Citrus Sinensis ID: 020166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccEEEEEEcccEEEccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccccccEEEcccHHHHHHHEHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHEHEcccEEEEEccccccccccEEccccEHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
MKNCERIANLALAGLtlapllvkvdpnLNVILTACLTVYVGcyrsvkptppsetmsnehamrfpfVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKrflpnhwnedliiwhfpyfrsleieFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIemlslgsfkTGAILLAGLFVYDIFWVFFtpvmllfptrdtarpfsmlglgdiviPGIFVALALRfdvsrgkgsryFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLlefdesktAAVVSQesgdaktskkve
Flexible Loop (DISEMBL)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAavvsqesgdaktskkve
Low Complexity Region (SEG)
MKNCERIanlalagltlapllVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMllslfllfkflskDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE
Disordered region (IsUnstruct)
*****RIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSV*************AMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFD**********************
Disordered Region (DISOPRED)
*******ANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYR***************AMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLE************************
Disordered Region (DISEMBL)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDES********************
Disordered Region (DISPRO)
*KNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFD**********************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
O81062	344	Signal peptide peptidase	yes	no	0.990	0.950	0.780	1e-148
Q6ZGL9	343	Signal peptide peptidase	yes	no	1.0	0.962	0.760	1e-141
B9FJ61	343	Signal peptide peptidase	yes	no	1.0	0.962	0.755	1e-140
Q8TCT9	377	Minor histocompatibility	yes	no	0.912	0.798	0.406	9e-59
Q9D8V0	378	Minor histocompatibility	yes	no	0.854	0.746	0.420	5e-57
P49049	468	Intramembrane protease 2	yes	no	0.539	0.380	0.421	3e-33
Q9UTA3	295	Probable intramembrane pr	yes	no	0.787	0.881	0.310	1e-31
Q3TD49	578	Signal peptide peptidase-	no	no	0.439	0.250	0.331	1e-20
P34248	587	Probable intramembrane pr	yes	no	0.503	0.282	0.325	2e-20
Q5F383	596	Signal peptide peptidase-	no	no	0.651	0.360	0.281	2e-20

>sp|O81062|SIP_ARATH Signal peptide peptidase OS=Arabidopsis thaliana GN=SPP PE=2 SV=1

 Score =  523 bits (1348), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/342 (78%), Positives = 300/342 (87%), Gaps = 15/342 (4%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER ANLALAGLTLAPL+V+V+PNLNVILTAC+TVYVGC+RSVK TPP+ETMS EHA
Sbjct: 1   MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVNAVLT YFFVLGI+ALSAT+LPA++RFLPN WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           +LI+W FPYF+SLE+EFT+SQ++A IPGTFFCAWYA +KHWLANN LGL+FCIQGIEMLS
Sbjct: 121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLF YDIFWVFFTPVM            LLFPT D  RP+SMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSR +  +YF SAF+GY VG++LTI+VMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLA+HCIWNG++K LL FDESKT    + ES   KTS++V 
Sbjct: 301 GFLASHCIWNGDIKPLLAFDESKTEEATTDES---KTSEEVN 339

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm (By similarity). Plays a critical role in the development and function of the reproductive tissues, especially in pollen development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|Q6ZGL9|SIP1_ORYSJ Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica GN=SPP1 PE=2 SV=1

 Score =  502 bits (1292), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/343 (76%), Positives = 291/343 (84%), Gaps = 13/343 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MK  ER ANLALAGL+LAPL+VKV+PN+NVILTACL VYVGCYRSVKPTPPSETMS EHA
Sbjct: 1   MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVNAVLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           + I+W  P+F SL +EFT+SQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct: 121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLF YDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESK-TAAVVSQESGDAKTSKKVE 330
           GF+A HC+WNGEVK LLE++ESK       +E  D+K +KK E
Sbjct: 301 GFVAVHCLWNGEVKPLLEYNESKAEEEDAVEEDTDSKQNKKEE 343

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|B9FJ61|SIP2_ORYSJ Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica GN=SPP2 PE=2 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/343 (75%), Positives = 288/343 (83%), Gaps = 13/343 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MK  ER ANLALAGL+LAPL+VKV+PN NVILTACL VYVGCYRSVKPTPP+ETMS EHA
Sbjct: 1   MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFP VGSAMLLSLFLLFKFLSKDLVN VLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct: 61  MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           + I+W  P F SL +EFTRSQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct: 121 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILL+GLF YDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESK-TAAVVSQESGDAKTSKKVE 330
           GF+A HC+WNGEVK LLE++ESK       +E  D+K +KK E
Sbjct: 301 GFVAVHCLWNGEVKPLLEYNESKAEEEEACEEDTDSKQNKKKE 343

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane (By similarity). Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q8TCT9|HM13_HUMAN Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1

 Score =  227 bits (579), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/337 (40%), Positives = 192/337 (56%), Gaps = 36/337 (10%)

Query: 29  NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLS 82
           +++L A L ++ G  RSV+       +   ET+++  A RFP + S  LL L+L FK  S
Sbjct: 38  SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query: 83  KDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---E 136
           ++ +N +L+ YFFVLGI+ALS TI P + +F P  +      L+          EI   E
Sbjct: 98  QEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYE 157

Query: 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
           F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct: 158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query: 197 YDIFWVFFT------------PVMLLFPTRD------TARPFSMLGLGDIVIPGIFVALA 238
           YD+FWVF T            P+ L+FP +D       A  F+MLGLGD+VIPGIF+AL 
Sbjct: 218 YDVFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALL 276

Query: 239 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 297
           LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct: 277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query: 298 NGEVKQLLEFDESK----TAAVVSQESGDAKTSKKVE 330
            GEV ++  ++ES      A   S+E  +A  SK +E
Sbjct: 337 KGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. May play a role in graft rejection (By similarity). May be necessary for the removal of the signal peptide that remains attached to the hepatitis C virus core protein after the initial proteolytic processing of the polyprotein. Involved in the intramembrane cleavage of the integral membrane protein PSEN1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9D8V0|HM13_MOUSE Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1

 Score =  221 bits (564), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/314 (42%), Positives = 183/314 (58%), Gaps = 32/314 (10%)

Query: 29  NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLS 82
           +++L A L ++ G  RSV+       +   ET+++  A RFP + S  LL L+L FK  S
Sbjct: 38  SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query: 83  KDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW---NEDLIIWHFPYFRSLEI---E 136
           ++ +N +L+ YFFVLGI+ALS TI P + +F P ++      L+          EI   E
Sbjct: 98  QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query: 137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
           F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct: 158 FDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query: 197 YDIFWVFFT------------PVMLLFPTRD------TARPFSMLGLGDIVIPGIFVALA 238
           YDIFWVF T            P+ L+FP +D       A  F+MLGLGDIVIPGIF+AL 
Sbjct: 218 YDIFWVFGTNVMVTVAKSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALL 276

Query: 239 LRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 297
           LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     + 
Sbjct: 277 LRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALA 336

Query: 298 NGEVKQLLEFDESK 311
            GEV ++  ++ES 
Sbjct: 337 KGEVAEMFSYEESN 350

Catalyzes intramembrane proteolysis of some signal peptides after they have been cleaved from a preprotein, resulting in the release of the fragment from the ER membrane into the cytoplasm. Required to generate lymphocyte cell surface (HLA-E) epitopes derived from MHC class I signal peptides. Involved in the intramembrane cleavage of the integral membrane protein PSEN1 (By similarity). May play a role in graft rejection.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P49049|IMP2_CAEEL Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 117/209 (55%), Gaps = 31/209 (14%)

Query: 134 EIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAG 193
           +I+F R  IIA +  +     +  ++HW+ NN +G++F I GIE L L SFK G++LL G
Sbjct: 242 KIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVG 301

Query: 194 LFVYDIFWVFFT------------PVMLLFPT---RD---TARPFSMLGLGDIVIPGIFV 235
           LF YDIFWVF T            P++L FP    R+    A   SMLGLGDIVIPGIF+
Sbjct: 302 LFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFI 361

Query: 236 ALALRFD-----------VSRG--KGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLY 282
           AL  RFD             +G  KG  YF    + Y  GL +T+ VM+ F+AAQPALLY
Sbjct: 362 ALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLY 421

Query: 283 IVPAVIGFLAAHCIWNGEVKQLLEFDESK 311
           +VP  +       +  GE+  L  +DES+
Sbjct: 422 LVPCCLFVPLLLAVIRGELSALWNYDESR 450

May act as intramembrane protease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q9UTA3|YL8H_SCHPO Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.17 PE=3 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 143/309 (46%), Gaps = 49/309 (15%)

Query: 33  TACLTVYVGCYRSVKPTPPSET--MSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVL 90
           +A  TVY+G   S +   P E   ++   A+ FP  G   L+ ++L  ++LSK+ +  +L
Sbjct: 9   SALFTVYIGAKWSAQEEEPEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEYIQLIL 68

Query: 91  TCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTF 150
             Y       A  A+I+  V+ F P                      T  +I A +    
Sbjct: 69  QGY-------ASLASIICFVRSFNPKT--------------------TFGKITATMSSIA 101

Query: 151 FCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVML- 209
              +Y   KHW+A+N L  A     I ++ + S+ TGA+LL  LF YDI++VF T VM+ 
Sbjct: 102 IALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVT 161

Query: 210 -----------LFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSR--------GKGSR 250
                      + P        SMLGLGDIV+PG+ +AL  RFD+           K S 
Sbjct: 162 VATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHST 221

Query: 251 YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDES 310
           YF++ F+ Y +GL +T   + +F+AAQPALLY+ PA I        +  E+K L  F   
Sbjct: 222 YFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSFRSE 281

Query: 311 KTAAVVSQE 319
                  Q+
Sbjct: 282 TEDETDEQD 290

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q3TD49|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 33/178 (18%)

Query: 157 SQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP---------- 206
            Q  W+  +TLG+AFC+  ++ + L +FK   +LL  LF+YDIF+VF TP          
Sbjct: 311 DQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIM 370

Query: 207 -----------------VMLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDV 243
                            ++L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+
Sbjct: 371 VEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDI 430

Query: 244 SRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 301
                  YF +  + Y +GL++T + +   Q  QPALLY+VP  +       +W  E+
Sbjct: 431 QVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRREL 488

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Functions in ITM2B and TNF processing. Catalyzes the intramembrane cleavage of the anchored fragment of shed TNF-alpha (TNF), which promotes the release of the intracellular domain (ICD) for signaling to the nucleus. May play a role in the regulation of innate and adaptive immunity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P34248|YKK0_YEAST Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL100C PE=1 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 40/206 (19%)

Query: 155 YASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMLLFPTR 214
           Y S   WL +N + +   I  I  L L + K+GA++L  LF YDI +VF T VM+   T 
Sbjct: 323 YLSPNDWLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATN 382

Query: 215 -------------DTAR---PFSMLGLGDIVIPGIFVALALRFDVSR------------- 245
                        +TA+    FS+LGLGDI +PG+F+A+  ++D+ +             
Sbjct: 383 LDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFL 442

Query: 246 --GKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPA-VIGFLAAHCIWNGEVK 302
                 +YF +A + Y   LV  ++ ++ F  AQPALLYIVP+ +I  +   C WN + K
Sbjct: 443 NWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVAC-WNKDFK 501

Query: 303 QL-------LEFDESKTAAVVSQESG 321
           Q        +E D+S   A+  +E+ 
Sbjct: 502 QFWNFQYDTIEVDKSLKKAIEKKENS 527

May act as intramembrane protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q5F383|SPP2B_CHICK Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 127/281 (45%), Gaps = 66/281 (23%)

Query: 70  MLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATI------LPAVKRF------LPNH 117
           M  S+ +L  F    LV       + ++GI  L+A+I       P V+RF      +P++
Sbjct: 228 MCCSMLVLLYFFYDHLV-------YVIIGIFCLAASIGLYSCLSPFVRRFPLGKCRIPDN 280

Query: 118 WNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAW----YASQKHWLANNTLGLAFCI 173
                   + PYF        R  ++A    +    W       Q  W+  + LG+AFC+
Sbjct: 281 --------NLPYFHKRPQ--VRILLLAVFCISVSVVWGVFRNEDQWAWVLQDALGIAFCL 330

Query: 174 QGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP--------------------------- 206
             ++ + L +FK   +LL  LFVYD+F+VF TP                           
Sbjct: 331 YMLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGESIMVEVAAGPSDSATHEKLP 390

Query: 207 VMLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYT 260
           ++L  P  +++      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y 
Sbjct: 391 MVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYG 450

Query: 261 VGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 301
           +GL++T + +   Q  QPALLY+VP  +    +  +W  E+
Sbjct: 451 IGLLVTFVALALMQMGQPALLYLVPCTLITSFSVALWRKEL 491

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
225436624	341	PREDICTED: minor histocompatibility anti	0.996	0.964	0.877	1e-166
224105961	341	predicted protein [Populus trichocarpa]	0.996	0.964	0.874	1e-164
255572209	341	Minor histocompatibility antigen H13, pu	0.996	0.964	0.859	1e-162
224055311	341	predicted protein [Populus trichocarpa]	0.996	0.964	0.868	1e-161
359807234	341	uncharacterized protein LOC100807073 [Gl	0.996	0.964	0.868	1e-161
356515573	341	PREDICTED: minor histocompatibility anti	0.996	0.964	0.853	1e-159
356507877	341	PREDICTED: minor histocompatibility anti	0.996	0.964	0.856	1e-159
388519675	341	unknown [Lotus japonicus]	0.996	0.964	0.836	1e-156
449437032	341	PREDICTED: signal peptide peptidase-like	0.993	0.961	0.844	1e-156
388492738	341	unknown [Lotus japonicus]	0.996	0.964	0.836	1e-156

>gi|225436624|ref|XP_002280005.1| PREDICTED: minor histocompatibility antigen H13 [Vitis vinifera] gi|296083844|emb|CBI24232.3| unnamed protein product [Vitis vinifera]

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 300/342 (87%), Positives = 319/342 (93%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER+ANL LAGLTLAPL++KVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERLANLGLAGLTLAPLVMKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSAT+LPA++R+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATLLPAIRRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D IIWHFPYFRSLEIEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DPIIWHFPYFRSLEIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGKG++YFKSAFLGYT GLV+TI+VMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRGKGNQYFKSAFLGYTTGLVVTIVVMNWFQAAQPALLYIVPAVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GF+AAHCIWNGEVK LLEFDESKTA+  S++ GD K+SKKVE
Sbjct: 301 GFMAAHCIWNGEVKPLLEFDESKTAS-SSKDDGDEKSSKKVE 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105961|ref|XP_002313995.1| predicted protein [Populus trichocarpa] gi|118487274|gb|ABK95465.1| unknown [Populus trichocarpa] gi|222850403|gb|EEE87950.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 299/342 (87%), Positives = 313/342 (91%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCER+ANLALAGLTLAPL VKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERVANLALAGLTLAPLFVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIVALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I WHFPYF SLEIEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVISWHFPYFHSLEIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT DTARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADTARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK S+YFKSAFLGYT G+VLTIIVMNWFQAAQPALLYIVPA I
Sbjct: 241 VIPGIFVALALRFDVSRGKESQYFKSAFLGYTAGVVLTIIVMNWFQAAQPALLYIVPAAI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAH +WNGEVK L+EFDESKTAA  SQE  +  +SKKVE
Sbjct: 301 GFLAAHVVWNGEVKPLMEFDESKTAA-SSQEDSETSSSKKVE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572209|ref|XP_002527044.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223533606|gb|EEF35344.1| Minor histocompatibility antigen H13, putative [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 294/342 (85%), Positives = 315/342 (92%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN+ALAGLTLAPL+VKVDPNLNVILTACL VYVGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNGERLANIALAGLTLAPLVVKVDPNLNVILTACLAVYVGCYRSVKPTPPAETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I WHFPYFRSLEIEFTRSQ++A+IPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVITWHFPYFRSLEIEFTRSQVVASIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK S+YFKSAFLGYT G+VLTI+VMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRGKDSQYFKSAFLGYTAGVVLTIVVMNWFQAAQPALLYIVPAVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAH IWNGEVK L+EFDESKTAA  +QES ++ ++KKVE
Sbjct: 301 GFLAAHVIWNGEVKPLMEFDESKTAA-STQESSESNSAKKVE 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055311|ref|XP_002298474.1| predicted protein [Populus trichocarpa] gi|222845732|gb|EEE83279.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/342 (86%), Positives = 310/342 (90%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKNCERIAN ALAGLTLAPL VKVDPNLNVILTACL VYVGCYRSVKPTPPSETMSNEHA
Sbjct: 1   MKNCERIANFALAGLTLAPLFVKVDPNLNVILTACLAVYVGCYRSVKPTPPSETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIVALSATLLPAIKRYLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I W+FPYFRSL+IEFTRSQI+AAIPGTFFCAWYASQKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVISWNFPYFRSLDIEFTRSQIVAAIPGTFFCAWYASQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK S+YFKSAFLGY  GLVLTIIVMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDVSRGKDSQYFKSAFLGYAAGLVLTIIVMNWFQAAQPALLYIVPAVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAH +WNGEVK L+EFDESKT AV SQE     +SKKVE
Sbjct: 301 GFLAAHVLWNGEVKPLMEFDESKT-AVSSQEDSGTSSSKKVE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807234|ref|NP_001241109.1| uncharacterized protein LOC100807073 [Glycine max] gi|255636576|gb|ACU18626.1| unknown [Glycine max]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/342 (86%), Positives = 314/342 (91%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLA+AGLTLAPL+VKVD N+NVILTACLTVYVGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLAVAGLTLAPLIVKVDSNVNVILTACLTVYVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLT YFF+LGI+ALSAT+L +VKRFLP HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTGYFFLLGIVALSATLLSSVKRFLPKHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLEIEFT+SQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DPIVWRFPYFRSLEIEFTKSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK  +YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPSVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAHCIWNG+VKQLLEFDESKTA   SQE GDAK+SKKVE
Sbjct: 301 GFLAAHCIWNGDVKQLLEFDESKTAK-SSQEEGDAKSSKKVE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515573|ref|XP_003526473.1| PREDICTED: minor histocompatibility antigen H13-like [Glycine max]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/342 (85%), Positives = 313/342 (91%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLALAGLTLAPL+VKVDPNLNVILTACLTV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLALAGLTLAPLVVKVDPNLNVILTACLTVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP +KRFLP HWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D+I+WHFPYFRSLEIEFT+SQ++A IPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DVIVWHFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK  +YFKSAF+GYTVGLVLTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAHC+WNG+VKQLLEFDESKTA    QES D K+SKKVE
Sbjct: 301 GFLAAHCLWNGDVKQLLEFDESKTAN-SPQESDDDKSSKKVE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507877|ref|XP_003522689.1| PREDICTED: minor histocompatibility antigen H13-like [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/342 (85%), Positives = 311/342 (90%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIANLALAGLTLAPL+VKVDPNLNVILTA LTV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERIANLALAGLTLAPLVVKVDPNLNVILTASLTVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP +KRFLP HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           DLI+W FPYFRSLEIEFT+SQ++A IPGTFFCAWYA QKHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DLIVWRFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALQKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D+ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK  +YFKSAF+GYTVGLVLTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAHC+WNG+VKQLLEFDESKTA    QES D K+SKKVE
Sbjct: 301 GFLAAHCLWNGDVKQLLEFDESKTAN-SPQESADDKSSKKVE 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519675|gb|AFK47899.1| unknown [Lotus japonicus]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/342 (83%), Positives = 307/342 (89%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN AL GLTLAPL+VKVDPNLNVILTAC+TV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERLANFALLGLTLAPLVVKVDPNLNVILTACITVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP++KRFLPNHWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTSYFFVLGIVALSATLLPSIKRFLPNHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLE+EFTRSQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DNIVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D  RPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK  +YFKSAFLGY VG++LTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQPALLYIVPSVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAHC+WNGEVKQLLEFDESKTA    QE  DAK +KK E
Sbjct: 301 GFLAAHCVWNGEVKQLLEFDESKTAN-SPQEEVDAKVTKKDE 341

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437032|ref|XP_004136296.1| PREDICTED: signal peptide peptidase-like [Cucumis sativus]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/340 (84%), Positives = 303/340 (89%), Gaps = 12/340 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ERIAN ALAGLTLAPL++KVDPN+NV+LTACLTVYVGCYRSVKPTPPSETMS+EHA
Sbjct: 1   MKNAERIANFALAGLTLAPLVMKVDPNVNVVLTACLTVYVGCYRSVKPTPPSETMSSEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGI+ALSAT+LPA+KR+LP+HWNE
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGILALSATLLPAIKRYLPDHWNE 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I W FPYFRSLEIEFTRSQ++AAIPGTFFCAWYA +KHWLANN LGLAFCIQGIEMLS
Sbjct: 121 DAISWRFPYFRSLEIEFTRSQVVAAIPGTFFCAWYALKKHWLANNILGLAFCIQGIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAARPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFD SRGK  +YFKSAFLGY+VGLVLTIIVMNWFQAAQPALLYIVPAVI
Sbjct: 241 VIPGIFVALALRFDASRGKDGQYFKSAFLGYSVGLVLTIIVMNWFQAAQPALLYIVPAVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKK 328
           GFLAAH IWNG+VK LLEFDESKT         D K SKK
Sbjct: 301 GFLAAHVIWNGDVKPLLEFDESKTGIASEDGGEDDKGSKK 340

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492738|gb|AFK34435.1| unknown [Lotus japonicus]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/342 (83%), Positives = 307/342 (89%), Gaps = 13/342 (3%)

Query: 1   MKNCERIANLALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
           MKN ER+AN AL GLTLAPL+VKVDPNLNVILTAC+TV+VGCYRSVKPTPP+ETMSNEHA
Sbjct: 1   MKNTERLANFALLGLTLAPLVVKVDPNLNVILTACITVFVGCYRSVKPTPPTETMSNEHA 60

Query: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
           MRFPFVGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGI+ALSAT+LP++KRFLPNHWN+
Sbjct: 61  MRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPSIKRFLPNHWND 120

Query: 121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
           D I+W FPYFRSLE+EFTRSQI+AAIPGTFFCAWYA +KHWLANN LGLAFCIQ IEMLS
Sbjct: 121 DNIVWRFPYFRSLEVEFTRSQIVAAIPGTFFCAWYALRKHWLANNILGLAFCIQEIEMLS 180

Query: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
           LGSFKTGAILLAGLFVYDIFWVFFTPVM            LLFPT D  RPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADAVRPFSMLGLGDI 240

Query: 229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
           VIPGIFVALALRFDVSRGK  +YFKSAFLGY VG++LTI+VMNWFQAAQPALLYIVP+VI
Sbjct: 241 VIPGIFVALALRFDVSRGKQPQYFKSAFLGYAVGVILTIVVMNWFQAAQPALLYIVPSVI 300

Query: 289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKVE 330
           GFLAAHC+WNGEVKQLLEFDESKTA   SQE  DAK +KK E
Sbjct: 301 GFLAAHCVWNGEVKQLLEFDESKTAN-SSQEEVDAKVTKKDE 341

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2056936	344	SPP "signal peptide peptidase"	0.987	0.947	0.706	4.6e-128
UNIPROTKB|Q6ZGL9	343	SPP1 "Signal peptide peptidase	1.0	0.962	0.688	2.7e-123
UNIPROTKB|B9FJ61	343	SPP2 "Signal peptide peptidase	1.0	0.962	0.682	3.1e-122
UNIPROTKB|E2RB97	378	HM13 "Uncharacterized protein"	0.618	0.539	0.341	6.9e-55
MGI|MGI:95886	378	H13 "histocompatibility 13" [M	0.618	0.539	0.345	2.3e-54
UNIPROTKB|Q8TCT9	377	HM13 "Minor histocompatibility	0.618	0.541	0.336	2.3e-54
UNIPROTKB|F1S7H6	358	HM13 "Uncharacterized protein"	0.618	0.569	0.336	1.1e-52
GENEDB_PFALCIPARUM|PF14_0543	412	mSPP "signal peptide peptidase	0.645	0.516	0.338	2.7e-36
UNIPROTKB|Q8IKQ9	412	SPP "Signal peptide peptidase"	0.645	0.516	0.338	2.7e-36
RGD|1308946	347	Hm13 "histocompatibility 13" [	0.324	0.308	0.495	5.6e-34

TAIR|locus:2056936 SPP "signal peptide peptidase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
 Identities = 241/341 (70%), Positives = 273/341 (80%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MKNCER               V+V+PNLNVILTAC+TVYVGC+RSVK TPP+ETMS EHA
Sbjct:     1 MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVNAVLT YFFVLGI+ALSAT+LPA++RFLPN WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             +LI+W FPYF+SLE+EFT+SQ++A IPGTFFCAWYA +KHWLANN LGL+FCIQGIEMLS
Sbjct:   121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
             LGSFKTGAILLAGLF YDIFWVFFTPVM            LLFPT D  RP+SMLGLGDI
Sbjct:   181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240

Query:   229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
             VIPGIFVALALRFDVSR +  +YF SAF+GY VG++LTI+VMNWFQAAQPALLYIVPAVI
Sbjct:   241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVI 300

Query:   289 GFLAAHCIWNGEVKQLLEFDESKTAAVVSQESGDAKTSKKV 329
             GFLA+HCIWNG++K LL FDESKT    + ES   KTS++V
Sbjct:   301 GFLASHCIWNGDIKPLLAFDESKTEEATTDES---KTSEEV 338

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009846 "pollen germination" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|Q6ZGL9 SPP1 "Signal peptide peptidase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
 Identities = 236/343 (68%), Positives = 265/343 (77%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MK  ER               VKV+PN+NVILTACL VYVGCYRSVKPTPPSETMS EHA
Sbjct:     1 MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVNAVLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             + I+W  P+F SL +EFT+SQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct:   121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
             LGSFKTGAILLAGLF YDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct:   181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query:   229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
             VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct:   241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query:   289 GFLAAHCIWNGEVKQLLEFDESKTAAVVS-QESGDAKTSKKVE 330
             GF+A HC+WNGEVK LLE++ESK     + +E  D+K +KK E
Sbjct:   301 GFVAVHCLWNGEVKPLLEYNESKAEEEDAVEEDTDSKQNKKEE 343

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|B9FJ61 SPP2 "Signal peptide peptidase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 234/343 (68%), Positives = 262/343 (76%)

Query:     1 MKNCERIXXXXXXXXXXXXXXVKVDPNLNVILTACLTVYVGCYRSVKPTPPSETMSNEHA 60
             MK  ER               VKV+PN NVILTACL VYVGCYRSVKPTPP+ETMS EHA
Sbjct:     1 MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHA 60

Query:    61 MRFPFVGSAMXXXXXXXXXXXXXDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNE 120
             MRFP VGSAM             DLVN VLT YFF+LGI AL AT+LP++KRFLP  WN+
Sbjct:    61 MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120

Query:   121 DLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLS 180
             + I+W  P F SL +EFTRSQ++A+IPG FFC WYA++KHWLANN LG++FCIQGIEMLS
Sbjct:   121 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180

Query:   181 LGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDTARPFSMLGLGDI 228
             LGSFKTGAILL+GLF YDIFWVFFTPVM            LLFPT D ARPFSMLGLGDI
Sbjct:   181 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240

Query:   229 VIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 288
             VIPGIFVALALRFDVSRG  +RYF SAFLGYTVGL +TIIVMNWFQAAQPALLYIVP VI
Sbjct:   241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300

Query:   289 GFLAAHCIWNGEVKQLLEFDESKTAAVVS-QESGDAKTSKKVE 330
             GF+A HC+WNGEVK LLE++ESK     + +E  D+K +KK E
Sbjct:   301 GFVAVHCLWNGEVKPLLEYNESKAEEEEACEEDTDSKQNKKKE 343

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2RB97 HM13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 74/217 (34%), Positives = 111/217 (51%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDAKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGI 233
             YD+FWVF T VM+    +    P  ++   D++  G+
Sbjct:   218 YDVFWVFGTNVMVTV-AKSFEAPIKLVFPQDLLEKGL 253

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

MGI|MGI:95886 H13 "histocompatibility 13" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 75/217 (34%), Positives = 111/217 (51%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGI 233
             YDIFWVF T VM+    +    P  ++   D++  G+
Sbjct:   218 YDIFWVFGTNVMVTV-AKSFEAPIKLVFPQDLLEKGL 253

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

UNIPROTKB|Q8TCT9 HM13 "Minor histocompatibility antigen H13" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 73/217 (33%), Positives = 111/217 (51%)

Query:    29 NVILTACLTVYVGCYRSVK------PTPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+       +   ET+++  A RFP + S              
Sbjct:    38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFS 97

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHW-NED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P  + N    L+          EI   E
Sbjct:    98 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYE 157

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   158 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 217

Query:   197 YDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGI 233
             YD+FWVF T VM+    +    P  ++   D++  G+
Sbjct:   218 YDVFWVFGTNVMVTV-AKSFEAPIKLVFPQDLLEKGL 253

GO:0005886 "plasma membrane" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IMP

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=IMP

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IMP

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB|F1S7H6 HM13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 73/217 (33%), Positives = 109/217 (50%)

Query:    29 NVILTACLTVYVGCYRSVKPTPPSETMS-NEHAM-----RFPFVGSAMXXXXXXXXXXXX 82
             +++L A L ++ G  RSV+           EH +     +FPF+ S +            
Sbjct:    19 SLLLMALLPIFFGALRSVRCARGKRRHRLPEHLVTAFQKKFPFLLSCLMIYIYSCYQIFS 78

Query:    83 XDLVNAVLTCYFFVLGIIALSATILPAVKRFLP-NHWNED--LIIWHFPYFRSLEI---E 136
              + +N +L+ YFFVLGI+ALS TI P + +F P N  N    L+          EI   E
Sbjct:    79 QEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGESKEEIINYE 138

Query:   137 FTRSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFV 196
             F    ++     +    WY  +KHW+ANN  GLAF + G+E+L L +  TG ILL GLF+
Sbjct:   139 FDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFI 198

Query:   197 YDIFWVFFTPVMLLFPTRDTARPFSMLGLGDIVIPGI 233
             YD+FWVF T VM+    +    P  ++   D++  G+
Sbjct:   199 YDVFWVFGTNVMVTV-AKSFEAPIKLVFPQDLLEKGL 234

GO:0016021 "integral to membrane" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0543 mSPP "signal peptide peptidase, mSPP" [Plasmodium falciparum (taxid:5833)]

 Score = 295 (108.9 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 80/236 (33%), Positives = 117/236 (49%)

Query:    30 VILTACLTVYVGCYRSVKP------TPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXXX 83
             + L   +T+Y+G + S+K       T  S+ ++   AM FP +GSA              
Sbjct:    49 MFLYTFITIYIGSHDSLKQLEIDDKTKKSDNITAYDAMMFPVIGSAALLTLYFAYKFLDP 108

Query:    84 DLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHF--PYFRSLE-IEFT-- 138
               VN +LT Y  + G+ +L       ++   PN + +D  +  F  P F   E I F   
Sbjct:   109 FYVNLLLTLYLTLAGVFSLQGVFTTILEPVFPNFFKKDEYVKTFKLPNFIYKEPIVFNTN 168

Query:   139 RSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD 198
             + +I+  I        +   K ++ +N L ++FC Q I ++ L +F  G +LL+GLFVYD
Sbjct:   169 KGEIVCLILSFAIGLRWIFYKDFITHNVLAVSFCFQAISLVILSNFLIGFLLLSGLFVYD 228

Query:   199 IFWVF-----------F-TPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFD 242
             IFWVF           F  PV LLFP       +SMLGLGDI+IPGI ++L LRFD
Sbjct:   229 IFWVFGNDVMVTVAKSFEAPVKLLFPVSSDPVHYSMLGLGDIIIPGILMSLCLRFD 284

GO:0008150 "biological_process" evidence=ND

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IKQ9 SPP "Signal peptide peptidase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 295 (108.9 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 80/236 (33%), Positives = 117/236 (49%)

Query:    30 VILTACLTVYVGCYRSVKP------TPPSETMSNEHAMRFPFVGSAMXXXXXXXXXXXXX 83
             + L   +T+Y+G + S+K       T  S+ ++   AM FP +GSA              
Sbjct:    49 MFLYTFITIYIGSHDSLKQLEIDDKTKKSDNITAYDAMMFPVIGSAALLTLYFAYKFLDP 108

Query:    84 DLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHF--PYFRSLE-IEFT-- 138
               VN +LT Y  + G+ +L       ++   PN + +D  +  F  P F   E I F   
Sbjct:   109 FYVNLLLTLYLTLAGVFSLQGVFTTILEPVFPNFFKKDEYVKTFKLPNFIYKEPIVFNTN 168

Query:   139 RSQIIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD 198
             + +I+  I        +   K ++ +N L ++FC Q I ++ L +F  G +LL+GLFVYD
Sbjct:   169 KGEIVCLILSFAIGLRWIFYKDFITHNVLAVSFCFQAISLVILSNFLIGFLLLSGLFVYD 228

Query:   199 IFWVF-----------F-TPVMLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFD 242
             IFWVF           F  PV LLFP       +SMLGLGDI+IPGI ++L LRFD
Sbjct:   229 IFWVFGNDVMVTVAKSFEAPVKLLFPVSSDPVHYSMLGLGDIIIPGILMSLCLRFD 284

GO:0008150 "biological_process" evidence=ND

GO:0020011 "apicoplast" evidence=RCA

RGD|1308946 Hm13 "histocompatibility 13" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 57/115 (49%), Positives = 75/115 (65%)

Query:   203 FFTPVMLLFPTRDT------ARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSA 255
             F  P+ L+FP +D       A  F+MLGLGDIVIPGIF+AL LRFD+S  K +  YF ++
Sbjct:   194 FEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTS 252

Query:   256 FLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDES 310
             F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ S
Sbjct:   253 FAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALVKGEVAEMFSYESS 307

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=ISO

GO:0042500 "aspartic endopeptidase activity, intramembrane cleaving" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=ISO

GO:0071556 "integral to lumenal side of endoplasmic reticulum membrane" evidence=ISO

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81062	SIP_ARATH	3, ., 4, ., 2, 3, ., -	0.7807	0.9909	0.9505	yes	no
B9FJ61	SIP2_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7551	1.0	0.9620	yes	no
Q6ZGL9	SIP1_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7609	1.0	0.9620	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
pfam04258	291	pfam04258, Peptidase_A22B, Signal peptide peptidas	6e-83
smart00730	249	smart00730, PSN, Presenilin, signal peptide peptid	6e-51

>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase

 Score =  252 bits (646), Expect = 6e-83
 Identities = 115/291 (39%), Positives = 157/291 (53%), Gaps = 33/291 (11%)

Query: 47  KPTPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVN--AVLTCYFFVLGIIALSA 104
           K    + T+ + HA+ FP   S  LL L+L FK LSK+ +N   VLT YF +LG IAL+ 
Sbjct: 1   KSKEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAF 60

Query: 105 TILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYA--SQKHWL 162
            ILP   R L                      FT S+++A +    F  W+    ++HW+
Sbjct: 61  LILPPCIRRLSFMGAYRFPKKKSKLE-LKNGRFTYSELVALLLCIVFAVWWYVLRKEHWI 119

Query: 163 ANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTP------VML------- 209
             + LG+A CI  I++L L + K G ILL+GLF YDIFWVF +P      VM+       
Sbjct: 120 LQDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPF 179

Query: 210 --------------LFPTRDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKS 254
                         L        PFSMLGLGDIV+PG+ +A  LRFD+S+ K SR YF S
Sbjct: 180 DAAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSRTYFIS 239

Query: 255 AFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLL 305
             + Y +GL++T + +N F+AAQPALLY+VP  +G L    +W GE+K+L 
Sbjct: 240 TMIAYGLGLLITFVALNLFKAAQPALLYLVPCTLGTLLLVALWRGELKKLW 290

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family

 Score =  168 bits (429), Expect = 6e-51
 Identities = 83/275 (30%), Positives = 122/275 (44%), Gaps = 55/275 (20%)

Query: 51  PSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAV 110
               +++  A+ FP V + +L+ L+  FK+L       VL  YF  LG++ L + + P  
Sbjct: 1   EYSLLNSLVAIVFPIVATFVLVLLYKFFKYL-----VIVLVIYFSSLGVLFLYSLLYPLE 55

Query: 111 KRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAIPGTFFCAWYASQK-HWLANNTLGL 169
                                        + +I  +       W   +K  W+  + +G+
Sbjct: 56  VFR----------------------VDYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGI 93

Query: 170 AFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFT---------------------PVM 208
           + C+  + +L L S  T  ILL  LF+YDIF VF T                     P +
Sbjct: 94  SLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPLRVMVEVATGRDEPIKVFPAL 153

Query: 209 LLFPTR------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVG 262
           L  P        D    FSMLGLGDIV PGI VA A RFDVS    S YF + F+ Y +G
Sbjct: 154 LYVPRLVVSFEDDEEERFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGIG 213

Query: 263 LVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIW 297
           L+LT++++  F+ AQPAL Y+VP  + F     + 
Sbjct: 214 LILTLVLLALFKKAQPALPYLVPFTLVFYLLTALL 248

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG2443	362	consensus Uncharacterized conserved protein [Funct	100.0
KOG2442	541	consensus Uncharacterized conserved protein, conta	100.0
PF04258	298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730	249	PSN Presenilin, signal peptide peptidase, family.	100.0
PF06550	283	DUF1119: Protein of unknown function (DUF1119); In	99.02
COG3389	277	Uncharacterized protein conserved in archaea [Func	97.86
PF01080	403	Presenilin: Presenilin Alzheimer disease; InterPro	94.32
KOG2736	406	consensus Presenilin [Signal transduction mechanis	92.93

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.4e-76  Score=563.64  Aligned_cols=316  Identities=46%  Similarity=0.773  Sum_probs=273.8

Q ss_pred             HHHHHHhhcCCccccCcchhhHHHHHHHHHHhcccccCC------C-CCCCCCCccccch-hhhHHHHHHHHHHHHHhhc
Q 020166           10 LALAGLTLAPLLVKVDPNLNVILTACLTVYVGCYRSVKP------T-PPSETMSNEHAMR-FPFVGSAMLLSLFLLFKFL   81 (330)
Q Consensus        10 ~~l~~~~~~~~~~~~~~~~~ii~~Av~~V~iGs~~sl~~------~-~~~e~~s~~~A~~-fPv~aS~~L~~LY~l~k~~   81 (330)
                      .+....+.+++.-..+.++.++++|+++|++||.||++.      + +..|+++.+||.. ||++|||+|++||+++|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~~d~~~~~es~t~~~a~~~fPi~~s~tLl~lyl~fk~l   89 (362)
T KOG2443|consen   10 PAAAGTHWTTSELLASAYVSLILIALLLIVIGSFRSLNYIKENEDKKDKSESITKRDAGKMFPIIGSCTLLLLYLLFKPL   89 (362)
T ss_pred             ccccCCcccchhhhcccchHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhcccCCcccchHHHHHHHHHHHH
Confidence            334446677777778889999999999999999999962      2 2366899999998 9999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCCCCCCceeeeeccc---cceeeeeehhhHHhhhhHHHHHHH
Q 020166           82 SKDLVNAVLTCYFFVLGIIALSATILPAVK----RFLPNHWNEDLIIWHFPYF---RSLEIEFTRSQIIAAIPGTFFCAW  154 (330)
Q Consensus        82 ~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~----~~~p~~~~~~~~~~~~p~~---~~~~~~~~~~~l~~~~~~~~~~~~  154 (330)
                      .++++| +++.||++.|+.++.+.+.|++.    .+.|..+.+- ...+-|+.   ...+.++|..|+++...|..+++|
T Consensus        90 s~~~~~-ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~-~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~~i~v~  167 (362)
T KOG2443|consen   90 SKELIN-LLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHL-LFPRGPGEKKEFICNGKFTRAQIVALVLSSMIVVW  167 (362)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhhe-eeeccCCcccceeecccccHHHHHHHHHHHHHHHH
Confidence            999998 67899999999999999999988    3445443321 10111222   124789999999999999999999


Q ss_pred             hhccchhhhhhHHHHHHHHHhhhhcccCchhHHHHHHHHHHHHHhhhhhccceE------------EEecCCCC-----C
Q 020166          155 YASQKHWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVM------------LLFPTRDT-----A  217 (330)
Q Consensus       155 ~~~~~~W~l~nilgi~~~~~~i~~l~l~sfk~~~ilL~~lf~YDIf~VF~Tpvm------------l~~P~~~~-----~  217 (330)
                      |+.++||++||++|+++|+++|+.+|++|+|+|++||.|||+|||||||+|+||            +++|+...     .
T Consensus       168 ~ll~~HWl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFgTnVMVtVAt~~D~PikL~fP~~l~~~~~~a  247 (362)
T KOG2443|consen  168 YLLTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFGTNVMVTVATSLDAPIKLVFPQKLLFPGLTA  247 (362)
T ss_pred             HHhhhHHHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEecCceEEEeecccCCceEEecchhhccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999            88998421     4


Q ss_pred             CCcccccCCCcchhhHHHHHHHhhhhccCCC---cchhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHHHHH
Q 020166          218 RPFSMLGLGDIVIPGIFVALALRFDVSRGKG---SRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH  294 (330)
Q Consensus       218 ~~~s~LGlGDIviPGl~ia~~lRfD~~~~~~---~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~~~~  294 (330)
                      .+||||||||||+||+|+|+++|||.+++..   ++||+.+++||++|+..|+++|+++|++||||||+||+|+++.+++
T Consensus       248 s~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~t~i~Y~~gL~~ti~~~~~FkaAQPALLYlVP~~l~~~ll~  327 (362)
T KOG2443|consen  248 SNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHNTFIAYFLGLLTTIVVLHIFKAAQPALLYLVPACLGPLLLM  327 (362)
T ss_pred             ccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEEeHHHHHhhhHHHhhhhhhhhccchhhhhhhHHHHhHHHHH
Confidence            5799999999999999999999999986543   7899999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHhhcccccccccccccccccccccc
Q 020166          295 CIWNGEVKQLLEFDESKTAAVVSQESGDAKTSK  327 (330)
Q Consensus       295 A~~rgEl~~~w~~~~~~~~~~~~~~~~~~~~~~  327 (330)
                      |+.|||++++|+|+|+.+||++++.|.++++|+
T Consensus       328 A~~~gdlk~l~s~~~~~~~~~~~~~e~k~~~e~  360 (362)
T KOG2443|consen  328 AYWRGDLKVLWSFDESTKEESAEQDEVKEKKEN  360 (362)
T ss_pred             HHHccchHhhhCccccCCCCcHHHHhhhhcccc
Confidence            999999999999999888777766666555554

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=100.00  E-value=6.1e-65  Score=501.79  Aligned_cols=287  Identities=30%  Similarity=0.492  Sum_probs=237.2

Q ss_pred             HHhhcCCccccCcchhhH-HHHHHHHHHhcccccCCCCC--------------CC------------CCCccccchhhhH
Q 020166           14 GLTLAPLLVKVDPNLNVI-LTACLTVYVGCYRSVKPTPP--------------SE------------TMSNEHAMRFPFV   66 (330)
Q Consensus        14 ~~~~~~~~~~~~~~~~ii-~~Av~~V~iGs~~sl~~~~~--------------~e------------~~s~~~A~~fPv~   66 (330)
                      +.+|+|+.|.+|+++++| ++|++||..|||||..++++              +|            .++.-.|..|-+.
T Consensus       173 ~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~  252 (541)
T KOG2442|consen  173 LALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVT  252 (541)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhh
Confidence            468999999999999999 99999999999999732110              11            1333345566677


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeeeeccccceeeeeehhhHHhhh
Q 020166           67 GSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFRSLEIEFTRSQIIAAI  146 (330)
Q Consensus        67 aS~~L~~LY~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~  146 (330)
                      +|.+|+.+|+++++    +++. ++++|++.|..++++|+.+.++|..-+..+.   +-.-|..+..+    ...++...
T Consensus       253 ~c~~LvLlyfF~~~----~V~v-~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~---~~~~~~l~~~~----~~~l~l~~  320 (541)
T KOG2442|consen  253 ACGFLVLLYFFYSY----LVYV-LIIIFCIGGAQGLYNCLAALVHRLPYGAARF---PTLAPRLGNMS----YRLLFLSI  320 (541)
T ss_pred             hHHHHHHHHHHHHH----HHHH-HhhheeecccchHHHHHHHHHhhhhhhcccc---cccccccCChh----HHHHHHHH
Confidence            88888888877765    4555 4688999999999999999999865443221   11112223222    23455555


Q ss_pred             hHHHHH-HHhhccc---hhhhhhHHHHHHHHHhhhhcccCchhHHHHHHHHHHHHHhhhhhccceE--------------
Q 020166          147 PGTFFC-AWYASQK---HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVM--------------  208 (330)
Q Consensus       147 ~~~~~~-~~~~~~~---~W~l~nilgi~~~~~~i~~l~l~sfk~~~ilL~~lf~YDIf~VF~Tpvm--------------  208 (330)
                      +|++++ .|..+|+   +|++||++|||+|++.+|.+|+||+|+|++||..+|+|||||||+||+|              
T Consensus       321 ~Cia~aV~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G  400 (541)
T KOG2442|consen  321 LCIAVAVVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARG  400 (541)
T ss_pred             hhhheeEEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecC
Confidence            666654 5777775   7999999999999999999999999999999999999999999999965              


Q ss_pred             -----------EEecC-C-----CCCCCcccccCCCcchhhHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHHHHHH
Q 020166          209 -----------LLFPT-R-----DTARPFSMLGLGDIVIPGIFVALALRFDVSRGK-GSRYFKSAFLGYTVGLVLTIIVM  270 (330)
Q Consensus       209 -----------l~~P~-~-----~~~~~~s~LGlGDIviPGl~ia~~lRfD~~~~~-~~~YF~~s~igY~~GL~~t~~~~  270 (330)
                                 +++|| +     ++.++|||||+|||++||++||+|+|||.+.++ +..||.++++||.+||++|++++
T Consensus       401 ~~s~~EkiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYfv~~tvaYgiGLlvTfvaL  480 (541)
T KOG2442|consen  401 PSSTEEKIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYFVWSTVAYGIGLLVTFVAL  480 (541)
T ss_pred             CCCCCCCcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEEehhHHHHHHHHHHHHHHH
Confidence                       78898 3     788999999999999999999999999998776 88999999999999999999999


Q ss_pred             hhhCCCccchhhhhhHHHHHHHHHHHHhhHHHHhhccccccc
Q 020166          271 NWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESKT  312 (330)
Q Consensus       271 ~~~~~~QPALLYLVP~~l~~~~~~A~~rgEl~~~w~~~~~~~  312 (330)
                      .++|.|||||||||||+|++....|++|||++++|++...+.
T Consensus       481 ~LM~~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~  522 (541)
T KOG2442|consen  481 VLMKGGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQK  522 (541)
T ss_pred             HHhcCCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999999999988663

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=7.9e-65  Score=486.45  Aligned_cols=258  Identities=45%  Similarity=0.818  Sum_probs=0.0

Q ss_pred             CCCCCCCCccccchhhhHHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCC----CCCCCc
Q 020166           49 TPPSETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNA--VLTCYFFVLGIIALSATILPAVKRFLPN----HWNEDL  122 (330)
Q Consensus        49 ~~~~e~~s~~~A~~fPv~aS~~L~~LY~l~k~~~~~~v~~--ll~~yf~~~g~~~l~~~l~~~~~~~~p~----~~~~~~  122 (330)
                      +++.|++|.+||+.||++||++|++||+++|+++++++|.  +++.||+++|+.++...+.+.+.+..+.    ....++
T Consensus         2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~   81 (298)
T PF04258_consen    2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKK   81 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence            3568899999999999999999999999999999999986  8999999999999988888877764331    111111


Q ss_pred             eeeeeccc--cceeeeeehhhHHhhhhHHHHHH-Hhhccc-hhhhhhHHHHHHHHHhhhhcccCchhHHHHHHHHHHHHH
Q 020166          123 IIWHFPYF--RSLEIEFTRSQIIAAIPGTFFCA-WYASQK-HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYD  198 (330)
Q Consensus       123 ~~~~~p~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~-~W~l~nilgi~~~~~~i~~l~l~sfk~~~ilL~~lf~YD  198 (330)
                      .+...+..  +..+.+++..++++..+++.+++ |++.++ ||++||++|+|+|+++++.+|+||+|+++++|+++|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YD  161 (298)
T PF04258_consen   82 WKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNEHWILQNILGICFCINIISLIRLPSFKTATILLIGLFLYD  161 (298)
T ss_dssp             ---------------------------------S----------------------------------------------
T ss_pred             EEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccchHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHHHH
Confidence            11111111  23456778888999888888865 566677 999999999999999999999999999999999999999


Q ss_pred             hhhhh------ccceE-----------------EEecCC-----CCCCCcccccCCCcchhhHHHHHHHhhhhcc-CCCc
Q 020166          199 IFWVF------FTPVM-----------------LLFPTR-----DTARPFSMLGLGDIVIPGIFVALALRFDVSR-GKGS  249 (330)
Q Consensus       199 If~VF------~Tpvm-----------------l~~P~~-----~~~~~~s~LGlGDIviPGl~ia~~lRfD~~~-~~~~  249 (330)
                      |||||      ++++|                 +++|+.     .+++++||||+||||+||+++++|+|||.++ ++++
T Consensus       162 if~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~  241 (298)
T PF04258_consen  162 IFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKSRK  241 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccccc
Confidence            99999      76777                 677875     4688999999999999999999999999998 3467


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHHHHHHHHhhHHHHhhc
Q 020166          250 RYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLE  306 (330)
Q Consensus       250 ~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~~~~A~~rgEl~~~w~  306 (330)
                      +||.++++||++||++|+++++++|+|||||||+||+|+++++++|++|||++++||
T Consensus       242 ~Yf~~~~~~Y~~Gl~~t~~~~~~~~~~QPALlylvP~~l~~~~~~a~~r~el~~~w~  298 (298)
T PF04258_consen  242 PYFIASLIGYALGLLLTFVALHLFKHGQPALLYLVPCTLGSVLLVAWIRGELKDFWN  298 (298)
T ss_dssp             ---------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCCCeehHHHHHHHHHHHHHHHHhhHHHHhhC
Confidence            899999999999999999999999999999999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.

>smart00730 PSN Presenilin, signal peptide peptidase, family

Probab=100.00  E-value=3.6e-46  Score=349.74  Aligned_cols=219  Identities=37%  Similarity=0.654  Sum_probs=189.2

Q ss_pred             CCCCCccccchhhhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeeeecccc
Q 020166           52 SETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNAVLTCYFFVLGIIALSATILPAVKRFLPNHWNEDLIIWHFPYFR  131 (330)
Q Consensus        52 ~e~~s~~~A~~fPv~aS~~L~~LY~l~k~~~~~~v~~ll~~yf~~~g~~~l~~~l~~~~~~~~p~~~~~~~~~~~~p~~~  131 (330)
                      .|.+++.+++.||+++|++|+++|...|+     .+..+.+||+..|+.++..++.+......                 
T Consensus         2 ~~~~n~~~~i~fii~~s~~Ll~Ly~~~~~-----~~i~~~~~f~~~~~~~~~~~~~~~~~~~~-----------------   59 (249)
T smart00730        2 YSLLNSLVAIVFPIVATFVLVLLYKFFKY-----LVIVLVIYFSSLGVLFLYSLLYPLEVFRV-----------------   59 (249)
T ss_pred             cccccHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence            46789999999999999999999998876     26667899999999999999988765420                 


Q ss_pred             ceeeeeehhhHHhhhhH-HHHHHHhhccc-hhhhhhHHHHHHHHHhhhhcccCchhHHHHHHHHHHHHHhhhhhcc----
Q 020166          132 SLEIEFTRSQIIAAIPG-TFFCAWYASQK-HWLANNTLGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFT----  205 (330)
Q Consensus       132 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~-~W~l~nilgi~~~~~~i~~l~l~sfk~~~ilL~~lf~YDIf~VF~T----  205 (330)
                            +.........+ .+.+.|+.++| +|+.||++|+++|+++++.+++||+|+++++|+++++||+||||+|    
T Consensus        60 ------~~~~~~~~~~~~~v~~~~~~~~~~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~~~  133 (249)
T smart00730       60 ------DYPTLLILLLNFAVVGFWCIHRKGAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPGPL  133 (249)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCCCc
Confidence                  01122333333 33457887786 9999999999999999999999999999999999999999999999    


Q ss_pred             ceE-----------EEecC------------CCCCCCcccccCCCcchhhHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 020166          206 PVM-----------LLFPT------------RDTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVG  262 (330)
Q Consensus       206 pvm-----------l~~P~------------~~~~~~~s~LGlGDIviPGl~ia~~lRfD~~~~~~~~YF~~s~igY~~G  262 (330)
                      ++|           +++|.            +++.+++|+||+||||+||+++++|+|||.+++.+++||.+|++||.+|
T Consensus       134 ~vMv~vA~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~~~ay~~G  213 (249)
T smart00730      134 RVMVEVATGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACFVAYGIG  213 (249)
T ss_pred             hHHhhHhccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence            788           14554            2346789999999999999999999999998777889999999999999


Q ss_pred             HHHHHHHHhhhCCCccchhhhhhHHHHHHHHHHHHh
Q 020166          263 LVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWN  298 (330)
Q Consensus       263 L~~t~~~~~~~~~~QPALLYLVP~~l~~~~~~A~~r  298 (330)
                      |+.|+++++.+|+|||||+|+||+++++.+++|+.|
T Consensus       214 L~~t~~~l~~~~~aqPALlylvp~~l~~~~~~~~~r  249 (249)
T smart00730      214 LILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR  249 (249)
T ss_pred             HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999976

Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function

Probab=99.02  E-value=7.9e-08  Score=91.61  Aligned_cols=156  Identities=26%  Similarity=0.340  Sum_probs=108.6

Q ss_pred             HHhhhhHHHHHHHhhccchhhhhhHHHHHHHHHhhhh--cccCchhHHHHHHHHHHHHHhhhhhccc-------------
Q 020166          142 IIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEM--LSLGSFKTGAILLAGLFVYDIFWVFFTP-------------  206 (330)
Q Consensus       142 l~~~~~~~~~~~~~~~~~~W~l~nilgi~~~~~~i~~--l~l~sfk~~~ilL~~lf~YDIf~VF~Tp-------------  206 (330)
                      ..+.+.+..+..+.+....|+..|+.|+..+...-..  +++ +.-.+.+||..+=+||-.=||.|.             
T Consensus        93 ~~a~~~ai~~~~~L~~ypEWYviD~~Gil~~aG~aaiFGISl-~~lpaiiLL~iLAVYDaISVYkTkHMltLAegv~d~k  171 (283)
T PF06550_consen   93 IIALILAIALTALLYKYPEWYVIDIAGILMGAGAAAIFGISL-GILPAIILLAILAVYDAISVYKTKHMLTLAEGVMDLK  171 (283)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhHHHHHHhhhc-cHHHHHHHHHHHHHhhhhheecchHHHHHHHHHhccC
Confidence            4556666666777777889999999999998764333  333 456788999999999999999995             


Q ss_pred             --eEEEecCC-------------C--CCCCcccccCCCcchhhHHHHHHHhhhhccCC-Ccchh-HHHHHHHHHHHHHHH
Q 020166          207 --VMLLFPTR-------------D--TARPFSMLGLGDIVIPGIFVALALRFDVSRGK-GSRYF-KSAFLGYTVGLVLTI  267 (330)
Q Consensus       207 --vml~~P~~-------------~--~~~~~s~LGlGDIviPGl~ia~~lRfD~~~~~-~~~YF-~~s~igY~~GL~~t~  267 (330)
                        +++++|+.             +  ++|.--++|+||.++|.+++.-+..|...... .-.++ ..+++|=.+|+.+=.
T Consensus       172 lPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~~~~~~~~lpalga~~Gtl~gl~vL~  251 (283)
T PF06550_consen  172 LPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSAPILGGLNLPALGAMLGTLAGLAVLL  251 (283)
T ss_pred             CceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence              44888972             0  11233488999999999999988888765321 11122 334444444443322


Q ss_pred             HHHhhhCCCccchhhhhhHHHHHHHHHHHHhh
Q 020166          268 IVMNWFQAAQPALLYIVPAVIGFLAAHCIWNG  299 (330)
Q Consensus       268 ~~~~~~~~~QPALLYLVP~~l~~~~~~A~~rg  299 (330)
                      .. ...+++||.|-||--+.++..++-++..|
T Consensus       252 ~~-v~kgrp~aGLP~LN~GaI~Gflig~l~sg  282 (283)
T PF06550_consen  252 RF-VMKGRPQAGLPFLNGGAIAGFLIGALASG  282 (283)
T ss_pred             HH-HHcCCCCCCCCccchhHHHHHHHHHHHcC
Confidence            21 23578999999998888888777776544

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.86  E-value=6.2e-05  Score=70.28  Aligned_cols=146  Identities=24%  Similarity=0.303  Sum_probs=101.7

Q ss_pred             hhhhHHHHHHHhhccchhhhhhHHHHHHHHHhhhh--cccCchhHHHHHHHHHHHHHhhhhhccceE-------------
Q 020166          144 AAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEM--LSLGSFKTGAILLAGLFVYDIFWVFFTPVM-------------  208 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~W~l~nilgi~~~~~~i~~--l~l~sfk~~~ilL~~lf~YDIf~VF~Tpvm-------------  208 (330)
                      +..+++.+....+.++.|+..|..|.+++...-..  +++. ...+..+|..+=+||-.=|+.|.-|             
T Consensus        95 si~~aI~~~~lL~~~peWyVid~ag~~la~Giaai~GIsfg-v~pavvlL~~lavYDaIsVYkT~HMIslA~~v~d~~lP  173 (277)
T COG3389          95 SIGLAIGLVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFG-VLPAVVLLIALAVYDAISVYKTRHMISLAEGVMDLDLP  173 (277)
T ss_pred             HHHHHHHHHHhhhhccceEEeehHHHHHHhhHHHhheeecc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            33344444444456778999999999887765433  3333 3567889999999999999999644             


Q ss_pred             --EEecCC------------CCCCCcccccCCCcchhhHHHHHHHhhhhccCCCcchh--HHHHHHHHHHHHHHHHHHhh
Q 020166          209 --LLFPTR------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYF--KSAFLGYTVGLVLTIIVMNW  272 (330)
Q Consensus       209 --l~~P~~------------~~~~~~s~LGlGDIviPGl~ia~~lRfD~~~~~~~~YF--~~s~igY~~GL~~t~~~~~~  272 (330)
                        .++|.+            ..+++-=|.|+||+++|-+++.=+.-|-.+.   .-+|  ..++.|=.+|+..-  -+..
T Consensus       174 mlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~s~---~l~f~~Lpal~GglvGl~vL--~~v~  248 (277)
T COG3389         174 MLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLISP---ILAFIVLPALAGGLVGLAVL--YFVN  248 (277)
T ss_pred             eEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhccCC---chhhhhHHHHhccHHHHHHH--HHHh
Confidence              677851            2344555899999999999988776664432   3334  33577777777655  3444


Q ss_pred             hCCCccchhhhhhHHHHHHHHHH
Q 020166          273 FQAAQPALLYIVPAVIGFLAAHC  295 (330)
Q Consensus       273 ~~~~QPALLYLVP~~l~~~~~~A  295 (330)
                      -+++||-|-|+--..+.+.++-+
T Consensus       249 r~Rp~pGLP~lN~GaIaGflig~  271 (277)
T COG3389         249 RGRPHPGLPFLNTGAIAGFLIGF  271 (277)
T ss_pred             cCCCCCCCceeccchHHHHHHHH
Confidence            57899999999877776665544

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.32  E-value=0.08  Score=53.61  Aligned_cols=63  Identities=30%  Similarity=0.581  Sum_probs=47.0

Q ss_pred             cccCCCcchhhHHHHHHHhh-hhccCCCcchhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHHH
Q 020166          222 MLGLGDIVIPGIFVALALRF-DVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLA  292 (330)
Q Consensus       222 ~LGlGDIviPGl~ia~~lRf-D~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~~  292 (330)
                      -|||||-|+=+++++-+.++ |.      .-..+|++|-.+||++|...+.++|++-|||-  ++..+|.+.
T Consensus       327 klGlGDFiFYs~Lvg~aa~~~~~------~~~~~~~~ail~Gl~~Tl~~l~~~~~alPALP--isi~~g~~~  390 (403)
T PF01080_consen  327 KLGLGDFIFYSVLVGRAAMYGDW------NTVVACFVAILIGLCLTLLLLAIFRKALPALP--ISIALGLIF  390 (403)
T ss_dssp             SS-TTTHHHHHHHHHHHHHH-TT------TTHHHHHHHHHHHHHHHHHHHHHHT-S-SSSS--S----HHHH
T ss_pred             eecchhHHHHHHHHhHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHH
Confidence            58999999999999988876 33      33578999999999999999999999999995  555555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.

>KOG2736 consensus Presenilin [Signal transduction mechanisms]

Probab=92.93  E-value=0.12  Score=51.69  Aligned_cols=66  Identities=27%  Similarity=0.504  Sum_probs=52.9

Q ss_pred             cccCCCcchhhHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHHHHH
Q 020166          222 MLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAH  294 (330)
Q Consensus       222 ~LGlGDIviPGl~ia~~lRfD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~~~~  294 (330)
                      -||+||-|+=-++++-+.-+|-+     .=-++|.+|-.+||++|.....++|++-|||-  .|.++|.+.-.
T Consensus       321 kLGlGDFIFYSvLvGkAa~~~d~-----~TviAC~vaIL~GL~~TL~llsv~~kALPALP--isI~~G~iFYF  386 (406)
T KOG2736|consen  321 KLGLGDFIFYSVLVGKAAAYGDL-----NTVIACFVAILIGLCLTLLLLSVFKKALPALP--ISITFGLIFYF  386 (406)
T ss_pred             eeccCceEEEEeeccchhhcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCc--hHHHHHHHHHH
Confidence            59999999887777766666521     12378999999999999999999999999996  77777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4hyg_A	301	Putative uncharacterized protein; protease, membra	99.88
2kr6_A	176	Presenilin-1; protease, alternative splicing, alzh	96.44

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A

Probab=99.88  E-value=3.6e-22  Score=187.71  Aligned_cols=157  Identities=22%  Similarity=0.269  Sum_probs=121.7

Q ss_pred             HHhhhhHHHHHHHhhccchhhhhhHHHHHHHHHhhhhccc--CchhHHHHHHHHHHHHHhhhhhccceE-----------
Q 020166          142 IIAAIPGTFFCAWYASQKHWLANNTLGLAFCIQGIEMLSL--GSFKTGAILLAGLFVYDIFWVFFTPVM-----------  208 (330)
Q Consensus       142 l~~~~~~~~~~~~~~~~~~W~l~nilgi~~~~~~i~~l~l--~sfk~~~ilL~~lf~YDIf~VF~Tpvm-----------  208 (330)
                      ..+.+.+.+++.+++..++|+.+|+.|+++|.++.....+  ..+ .+.+||+++.+||.+|||+|+.|           
T Consensus       105 ~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdlk  183 (301)
T 4hyg_A          105 AGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLETK  183 (301)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhccC
Confidence            4555667777788888999999999999999988766654  777 99999999999999999999765           


Q ss_pred             ----EEecCC--------------CCCCCcccccCCCcchhhHHHHHHHhhhhccC----CCcchhHHHHHHHHHHHHHH
Q 020166          209 ----LLFPTR--------------DTARPFSMLGLGDIVIPGIFVALALRFDVSRG----KGSRYFKSAFLGYTVGLVLT  266 (330)
Q Consensus       209 ----l~~P~~--------------~~~~~~s~LGlGDIviPGl~ia~~lRfD~~~~----~~~~YF~~s~igY~~GL~~t  266 (330)
                          +++|+.              ..+++..++|+||+|+|+++++-+.|||..+.    -+-+ +..+++||.+|+.++
T Consensus       184 ~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~Gl~vL  262 (301)
T 4hyg_A          184 APIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLVGLAVL  262 (301)
T ss_dssp             ----------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHHHHHHH
Confidence                788872              22467889999999999999999999997543    1234 899999999999999


Q ss_pred             HH-HHhhhCCCccchhhhhhHHHHHHHHHHHHhhHHH
Q 020166          267 II-VMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVK  302 (330)
Q Consensus       267 ~~-~~~~~~~~QPALLYLVP~~l~~~~~~A~~rgEl~  302 (330)
                      +. ++  .+++||.|.||.++++++.++.++.+||+.
T Consensus       263 l~~V~--~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          263 LYFVN--KGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHT--SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHH--cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            76 44  799999999999999999999999999986

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=96.44  E-value=0.0028  Score=55.69  Aligned_cols=66  Identities=29%  Similarity=0.440  Sum_probs=53.4

Q ss_pred             CcccccCCCcchhhHHHHHHH--h-hhhccCCCcchhHHHHHHHHHHHHHHHHHHhhhCCCccchhhhhhHHHHHHH
Q 020166          219 PFSMLGLGDIVIPGIFVALAL--R-FDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLA  292 (330)
Q Consensus       219 ~~s~LGlGDIviPGl~ia~~l--R-fD~~~~~~~~YF~~s~igY~~GL~~t~~~~~~~~~~QPALLYLVP~~l~~~~  292 (330)
                      .---|||||-|+=+++++-+-  + .|.      .=..+|++|..+||++|+..+.+++++-|||-  +|..++.+.
T Consensus        86 ~gikLGLGDFIFYSvLVgkAa~~~~~d~------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALP--iSI~lG~~f  154 (176)
T 2kr6_A           86 RGVKLGLGDFIFYSVLVGKASATASGDW------NTTIACFVAILIGLCLTLLLLAIFKKALPALP--ISITFGLVF  154 (176)
T ss_dssp             SCCSSCTTTHHHHHHHHHHHHHHSCCTT------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSS--SCCCCHHHH
T ss_pred             ccccccccCeeehHHHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc--HHHHHHHHH
Confidence            334699999999999999886  4 244      34688999999999999999999999999995  555555443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00