Citrus Sinensis ID: 020181

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS

cccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHcccEEEccEEEEEEEcccEEEEEEEcccEEEEEccccccccccccEEEEEcccHHHHccHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEcccEEEEEEEcccccccEEEEEEEEcHHHHHHHccccHHHHHHHHHccEEEccEEEccEEEEEccccccccccHHHHHcccccEEEEEcccccccccHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHccccc

cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEEEEEEccccEEEEEEcccEEEEEcccccHHHHHccEEEEEcccccHHcccHHHHHccccccccccEEEccccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEcccEEEEEEEcccccccEEEEEEEcccccHHHHccccccHHHHHHccccEccccccccEEEEEccccccHccHHHHHHHHcccEEEEEccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccccccccc

mqlslptspsklptifpfhpssipktpqsphhlslqshvgplnalksagfLSSISRAIDEEEEYRKARAAVVRKGidlegytiegvsigghetcviipelkcafdigrcptraIQQNFVFIThghldhigglpmyvasrglynlkpptifvppsikEDVEKLFEIHRSLGNVELNLDLVAldvgetyemrndivvrpfkthhvipsqGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGveitdiilspevaftgdttsefmlnprnADALRAKILITeatflddemSIEHAQQHGHTHLSEDIRQAVLKLQSKvsakvvpltegfksvyts

mqlslptspsklptiFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRslgnvelnLDLVALDVGETYEMRNDIvvrpfkthhvipsQGYVIYLLRKKLKKQYIHLKGkqieklkksgveitdiilSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSkvsakvvpltegfksvyts

*************************************************FL************YRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI**************IRQAVLKLQSKVSAKVVPL**********

*********SKLPTIFP************************************************************LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT*

*********SKLPTIFPFHPSS************LQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE***********EDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS

******TSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKVSAKVVPLTEGFKS****

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		330	2.2.26 [Sep-21-2011]
Q8L633		354	Ribonuclease Z, chloropla	yes	no	0.981	0.915	0.685	1e-137
Q8LGU7		280	Nuclear ribonuclease Z OS	no	no	0.706	0.832	0.630	3e-87
P60193		176	Nuclear ribonuclease Z (F	N/A	no	0.512	0.960	0.633	1e-62
A4YHP1		291	Ribonuclease Z OS=Metallo	yes	no	0.503	0.570	0.294	3e-10
Q9HN60		308	Ribonuclease Z OS=Halobac	yes	no	0.624	0.668	0.273	5e-10
B0R7E2		308	Ribonuclease Z OS=Halobac	yes	no	0.624	0.668	0.273	5e-10
Q973F1		293	Ribonuclease Z OS=Sulfolo	yes	no	0.572	0.645	0.302	9e-10
B1YLU8		301	Ribonuclease Z OS=Exiguob	yes	no	0.584	0.641	0.284	1e-07
Q8Q032		305	Ribonuclease Z OS=Methano	yes	no	0.630	0.681	0.283	1e-07
Q97Z88		291	Ribonuclease Z OS=Sulfolo	yes	no	0.542	0.615	0.304	1e-07

>sp\|Q8L633\|RNZC_ARATH Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1	Back alignment and function desciption

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/359 (68%), Positives = 282/359 (78%), Gaps = 35/359 (9%)

Query: 1   MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
           MQLS   P SP   P IFP   +   K P   H L+ Q        ++ +K +G+ SSIS
Sbjct: 1   MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55

Query: 56  RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
           RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56  RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115

Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
           Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175

Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
           ++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235

Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
           SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+  S EHAQ  GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295

Query: 296 THLS-------------------------EDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 329
           TH+S                         E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354

Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 1EC: 1

>sp\|Q8LGU7\|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3	Back alignment and function description

>sp\|P60193\|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1 SV=1	Back alignment and function description

>sp\|A4YHP1\|RNZ_METS5 Ribonuclease Z OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rnz PE=3 SV=1	Back alignment and function description

>sp\|Q9HN60\|RNZ_HALSA Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rnz PE=3 SV=1	Back alignment and function description

>sp\|B0R7E2\|RNZ_HALS3 Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rnz PE=3 SV=1	Back alignment and function description

>sp\|Q973F1\|RNZ_SULTO Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rnz PE=3 SV=1	Back alignment and function description

>sp\|B1YLU8\|RNZ_EXIS2 Ribonuclease Z OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rnz PE=3 SV=1	Back alignment and function description

>sp\|Q8Q032\|RNZ_METMA Ribonuclease Z OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnz PE=3 SV=1	Back alignment and function description

>sp\|Q97Z88\|RNZ_SULSO Ribonuclease Z OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rnz PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		330
255576109		361	ribonuclease z, chloroplast, putative [R	0.993	0.908	0.729	1e-146
224131708		366	predicted protein [Populus trichocarpa]	0.996	0.898	0.699	1e-139
449481110		347	PREDICTED: ribonuclease Z, chloroplastic	0.975	0.927	0.699	1e-139
449444739		347	PREDICTED: ribonuclease Z, chloroplastic	0.975	0.927	0.694	1e-138
356501243		354	PREDICTED: ribonuclease Z, chloroplastic	0.990	0.923	0.688	1e-137
297831528		353	hypothetical protein ARALYDRAFT_480092 [	0.981	0.917	0.695	1e-137
225447197		354	PREDICTED: ribonuclease Z, chloroplastic	0.978	0.912	0.702	1e-137
363806948		353	uncharacterized protein LOC100807082 [Gl	0.990	0.926	0.681	1e-136
357493079		357	Nuclear ribonuclease Z [Medicago truncat	0.969	0.896	0.686	1e-136
22325471		354	Ribonuclease Z [Arabidopsis thaliana] gi	0.981	0.915	0.685	1e-135

>gi\|255576109\|ref\|XP_002528949.1\| ribonuclease z, chloroplast, putative [Ricinus communis] gi\|223531595\|gb\|EEF33423.1\| ribonuclease z, chloroplast, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/362 (72%), Positives = 294/362 (81%), Gaps = 34/362 (9%)

Query: 1   MQLSLPTSPSKLPTIFPF-HPSS---IPKTPQSPHHLSLQSHV----GPLNALKSAGFLS 52
           MQ SLP S SK P+IFPF HP S         + H    Q+H+    GP  +LKS G+LS
Sbjct: 1   MQTSLPISHSKFPSIFPFNHPISHKPTTTRTTTEHQYPFQTHIKKPIGP-TSLKSTGYLS 59

Query: 53  SISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTR 112
           +I R I+EEEEYRKARAAV+RKGIDLEGY+IEG+SIGG ETC+IIPE KCAFDIGRCP+R
Sbjct: 60  AIGRVIEEEEEYRKARAAVIRKGIDLEGYSIEGLSIGGQETCLIIPEFKCAFDIGRCPSR 119

Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
           AI QNFVFITH HLDHIGGLPMYVASRGLYNLKPPT+FVPP IKEDVEKLF+IHRS+G V
Sbjct: 120 AIHQNFVFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIKEDVEKLFDIHRSMGQV 179

Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
           ELNL+LVALDVGETYE+RN++VVRPF+T HVIPSQGYVIY +RKKLKKQY HLKGKQIEK
Sbjct: 180 ELNLELVALDVGETYELRNNVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYTHLKGKQIEK 239

Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQ 292
           LKKSGVEITDI+LSPEVAFTGDTT+E+ML+P NADALRAK+LITEATFLD+  SIEHA+Q
Sbjct: 240 LKKSGVEITDIMLSPEVAFTGDTTAEYMLDPHNADALRAKVLITEATFLDEGFSIEHARQ 299

Query: 293 HGHTHL-------------------------SEDIRQAVLKLQSKVSAKVVPLTEGFKSV 327
           HGHTHL                          EDIRQAVLKLQSKVSAKVVPLTEGFKS 
Sbjct: 300 HGHTHLLEIIENAEWIRNKSVLLTHFSSRYTVEDIRQAVLKLQSKVSAKVVPLTEGFKST 359

Query: 328 YT 329
           Y+
Sbjct: 360 YS 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224131708\|ref\|XP_002321158.1\| predicted protein [Populus trichocarpa] gi\|222861931\|gb\|EEE99473.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449481110\|ref\|XP_004156084.1\| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449444739\|ref\|XP_004140131.1\| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356501243\|ref\|XP_003519435.1\| PREDICTED: ribonuclease Z, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|297831528\|ref\|XP_002883646.1\| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp. lyrata] gi\|297329486\|gb\|EFH59905.1\| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225447197\|ref\|XP_002277241.1\| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera] gi\|297739240\|emb\|CBI28891.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|363806948\|ref\|NP_001242565.1\| uncharacterized protein LOC100807082 [Glycine max] gi\|255636804\|gb\|ACU18735.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|357493079\|ref\|XP_003616828.1\| Nuclear ribonuclease Z [Medicago truncatula] gi\|355518163\|gb\|AES99786.1\| Nuclear ribonuclease Z [Medicago truncatula]	Back alignment and taxonomy information

>gi|22325471|ref|NP_178532.2| Ribonuclease Z [Arabidopsis thaliana] gi|41017757|sp|Q8L633.1|RNZC_ARATH RecName: Full=Ribonuclease Z, chloroplastic; Short=RNase Z; AltName: Full=Zinc phosphodiesterase CPZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z; Flags: Precursor gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis thaliana] gi|24899839|gb|AAN65134.1| unknown protein [Arabidopsis thaliana] gi|330250749|gb|AEC05843.1| Ribonuclease Z [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		330
TAIR\|locus:2058374		354	CPZ [Arabidopsis thaliana (tax	0.960	0.895	0.693	4.4e-116
TAIR\|locus:2019235		280	TRZ1 "tRNAse Z1" [Arabidopsis	0.724	0.853	0.620	3.1e-83
UNIPROTKB\|G4NGZ0		381	MGG_17714 "Uncharacterized pro	0.409	0.354	0.317	1.5e-10

TAIR\|locus:2058374 CPZ [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 231/333 (69%), Positives = 265/333 (79%)

Query:     1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
             MQLS   P SP   P IFP   +   K P   H L+ Q        ++ +K +G+ SSIS
Sbjct:     1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55

Query:    56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
             RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct:    56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115

Query:   116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
             Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct:   116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175

Query:   176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
             ++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct:   176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235

Query:   236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
             SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+  S EHAQ  GH
Sbjct:   236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295

Query:   296 THLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 328
             TH+S+ I  A       + +K V LT  F S Y
Sbjct:   296 THISQIIENA-----KWIRSKTVLLTH-FSSRY 322

GO:0005634 "nucleus" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=TAS

GO:0009507 "chloroplast" evidence=ISS

GO:0042781 "3'-tRNA processing endoribonuclease activity" evidence=IDA

GO:0042780 "tRNA 3'-end processing" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

TAIR\|locus:2019235 TRZ1 "tRNAse Z1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NGZ0 MGG_17714 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L633	RNZC_ARATH	3, ., 1, ., 2, 6, ., 1, 1	0.6852	0.9818	0.9152	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26.11	0.991
3rd Layer	3.1.26	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		330
TIGR02651		299	TIGR02651, RNase_Z, ribonuclease Z	2e-21
COG1234		292	COG1234, ElaC, Metal-dependent hydrolases of the b	5e-18
TIGR02650		277	TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermot	3e-12
PRK00055		270	PRK00055, PRK00055, ribonuclease Z; Reviewed	1e-11
pfam12706		197	pfam12706, Lactamase_B_2, Beta-lactamase superfami	9e-10
COG0595		555	COG0595, COG0595, mRNA degradation ribonucleases J	2e-08
COG1236		427	COG1236, YSH1, Predicted exonuclease of the beta-l	2e-06
smart00849		177	smart00849, Lactamase_B, Metallo-beta-lactamase su	1e-05
pfam00753		148	pfam00753, Lactamase_B, Metallo-beta-lactamase sup	2e-05
TIGR02649		303	TIGR02649, true_RNase_BN, ribonuclease BN	5e-04
TIGR00649		422	TIGR00649, MG423, conserved hypothetical protein	7e-04
COG1237		259	COG1237, COG1237, Metal-dependent hydrolases of th	0.004

>gnl\|CDD\|233963 TIGR02651, RNase_Z, ribonuclease Z	Back alignment and domain information

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 38/219 (17%)

Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
           +FITH H DHI GLP  +++      K P TI+ PP IKE +E    +  +  N  +   
Sbjct: 55  IFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTYLNYPIK-- 112

Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
           +  ++ G      +   V  F   H IPS GY            R+K K+  + +    +
Sbjct: 113 IHEIEEGGLVFEDDGFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKE--LGIPPGPL 170

Query: 231 EKLKKSGVEIT---DIILSPE-----------VAFTGDT--TSEFMLNPRNADALRAKIL 274
               K G  +T     I+ PE           +A+TGDT    E +   +NAD     +L
Sbjct: 171 YGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNAD-----LL 225

Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEDIRQAVLKLQSKV 313
           I EATFLD++   + A+++GH+  ++    A    ++ V
Sbjct: 226 IHEATFLDEDK--KLAKEYGHSTAAQAAEIA---KEANV 259

Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN [Transcription, RNA processing]. Length = 299

>gnl\|CDD\|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|188239 TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermotoga type	Back alignment and domain information

>gnl\|CDD\|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed	Back alignment and domain information

>gnl\|CDD\|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain	Back alignment and domain information

>gnl\|CDD\|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	Back alignment and domain information

>gnl\|CDD\|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily	Back alignment and domain information

>gnl\|CDD\|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily	Back alignment and domain information

>gnl\|CDD\|131697 TIGR02649, true_RNase_BN, ribonuclease BN	Back alignment and domain information

>gnl\|CDD\|233071 TIGR00649, MG423, conserved hypothetical protein	Back alignment and domain information

>gnl\|CDD\|224158 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		330
TIGR02649		303	true_RNase_BN ribonuclease BN. Members of this pro	100.0
TIGR02650		277	RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me	100.0
TIGR02651		299	RNase_Z ribonuclease Z. Processing of the 3-prime	100.0
PRK02113		252	putative hydrolase; Provisional	100.0
PRK11244		250	phnP carbon-phosphorus lyase complex accessory pro	100.0
PRK05184		302	pyrroloquinoline quinone biosynthesis protein PqqB	100.0
COG1234		292	ElaC Metal-dependent hydrolases of the beta-lactam	100.0
PRK02126		334	ribonuclease Z; Provisional	100.0
TIGR02108		302	PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B.	100.0
TIGR03307		238	PhnP phosphonate metabolism protein PhnP. This fam	100.0
KOG2121		746	consensus Predicted metal-dependent hydrolase (bet	99.95
PRK00055		270	ribonuclease Z; Reviewed	99.94
PF12706		194	Lactamase_B_2: Beta-lactamase superfamily domain;	99.9
TIGR00649		422	MG423 conserved hypothetical protein. Contains an	99.86
COG1235		269	PhnP Metal-dependent hydrolases of the beta-lactam	99.81
TIGR03675		630	arCOG00543 arCOG00543 universal archaeal KH-domain	99.79
COG0595		555	mRNA degradation ribonucleases J1/J2 (metallo-beta	99.76
PRK04286		298	hypothetical protein; Provisional	99.75
PRK00685		228	metal-dependent hydrolase; Provisional	99.74
COG1236		427	YSH1 Predicted exonuclease of the beta-lactamase f	99.72
KOG1136		501	consensus Predicted cleavage and polyadenylation s	99.66
COG1782		637	Predicted metal-dependent RNase, consists of a met	99.66
PRK11709		355	putative L-ascorbate 6-phosphate lactonase; Provis	99.52
PF02112		335	PDEase_II: cAMP phosphodiesterases class-II; Inter	99.5
smart00849		183	Lactamase_B Metallo-beta-lactamase superfamily. Ap	99.5
PRK11921		394	metallo-beta-lactamase/flavodoxin domain-containin	99.38
TIGR03413		248	GSH_gloB hydroxyacylglutathione hydrolase. Members	99.35
COG5212		356	PDE1 Low-affinity cAMP phosphodiesterase [Signal t	99.32
KOG1137		668	consensus mRNA cleavage and polyadenylation factor	99.32
PLN02469		258	hydroxyacylglutathione hydrolase	99.28
PRK10241		251	hydroxyacylglutathione hydrolase; Provisional	99.27
PRK05452		479	anaerobic nitric oxide reductase flavorubredoxin;	99.26
PLN02398		329	hydroxyacylglutathione hydrolase	99.26
PF00753		194	Lactamase_B: Metallo-beta-lactamase superfamily; I	99.16
PLN02962		251	hydroxyacylglutathione hydrolase	99.13
COG0491		252	GloB Zn-dependent hydrolases, including glyoxylase	99.02
PF13483		163	Lactamase_B_3: Beta-lactamase superfamily domain;	99.01
KOG0813		265	consensus Glyoxylase [General function prediction	98.9
KOG1361		481	consensus Predicted hydrolase involved in interstr	98.84
KOG1135		764	consensus mRNA cleavage and polyadenylation factor	98.78
COG2220		258	Predicted Zn-dependent hydrolases of the beta-lact	98.66
COG1237		259	Metal-dependent hydrolases of the beta-lactamase s	98.64
TIGR00361		662	ComEC_Rec2 DNA internalization-related competence	98.63
COG0426		388	FpaA Uncharacterized flavoproteins [Energy product	98.62
PRK11539		755	ComEC family competence protein; Provisional	98.55
COG2333		293	ComEC Predicted hydrolase (metallo-beta-lactamase	98.49
COG2248		304	Predicted hydrolase (metallo-beta-lactamase superf	98.25
KOG0814		237	consensus Glyoxylase [General function prediction	98.17
PF13691		63	Lactamase_B_4: tRNase Z endonuclease	97.73
KOG2121		746	consensus Predicted metal-dependent hydrolase (bet	97.25
KOG1138		653	consensus Predicted cleavage and polyadenylation s	96.67
PF14597		199	Lactamase_B_5: Metallo-beta-lactamase superfamily;	96.55
KOG3798		343	consensus Predicted Zn-dependent hydrolase (beta-l	96.38
COG2015		655	Alkyl sulfatase and related hydrolases [Secondary	96.3
COG0595		555	mRNA degradation ribonucleases J1/J2 (metallo-beta	86.28
KOG3592		934	consensus Microtubule-associated proteins [Cytoske	85.04
KOG4736		302	consensus Uncharacterized conserved protein [Funct	84.8

>TIGR02649 true_RNase_BN ribonuclease BN	Back alignment and domain information

Probab=100.00  E-value=4.3e-38  Score=293.03  Aligned_cols=226  Identities=24%  Similarity=0.316  Sum_probs=176.3

Q ss_pred             CceEEEEeC------CcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcCC-CCCCEEEcCcc
Q 020181           90 GHETCVIIP------ELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS  154 (330)
Q Consensus        90 ~~~t~~li~------~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~-~~~l~Iy~~~~  154 (330)
                      ++++|++++      +..+|||||+++++++        +|++|||||.|+||+.|++.++.++.+.+ .++++||||+.
T Consensus        15 r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~   94 (303)
T TIGR02649        15 RNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG   94 (303)
T ss_pred             CCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechh
Confidence            677888883      2589999999998764        69999999999999999999876554433 46789999999


Q ss_pred             hHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccc--cchhh---hcCC-ChH
Q 020181          155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQ---YIHL-KGK  228 (330)
Q Consensus       155 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~--kl~~~---~~~~-pg~  228 (330)
                      +.+.++..+......  ..+.++++++.+++.+..+ +++|+++++.|..+++||+|+++++  +++.+   .+|+ ||+
T Consensus        95 ~~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~  171 (303)
T TIGR02649        95 IREFVETALRISGSW--TDYPLEIVEIGAGEILDDG-LRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGP  171 (303)
T ss_pred             HHHHHHHHHHhcccc--cCCceEEEEcCCCceEecC-CeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCCh
Confidence            998887765432211  1235677888888888876 8999999999999999999987654  56444   7799 799


Q ss_pred             HHHHHHHcC-ceeece------------eecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCC
Q 020181          229 QIEKLKKSG-VEITDI------------ILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH  295 (330)
Q Consensus       229 ~~~~L~~~G-~~i~~~------------~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H  295 (330)
                      ++++|++.. +.+.|.            ..+++++|+|||.+.   +....+++++|+|||||||.++.  .+.|..++|
T Consensus       172 ~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~---~~~~~~~~~adlLi~Eat~~~~~--~~~a~~~~H  246 (303)
T TIGR02649       172 LFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC---DAALDLAKGVDVMVHEATLDITM--EAKANSRGH  246 (303)
T ss_pred             HHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCCh---HHHHHHhcCCCEEEEeccCChhh--HHHHhhcCC
Confidence            999998733 222221            246789999999984   23345789999999999998776  566778999


Q ss_pred             CCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181          296 THLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT  329 (330)
Q Consensus       296 ~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~  329 (330)
                      +|++|++..+ ++++..     .++|+|||+||.
T Consensus       247 ~t~~~a~~~a-~~~~~k-----~lvL~H~s~~y~  274 (303)
T TIGR02649       247 SSTRQAATLA-REAGVG-----KLIITHVSSRYD  274 (303)
T ss_pred             CCHHHHHHHH-HHcCCC-----EEEEEEeccccC
Confidence            9999887776 344433     689999999996

Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.

>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type	Back alignment and domain information

>TIGR02651 RNase_Z ribonuclease Z	Back alignment and domain information

>PRK02113 putative hydrolase; Provisional	Back alignment and domain information

>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional	Back alignment and domain information

>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	Back alignment and domain information

>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]	Back alignment and domain information

>PRK02126 ribonuclease Z; Provisional	Back alignment and domain information

>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B	Back alignment and domain information

>TIGR03307 PhnP phosphonate metabolism protein PhnP	Back alignment and domain information

>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>PRK00055 ribonuclease Z; Reviewed	Back alignment and domain information

>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A	Back alignment and domain information

>TIGR00649 MG423 conserved hypothetical protein	Back alignment and domain information

>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	Back alignment and domain information

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein	Back alignment and domain information

>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	Back alignment and domain information

>PRK04286 hypothetical protein; Provisional	Back alignment and domain information

>PRK00685 metal-dependent hydrolase; Provisional	Back alignment and domain information

>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]	Back alignment and domain information

>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional	Back alignment and domain information

>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3	Back alignment and domain information

>smart00849 Lactamase_B Metallo-beta-lactamase superfamily	Back alignment and domain information

>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional	Back alignment and domain information

>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase	Back alignment and domain information

>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>PLN02469 hydroxyacylglutathione hydrolase	Back alignment and domain information

>PRK10241 hydroxyacylglutathione hydrolase; Provisional	Back alignment and domain information

>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional	Back alignment and domain information

>PLN02398 hydroxyacylglutathione hydrolase	Back alignment and domain information

>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []	Back alignment and domain information

>PLN02962 hydroxyacylglutathione hydrolase	Back alignment and domain information

>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]	Back alignment and domain information

>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A	Back alignment and domain information

>KOG0813 consensus Glyoxylase [General function prediction only]	Back alignment and domain information

>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]	Back alignment and domain information

>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	Back alignment and domain information

>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	Back alignment and domain information

>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2	Back alignment and domain information

>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]	Back alignment and domain information

>PRK11539 ComEC family competence protein; Provisional	Back alignment and domain information

>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>KOG0814 consensus Glyoxylase [General function prediction only]	Back alignment and domain information

>PF13691 Lactamase_B_4: tRNase Z endonuclease	Back alignment and domain information

>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]	Back alignment and domain information

>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B	Back alignment and domain information

>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]	Back alignment and domain information

>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	Back alignment and domain information

>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]	Back alignment and domain information

>KOG4736 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		330
1ww1_A		280	Crystal Structure Of Trnase Z From Thermotoga Marit		3e-12
2cbn_A		306	Crystal Structure Of Zipd From Escherichia Coli Len		3e-04

>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima Length = 280

Back alignment and structure

Iteration: 1

Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 21/217 (9%) Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136 I G S T + + FD G ++ +VF+THGH+DHI GL V Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61 Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191 R G+ + + P P VE+ E I R+ ++ + ++ L GE +RN Sbjct: 62 NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121 Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245 V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+ Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181 Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282 + +GD+ + L+P ++LI E TFLD Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD 213

PyMOL of 1ww1

>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli Length = 306

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		330
2e7y_A		280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	9e-52
1y44_A		320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	3e-20
2cbn_A		306	Ribonuclease Z; phosphodiesterase beta lactamase t	3e-19
1zkp_A		268	Hypothetical protein BA1088; zinc binding protein,	7e-17
3zwf_A		368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	2e-15
3bk2_A		562	RNAse J, metal dependent hydrolase; endoribonuclea	1e-06
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	4e-06
3zq4_A		555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	7e-06
2az4_A		429	Hypothetical protein EF2904; structural genomics,	2e-05
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	8e-05
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	1e-04
3md7_A		293	Beta-lactamase-like; ssgcid, hydrolase, structural	2e-04
3jxp_A		321	Coenzyme PQQ synthesis protein B; alpha-beta prote	2e-04
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280	Back alignment and structure

 Score =  171 bits (436), Expect = 9e-52
 Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 27/236 (11%)

Query: 82  TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYV 136
            I G S     T +     +  FD G   +  +         VF+THGH+DHI GL   V
Sbjct: 2   NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61

Query: 137 ASRGLYNL---KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND- 192
             R        KP  +F P   +   E    I R+  ++  + ++  L  GE   +RN  
Sbjct: 62  NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121

Query: 193 ---IVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
                V+PF+T HV    S GY I+ +R+KLKK++  L  K+I +L K+ G + +T+   
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181

Query: 246 SPEVAFTGDTTSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSE 300
              +  +GD+         + + +R  ++LI E TFLD        +   H  + E
Sbjct: 182 KKVLTISGDSL------ALDPEEIRGTELLIHECTFLDA----RDRRYKNHAAIDE 227

PyMOL of 2e7y

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320	Back alignment and structure

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306	Back alignment and structure

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268	Back alignment and structure

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Length = 368	Back alignment and structure

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651	Back alignment and structure

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555	Back alignment and structure

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640	Back alignment and structure

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459	Back alignment and structure

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Length = 293	Back alignment and structure

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		330
3jxp_A		321	Coenzyme PQQ synthesis protein B; alpha-beta prote	100.0
3zwf_A		368	Zinc phosphodiesterase ELAC protein 1; beta-lactam	100.0
3g1p_A		258	Protein PHNP; C-P lyase, phosphodiesterase, phosph	100.0
3md7_A		293	Beta-lactamase-like; ssgcid, hydrolase, structural	100.0
2e7y_A		280	TRNAse Z; tRNA maturation, metallo-beta-lactaMSe,	100.0
2cbn_A		306	Ribonuclease Z; phosphodiesterase beta lactamase t	100.0
1y44_A		320	Ribonuclease Z; zinc-dependent metal hydrolase, hy	100.0
1zkp_A		268	Hypothetical protein BA1088; zinc binding protein,	99.94
2az4_A		429	Hypothetical protein EF2904; structural genomics,	99.86
3iek_A		431	Ribonuclease TTHA0252; metallo beta lactamase fold	99.85
3bk2_A		562	RNAse J, metal dependent hydrolase; endoribonuclea	99.85
3zq4_A		555	Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat	99.82
3af5_A		651	Putative uncharacterized protein PH1404; archaeal	99.8
2i7t_A		459	Cleavage and polyadenylation specificity factor 73	99.8
2xr1_A		640	Cleavage and polyadenylation specificity factor 1	99.79
2ycb_A		636	Beta-CAsp RNAse, cleavage and polyadenylation spec	99.79
2i7x_A		717	Protein CFT2; polyadenylation, metallo-B-lactamase	99.78
3kl7_A		235	Putative metal-dependent hydrolase; structural gen	99.78
3zdk_A		336	5' exonuclease apollo; hydrolase; HET: TLA; 2.16A	99.74
4b87_A		367	DNA cross-LINK repair 1A protein; dclre1A, DCLRE,	99.73
2wyl_A		360	L-ascorbate-6-phosphate lactonase ULAG; hydrolase;	99.73
3bv6_A		379	Metal-dependent hydrolase; metallo protein, beta-l	99.72
3rpc_A		264	Possible metal-dependent hydrolase; structural gen	99.7
1vjn_A		220	Zn-dependent hydrolase of metallo-beta-lactamase s	99.69
2xf4_A		210	Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A	99.51
3l6n_A		219	Metallo-beta-lactamase; zinc, hydolase, antibiotic	99.47
3m8t_A		294	'BLR6230 protein; subclass B3 beta-lactamase, zinc	99.47
3adr_A		261	Putative uncharacterized protein ST1585; quorum se	99.45
2r2d_A		276	AGR_PTI_140P, Zn-dependent hydrolases; lactonase,	99.45
1k07_A		263	FEZ-1 beta-lactamase; monomer with alpha-beta/BETA	99.44
2p4z_A		284	Metal-dependent hydrolases of the beta-lactamase s	99.44
3hnn_A		262	Putative diflavin flavoprotein A 5; PSI-2, protein	99.43
4efz_A		298	Metallo-beta-lactamase family protein; structural	99.43
1xm8_A		254	Glyoxalase II; structural genomics, protein struct	99.41
1e5d_A		402	Rubredoxin\:oxygen oxidoreductase; oxygenreductase	99.4
2qed_A		258	Hydroxyacylglutathione hydrolase; metallo-B- super	99.4
1qh5_A		260	Glyoxalase II, protein (hydroxyacylglutathione hyd	99.39
2zwr_A		207	Metallo-beta-lactamase superfamily protein; hydrol	99.39
1ycg_A		398	Nitric oxide reductase; DIIRON site, oxidoreductas	99.39
3tp9_A		474	Beta-lactamase and rhodanese domain protein; struc	99.37
2zo4_A		317	Metallo-beta-lactamase family protein; hydrolase;	99.37
1a7t_A		232	Metallo-beta-lactamase; hydrolase (beta-lactamase)	99.37
2ohh_A		404	Type A flavoprotein FPRA; beta-lactamase like doma	99.37
3dha_A		254	N-acyl homoserine lactone hydrolase; zinc bimetall	99.36
2gcu_A		245	Putative hydroxyacylglutathione hydrolase 3; ethyl	99.35
4ad9_A		289	Lactb2, beta-lactamase-like protein 2; hydrolase,	99.35
4ax1_B		303	Metallo-beta-lactamase AIM-1; hydrolase, antibioti	99.35
1sml_A		269	Protein (penicillinase); metallo-beta-lactamase, a	99.34
2p18_A		311	Glyoxalase II; metalloprotein, beta sandwich, alph	99.33
1mqo_A		227	Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd	99.33
1m2x_A		223	Class B carbapenemase BLAB-1; alpha-beta/BETA-alph	99.33
2bib_A		547	CBPE, teichoic acid phosphorylcholine esterase/ ch	99.32
3aj3_A		274	MLR6805 protein, 4-pyridoxolactonase; Zn-protein,	99.29
2q9u_A		414	A-type flavoprotein; flavodoxin like, beta lactama	99.29
2vw8_A		303	PA1000, PQSE; quinolone signal response protein, s	99.29
3r2u_A		466	Metallo-beta-lactamase family protein; structural	99.29
4hl2_A		243	Beta-lactamase NDM-1; structural genomics, PSI-bio	99.26
4dik_A		410	Flavoprotein; TM0755, electron transport, DI-iron	99.24
2fhx_A		246	SPM-1; metallo-beta-lactamase, dinuclear zinc, ant	99.24
3q6v_A		233	Beta-lactamase; metalloenzyme, alpha-beta, hydrola	99.23
1ztc_A		221	Hypothetical protein TM0894; structural genomics,	99.23
2y8b_A		265	Metallo-B-lactamase; hydrolase, cephalosporins, an	99.17
3esh_A		280	Protein similar to metal-dependent hydrolase; stru	99.17
1p9e_A		331	Methyl parathion hydrolase; Zn containing; 2.40A {	99.16
3iog_A		227	Beta-lactamase; hydrolase, antibiotic resistance,	99.15
1jjt_A		228	IMP-1 metallo beta-lactamase; metallo-beta-lactama	99.15
4eyb_A		270	Beta-lactamase NDM-1; metallo beta lactamase, anti	98.97
2cfu_A		658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	98.9
2p97_A		201	Hypothetical protein; putative metal-dependent hyd	98.8
2yhe_A		668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	98.08
3h3e_A		267	Uncharacterized protein TM1679; structural genomic	97.85

>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A	Back alignment and structure

Probab=100.00  E-value=3.2e-38  Score=294.61  Aligned_cols=232  Identities=10%  Similarity=0.122  Sum_probs=169.4

Q ss_pred             CcccccccchhhhhhhhhhHHHHHHHHhhhccccceeccCeEEEEEEecCceEEEEe--CCcE-EEEecCCCCccc----
Q 020181           41 PLNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELK-CAFDIGRCPTRA----  113 (330)
Q Consensus        41 ~~~~~lGtG~~~giP~~~c~c~~c~~ar~~~~r~s~~~~~~~i~g~~~g~~~t~~li--~~~~-iLiD~G~~~~~~----  113 (330)
                      +..++||||+++|+|+++|.|++|++||+.+.+.             ..|..+|++|  ++.. +|||||+++..+    
T Consensus         3 M~~~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~-------------~~R~~ss~li~~~~~~~iLiD~G~~~~~~l~~~   69 (321)
T 3jxp_A            3 MYIQVLGSAAGGGFPQWNCNCVNCKGYRDGTLKA-------------TARTQSSIALSDDGVHWILCNASPDIRAQLQAF   69 (321)
T ss_dssp             EEEEEEECBCTTTBTTTTCCSHHHHHHHHTCSCC-------------CCBCBCEEEEESSSSSEEEECCCTTHHHHHHTC
T ss_pred             EEEEEEEeCCCCCCCcCCcCCccchhhhhCCCCC-------------CcccceEEEEEeCCceEEEEeCCchHHHHHHhc
Confidence            4567899999999999999999999998643321             0145678888  4454 999999986432    


Q ss_pred             -----------ccccEEEecCCChhhhCCHHHHHHHhCcCCCCCCEEEcCcchHHHHHHHHHHhhhcCCcccceEEEEcC
Q 020181          114 -----------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALD  182 (330)
Q Consensus       114 -----------l~i~~IfiTH~H~DHi~Gl~~l~~~~~~~~~~~l~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~  182 (330)
                                 .+|++|||||.|+||++|++.|.+      ..+++||+++.+.+.++..+..+..+......++++.++
T Consensus        70 ~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~------~~~~~vy~~~~~~~~l~~~~~~f~~~~~~~~~i~~~~i~  143 (321)
T 3jxp_A           70 APMQPARALRDTGINAIVLLDSQIDHTTGLLSLRE------GCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIE  143 (321)
T ss_dssp             GGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGG------GCCEEEEECHHHHHHTTTTSCHHHHHTTTTTCEEEEECC
T ss_pred             ccccccccCCcccCCEEEECCCChhhhhhHHHHHh------cCCCeEEECHHHHHHHHhhCccccccccccCceeEEEcC
Confidence                       268999999999999999998843      246789999999887764321111111111237788999


Q ss_pred             CCCEEEe---CCcEEEEEEEcC--------CC-----CCceEEEEEeccccchhhhcCCChHHHHHHHHcCceeeceeec
Q 020181          183 VGETYEM---RNDIVVRPFKTH--------HV-----IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS  246 (330)
Q Consensus       183 ~g~~~~i---~~~~~v~~~~~~--------H~-----~~s~gy~i~~~~~kl~~~~~~~pg~~~~~L~~~G~~i~~~~~~  246 (330)
                      +++++++   + +++|+++++.        |.     .+++||+|+...                    .|         
T Consensus       144 ~g~~~~i~~~~-~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~--------------------~g---------  193 (321)
T 3jxp_A          144 LEGSFVIDACP-NLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTR--------------------TG---------  193 (321)
T ss_dssp             SSSCEECTTST-TEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETT--------------------TC---------
T ss_pred             CCCeEEeccCC-CeEEEEEEecCCccccccccccccCCCcEEEEEEecC--------------------CC---------
Confidence            9999999   7 9999999997        65     489999998311                    12         


Q ss_pred             CeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccH------HHHHhcCCCCch---hHHHHHHHhcccccCCce
Q 020181          247 PEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI------EHAQQHGHTHLS---EDIRQAVLKLQSKVSAKV  317 (330)
Q Consensus       247 ~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~------~~a~~~~H~t~~---~~~~~~l~~~~~~~~~~~  317 (330)
                      ++++|+|||.+..  ++...+++++|+||+||||..++...      +.+..++|++.+   +++..+ ++++..     
T Consensus       194 ~~i~y~~Dt~~~~--~~~~~~~~~~D~li~eat~~~d~e~~~~glk~r~~~~~gH~s~~~~~eA~~~a-~~~~~k-----  265 (321)
T 3jxp_A          194 GKLFYAPGLGQVD--EKLLAMMHGADCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVL-DGFPRQ-----  265 (321)
T ss_dssp             CEEEEESSCCCCC--HHHHHHHHHCSEEEEECCCSSTTHHHHHTSCSCCCC-CCCCCSSSTTCHHHHH-TTCSSS-----
T ss_pred             cEEEEECCCCCCC--HHHHHHhcCCCEEEEeCCCCCcHHHhhccccccccCCCcccCCCCHHHHHHHH-HhCCCC-----
Confidence            5899999998521  23345678999999999987755211      122467999998   776655 455443     


Q ss_pred             EEEeccccCcCC
Q 020181          318 VPLTEGFKSVYT  329 (330)
Q Consensus       318 ~i~ltHfs~ry~  329 (330)
                      .++++|+|+++.
T Consensus       266 ~lvLtH~s~~np  277 (321)
T 3jxp_A          266 RKVLIHINNTNP  277 (321)
T ss_dssp             EEEEESBCTTCG
T ss_pred             eEEEEEeCCCCc
Confidence            789999999973

PyMOL of 3jxp

>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}	Back alignment and structure

>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A	Back alignment and structure

>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*	Back alignment and structure

>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A	Back alignment and structure

>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7	Back alignment and structure

>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*	Back alignment and structure

>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9	Back alignment and structure

>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10	Back alignment and structure

>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*	Back alignment and structure

>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*	Back alignment and structure

>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}	Back alignment and structure

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*	Back alignment and structure

>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A	Back alignment and structure

>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}	Back alignment and structure

>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10	Back alignment and structure

>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}	Back alignment and structure

>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}	Back alignment and structure

>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}	Back alignment and structure

>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*	Back alignment and structure

>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}	Back alignment and structure

>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}	Back alignment and structure

>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4	Back alignment and structure

>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}	Back alignment and structure

>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0	Back alignment and structure

>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A	Back alignment and structure

>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}	Back alignment and structure

>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}	Back alignment and structure

>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A	Back alignment and structure

>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}	Back alignment and structure

>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}	Back alignment and structure

>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A	Back alignment and structure

>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3	Back alignment and structure

>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2	Back alignment and structure

>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*	Back alignment and structure

>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A	Back alignment and structure

>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*	Back alignment and structure

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}	Back alignment and structure

>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*	Back alignment and structure

>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*	Back alignment and structure

>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A	Back alignment and structure

>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}	Back alignment and structure

>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}	Back alignment and structure

>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B	Back alignment and structure

>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A	Back alignment and structure

>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*	Back alignment and structure

>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...	Back alignment and structure

>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1	Back alignment and structure

>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*	Back alignment and structure

>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A	Back alignment and structure

>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}	Back alignment and structure

>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*	Back alignment and structure

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}	Back alignment and structure

>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A	Back alignment and structure

>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*	Back alignment and structure

>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}	Back alignment and structure

>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A	Back alignment and structure

>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11	Back alignment and structure

>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A	Back alignment and structure

>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}	Back alignment and structure

>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5	Back alignment and structure

>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A	Back alignment and structure

>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A	Back alignment and structure

>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A	Back alignment and structure

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*	Back alignment and structure

>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12	Back alignment and structure

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}	Back alignment and structure

>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		330
d2e7ya1		280	d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther	2e-20
d2dkfa1		431	d.157.1.10 (A:1-431) Putative RNA-degradation prot	6e-07
d2i7xa1		514	d.157.1.10 (A:1-422,A:626-717) Cleavage factor two	2e-06
d2i7ta1		451	d.157.1.10 (A:9-459) Cleavage and polyadenylation	4e-06
d2az4a1		183	d.157.1.10 (A:56-238) Hypothetical protein EF2904	9e-05
d1y44a1		307	d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci	2e-04
d1xtoa_		304	d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P	7e-04

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Thermotoga maritima [TaxId: 2336]

 Score = 87.5 bits (215), Expect = 2e-20
 Identities = 62/238 (26%), Positives = 93/238 (39%), Gaps = 21/238 (8%)

Query: 82  TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYV 136
            I G S     T +     +  FD G   +  +         VF+THGH+DHI GL   V
Sbjct: 2   NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61

Query: 137 ASRGL---YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-- 191
             R        KP  +F P   +   E    I R+  ++  + ++  L  GE   +RN  
Sbjct: 62  NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121

Query: 192 --DIVVRPFKTHH--VIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSP 247
                V+PF+T H     S GY I+ +R+KLKK++  L  K+I +L K            
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181

Query: 248 EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEDIRQA 305
           +   T    S  +           ++LI E TFLD        +   H  + E +   
Sbjct: 182 KKVLTISGDSLALDPEE---IRGTELLIHECTFLDA----RDRRYKNHAAIDEVMESV 232

PyMOL of d2e7ya1

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431	Back information, alignment and structure

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451	Back information, alignment and structure

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183	Back information, alignment and structure

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307	Back information, alignment and structure

>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		330
d2cbna1		305	Ribonuclease Z (RNase Z) {Escherichia coli [TaxId:	100.0
d1y44a1		307	Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId	100.0
d1xtoa_		304	Coenzyme PQQ synthesis protein B, PqqB {Pseudomona	99.98
d2e7ya1		280	Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax	99.97
d1zkpa1		244	Hypothetical protein BA1088 (BAS1016) {Bacillus an	99.96
d2dkfa1		431	Putative RNA-degradation protein TTHA0252 {Thermus	99.84
d2az4a1		183	Hypothetical protein EF2904 {Enterococcus faecalis	99.83
d2i7xa1		514	Cleavage factor two protein 2, CFT2 {Baker's yeast	99.72
d2i7ta1		451	Cleavage and polyadenylation specificity factor su	99.71
d2qeda1		251	Glyoxalase II (hydroxyacylglutathione hydrolase) {	99.34
d1qh5a_		260	Glyoxalase II (hydroxyacylglutathione hydrolase) {	99.32
d1ycga2		249	Nitric oxide reductase N-terminal domain {Moorella	99.32
d1xm8a_		254	Glyoxalase II (hydroxyacylglutathione hydrolase) {	99.3
d1e5da2		249	Rubredoxin oxygen:oxidoreductase (ROO), N-terminal	99.27
d2q0ia1		298	Quinolone signal response protein PqsE {Pseudomona	99.26
d1k07a_		262	Zn metallo-beta-lactamase {Fluoribacter gormanii,	99.22
d2aioa1		266	Zn metallo-beta-lactamase {Xanthomonas maltophilia	99.18
d1vjna_		209	Hypothetical protein TM0207 {Thermotoga maritima [	99.16
d1p9ea_		294	Methyl parathion hydrolase {Pseudomonas sp. WBC-3	99.15
d2gmna1		264	Zn metallo-beta-lactamase {Bradyrhizobium japonicu	99.15
d1ztca1		207	Hypothetical protein TM0894 {Thermotoga maritima [	99.14
d1x8ha_		228	Zn metallo-beta-lactamase {Aeromonas hydrophila, C	99.07
d1vmea2		250	ROO-like flavoprotein TM0755, N-terminal domain {T	99.07
d1ko3a_		230	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	99.01
d1wraa1		305	Teichoic acid phosphorylcholine esterase Pce (LytD	98.99
d1m2xa_		219	Zn metallo-beta-lactamase {Chryseobacterium mening	98.99
d1mqoa_		221	Zn metallo-beta-lactamase {Bacillus cereus [TaxId:	98.98
d1znba_		230	Zn metallo-beta-lactamase {Bacteroides fragilis [T	98.92
d1jjta_		220	Zn metallo-beta-lactamase {Pseudomonas aeruginosa,	98.8
d2cfua2		505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	98.62
d2p97a1		200	Hypothetical protein Ava3068 {Anabaena variabilis	98.07

>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: RNase Z-like
domain: Ribonuclease Z (RNase Z)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-33  Score=258.30  Aligned_cols=226  Identities=23%  Similarity=0.291  Sum_probs=173.9

Q ss_pred             CceEEEEe------CCcEEEEecCCCCcccc--------cccEEEecCCChhhhCCHHHHHHHhCcC-CCCCCEEEcCcc
Q 020181           90 GHETCVII------PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS  154 (330)
Q Consensus        90 ~~~t~~li------~~~~iLiD~G~~~~~~l--------~i~~IfiTH~H~DHi~Gl~~l~~~~~~~-~~~~l~Iy~~~~  154 (330)
                      |+++|++|      ++..+|||||+|+++++        +|++|||||.|+||++||+.|+..+++. +.+++.||+|+.
T Consensus        17 r~~s~~li~~~~~~~~~~iL~DcG~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~i~gP~~   96 (305)
T d2cbna1          17 RNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG   96 (305)
T ss_dssp             CCBCEEEEECCCSSCCCEEEECCCTTHHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTT
T ss_pred             CccCEEEEEEecCCCCcEEEEeCchHHHHHHHHhCCCHHHCcEEEEccccHHHhCchhhhhhhhhccCCcccccccCChh
Confidence            56778888      35689999999986653        6999999999999999999998755444 367899999999


Q ss_pred             hHHHHHHHHHHhhhcCCcccceEEEEcCCCCEEEeCCcEEEEEEEcCCCCCceEEEEEeccc--cchh---hhcCC-ChH
Q 020181          155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKK---QYIHL-KGK  228 (330)
Q Consensus       155 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~g~~~~i~~~~~v~~~~~~H~~~s~gy~i~~~~~--kl~~---~~~~~-pg~  228 (330)
                      +.++++..+......  ....+++++......++.+ .+++.+++..|..++.+|++.+...  +++.   ...+. +++
T Consensus        97 ~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (305)
T d2cbna1          97 IREFVETALRISGSW--TDYPLEIVEIGAGEILDDG-LRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGP  173 (305)
T ss_dssp             HHHHHHHHHHHTTCC--CSSCEEEEECCSEEEEECS-SEEEEEEECBSSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSH
T ss_pred             HHHHHHHHhhhhccc--ccccceeeecccccceecc-ceeEEeeeccccccccccccccccCCccchhhhhhhcCCCCch
Confidence            999988776654322  1235666666665667765 8999999999999999999987643  3332   25677 699


Q ss_pred             HHHHHHHcC-ceee------------ceeecCeEEEecCCCCccccCchhhhhcCCCEEEEEEecCCCcccHHHHHhcCC
Q 020181          229 QIEKLKKSG-VEIT------------DIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH  295 (330)
Q Consensus       229 ~~~~L~~~G-~~i~------------~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~lI~E~t~~~~~~~~~~a~~~~H  295 (330)
                      .+.+|+..+ +.+.            ....+.+++|+|||++.+   ....+++++|+|||||||.+++  ..+|..++|
T Consensus       174 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~sgDt~~~~---~l~~~~~~~d~LI~E~t~~~~~--~~~a~~~~H  248 (305)
T d2cbna1         174 LFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCD---AALDLAKGVDVMVHEATLDITM--EAKANSRGH  248 (305)
T ss_dssp             HHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEECCSCBSCS---THHHHHTTCSEEEEECCBCGGG--HHHHHHTTC
T ss_pred             hhhhcCcceEEEEeeceeeeeccccccccccceeecccccCCch---hHHHHhhccceeeeccccchhh--hhcccCCCC
Confidence            999998743 2211            223467899999999853   3445789999999999998877  678899999


Q ss_pred             CCchhHHHHHHHhcccccCCceEEEeccccCcCC
Q 020181          296 THLSEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT  329 (330)
Q Consensus       296 ~t~~~~~~~~l~~~~~~~~~~~~i~ltHfs~ry~  329 (330)
                      ++++|++..+ ++.+..     .+++||||+||.
T Consensus       249 ~t~~~~~~la-~~~~~k-----~lvltH~s~~~~  276 (305)
T d2cbna1         249 SSTRQAATLA-REAGVG-----KLIITHVSSRYD  276 (305)
T ss_dssp             CBHHHHHHHH-HHHTCS-----EEEEECBCTTCC
T ss_pred             CCHHHHHHHH-HHcCCC-----EEEEECCCcCCC
Confidence            9999887776 344433     679999999995

PyMOL of d2cbna1

>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}	Back information, alignment and structure

>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]}	Back information, alignment and structure

>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]}	Back information, alignment and structure

>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}	Back information, alignment and structure

>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}	Back information, alignment and structure

>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]}	Back information, alignment and structure

>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}	Back information, alignment and structure

>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}	Back information, alignment and structure

>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]}	Back information, alignment and structure

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}	Back information, alignment and structure