLTGFSPQQ 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR   + QC  SSSSNGNG+ AENFN NDED+V+SSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  -ARNTTL-QCCLSSSSNGNGNTAENFNVNDEDYVHSSVVEAVEVKSGADGFMIKMRDGRH 117

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           +RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNVQIARPTL
Sbjct: 118 VRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 177

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET+CVSFDLRPSDAINIAVRC
Sbjct: 178 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETQCVSFDLRPSDAINIAVRC 237

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           KVPIQVNKYLAYSDGMRVIESGK+ THSPGSDGLLFTELD+P+GQPCLDTKEFNLV N++
Sbjct: 238 KVPIQVNKYLAYSDGMRVIESGKI-THSPGSDGLLFTELDRPTGQPCLDTKEFNLVSNLM 296

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
            A VEERY+DAAQWRD LGQ RAKRNL+K+T
Sbjct: 297 NAVVEERYQDAAQWRDMLGQFRAKRNLKKYT 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492154|ref|XP_003634371.1| PREDICTED: uncharacterized protein LOC100855103 [Vitis vinifera]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/326 (80%), Positives = 292/326 (89%), Gaps = 2/326 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNVQIARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 179

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 180 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 239

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRNML
Sbjct: 240 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRNML 299

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRN 325
           IAAVEERYRDAAQWRDKL Q R+KRN
Sbjct: 300 IAAVEERYRDAAQWRDKLTQFRSKRN 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142539|emb|CBI19742.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/326 (80%), Positives = 292/326 (89%), Gaps = 2/326 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 29  MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 87

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 88  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 147

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNVQIARPTL
Sbjct: 148 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 207

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 208 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 267

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRNML
Sbjct: 268 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRNML 327

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRN 325
           IAAVEERYRDAAQWRDKL Q R+KRN
Sbjct: 328 IAAVEERYRDAAQWRDKLTQFRSKRN 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085706|ref|XP_002307674.1| predicted protein [Populus trichocarpa] gi|222857123|gb|EEE94670.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/332 (79%), Positives = 295/332 (88%), Gaps = 6/332 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV  PAVRA+Q G Y + P TGP++K    RSEL GFKGL+  K+KV + +RQ 
Sbjct: 1   MGSLQGPVIYPAVRAKQAGTY-SFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C +VQC+ SSSS+GNGS AENFNEN  D+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 60  KARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNPQGGHLPD APHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNVQIARPT+
Sbjct: 120 LRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 179

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQVVKEM+EKMGYEV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMVEKMGYEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 239

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHS-PGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 298
           KVPIQVNKYLAYSDGMRV+    L  +S P  +GLLFTELD+P+GQPCLDTKEF+LVRNM
Sbjct: 240 KVPIQVNKYLAYSDGMRVMN---LKANSVPCFNGLLFTELDRPTGQPCLDTKEFDLVRNM 296

Query: 299 LIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
           L AA+EERY DAAQWRDKLGQ RAKRNL+K+T
Sbjct: 297 LTAAIEERYGDAAQWRDKLGQFRAKRNLKKYT 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511603|ref|XP_004164003.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/327 (75%), Positives = 286/327 (87%), Gaps = 2/327 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           +VPIQVNKYLAYSDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRNML
Sbjct: 240 QVPIQVNKYLAYSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRNML 299

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRNL 326
           IAAVEERYRDAAQWRDKL  LRA+RNL
Sbjct: 300 IAAVEERYRDAAQWRDKLNLLRARRNL 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460235|ref|XP_004147851.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/327 (75%), Positives = 286/327 (87%), Gaps = 2/327 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
           +VPIQVNKYLA+SDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRNML
Sbjct: 240 QVPIQVNKYLAFSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRNML 299

Query: 300 IAAVEERYRDAAQWRDKLGQLRAKRNL 326
           IAAVEERYRDAAQWRDKL  LRA+RNL
Sbjct: 300 IAAVEERYRDAAQWRDKLNLLRARRNL 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635435|gb|ACU18070.1| unknown [Glycine max]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/329 (75%), Positives = 277/329 (84%), Gaps = 6/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPV-MKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           M S+QGPV CP+VRA+Q G + ++P  G V M  R  RSE WG  G    K K G  +  
Sbjct: 1   MSSVQGPVVCPSVRAKQVG-FCSIPMIGAVKMNVRRIRSEFWGLNG---AKAKPGFLSCH 56

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
            N RKCK V CTF+S SN +GS A+NFNE DED+V SSV+EAVEVKSGADGF+IKMRDGR
Sbjct: 57  INTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGR 116

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPT 178
           HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAA+RNV IARPT
Sbjct: 117 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPT 176

Query: 179 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 238
           LYQVVKEMI+KMGYEV+ VRVT+RVHEAYFAQLYLTKVGN+ E VSFDLRPSDAINIAVR
Sbjct: 177 LYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAVR 236

Query: 239 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 298
           CKVPIQVNKYLAYSDGMRVIESGKLST  PG DG LFTE+D+PSGQPC +T EFNL+ NM
Sbjct: 237 CKVPIQVNKYLAYSDGMRVIESGKLSTQFPGMDGRLFTEMDRPSGQPCAETTEFNLLHNM 296

Query: 299 LIAAVEERYRDAAQWRDKLGQLRAKRNLR 327
           L A VEERY+DAA +RD+L QLRA +N++
Sbjct: 297 LKAVVEERYKDAALFRDQLNQLRAGKNMK 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222221|ref|NP_177671.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699096|ref|NP_849890.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699098|ref|NP_849891.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|75172895|sp|Q9FWS6.1|BBD1_ARATH RecName: Full=Bifunctional nuclease 1; Short=AtBBD1 gi|10120446|gb|AAG13071.1|AC023754_9 Unknown protein [Arabidopsis thaliana] gi|15809929|gb|AAL06892.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|17978881|gb|AAL47412.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|21593016|gb|AAM64965.1| wound-responsive protein, putative [Arabidopsis thaliana] gi|332197588|gb|AEE35709.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197589|gb|AEE35710.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197590|gb|AEE35711.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/334 (74%), Positives = 280/334 (83%), Gaps = 13/334 (3%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIAR 176
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 177 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 236
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 237 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 296
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++ 
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291

Query: 297 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
            M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 292 KMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842281|ref|XP_002889022.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata] gi|297334863|gb|EFH65281.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/335 (74%), Positives = 278/335 (82%), Gaps = 16/335 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFK--GLTAVKTKVGVFT 57
           M SLQ PV CPA+R RQ G   + V  TG   + +F+ +   GFK  G T +        
Sbjct: 1   MRSLQAPVVCPAIRPRQVGACASLVNYTGLKPRRQFWGNRTKGFKSQGTTTI-------- 52

Query: 58  RQQNARKC-KIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
                R C K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMR
Sbjct: 53  ---TLRLCDKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMR 109

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIA 175
           DGR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIA
Sbjct: 110 DGRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA 169

Query: 176 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 235
           RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQLYL+KVGN +ECVSFDLRPSDAINI
Sbjct: 170 RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLYLSKVGNASECVSFDLRPSDAINI 229

Query: 236 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 295
           AVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++
Sbjct: 230 AVRCKIPIQVNKYLAYSDGMRVIESGKISTPTPASDGLLFTEQDRPNGQACLDTKEFNIL 289

Query: 296 RNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
             M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 290 SKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 324

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.975	0.990	0.723	4.1e-120
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.993	0.996	0.679	1.5e-115
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.569	0.552	0.375	1.1e-25
UNIPROTKB|Q50604	164	MT1877 "Uncharacterized protei	0.412	0.829	0.265	6e-05

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 241/333 (72%), Positives = 271/333 (81%)

Query:     1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
             M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG +    VK++ G  T  
Sbjct:     1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNR-TKGVKSQ-GT-TTT 52

Query:    60 QNARKC-KIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDG 118
                R C K ++C FSS S+GNGS A          VNSSVVEAVEVKSGADGFM+KMRDG
Sbjct:    53 ITLRLCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDG 112

Query:   119 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARP 177
             R LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIARP
Sbjct:   113 RQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARP 172

Query:   178 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 237
             T+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIAV
Sbjct:   173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAV 232

Query:   238 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 297
             RCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++  
Sbjct:   233 RCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSK 292

Query:   298 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
             M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct:   293 MMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 225/331 (67%), Positives = 266/331 (80%)

Query:     1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
             M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct:     1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query:    61 NARKCKIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             + R+ K ++C FSS S+G GS A          V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct:    59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query:   121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTL 179
             LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIV +MPSVLLMAAM NVQIARPT+
Sbjct:   119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query:   180 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 239
             YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct:   179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query:   240 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 299
             KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct:   239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Query:   300 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 330
              A  EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct:   299 QAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 74/197 (37%), Positives = 111/197 (56%)

Query:   128 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVQMPSV--LLMAAMRNVQIARPTLYQVVK 184
             P G G L  +   P I LK+      LLP+IV   +V  LL   ++      P  +Q V 
Sbjct:   132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVS 190

Query:   185 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQ 244
              +++K+GYEV++V++T R+   Y+A L L K G + E +  D RPSDAIN+A  C+ PI 
Sbjct:   191 AVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQAPIY 249

Query:   245 VNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 304
             VNK +   + +++   G+  +  P  + +L +  D P   P   ++E  LVRNM +A+ E
Sbjct:   250 VNKAIVLEEAIKIGYGGRPQSAKPVFNVILDSAPDGPD--PL--SEELKLVRNMDLASKE 305

Query:   305 ERYRDAAQWRDKLGQLR 321
             ERY DAA WRD+L  L+
Sbjct:   306 ERYIDAAMWRDRLKNLQ 322

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

UNIPROTKB|Q50604 MT1877 "Uncharacterized protein Rv1829/MT1877" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 112 (44.5 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 39/147 (26%), Positives = 73/147 (49%)

Query:   140 PAIVLKMEDGTGLLLPI-IVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 198
             P ++L+  +G   L PI I Q  +  +    + V+  RP  + +++++I  +G+ ++ VR
Sbjct:    18 PVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76

Query:   199 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 258
             +       ++A L   +  N    +    RPSD++ IA+R  VPI V + +    G+ + 
Sbjct:    77 IVDLQEGTFYADLIFDR--N----IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLIP 130

Query:   259 -ESGKLSTHSPGSDGL-LFTE-LDKPS 282
              ES + +T +   D +  F E LD  S
Sbjct:   131 DESDEEATTAVREDEVEKFKEFLDSVS 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      330       320   0.00084  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.61u 0.17s 22.78t   Elapsed:  00:00:01
  Total cpu time:  22.61u 0.17s 22.78t   Elapsed:  00:00:01
  Start:  Sat May 11 05:13:43 2013   End:  Sat May 11 05:13:44 2013

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VH2	BBD2_ARATH	3, ., 1, ., -, ., -	0.7069	0.9939	0.9969	no	no
B8A8D2	BBD1_ORYSI	3, ., 1, ., -, ., -	0.5136	0.9757	0.9728	N/A	no
Q9FWS6	BBD1_ARATH	3, ., 1, ., -, ., -	0.7425	0.9727	0.9876	yes	no
Q6YZM6	BBD2_ORYSJ	3, ., 1, ., -, ., -	0.5889	0.9575	0.9723	yes	no
Q09LL3	BBD_ORYMI	3, ., 1, ., -, ., -	0.5136	0.9757	0.9728	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	1e-17
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	2e-14

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 137 APHPAIVLKMEDGTGLLLPIIVQMPSVL-LMAAMRNVQIARPTLYQVVKEMIEKMGYEVR 195
           +  P ++L+ EDG   +LPI +       +  A+  V+  RP  + ++K+++E +G +V 
Sbjct: 12  SGAPVVLLRDEDG-ERVLPIWIGPAEAQAIALALEGVEPPRPLTHDLLKDVLEALGAKVE 70

Query: 196 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 247
            V +       ++A+L L   G E      D RPSDAI +A+R   PI V +
Sbjct: 71  RVVIDDLKDGTFYARLVLRDGGEEE----IDARPSDAIALALRTGAPIYVTE 118

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 135 DYAPH--PAIVLKMEDGTGLLLPI-IVQMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMG 191
                  P +VL +E G   +LPI I    ++ +  A+  V+  RP  + ++ E+ E++G
Sbjct: 13  FVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELG 72

Query: 192 YEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 247
             V  V +   +   Y+A L L +   + +    D RPSDAI +A+R   PI V +
Sbjct: 73  ARVEKVVIDDLIDNTYYATLILEQDDGKIQ---IDARPSDAIALALRVGAPIYVAE 125

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	98.22
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	98.16
PRK05298	652	excinuclease ABC subunit B; Provisional	94.66
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	94.46
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	93.8
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	93.31
PRK07883	557	hypothetical protein; Validated	93.12
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	92.27
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	91.92
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	91.54
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	91.51
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	91.36
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	91.32
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	91.21
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	91.06
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	90.99
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	88.59

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=6.7e-34  Score=243.97  Aligned_cols=120  Identities=30%  Similarity=0.494  Sum_probs=102.2

Q ss_pred             CCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEe
Q 020163          136 YAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLT  214 (330)
Q Consensus       136 ~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~L~l~  214 (330)
                      ..++|++||++++++ +.||||| ..||.+|+.++++..++||+|||||.++++++|.++.+|+|++++||+|||+|+++
T Consensus        11 ~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~   89 (135)
T PF02577_consen   11 PSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLVLR   89 (135)
T ss_dssp             TTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEEe
Confidence            356789999999875 8999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163          215 KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  259 (330)
Q Consensus       215 ~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e  259 (330)
                      +++   ++..+|+||||||+||+|+++||||+++|++++|+++..
T Consensus        90 ~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~  131 (135)
T PF02577_consen   90 QGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE  131 (135)
T ss_dssp             ETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred             cCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence            776   789999999999999999999999999999999999874

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-32  Score=240.32  Aligned_cols=123  Identities=27%  Similarity=0.464  Sum_probs=112.2

Q ss_pred             CCCCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEE
Q 020163          134 PDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLY  212 (330)
Q Consensus       134 d~~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~L~  212 (330)
                      .+-...|++++...+++++.||||| ..+|.+|+.++++..++||+||||+.++++.++.++.+|+|++++||||||+|+
T Consensus        14 ~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~   93 (151)
T COG1259          14 VPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLI   93 (151)
T ss_pred             ecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEE
Confidence            3345667677766777778999999 899999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163          213 LTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  259 (330)
Q Consensus       213 l~~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e  259 (330)
                      +++++   ..+.+||||||||+||+|.++||||.|+|+++++++..+
T Consensus        94 ~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~  137 (151)
T COG1259          94 LEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED  137 (151)
T ss_pred             EEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence            99987   469999999999999999999999999999998888764

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.22  E-value=2.4e-06  Score=58.34  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163          290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  323 (330)
Q Consensus       290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~  323 (330)
                      ..+..|+..|..|++ ++||+||.|||+|..|+++
T Consensus         2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            356789999999998 9999999999999999864

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=98.16  E-value=2.5e-06  Score=76.76  Aligned_cols=38  Identities=26%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020163          288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  325 (330)
Q Consensus       288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~  325 (330)
                      .+.++.+|++.|++.|+ |+||+||.+||||+.|+.+..
T Consensus       134 ~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~  172 (176)
T COG3880         134 PKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG  172 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            56889999999999998 999999999999999997653

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=94.66  E-value=0.047  Score=58.28  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhcc
Q 020163          290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRNL  326 (330)
Q Consensus       290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~~  326 (330)
                      ..++.|+++|++|.+ ++||+||++||+|+.|++....
T Consensus       613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~~  650 (652)
T PRK05298        613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELLG  650 (652)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            456778998999987 9999999999999999876543

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=94.46  E-value=0.053  Score=57.17  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             hhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020163          289 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  325 (330)
Q Consensus       289 ~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~~  325 (330)
                      .+.++.|+++|.+|.+ -+||+||+|||+|++|++...
T Consensus       623 ~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~  660 (663)
T COG0556         623 EKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL  660 (663)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            3556778887777776 999999999999999997643

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=93.80  E-value=0.06  Score=57.71  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHH
Q 020163          290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR  321 (330)
Q Consensus       290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~  321 (330)
                      ..++.|+++|++|.+ ++||+||++||+|+.|+
T Consensus       623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            345678888888887 99999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=93.31  E-value=0.1  Score=55.48  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163          290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  324 (330)
Q Consensus       290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~  324 (330)
                      .-++.|++.|++|.+ ++||+||++||+|..+++-.
T Consensus       202 ~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~  237 (598)
T PRK00558        202 EVLKELEEKMEEASENLEFERAARYRDQIQALRRVQ  237 (598)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            345778888888887 99999999999999998643

>PRK07883 hypothetical protein; Validated

Probab=93.12  E-value=0.11  Score=54.68  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      ++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  439 (557)
T PRK07883        408 LAALRARIDRLAAAERFEEAARLRDRLAALLR  439 (557)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            5678888888887 999999999999999985

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=92.27  E-value=0.18  Score=52.93  Aligned_cols=32  Identities=9%  Similarity=0.250  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      -++.|++.|++|-+ .+||+||++||.|..++.
T Consensus       193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~  225 (519)
T PRK12306        193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIEN  225 (519)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            35678888888887 999999999999999984

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=91.92  E-value=0.19  Score=54.35  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163          291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  323 (330)
Q Consensus       291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~  323 (330)
                      -++.|++.|++|.+ .+||+||++||+|+.++.-
T Consensus       202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~  235 (694)
T PRK14666        202 LVDALRTEMEAASEALEFERAAVLRDQIRAVERT  235 (694)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35678888888887 9999999999999999853

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=91.54  E-value=0.24  Score=52.55  Aligned_cols=31  Identities=29%  Similarity=0.441  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      ++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       201 ~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        201 ADPLRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4678888888887 999999999999999984

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=91.51  E-value=0.24  Score=52.50  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      ++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  227 (574)
T TIGR00194       196 IKELEQKMEKASENLEFEEAARIRDQIAAVRE  227 (574)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4668888888887 999999999999999984

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=91.36  E-value=0.24  Score=53.60  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      ++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~  238 (691)
T PRK14672        207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRC  238 (691)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4678888888887 999999999999999984

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=91.32  E-value=0.24  Score=52.43  Aligned_cols=33  Identities=15%  Similarity=0.102  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163          291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  323 (330)
Q Consensus       291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~  323 (330)
                      -++.|++.|++|-+ .+||+||++||+|..++.-
T Consensus       200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~  233 (567)
T PRK14667        200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALENL  233 (567)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            35678888888887 9999999999999999753

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=91.21  E-value=0.25  Score=52.40  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163          292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  323 (330)
Q Consensus       292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~  323 (330)
                      ++.|++.|++|-+ .+||+||++||+|..++.-
T Consensus       179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~  211 (574)
T PRK14670        179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEI  211 (574)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4678888888887 9999999999999999853

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=91.06  E-value=0.27  Score=52.64  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          292 FNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       292 ~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      ++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~  248 (621)
T PRK14671        217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKR  248 (621)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            5678888888887 999999999999999974

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=90.99  E-value=0.27  Score=52.66  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163          291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  323 (330)
Q Consensus       291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~  323 (330)
                      -++.|++.|++|-+ .+||+||++||+|+.++.-
T Consensus       204 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~  237 (624)
T PRK14669        204 LARSLRARMEAAALEMQFELAAKYRDLITTVEEL  237 (624)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            34678888888887 9999999999999998753

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=88.59  E-value=0.56  Score=49.96  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020163          291 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  322 (330)
Q Consensus       291 e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~  322 (330)
                      -+..|++.|++|-+ .+||.||++||+|..++.
T Consensus       203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~  235 (581)
T COG0322         203 VLQELEEKMEEASENLDFERAARLRDQIKALEK  235 (581)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            35678888888887 999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	2e-22

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 90.9 bits (225), Expect = 2e-22
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 112 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMR 170
           M K      ++ +  +            P ++L   +GT  +LPI +       L  AM 
Sbjct: 13  MRKAW----VKTLALDRVSNT-------PVVILG-IEGTNRVLPIWIGACEGHALALAME 60

Query: 171 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL------TKVGNETECVS 224
            ++  RP  + ++  ++E +   V  V +       ++A L +       +   E   + 
Sbjct: 61  KMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALID 120

Query: 225 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 259
            D RPSDAI +AV+   PI V+  L     + +  
Sbjct: 121 IDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	97.77
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	95.71
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	94.92

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=5.3e-38  Score=277.48  Aligned_cols=129  Identities=24%  Similarity=0.367  Sum_probs=118.9

Q ss_pred             CCCCCCCCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 020163          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  208 (330)
Q Consensus       130 ~G~Ld~~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFy  208 (330)
                      +.++|+++++|+|||++++++ |+||||| ..||.+|+.++++..++||+|||||.++++++|+++.+|+|++++||+||
T Consensus        20 gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtfy   98 (164)
T 1vjl_A           20 TLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFY   98 (164)
T ss_dssp             EEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEEE
Confidence            789999999999999998875 8999999 99999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEe------ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163          209 AQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  259 (330)
Q Consensus       209 A~L~l~------~~g~~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e  259 (330)
                      |+|+|+      +++++.+.+++|+|||||||||+|+++||||+|+|++++|+++++
T Consensus        99 A~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~~  155 (164)
T 1vjl_A           99 ATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  155 (164)
T ss_dssp             EEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             EEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCcc
Confidence            999999      654333678999999999999999999999999999999999864

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=95.71  E-value=0.0052  Score=63.57  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020163          290 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  323 (330)
Q Consensus       290 ~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~  323 (330)
                      +.++.|+++|++|.+ ++||+||+|||+|+.|+++
T Consensus       626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~  660 (661)
T 2d7d_A          626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE  660 (661)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence            456778888888887 9999999999999999754

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=94.92  E-value=0.0044  Score=64.09  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163          288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  324 (330)
Q Consensus       288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~  324 (330)
                      ..+.++.|+++|++|.+ ++||+||+|||+|+.|+++.
T Consensus       609 ~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~  646 (664)
T 1c4o_A          609 LRERIAELELAMWQAAEALDFERAARLRDEIRALEARL  646 (664)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            34567888988888887 99999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	2e-26

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score =  100 bits (250), Expect = 2e-26
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 135 DYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYE 193
           D   +  +V+   +GT  +LPI +       L  AM  ++  RP  + ++  ++E +   
Sbjct: 13  DRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEAR 72

Query: 194 VRLVRVTKRVHEAYFAQLYL------TKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 247
           V  V +       ++A L +       +   E   +  D RPSDAI +AV+   PI V+ 
Sbjct: 73  VDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSD 132

Query: 248 YLAYSDGMRVIES 260
            L     + +  +
Sbjct: 133 NLVEKHSIELEVN 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	97.78

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.3e-36  Score=261.60  Aligned_cols=127  Identities=24%  Similarity=0.386  Sum_probs=115.1

Q ss_pred             CCCCCCCCcEEEEEEeCCCceEEEEEE-cchHHHHHHHhhccCCCCCChHHHHHHHHHHhCCEEeEEEEEeEECCEEEEE
Q 020163          132 HLPDYAPHPAIVLKMEDGTGLLLPIIV-QMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ  210 (330)
Q Consensus       132 ~Ld~~a~~pvIVL~eedg~~r~LPI~I-e~eA~aI~~aL~~~~~~RPlTHDLL~~ile~lg~~v~~V~I~~~~dGvFyA~  210 (330)
                      +++..+++|+|||++++++ +.||||| ..||.+|+.++++..++||+|||||.++++++|+++.+|+|+++++|+|||+
T Consensus        11 ~~~~~~~~pvvlL~~~~~~-~~LPI~Ig~~EA~~I~~~l~~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~fyA~   89 (151)
T d1vjla_          11 ALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYAT   89 (151)
T ss_dssp             EECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEEEE
T ss_pred             EEecCCCCcEEEEEECCCC-eEEEEEEChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEEecCCeEEE
Confidence            4556678899999998775 8999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCc------cceEEEEeCChHHHHHHHHHcCCCEEEehhhHhccCeeeee
Q 020163          211 LYLTKVGN------ETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  259 (330)
Q Consensus       211 L~l~~~g~------~~e~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~i~e  259 (330)
                      |+++++..      +.+.++|||||||||+||+|+++||||+++|++++|+.+..
T Consensus        90 L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~~~  144 (151)
T d1vjla_          90 LVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  144 (151)
T ss_dssp             EEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             EEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCCCc
Confidence            99976421      13678999999999999999999999999999999997653

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=8.5e-06  Score=58.42  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             ChhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020163          288 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  324 (330)
Q Consensus       288 ~~~e~~~L~~~L~~ave-E~YE~AA~lRDeI~~l~~~~  324 (330)
                      ..+.++.|++.|.+|.+ .+||+||+|||+|+.|++..
T Consensus        15 l~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l   52 (56)
T d1e52a_          15 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF   52 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            35668889999999988 99999999999999998753