Citrus Sinensis ID: 020186
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | 2.2.26 [Sep-21-2011] | |||||||
| O04904 | 377 | Dihydroorotase, mitochond | yes | no | 0.960 | 0.838 | 0.813 | 1e-158 | |
| B1XI96 | 346 | Dihydroorotase OS=Synecho | yes | no | 0.951 | 0.904 | 0.625 | 1e-113 | |
| Q82WF3 | 349 | Dihydroorotase OS=Nitroso | yes | no | 0.966 | 0.911 | 0.609 | 1e-113 | |
| C1D672 | 345 | Dihydroorotase OS=Laribac | yes | no | 0.939 | 0.895 | 0.631 | 1e-111 | |
| Q8Y249 | 344 | Dihydroorotase OS=Ralston | yes | no | 0.951 | 0.909 | 0.609 | 1e-110 | |
| B2UFJ8 | 344 | Dihydroorotase OS=Ralston | yes | no | 0.951 | 0.909 | 0.612 | 1e-109 | |
| Q1LRD4 | 344 | Dihydroorotase OS=Ralston | yes | no | 0.957 | 0.915 | 0.602 | 1e-109 | |
| B2AH54 | 344 | Dihydroorotase OS=Cupriav | yes | no | 0.951 | 0.909 | 0.6 | 1e-109 | |
| Q0AFI1 | 345 | Dihydroorotase OS=Nitroso | yes | no | 0.966 | 0.921 | 0.594 | 1e-108 | |
| Q475T7 | 344 | Dihydroorotase OS=Cupriav | yes | no | 0.951 | 0.909 | 0.593 | 1e-107 |
| >sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial OS=Arabidopsis thaliana GN=PYR4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 257/316 (81%), Positives = 293/316 (92%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S S++ RAIVMPNLKPP+T+TAAA+ YR+ I+KALP+ S+F PLMTLYLTD T P+EI+L
Sbjct: 60 SASNFKRAIVMPNLKPPVTSTAAAIIYRKFIMKALPSESSFDPLMTLYLTDKTLPEEIRL 119
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR++GVV+AVKLYPAGATTNSQDGVTDLFGKC+ VLEEMV+QNMPLLVHGEVTDP +D+F
Sbjct: 120 ARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVKQNMPLLVHGEVTDPSIDVF 179
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREK+FI+T+LQPLIQRLPQLKVVMEHITTMDAV FVESCKEG V ATVTPQHL+LNRNA
Sbjct: 180 DREKIFIETVLQPLIQRLPQLKVVMEHITTMDAVNFVESCKEGSVGATVTPQHLLLNRNA 239
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHR+A+V AVTSGS+KFFLGTDSAPHER RKE +CGCAGIY
Sbjct: 240 LFQGGLQPHNYCLPVLKREIHREAIVKAVTSGSKKFFLGTDSAPHERSRKESSCGCAGIY 299
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+AP+ALSLYAKVF+E GALDKLEAFTSFNGPDFYGLPRN+SKI L K PWKVP+ F+F F
Sbjct: 300 SAPIALSLYAKVFDEAGALDKLEAFTSFNGPDFYGLPRNSSKITLKKSPWKVPDVFNFPF 359
Query: 311 GDIIPMFAGNTLEWQP 326
G+I+PMFAG TL+WQP
Sbjct: 360 GEIVPMFAGETLQWQP 375
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 3 |
| >sp|B1XI96|PYRC_SYNP2 Dihydroorotase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/315 (62%), Positives = 238/315 (75%), Gaps = 2/315 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+V + RAIVMPNLKPP+ T A A AY + IL A+P F PLMTLYLTD TSP EI+
Sbjct: 29 TVRQFARAIVMPNLKPPVRTVAEAAAYHDRILAAIPPGRTFEPLMTLYLTDNTSPAEIQA 88
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+++G V AVK YPAGATTNS GVTD+ KC V E M ++PLL+HGEVTD VD+F
Sbjct: 89 AKESGFVKAVKYYPAGATTNSDLGVTDI-RKCDAVFEAMQTVDLPLLLHGEVTDHRVDVF 147
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+T L+PL +R PQL++V+EHITT DAV+FV + E VAAT+TPQHL+ NRN+
Sbjct: 148 DREKVFIETYLRPLKERFPQLRIVLEHITTKDAVEFVLASDEK-VAATITPQHLLFNRNS 206
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
+FQGG+RPH YCLP+LKRE HR+A++ A TSG+ KFFLGTDSAPH R RKE CGCAG Y
Sbjct: 207 IFQGGIRPHFYCLPILKRETHREALLEAATSGNPKFFLGTDSAPHGRDRKESDCGCAGCY 266
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+A AL LYA VFE ALDKLE F SF GPDFY LPRNT KI LTK PW++P+A F
Sbjct: 267 SALHALELYATVFEAADALDKLEGFASFYGPDFYQLPRNTEKITLTKTPWQIPDALPFPE 326
Query: 311 GDIIPMFAGNTLEWQ 325
++P++AG L W+
Sbjct: 327 SSLVPLWAGQELSWK 341
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Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|Q82WF3|PYRC_NITEU Dihydroorotase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/323 (60%), Positives = 242/323 (74%), Gaps = 5/323 (1%)
Query: 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPA--SSNFTPLMTLYLTDT 62
++LP + + RAI+MPNLKPPI TT A AYR IL ALPA + F PLMTLYLTDT
Sbjct: 28 SVLP-DTARRFARAIIMPNLKPPIVTTEQAAAYRVRILSALPAELAGRFEPLMTLYLTDT 86
Query: 63 TSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEV 122
TSP+EI A+ +G+V +KLYPAGATT+S GVTD+ +C LE+M E +MPLLVHGEV
Sbjct: 87 TSPEEITRAQASGIVQGIKLYPAGATTHSDAGVTDI-ARCEATLEKMEELDMPLLVHGEV 145
Query: 123 TDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQ 182
DP VD+FDREK+FID +L PL+QR P L+VV EHITT +AV+FV++ +AAT+T
Sbjct: 146 VDPAVDVFDREKIFIDRVLTPLLQRFPGLRVVFEHITTREAVEFVQTAP-NRIAATITAH 204
Query: 183 HLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKEC 242
HL+LNRNALF GGLRPH+YCLPVLKREIHRQA++ A TSG +FFLGTDSAPH KE
Sbjct: 205 HLMLNRNALFTGGLRPHHYCLPVLKREIHRQALLEAATSGHSRFFLGTDSAPHPVRDKES 264
Query: 243 ACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKV 302
ACGCAGIY+A A+ YA+VFE+ G LD+LEAFTSF+GPDFYGLPRNT +I L + W++
Sbjct: 265 ACGCAGIYSAHAAIEFYAEVFEQAGRLDRLEAFTSFHGPDFYGLPRNTDRISLIRESWQI 324
Query: 303 PEAFSFSFGDIIPMFAGNTLEWQ 325
PE +IP+ AG W+
Sbjct: 325 PEQVELGEEKLIPLRAGEHARWK 347
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Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|C1D672|PYRC_LARHH Dihydroorotase OS=Laribacter hongkongensis (strain HLHK9) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/312 (63%), Positives = 231/312 (74%), Gaps = 3/312 (0%)
Query: 15 YGRAIVMPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARK 73
+ RAIVMPNLKPP+TT A AYRE IL ALP F PLMTLYLTD T P EI +
Sbjct: 33 FARAIVMPNLKPPVTTVVQAAAYRERILAALPPGGPAFEPLMTLYLTDNTPPAEIDRVAE 92
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
+G V A+KLYPAGATTNS GVT L G C+ L M E +PLLVHGEVTDP +D+FDRE
Sbjct: 93 SGFVHALKLYPAGATTNSDAGVTSLSG-CLPTLTRMAELGVPLLVHGEVTDPQIDVFDRE 151
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
VFIDT+LQPL+ LP L+VVMEHITT A +FV + + +AATVTPQH+++NRNALF
Sbjct: 152 AVFIDTVLQPLLAELPTLRVVMEHITTRQAAEFVLAAPDN-IAATVTPQHMLMNRNALFT 210
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GGLRPH+YCLPVLKRE HR A+ AVTSGS +FFLGTDSAPH R KE ACGCAGI++A
Sbjct: 211 GGLRPHHYCLPVLKREEHRAAIARAVTSGSTRFFLGTDSAPHARHAKEAACGCAGIFSAH 270
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL LYA+ FE+ GALD+LEAF SFNGPDFY LPRNT + L + W VP + + +
Sbjct: 271 AALPLYAEAFEDAGALDRLEAFASFNGPDFYRLPRNTGTVTLKREEWTVPASLPYGNDTL 330
Query: 314 IPMFAGNTLEWQ 325
+P+ AG TL WQ
Sbjct: 331 VPLRAGETLRWQ 342
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Laribacter hongkongensis (strain HLHK9) (taxid: 557598) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|Q8Y249|PYRC_RALSO Dihydroorotase OS=Ralstonia solanacearum (strain GMI1000) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/315 (60%), Positives = 229/315 (72%), Gaps = 2/315 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ +GRAI+MPNLKPP+TTTA A AYRE IL ALPA + F PLMTLYLTD T+P+E++
Sbjct: 30 TARQFGRAIIMPNLKPPVTTTAQARAYRERILAALPAGTRFEPLMTLYLTDNTTPEEVRA 89
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR +G V VKLYPAGATTNS GVTDL +C LE M + MPLLVHGEVTDP VDIF
Sbjct: 90 ARASGFVHGVKLYPAGATTNSDAGVTDLR-RCAKTLEAMQDVGMPLLVHGEVTDPTVDIF 148
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE VFIDT++QPL + P LKVV EHITT A ++V +G V AT+T HL+ NRNA
Sbjct: 149 DREAVFIDTVMQPLRRDFPALKVVFEHITTKHAAEYVRDA-QGPVGATITAHHLLYNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LF GG+RPH YCLPVLKRE HR A+V+A TSG +FFLGTDSAPH +G KE ACGCAG Y
Sbjct: 208 LFVGGIRPHYYCLPVLKRETHRLALVAAATSGHPRFFLGTDSAPHAKGLKEHACGCAGCY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
A A+ LYA+ FE+ ALDKLE F S +GPDFYGLPRN + LT+ W++P F
Sbjct: 268 TALHAMELYAEAFEDANALDKLEGFASLHGPDFYGLPRNAGTLTLTRSQWQLPAEVPFGE 327
Query: 311 GDIIPMFAGNTLEWQ 325
++P+ G L W+
Sbjct: 328 QMLVPLRGGEMLRWK 342
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Ralstonia solanacearum (strain GMI1000) (taxid: 267608) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|B2UFJ8|PYRC_RALPJ Dihydroorotase OS=Ralstonia pickettii (strain 12J) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/315 (61%), Positives = 227/315 (72%), Gaps = 2/315 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ +GRAI+MPNLKPP+TTTA A AYRE IL ALPA + F PLMTLYLTD TSP+ I+
Sbjct: 30 TARQFGRAIIMPNLKPPVTTTAQARAYRERILAALPAGTQFEPLMTLYLTDNTSPEVIRE 89
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR +G + VKLYPAGATTNS GVTDL +C LE M E MPLLVHGEVTDP VDIF
Sbjct: 90 ARASGFIHGVKLYPAGATTNSDAGVTDLR-RCAKTLEAMQEVGMPLLVHGEVTDPTVDIF 148
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE VFIDT++ PL + P LKVV EHITT A ++V EG V AT+T HL+ NRNA
Sbjct: 149 DREAVFIDTVMLPLRRDFPALKVVFEHITTKHAAEYVRDA-EGPVGATITAHHLLYNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LF GG+RPH YCLPVLKRE HR A+V+A TSG +FFLGTDSAPH +G KE ACGCAG Y
Sbjct: 208 LFVGGIRPHYYCLPVLKRETHRLALVAAATSGHPRFFLGTDSAPHAKGVKEHACGCAGCY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
A A+ LYA+ FE+ ALDKLE F S +GPDFYGLPRN + LT+ W++P F
Sbjct: 268 TALHAMELYAEAFEDANALDKLEGFASLHGPDFYGLPRNAGTLTLTRSQWQLPAEVPFGE 327
Query: 311 GDIIPMFAGNTLEWQ 325
++P+ G L W+
Sbjct: 328 QTLVPLRGGEMLRWK 342
|
Ralstonia pickettii (strain 12J) (taxid: 402626) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|Q1LRD4|PYRC_RALME Dihydroorotase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/317 (60%), Positives = 230/317 (72%), Gaps = 2/317 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ + RAI+MPNLKPP+TT A AYR IL ALPA F PLMTLYLTD T P+EI
Sbjct: 30 TARQFARAIIMPNLKPPVTTVDQASAYRARILAALPAGMAFEPLMTLYLTDNTPPEEIVA 89
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR +G V VKLYPAGATTNS GVTD+ +C LE M + +PLLVHGEVTD +DIF
Sbjct: 90 ARASGFVHGVKLYPAGATTNSDAGVTDIR-RCAATLEAMQREGVPLLVHGEVTDGDIDIF 148
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE VFID +++PL + P+LKVV EHITT DA ++V EG V AT+T HL+ NRNA
Sbjct: 149 DREAVFIDRVMKPLRRDFPELKVVFEHITTRDAAQYVAEA-EGPVGATITAHHLLYNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
+F GG+RPH YCLPVLKREIHR+A+V A TSGS +FFLGTDSAPH RG KE ACGCAG Y
Sbjct: 208 IFTGGIRPHYYCLPVLKREIHREALVKAATSGSPRFFLGTDSAPHARGLKEHACGCAGCY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
A A+ LYA+ F+ GALDKLEAF+SFNGP FYGLPRN+ + LT+ W++P +
Sbjct: 268 TALHAMELYAEAFDAAGALDKLEAFSSFNGPAFYGLPRNSGTLTLTREDWELPAELPYGD 327
Query: 311 GDIIPMFAGNTLEWQPS 327
++P+ AG TL W+ S
Sbjct: 328 TTLVPLRAGETLRWKAS 344
|
Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|B2AH54|PYRC_CUPTR Dihydroorotase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 226/315 (71%), Gaps = 2/315 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ + RAIVMPNLKPP+TT A A AYR IL ALPA F PLMTLYLTD T P+EI
Sbjct: 30 TARQFARAIVMPNLKPPVTTVAQAQAYRARILAALPAGMQFEPLMTLYLTDNTGPEEIAA 89
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR +G V VKLYPAGATTNS GVTD+ +C LE M +PLLVHGEVTDP +DIF
Sbjct: 90 ARASGFVHGVKLYPAGATTNSDAGVTDIR-RCYPALEAMQRAGLPLLVHGEVTDPAIDIF 148
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE VFI+ ++ PL + +P+LKVV EHITT DA ++V G V AT+T HL+ NRNA
Sbjct: 149 DREAVFIERVMTPLRRDMPELKVVFEHITTKDAAQYVRDAS-GPVGATITAHHLLYNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
+F GG+RPH YCLPVLKRE HR+A+V+A TSGS +FFLGTDSAPH RG KE ACGCAG Y
Sbjct: 208 IFTGGIRPHYYCLPVLKRETHREALVAAATSGSERFFLGTDSAPHARGLKEHACGCAGCY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
A A+ LYA+ F+ GALDKLEAF SFNGP FYGLPRNT + L + W++P +
Sbjct: 268 TALHAMELYAEAFDAAGALDKLEAFASFNGPAFYGLPRNTGTLTLEREDWELPAELPYGD 327
Query: 311 GDIIPMFAGNTLEWQ 325
++P+ G TL W+
Sbjct: 328 TTLVPLRGGETLRWK 342
|
Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|Q0AFI1|PYRC_NITEC Dihydroorotase OS=Nitrosomonas eutropha (strain C91) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 239/323 (73%), Gaps = 5/323 (1%)
Query: 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPAS--SNFTPLMTLYLTDT 62
++LP + + RA++MPNLK P+ TT A AYR IL ALP F PLMTLYLTDT
Sbjct: 25 SVLP-DTARRFARAMIMPNLKLPVVTTEQAAAYRARILSALPQELVGQFEPLMTLYLTDT 83
Query: 63 TSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEV 122
T+P+EI A+ +G+V AVKLYPAGATT+S GVTD+ +C L M + +MPLLVHGEV
Sbjct: 84 TTPEEISRAKASGIVQAVKLYPAGATTHSDAGVTDI-DRCKATLAMMEKLDMPLLVHGEV 142
Query: 123 TDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQ 182
DP VDIFDREK+FID +L PL+QR P L+VV EHITT +AV+FV+S +AAT+T
Sbjct: 143 VDPAVDIFDREKIFIDRVLIPLLQRFPGLRVVFEHITTREAVEFVQSISNR-IAATITAH 201
Query: 183 HLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKEC 242
HL+LNRNALF GGL+PH+YCLPVLKREIHRQA+V+A TSG +FFLGTDSAPH KE
Sbjct: 202 HLMLNRNALFTGGLQPHHYCLPVLKREIHRQALVAAATSGHSRFFLGTDSAPHPLKDKES 261
Query: 243 ACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKV 302
ACGCAGIY+A A+ YA++FE+ G LD+LEAF SF GPDFYGLPRNT +I L+K W++
Sbjct: 262 ACGCAGIYSAHAAIEFYAEIFEQAGRLDRLEAFASFYGPDFYGLPRNTDQISLSKESWQI 321
Query: 303 PEAFSFSFGDIIPMFAGNTLEWQ 325
P F ++P+ AG + W+
Sbjct: 322 PGEVEFGGDRLVPLRAGEQVCWR 344
|
Nitrosomonas eutropha (strain C91) (taxid: 335283) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
| >sp|Q475T7|PYRC_CUPPJ Dihydroorotase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=pyrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/315 (59%), Positives = 225/315 (71%), Gaps = 2/315 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ +GRAI+MPNLKPP+TT A AYR IL ALPA +F PLMTLYLTD T +EI
Sbjct: 30 TARQFGRAIIMPNLKPPVTTVEQAQAYRARILAALPAGMSFEPLMTLYLTDNTPAEEIVA 89
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+ +G V VKLYPAGATTNS GVTD+ +C LE M +PLLVHGEVTD +DIF
Sbjct: 90 AKASGFVHGVKLYPAGATTNSDAGVTDIR-RCAGALEAMQRVGLPLLVHGEVTDGDIDIF 148
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE VFID ++ PL + P+LKVV EHITT DA ++V G V AT+T HL+ NRNA
Sbjct: 149 DREAVFIDRVMTPLRRDFPELKVVFEHITTRDAAQYVRDAS-GPVGATITAHHLLYNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
+F GG+RPH YCLPVLKRE HR+A+V+A TSGS +FFLGTDSAPH RG KE ACGCAG Y
Sbjct: 208 IFTGGIRPHYYCLPVLKRETHREALVAAATSGSDRFFLGTDSAPHARGLKEHACGCAGCY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
A A+ LYA+ F+ GALDKLEAF SFNGP FYGLPRNT + L + W++P +
Sbjct: 268 TALHAMELYAEAFDAAGALDKLEAFASFNGPAFYGLPRNTGTLTLEREDWQLPAELPYGD 327
Query: 311 GDIIPMFAGNTLEWQ 325
++P+ AG TL W+
Sbjct: 328 ATLVPLRAGETLRWK 342
|
Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| 255553715 | 398 | Dihydroorotase, mitochondrial precursor, | 0.963 | 0.796 | 0.876 | 1e-166 | |
| 359485440 | 377 | PREDICTED: dihydroorotase, mitochondrial | 0.963 | 0.840 | 0.876 | 1e-165 | |
| 302143305 | 346 | unnamed protein product [Vitis vinifera] | 0.963 | 0.916 | 0.876 | 1e-165 | |
| 224095475 | 346 | predicted protein [Populus trichocarpa] | 0.969 | 0.921 | 0.871 | 1e-165 | |
| 363806922 | 346 | uncharacterized protein LOC100815210 [Gl | 0.957 | 0.910 | 0.850 | 1e-160 | |
| 357474373 | 346 | Dihydroorotase [Medicago truncatula] gi| | 0.969 | 0.921 | 0.830 | 1e-160 | |
| 297803826 | 378 | mitochondrial dihydroorotase [Arabidopsi | 0.960 | 0.835 | 0.835 | 1e-159 | |
| 146447410 | 374 | mitochondrial dihydroorotase [Brassica n | 0.948 | 0.834 | 0.846 | 1e-158 | |
| 146447408 | 349 | mitochondrial dihydroorotase [Vicia faba | 0.957 | 0.902 | 0.819 | 1e-158 | |
| 449494658 | 377 | PREDICTED: dihydroorotase, mitochondrial | 0.960 | 0.838 | 0.832 | 1e-157 |
| >gi|255553715|ref|XP_002517898.1| Dihydroorotase, mitochondrial precursor, putative [Ricinus communis] gi|223542880|gb|EEF44416.1| Dihydroorotase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 278/317 (87%), Positives = 300/317 (94%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S SH+GRAI+MPNLKPPITT AA+AYRESILKALPA+S+F+PLMTLYLTDTTSP+EIKL
Sbjct: 80 SASHFGRAIIMPNLKPPITTAVAALAYRESILKALPANSDFSPLMTLYLTDTTSPNEIKL 139
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR++GVVFAVKLYPAGATTNSQDGVTDLFGKC+ VLEEMVEQNMPLLVHGEVTDP VDIF
Sbjct: 140 ARRSGVVFAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVEQNMPLLVHGEVTDPSVDIF 199
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFIDT+LQPLIQ+LP+LKVVMEHITTMDAV+FV+SC EG VAATVTPQHLVLNRNA
Sbjct: 200 DREKVFIDTVLQPLIQKLPRLKVVMEHITTMDAVRFVQSCDEGSVAATVTPQHLVLNRNA 259
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
+FQGGL+PHNYCLPVLKRE HRQA+VSAVTSGS++FFLGTDSAPHER RKEC+CGCAGIY
Sbjct: 260 IFQGGLQPHNYCLPVLKRETHRQAIVSAVTSGSKRFFLGTDSAPHERKRKECSCGCAGIY 319
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
NAPVALSLYAK+FEE GALDKLEAFTSFNGPDFYGLPRN SKIKL K WKVPEAFSF F
Sbjct: 320 NAPVALSLYAKIFEEAGALDKLEAFTSFNGPDFYGLPRNASKIKLAKNQWKVPEAFSFPF 379
Query: 311 GDIIPMFAGNTLEWQPS 327
GDIIPM AG TLEWQPS
Sbjct: 380 GDIIPMSAGETLEWQPS 396
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485440|ref|XP_002274917.2| PREDICTED: dihydroorotase, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/317 (87%), Positives = 300/317 (94%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S SH+GR IVMPNLKPPITTTAAAVAYRESILKALPA+ +FTPLMTLYLTD TSP+EIKL
Sbjct: 59 SASHFGRGIVMPNLKPPITTTAAAVAYRESILKALPANCDFTPLMTLYLTDKTSPNEIKL 118
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR +GVVFAVKLYPAGATTNSQDGVTDLFGKC+ VLEEMVEQNMPLLVHGEVT+P VD+F
Sbjct: 119 ARNSGVVFAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVEQNMPLLVHGEVTNPEVDVF 178
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+T+L+PLIQ+ P+LKVVMEHITTMDAV+FVESC EG VAATVTPQHLVLNRN+
Sbjct: 179 DREKVFIETVLRPLIQKFPRLKVVMEHITTMDAVRFVESCNEGSVAATVTPQHLVLNRNS 238
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKRE HRQA+VSAVTSGSRKFFLGTDSAPHER RKEC CGCAGIY
Sbjct: 239 LFQGGLQPHNYCLPVLKRETHRQAIVSAVTSGSRKFFLGTDSAPHERRRKECPCGCAGIY 298
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
NAPVALSLYAKVFEE GALDKLEAFTSFNGPDFYGLPRNTSKIKL+K PWKVPE++SFSF
Sbjct: 299 NAPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNTSKIKLSKTPWKVPESYSFSF 358
Query: 311 GDIIPMFAGNTLEWQPS 327
GDI+PMFAG TL+W PS
Sbjct: 359 GDIVPMFAGETLDWLPS 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143305|emb|CBI21866.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/317 (87%), Positives = 300/317 (94%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S SH+GR IVMPNLKPPITTTAAAVAYRESILKALPA+ +FTPLMTLYLTD TSP+EIKL
Sbjct: 28 SASHFGRGIVMPNLKPPITTTAAAVAYRESILKALPANCDFTPLMTLYLTDKTSPNEIKL 87
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR +GVVFAVKLYPAGATTNSQDGVTDLFGKC+ VLEEMVEQNMPLLVHGEVT+P VD+F
Sbjct: 88 ARNSGVVFAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVEQNMPLLVHGEVTNPEVDVF 147
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+T+L+PLIQ+ P+LKVVMEHITTMDAV+FVESC EG VAATVTPQHLVLNRN+
Sbjct: 148 DREKVFIETVLRPLIQKFPRLKVVMEHITTMDAVRFVESCNEGSVAATVTPQHLVLNRNS 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKRE HRQA+VSAVTSGSRKFFLGTDSAPHER RKEC CGCAGIY
Sbjct: 208 LFQGGLQPHNYCLPVLKRETHRQAIVSAVTSGSRKFFLGTDSAPHERRRKECPCGCAGIY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
NAPVALSLYAKVFEE GALDKLEAFTSFNGPDFYGLPRNTSKIKL+K PWKVPE++SFSF
Sbjct: 268 NAPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNTSKIKLSKTPWKVPESYSFSF 327
Query: 311 GDIIPMFAGNTLEWQPS 327
GDI+PMFAG TL+W PS
Sbjct: 328 GDIVPMFAGETLDWLPS 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095475|ref|XP_002310399.1| predicted protein [Populus trichocarpa] gi|222853302|gb|EEE90849.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 278/319 (87%), Positives = 300/319 (94%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S + +GRAIVMPNLKPPIT+TA A AYRESILKALPA S+F+PLMTLYLTDTTSP EIKL
Sbjct: 28 SANFFGRAIVMPNLKPPITSTAVAAAYRESILKALPADSDFSPLMTLYLTDTTSPREIKL 87
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR++GVVFAVKLYPAGATTNSQDGVTDLFGKC+ VLEEM EQNMPLLVHGEVTDP VD+F
Sbjct: 88 ARESGVVFAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMAEQNMPLLVHGEVTDPNVDVF 147
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFIDTILQPLIQRLPQLKVVMEHITTM+AV+FVESC G VAATVTPQHL+LNRNA
Sbjct: 148 DREKVFIDTILQPLIQRLPQLKVVMEHITTMEAVRFVESCSYGSVAATVTPQHLLLNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
+FQGGL+PHNYCLPVLKREIHRQA+VSAVTSG++KFFLGTDSAPHE+ RKEC CGCAGIY
Sbjct: 208 IFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGNKKFFLGTDSAPHEKRRKECPCGCAGIY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
NAPVA+SLYAKVFEE GALDKLEAFTSFNGPDFYGLPRNTSKIKLT+ PWKVPE+FSFSF
Sbjct: 268 NAPVAISLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNTSKIKLTRTPWKVPESFSFSF 327
Query: 311 GDIIPMFAGNTLEWQPSLI 329
GDI+PM AG TLEWQPS I
Sbjct: 328 GDIVPMSAGETLEWQPSSI 346
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806922|ref|NP_001242305.1| uncharacterized protein LOC100815210 [Glycine max] gi|255636147|gb|ACU18416.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/315 (85%), Positives = 291/315 (92%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S H+GRAIVMPNLKPPITTT+AAVAYRESILKA+P SNFTPLM+LYLTD T+PDEIKL
Sbjct: 28 SAKHFGRAIVMPNLKPPITTTSAAVAYRESILKAIPKDSNFTPLMSLYLTDVTTPDEIKL 87
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+K+G+V+ VKLYPAGATTNSQDGVTDLFG C VLEEM EQN PLLVHGEVTD VDIF
Sbjct: 88 AKKSGLVYGVKLYPAGATTNSQDGVTDLFGNCFSVLEEMAEQNSPLLVHGEVTDSNVDIF 147
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+TIL PLIQRLPQLKVVMEHITT DAVKFVESCKEG+VAATVTPQHL+LNRNA
Sbjct: 148 DREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVESCKEGYVAATVTPQHLLLNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHRQA+VSAVTSGS++FFLGTDSAPH+R +KEC+CGCAGIY
Sbjct: 208 LFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFLGTDSAPHDRRKKECSCGCAGIY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
N+PVALSLYAKVFEE GALDKLEAFTSFNGPDFYGLPRN SKIKL K PWKVP+ SF F
Sbjct: 268 NSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKSKIKLRKAPWKVPDYLSFPF 327
Query: 311 GDIIPMFAGNTLEWQ 325
GDI+PMFAG TLEW+
Sbjct: 328 GDIVPMFAGETLEWE 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474373|ref|XP_003607471.1| Dihydroorotase [Medicago truncatula] gi|355508526|gb|AES89668.1| Dihydroorotase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/319 (83%), Positives = 296/319 (92%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S H+GRAI+MPNLKPPITTT++A++YRESILKA+P +SNFTPLMTLYLTD T+P+EI+L
Sbjct: 28 SAKHFGRAIIMPNLKPPITTTSSAISYRESILKAIPKTSNFTPLMTLYLTDATTPNEIQL 87
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+K+G V+ VKLYPAGATTNSQDGVTDLFG C VLEEMVEQ +PLLVHGEVT+P VDIF
Sbjct: 88 AKKSGFVYGVKLYPAGATTNSQDGVTDLFGNCYSVLEEMVEQGLPLLVHGEVTNPEVDIF 147
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+TIL+PLIQRLPQLKVVMEHITTMDAVKFVESCKEG+VAATVTPQH++LNRNA
Sbjct: 148 DREKVFIETILEPLIQRLPQLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHILLNRNA 207
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHRQA+VSA+TSGSR+FFLGTDSAPH+R +KE ACGCAGIY
Sbjct: 208 LFQGGLQPHNYCLPVLKREIHRQAIVSAITSGSRRFFLGTDSAPHDRRKKESACGCAGIY 267
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
N+PVALSLYAKVFEE GALDKLEAFTSFNGPDFYG+PRN SKIKL K PW+VPE SF F
Sbjct: 268 NSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGIPRNKSKIKLRKSPWRVPECLSFPF 327
Query: 311 GDIIPMFAGNTLEWQPSLI 329
GDIIPMFAG TLEW+ LI
Sbjct: 328 GDIIPMFAGETLEWEALLI 346
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803826|ref|XP_002869797.1| mitochondrial dihydroorotase [Arabidopsis lyrata subsp. lyrata] gi|297315633|gb|EFH46056.1| mitochondrial dihydroorotase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/316 (83%), Positives = 294/316 (93%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S S + RAIVMPNLKPP+TTTAAAVAYR+SI+KALP S+F PLMTLYLTD T PDEIKL
Sbjct: 61 SASIFKRAIVMPNLKPPVTTTAAAVAYRDSIMKALPYGSSFDPLMTLYLTDKTQPDEIKL 120
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR++GVV+AVKLYPAGATTNSQDGVTDLFGKC+ VLEEMV+QNMPLLVHGEVTDP +D+F
Sbjct: 121 ARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVKQNMPLLVHGEVTDPSIDVF 180
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREK+FI+T+LQPLIQRLPQLKVVMEHITTMDAV FVESCKEG V ATVTPQHL+LNRNA
Sbjct: 181 DREKIFIETVLQPLIQRLPQLKVVMEHITTMDAVNFVESCKEGSVGATVTPQHLLLNRNA 240
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHR+A+V AVTSGS+KFFLGTDSAPHER RKE +CGCAGIY
Sbjct: 241 LFQGGLQPHNYCLPVLKREIHREAIVKAVTSGSKKFFLGTDSAPHERTRKESSCGCAGIY 300
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+APVALSLYAKVF+E GALDKLEAFTSFNGPDFYGLPRN+SK+ L K PWKVP+ F+FSF
Sbjct: 301 SAPVALSLYAKVFDEAGALDKLEAFTSFNGPDFYGLPRNSSKVTLKKSPWKVPDVFNFSF 360
Query: 311 GDIIPMFAGNTLEWQP 326
G+I+PMFAG TL+WQP
Sbjct: 361 GEIVPMFAGETLQWQP 376
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|146447410|gb|ABQ41358.1| mitochondrial dihydroorotase [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/312 (84%), Positives = 291/312 (93%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
SVSH+ RAIVMPNLKPP+T+TAAA+ YRESI+KALP S+F PLMTLYLTD T PDEIKL
Sbjct: 63 SVSHFRRAIVMPNLKPPVTSTAAAITYRESIMKALPTGSSFDPLMTLYLTDKTHPDEIKL 122
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR++GVV+AVKLYPAGATTNSQDGVTDLFGKC+ VLEEMV+QNMPLLVHGEVTDP +D+F
Sbjct: 123 ARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVKQNMPLLVHGEVTDPSIDVF 182
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREK+FI+T+LQPLIQRLPQLKVVMEHITTMDAV FVESCKEGFV ATVTPQHL+LNRNA
Sbjct: 183 DREKIFIETVLQPLIQRLPQLKVVMEHITTMDAVNFVESCKEGFVGATVTPQHLLLNRNA 242
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHR+A+V AVTSGS+KFFLGTDSAPHER RKE +CGCAGIY
Sbjct: 243 LFQGGLQPHNYCLPVLKREIHREAIVKAVTSGSKKFFLGTDSAPHERRRKESSCGCAGIY 302
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+APVALSLYAKVF+E G+LDKLEAFTSFNGPDFYGLPRN+SKI L K PWKVPE SFSF
Sbjct: 303 SAPVALSLYAKVFDEAGSLDKLEAFTSFNGPDFYGLPRNSSKITLKKAPWKVPEVLSFSF 362
Query: 311 GDIIPMFAGNTL 322
G+IIPMFAG TL
Sbjct: 363 GEIIPMFAGETL 374
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|146447408|gb|ABQ41357.1| mitochondrial dihydroorotase [Vicia faba] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 258/315 (81%), Positives = 291/315 (92%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S H+GRAI+MPNLKPPITTT++ ++YRESILKA+P +SNF PLMTLYLTDTT+P EI++
Sbjct: 31 SAKHFGRAIIMPNLKPPITTTSSTISYRESILKAIPKTSNFNPLMTLYLTDTTTPHEIQI 90
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+K+G V+ +KLYPAGATTNSQDGVTDLFG C VLEEMVEQ +PLLVHGEVT+P VD+F
Sbjct: 91 AKKSGFVYGIKLYPAGATTNSQDGVTDLFGNCYSVLEEMVEQGLPLLVHGEVTNPEVDVF 150
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+TIL+PLIQRLPQLKVVMEHITTMDAVKFVESCKEG+VAATVTPQH++LNRNA
Sbjct: 151 DREKVFIETILEPLIQRLPQLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHILLNRNA 210
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHRQ +VSA+TSGS++FFLGTDSAPH+R KECACGCAGIY
Sbjct: 211 LFQGGLQPHNYCLPVLKREIHRQTIVSAITSGSKRFFLGTDSAPHDRRNKECACGCAGIY 270
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
N+PVALSLYAKVFEE GAL+KLEAFTSFNGPDFYG+PRN SKIKL K PWKVPE SF F
Sbjct: 271 NSPVALSLYAKVFEEAGALNKLEAFTSFNGPDFYGIPRNKSKIKLRKSPWKVPECLSFPF 330
Query: 311 GDIIPMFAGNTLEWQ 325
GDIIPMFAG TLEW+
Sbjct: 331 GDIIPMFAGETLEWE 345
|
Source: Vicia faba Species: Vicia faba Genus: Vicia Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449494658|ref|XP_004159611.1| PREDICTED: dihydroorotase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/316 (83%), Positives = 294/316 (93%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S S +GRAIVMPNLKPP+TTTAAAVAYR+SILKALP++SNF PLMTLYLTDT SP+EIKL
Sbjct: 59 SASTFGRAIVMPNLKPPVTTTAAAVAYRDSILKALPSNSNFVPLMTLYLTDTMSPNEIKL 118
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
ARK+G V+AVKLYPAGATTNSQDGVTDLFGKC+ VLEEMVEQ+MPLLVHGEVT+ VD+F
Sbjct: 119 ARKSGAVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVEQDMPLLVHGEVTNSDVDMF 178
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFI+T+L+PLI+RLP+LKVVMEHITT DA KFV SC+ +AATVTPQHL+LNRN+
Sbjct: 179 DREKVFIETVLKPLIERLPKLKVVMEHITTADAAKFVLSCEHALLAATVTPQHLLLNRNS 238
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKRE HRQA+VSAVTSGS+KFFLGTDSAPHER RKE +CGCAGIY
Sbjct: 239 LFQGGLQPHNYCLPVLKRETHRQAIVSAVTSGSKKFFLGTDSAPHERKRKESSCGCAGIY 298
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+AP+ALSLYAKVFEE GALDKLEAFTSFNGPDFYGLPRNTSKI L K PW+VP++FSFSF
Sbjct: 299 SAPIALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNTSKITLQKAPWQVPKSFSFSF 358
Query: 311 GDIIPMFAGNTLEWQP 326
GDI+PMFAG TLEWQP
Sbjct: 359 GDIVPMFAGETLEWQP 374
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| TAIR|locus:2127168 | 377 | PYR4 "pyrimidin 4" [Arabidopsi | 0.960 | 0.838 | 0.778 | 1.8e-135 | |
| UNIPROTKB|Q9KL24 | 342 | pyrC "Dihydroorotase" [Vibrio | 0.939 | 0.903 | 0.577 | 1e-91 | |
| TIGR_CMR|VC_A0925 | 342 | VC_A0925 "dihydroorotase" [Vib | 0.939 | 0.903 | 0.577 | 1e-91 | |
| TIGR_CMR|SO_3695 | 343 | SO_3695 "dihydroorotase, homod | 0.945 | 0.906 | 0.563 | 3.5e-91 | |
| TIGR_CMR|CPS_2613 | 355 | CPS_2613 "dihydroorotase, homo | 0.954 | 0.884 | 0.537 | 1.1e-85 | |
| UNIPROTKB|P05020 | 348 | pyrC "PyrC" [Escherichia coli | 0.963 | 0.910 | 0.543 | 1.4e-85 | |
| TIGR_CMR|CBU_1703 | 351 | CBU_1703 "dihydroorotase, homo | 0.942 | 0.883 | 0.525 | 1.3e-82 | |
| TIGR_CMR|SPO_2653 | 346 | SPO_2653 "dihydroorotase, homo | 0.963 | 0.916 | 0.526 | 4.5e-82 | |
| POMBASE|SPAC16.03c | 337 | ura2 "dihydroorotase Ura2 (pre | 0.936 | 0.913 | 0.383 | 9.1e-45 | |
| TIGR_CMR|CJE_0309 | 331 | CJE_0309 "dihydroorotase, homo | 0.911 | 0.906 | 0.367 | 3.1e-44 |
| TAIR|locus:2127168 PYR4 "pyrimidin 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 246/316 (77%), Positives = 281/316 (88%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S S++ RAIVMPNLKPP+T+TAAA+ YR+ I+KALP+ S+F PLMTLYLTD T P+EI+L
Sbjct: 60 SASNFKRAIVMPNLKPPVTSTAAAIIYRKFIMKALPSESSFDPLMTLYLTDKTLPEEIRL 119
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
AR++GVV+AVKLYPAGATTNSQDGVTDLFGKC+ VLEEMV+QNMPLLVHGEVTDP +D+F
Sbjct: 120 ARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVKQNMPLLVHGEVTDPSIDVF 179
Query: 131 DREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREK+FI+T KVVMEHITTMDAV FVESCKEG V ATVTPQHL+LNRNA
Sbjct: 180 DREKIFIETVLQPLIQRLPQLKVVMEHITTMDAVNFVESCKEGSVGATVTPQHLLLNRNA 239
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHR+A+V AVTSGS+KFFLGTDSAPHER RKE +CGCAGIY
Sbjct: 240 LFQGGLQPHNYCLPVLKREIHREAIVKAVTSGSKKFFLGTDSAPHERSRKESSCGCAGIY 299
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+AP+ALSLYAKVF+E GALDKLEAFTSFNGPDFYGLPRN+SKI L K PWKVP+ F+F F
Sbjct: 300 SAPIALSLYAKVFDEAGALDKLEAFTSFNGPDFYGLPRNSSKITLKKSPWKVPDVFNFPF 359
Query: 311 GDIIPMFAGNTLEWQP 326
G+I+PMFAG TL+WQP
Sbjct: 360 GEIVPMFAGETLQWQP 375
|
|
| UNIPROTKB|Q9KL24 pyrC "Dihydroorotase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 182/315 (57%), Positives = 221/315 (70%)
Query: 12 VSHY-GRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+S Y GRA++MPN PP+TTT A+AYRE I+ A P ++F PLM LYLTD TSP+EI+
Sbjct: 29 ISRYNGRALIMPNTVPPVTTTEMALAYRERIMAAQP-QAHFEPLMALYLTDNTSPEEIRK 87
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH-VLEEMVEQNMPLLVHGEVTDPIVDI 129
A+ +G V A KLYPAGATTNS GVT K ++ VL+ M E M LLVHGEVT VDI
Sbjct: 88 AKASGKVVAAKLYPAGATTNSDSGVTS--AKNIYPVLQAMQEVGMLLLVHGEVTTHEVDI 145
Query: 130 FDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRN 189
FDREK F+DT K+V+EHITT DAV FV+ + VAAT+T HL+ NRN
Sbjct: 146 FDREKTFLDTVLAPIVNDFPQLKIVLEHITTADAVTFVQQAGDN-VAATITAHHLLFNRN 204
Query: 190 ALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249
+ GG+RPH YCLP+LKR H+ A+V+A TSGS+KFFLGTDSAPH +GRKE ACGCAG
Sbjct: 205 HMLVGGIRPHFYCLPILKRATHQHALVAAATSGSKKFFLGTDSAPHAKGRKEAACGCAGS 264
Query: 250 YNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFS 309
Y A AL LYA+VFE+ G L+ LEAF SFNGPDFYGLPRN + LTK W V E+ F
Sbjct: 265 YTAHAALELYAEVFEKEGKLENLEAFASFNGPDFYGLPRNQETVTLTKQAWPVAESMPFG 324
Query: 310 FGDIIPMFAGNTLEW 324
++P+ AG +EW
Sbjct: 325 SDIVVPIRAGENIEW 339
|
|
| TIGR_CMR|VC_A0925 VC_A0925 "dihydroorotase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 182/315 (57%), Positives = 221/315 (70%)
Query: 12 VSHY-GRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+S Y GRA++MPN PP+TTT A+AYRE I+ A P ++F PLM LYLTD TSP+EI+
Sbjct: 29 ISRYNGRALIMPNTVPPVTTTEMALAYRERIMAAQP-QAHFEPLMALYLTDNTSPEEIRK 87
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH-VLEEMVEQNMPLLVHGEVTDPIVDI 129
A+ +G V A KLYPAGATTNS GVT K ++ VL+ M E M LLVHGEVT VDI
Sbjct: 88 AKASGKVVAAKLYPAGATTNSDSGVTS--AKNIYPVLQAMQEVGMLLLVHGEVTTHEVDI 145
Query: 130 FDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRN 189
FDREK F+DT K+V+EHITT DAV FV+ + VAAT+T HL+ NRN
Sbjct: 146 FDREKTFLDTVLAPIVNDFPQLKIVLEHITTADAVTFVQQAGDN-VAATITAHHLLFNRN 204
Query: 190 ALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249
+ GG+RPH YCLP+LKR H+ A+V+A TSGS+KFFLGTDSAPH +GRKE ACGCAG
Sbjct: 205 HMLVGGIRPHFYCLPILKRATHQHALVAAATSGSKKFFLGTDSAPHAKGRKEAACGCAGS 264
Query: 250 YNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFS 309
Y A AL LYA+VFE+ G L+ LEAF SFNGPDFYGLPRN + LTK W V E+ F
Sbjct: 265 YTAHAALELYAEVFEKEGKLENLEAFASFNGPDFYGLPRNQETVTLTKQAWPVAESMPFG 324
Query: 310 FGDIIPMFAGNTLEW 324
++P+ AG +EW
Sbjct: 325 SDIVVPIRAGENIEW 339
|
|
| TIGR_CMR|SO_3695 SO_3695 "dihydroorotase, homodimeric type" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 178/316 (56%), Positives = 218/316 (68%)
Query: 12 VSHY-GRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+S Y GRAIVMPNL PP T A+AY + I +PA S F PLM LYLTD TSPDEI+
Sbjct: 29 ISRYMGRAIVMPNLVPPAIDTETALAYYDRIKARVPAGSQFEPLMVLYLTDKTSPDEIRK 88
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH-VLEEMVEQNMPLLVHGEVTDPIVDI 129
A+ +G VFA KLYPAGATTNS GVTDL K ++ LE M E M LVHGEVTD +DI
Sbjct: 89 AKASGKVFAAKLYPAGATTNSDSGVTDL--KNIYPALEAMQEVGMLFLVHGEVTDSSIDI 146
Query: 130 FDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRN 189
FDRE+VFI+ K+V+EHITT DAV FV + VAAT+T HL+ NRN
Sbjct: 147 FDRERVFIENILSKIVTDFPNLKIVLEHITTKDAVDFVTQASDN-VAATITAHHLLYNRN 205
Query: 190 ALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249
+ GG+RPH YCLP+LKR H+QA+++A SG++KFFLGTDSAPH + RKE ACGCAG
Sbjct: 206 HMLAGGIRPHFYCLPILKRNTHQQALLAAAASGNKKFFLGTDSAPHAKDRKEAACGCAGS 265
Query: 250 YNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFS 309
Y A A+ LYA+ FE + ALDKLEAF SFNGPDFY LPRN+ I L K W +P ++
Sbjct: 266 YTAHAAIELYAEAFESVNALDKLEAFASFNGPDFYNLPRNSDTITLVKKAWDIPASYPLG 325
Query: 310 FGDIIPMFAGNTLEWQ 325
+++P+ AG ++WQ
Sbjct: 326 DTNVVPIRAGEQIDWQ 341
|
|
| TIGR_CMR|CPS_2613 CPS_2613 "dihydroorotase, homodimeric type" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 171/318 (53%), Positives = 216/318 (67%)
Query: 9 ICSVSHY-GRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDE 67
+ +S Y GRAIVMPNL PP+T A A +Y + I+ A P S++F PLM LYLTD TS +
Sbjct: 38 VADISRYFGRAIVMPNLVPPVTDAALAESYYQRIMAAAP-SAHFKPLMVLYLTDNTSAQD 96
Query: 68 IKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV 127
I A+++G+V+A KLYPAGATTNS GVTD+ V M MPLLVHGEVT +
Sbjct: 97 IIEAKESGLVYAAKLYPAGATTNSSSGVTDV-ANLTDVFAAMQSVEMPLLVHGEVTAADI 155
Query: 128 DIFDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLN 187
DIFDRE+VF+DT KVV+EHITT +AV FV++ + V AT+T HL+ N
Sbjct: 156 DIFDREQVFVDTILKPLVANFPDLKVVLEHITTKNAVDFVKTAGDN-VGATITVHHLLFN 214
Query: 188 RNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247
RN + GG+RPH +CLP+LKR H+QA++ A TSG +KFFLGTDSAPH + KE ACGCA
Sbjct: 215 RNHMLVGGIRPHFFCLPILKRNTHQQALIEAATSGDKKFFLGTDSAPHAQHAKESACGCA 274
Query: 248 GIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFS 307
G+Y+A A+ LYA+VFE+ ALDKLEAF S NG +FY LP +T KI L K WKVP S
Sbjct: 275 GVYSAHAAIELYAEVFEQENALDKLEAFASLNGANFYQLPISTDKITLVKKAWKVPATMS 334
Query: 308 FSFGDIIPMFAGNTLEWQ 325
F ++P+ A + WQ
Sbjct: 335 FGDDVVVPVRADEEILWQ 352
|
|
| UNIPROTKB|P05020 pyrC "PyrC" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 174/320 (54%), Positives = 212/320 (66%)
Query: 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTS 64
T++P S YGRAIVMPNL PP+TT AAVAYR+ IL A+PA +FTPLMT YLTD+
Sbjct: 28 TVVPYTS-EIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLD 86
Query: 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTD 124
P+E++ GV A KLYPA ATTNS GVT + + VLE M + MPLLVHGEVT
Sbjct: 87 PNELERGFNEGVFTAAKLYPANATTNSSHGVTSI-DAIMPVLERMEKIGMPLLVHGEVTH 145
Query: 125 PIVDIFDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHL 184
+DIFDRE FI++ KVV EHITT DA +V E +AAT+TPQHL
Sbjct: 146 ADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDGNER-LAATITPQHL 204
Query: 185 VLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECAC 244
+ NRN + GG+RPH YCLP+LKR IH+QA+ V SG + FLGTDSAPH R RKE +C
Sbjct: 205 MFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSC 264
Query: 245 GCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPE 304
GCAG +NAP AL YA VFEEM AL EAF S NGP FYGLP N + I+L + +V E
Sbjct: 265 GCAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAE 324
Query: 305 AFSFSFGDIIPMFAGNTLEW 324
+ + + ++P AG T+ W
Sbjct: 325 SIALTDDTLVPFLAGETVRW 344
|
|
| TIGR_CMR|CBU_1703 CBU_1703 "dihydroorotase, homodimeric type" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 165/314 (52%), Positives = 211/314 (67%)
Query: 13 SHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLAR 72
+ + RAIVMPNL PPITT A AY + I +P SSNF PLMTLYLT++T EIK A+
Sbjct: 34 AQFNRAIVMPNLVPPITTVQQAKAYYDRIKAHVPKSSNFEPLMTLYLTESTPQQEIKAAQ 93
Query: 73 KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVH-VLEEMVEQNMPLLVHGEVTDPIVDIFD 131
++G++ A KLYPAGATT+SQ GV DL K ++ +LE M ++PLL+HGEV D VDIFD
Sbjct: 94 QSGIIVACKLYPAGATTHSQAGVKDL--KAIYTLLETMQSVDLPLLIHGEVVDYAVDIFD 151
Query: 132 REKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNAL 191
RE VFI+ ++V EHI+T AV FV + AT+TP HL+ NRN L
Sbjct: 152 REAVFIERELLPLVETFPQLRIVFEHISTKIAVDFVLEAPSK-LGATITPHHLLFNRNDL 210
Query: 192 FQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYN 251
G +RPH YCLP+LK + A++ A TSG+ KFFLGTDSAPH + +K+ CG AGIYN
Sbjct: 211 LSGSIRPHYYCLPILKTSEDQMALIQAATSGNPKFFLGTDSAPHSQTKKQSICGSAGIYN 270
Query: 252 APVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFG 311
AP A++LYA++F ALDKLE F S G +FYGLP N S+I L PW+V E+ F
Sbjct: 271 APAAIALYAEIFASQNALDKLEGFASRFGAEFYGLPLNNSQITLIHQPWQVAESLPFGNE 330
Query: 312 DIIPMFAGNTLEWQ 325
++P+FAG TL+WQ
Sbjct: 331 LVVPLFAGQTLQWQ 344
|
|
| TIGR_CMR|SPO_2653 SPO_2653 "dihydroorotase, homodimeric type" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 169/321 (52%), Positives = 205/321 (63%)
Query: 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSP 65
+LP + H+ RAIVMPNL PP+ T A A AYR+ IL LP NF PLMTLYLT+ T P
Sbjct: 26 VLPE-TARHFARAIVMPNLVPPVVTGAQAAAYRDRILATLPKGMNFEPLMTLYLTEQTDP 84
Query: 66 DEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDP 125
D++ A +G++ +VKLYPAGATTNS GV D F K VLE M E PL VHGEVTD
Sbjct: 85 DDLAAAHTSGLITSVKLYPAGATTNSASGVKD-FDKVRPVLERMAEIGCPLCVHGEVTDR 143
Query: 126 IVDIFDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLV 185
+DIFDRE VFID +V+MEHITT D +V + EG + AT+T QHL+
Sbjct: 144 EIDIFDREAVFIDRVLDPIRRATPGLRVIMEHITTKDGADYVAANPEG-LGATITVQHLM 202
Query: 186 LNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACG 245
+RN + GG+RPH YCLP+LKR HR+A+V+A TSG ++FLGTDSAPH KE C
Sbjct: 203 FDRNDMLVGGMRPHYYCLPILKRRHHREALVAAATSGDARYFLGTDSAPHPTHAKEAECC 262
Query: 246 CAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKI-PWKVPE 304
AG + AP+ALS A VFEE GALDKLE FTS NGP FYGLP N I L+K P +P+
Sbjct: 263 AAGCFTAPIALSCLAHVFEEAGALDKLEGFTSLNGPAFYGLPVNADTITLSKADPLDIPK 322
Query: 305 AFSFSFGDIIPMFAGNTLEWQ 325
+ G L W+
Sbjct: 323 TLPAGEHTVTVFDPGVPLHWR 343
|
|
| POMBASE|SPAC16.03c ura2 "dihydroorotase Ura2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 125/326 (38%), Positives = 173/326 (53%)
Query: 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSP 65
++P + A VMPNL PPITT A + Y++ I + S T LM+LYL+ T+P
Sbjct: 24 VVPTVAEGGVSVAYVMPNLIPPITTVDACLQYKKEIEQL---DSKTTYLMSLYLSPETTP 80
Query: 66 DEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDP 125
+ I A K G+ VK YP GATTNS+ GV + + M E M L +HGEV P
Sbjct: 81 EVIYEAAKKGIR-GVKSYPKGATTNSESGV-ESYEPFYPTFAAMQETGMILNIHGEVP-P 137
Query: 126 IVD--IFDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQH 183
D +F E F+ T K+V+EH TT DAV+ V++C E VA T+T H
Sbjct: 138 SKDNTVFTAEPKFLPTLLDLHQRFPKL-KIVLEHCTTADAVEAVKACGES-VAGTITAHH 195
Query: 184 LVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECA 243
L L + +Q P+ +C PV K E R+A++ A TS + KFF G+DSAPH R K
Sbjct: 196 LYLTQKD-WQDD--PYCFCKPVAKTERDRRALIEAATSKNPKFFFGSDSAPHPRSSKLKT 252
Query: 244 CGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRN--TSKIKLTKIPWK 301
AG++ P A S A+VF++ G LD L+ F G FY +P + S I L K ++
Sbjct: 253 PPAAGVFTQPFAASYLAEVFDKEGRLDALKDFACIFGRKFYCIPLDFKESNIVLKKESFR 312
Query: 302 VPEAFSFSFGDIIPMFAGNTLEWQPS 327
VPE+ + D++P L+W S
Sbjct: 313 VPESVA---NDLVPFHPNEVLQWHCS 335
|
|
| TIGR_CMR|CJE_0309 CJE_0309 "dihydroorotase, homodimeric type" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 117/318 (36%), Positives = 166/318 (52%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S + ++MPNL P+T AY+E ILKA + +FTPLMTL+ D DE L
Sbjct: 26 SAKDFKAGVIMPNLITPLTEIDVLKAYKERILKACK-NEDFTPLMTLFFKDY---DEQFL 81
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDL-FGKCVHVLEEMVEQNMPLLVHGEVTDPIVDI 129
+ +FA+KLYPAG TTNS +G++ K L M E N+PLLVHGE D ++D
Sbjct: 82 EKAKDELFAIKLYPAGITTNSDNGISSFDIEKLKPTLITMSELNIPLLVHGETNDFVMD- 140
Query: 130 FDREKVFIDTXXXXXXXXXXXXKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRN 189
RE F K+VMEHITT ++ + + AT+T HL++ +
Sbjct: 141 --REANFAKIYEKLAKNFPKL-KIVMEHITTKVLCDLLKDYENLY--ATITLHHLMITLD 195
Query: 190 ALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA-G 248
+ G + PH +C P+ KR + A+ SG K G+DSAPH KEC CGCA G
Sbjct: 196 DVVGGKMDPHLFCKPIAKRYEDKDALCGLAFSGYEKAMFGSDSAPHPLHTKEC-CGCAAG 254
Query: 249 IYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKI-KLTKIPWKVPEAFS 307
+++APV L + ++FE+ L+ F S N + L KI L K W+V +
Sbjct: 255 VFSAPVILPVLVELFEKYSNETNLQKFISDNACKIHNLKFENDKIITLEKQEWQVAQ--- 311
Query: 308 FSFGDIIPMFAGNTLEWQ 325
+GD++P AG TL ++
Sbjct: 312 -KYGDVVPFMAGKTLNFK 328
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2AH54 | PYRC_CUPTR | 3, ., 5, ., 2, ., 3 | 0.6 | 0.9513 | 0.9098 | yes | no |
| Q9K0D1 | PYRC_NEIMB | 3, ., 5, ., 2, ., 3 | 0.5714 | 0.9452 | 0.9040 | yes | no |
| Q0AFI1 | PYRC_NITEC | 3, ., 5, ., 2, ., 3 | 0.5944 | 0.9665 | 0.9217 | yes | no |
| Q0HRV9 | PYRC_SHESR | 3, ., 5, ., 2, ., 3 | 0.5642 | 0.9544 | 0.9154 | yes | no |
| Q82WF3 | PYRC_NITEU | 3, ., 5, ., 2, ., 3 | 0.6099 | 0.9665 | 0.9111 | yes | no |
| Q1LRD4 | PYRC_RALME | 3, ., 5, ., 2, ., 3 | 0.6025 | 0.9574 | 0.9156 | yes | no |
| A1SX20 | PYRC_PSYIN | 3, ., 5, ., 2, ., 3 | 0.5641 | 0.9392 | 0.9008 | yes | no |
| Q12NL3 | PYRC_SHEDO | 3, ., 5, ., 2, ., 3 | 0.5817 | 0.9574 | 0.9156 | yes | no |
| P74438 | PYRC_SYNY3 | 3, ., 5, ., 2, ., 3 | 0.5873 | 0.9483 | 0.9122 | N/A | no |
| Q9JVD6 | PYRC_NEIMA | 3, ., 5, ., 2, ., 3 | 0.5714 | 0.9452 | 0.9040 | yes | no |
| Q2SCE3 | PYRC_HAHCH | 3, ., 5, ., 2, ., 3 | 0.5650 | 0.9513 | 0.9072 | yes | no |
| B0JQJ1 | PYRC_MICAN | 3, ., 5, ., 2, ., 3 | 0.6 | 0.9513 | 0.9098 | yes | no |
| B4RJT2 | PYRC_NEIG2 | 3, ., 5, ., 2, ., 3 | 0.5650 | 0.9452 | 0.9040 | yes | no |
| B1XWS5 | PYRC_LEPCP | 3, ., 5, ., 2, ., 3 | 0.5904 | 0.9483 | 0.9069 | yes | no |
| P72170 | PYRC_PSEAE | 3, ., 5, ., 2, ., 3 | 0.5723 | 0.9392 | 0.8879 | yes | no |
| A7N655 | PYRC_VIBHB | 3, ., 5, ., 2, ., 3 | 0.5628 | 0.9544 | 0.9181 | yes | no |
| A4Y9S5 | PYRC_SHEPC | 3, ., 5, ., 2, ., 3 | 0.5611 | 0.9544 | 0.9154 | yes | no |
| O04904 | PYRC_ARATH | 3, ., 5, ., 2, ., 3 | 0.8132 | 0.9604 | 0.8381 | yes | no |
| A0L0B8 | PYRC_SHESA | 3, ., 5, ., 2, ., 3 | 0.5642 | 0.9544 | 0.9154 | yes | no |
| Q5F9Y1 | PYRC_NEIG1 | 3, ., 5, ., 2, ., 3 | 0.5682 | 0.9452 | 0.9040 | yes | no |
| B0CF78 | PYRC_ACAM1 | 3, ., 5, ., 2, ., 3 | 0.5841 | 0.9513 | 0.9072 | yes | no |
| B1XI96 | PYRC_SYNP2 | 3, ., 5, ., 2, ., 3 | 0.6253 | 0.9513 | 0.9046 | yes | no |
| B7UVV3 | PYRC_PSEA8 | 3, ., 5, ., 2, ., 3 | 0.5723 | 0.9392 | 0.8879 | yes | no |
| A4XS41 | PYRC_PSEMY | 3, ., 5, ., 2, ., 3 | 0.5723 | 0.9392 | 0.8879 | yes | no |
| A1RGK8 | PYRC_SHESW | 3, ., 5, ., 2, ., 3 | 0.5579 | 0.9544 | 0.9154 | yes | no |
| Q0AB36 | PYRC_ALHEH | 3, ., 5, ., 2, ., 3 | 0.5700 | 0.9665 | 0.9271 | yes | no |
| Q8EB40 | PYRC_SHEON | 3, ., 5, ., 2, ., 3 | 0.5705 | 0.9544 | 0.9154 | yes | no |
| Q1GYZ0 | PYRC_METFK | 3, ., 5, ., 2, ., 3 | 0.5968 | 0.9513 | 0.9072 | yes | no |
| Q0KEE2 | PYRC_CUPNH | 3, ., 5, ., 2, ., 3 | 0.5904 | 0.9513 | 0.9098 | yes | no |
| Q8Y249 | PYRC_RALSO | 3, ., 5, ., 2, ., 3 | 0.6095 | 0.9513 | 0.9098 | yes | no |
| Q8D3T9 | PYRC_VIBVU | 3, ., 5, ., 2, ., 3 | 0.5597 | 0.9544 | 0.9181 | yes | no |
| C1D672 | PYRC_LARHH | 3, ., 5, ., 2, ., 3 | 0.6314 | 0.9392 | 0.8956 | yes | no |
| A9L3F5 | PYRC_SHEB9 | 3, ., 5, ., 2, ., 3 | 0.5673 | 0.9544 | 0.9154 | yes | no |
| A1K3T5 | PYRC_AZOSB | 3, ., 5, ., 2, ., 3 | 0.5791 | 0.9513 | 0.9098 | yes | no |
| Q02QZ8 | PYRC_PSEAB | 3, ., 5, ., 2, ., 3 | 0.5723 | 0.9392 | 0.8879 | yes | no |
| A6V1R9 | PYRC_PSEA7 | 3, ., 5, ., 2, ., 3 | 0.5723 | 0.9392 | 0.8879 | yes | no |
| A6WK08 | PYRC_SHEB8 | 3, ., 5, ., 2, ., 3 | 0.5673 | 0.9544 | 0.9154 | yes | no |
| Q5P6Y5 | PYRC_AROAE | 3, ., 5, ., 2, ., 3 | 0.5789 | 0.9635 | 0.9215 | yes | no |
| B2UFJ8 | PYRC_RALPJ | 3, ., 5, ., 2, ., 3 | 0.6126 | 0.9513 | 0.9098 | yes | no |
| Q7MFB3 | PYRC_VIBVY | 3, ., 5, ., 2, ., 3 | 0.5660 | 0.9544 | 0.9181 | yes | no |
| Q0HLX7 | PYRC_SHESM | 3, ., 5, ., 2, ., 3 | 0.5642 | 0.9544 | 0.9154 | yes | no |
| B7VQP0 | PYRC_VIBSL | 3, ., 5, ., 2, ., 3 | 0.5615 | 0.9513 | 0.9152 | yes | no |
| B2VDJ8 | PYRC_ERWT9 | 3, ., 5, ., 2, ., 3 | 0.5929 | 0.9361 | 0.88 | yes | no |
| Q9KL24 | PYRC_VIBCH | 3, ., 5, ., 2, ., 3 | 0.5880 | 0.9483 | 0.9122 | yes | no |
| Q87J46 | PYRC_VIBPA | 3, ., 5, ., 2, ., 3 | 0.5628 | 0.9544 | 0.9181 | yes | no |
| Q475T7 | PYRC_CUPPJ | 3, ., 5, ., 2, ., 3 | 0.5936 | 0.9513 | 0.9098 | yes | no |
| Q6LPI7 | PYRC_PHOPR | 3, ., 5, ., 2, ., 3 | 0.5597 | 0.9544 | 0.9181 | yes | no |
| A1KSU5 | PYRC_NEIMF | 3, ., 5, ., 2, ., 3 | 0.5682 | 0.9452 | 0.9040 | yes | no |
| A1S9L6 | PYRC_SHEAM | 3, ., 5, ., 2, ., 3 | 0.5961 | 0.9361 | 0.9005 | yes | no |
| Q3J872 | PYRC_NITOC | 3, ., 5, ., 2, ., 3 | 0.6109 | 0.9392 | 0.8956 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.2 | 0.976 |
| 3rd Layer | 3.5.2.3 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 329 | |||
| PLN02599 | 364 | PLN02599, PLN02599, dihydroorotase | 0.0 | |
| PRK05451 | 345 | PRK05451, PRK05451, dihydroorotase; Provisional | 0.0 | |
| COG0418 | 344 | COG0418, PyrC, Dihydroorotase [Nucleotide transpor | 0.0 | |
| cd01294 | 335 | cd01294, DHOase, Dihydroorotase (DHOase) catalyzes | 0.0 | |
| TIGR00856 | 341 | TIGR00856, pyrC_dimer, dihydroorotase, homodimeric | 1e-149 | |
| cd01318 | 361 | cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg | 4e-13 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 6e-13 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 8e-11 | |
| cd01317 | 374 | cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg | 5e-07 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 7e-07 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 3e-06 | |
| cd01302 | 337 | cd01302, Cyclic_amidohydrolases, Cyclic amidohydro | 2e-05 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 2e-05 | |
| PRK07575 | 438 | PRK07575, PRK07575, dihydroorotase; Provisional | 1e-04 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 8e-04 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 0.004 |
| >gnl|CDD|178209 PLN02599, PLN02599, dihydroorotase | Back alignment and domain information |
|---|
Score = 633 bits (1634), Expect = 0.0
Identities = 250/317 (78%), Positives = 277/317 (87%), Gaps = 1/317 (0%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
S H+GRAIVMPNLKPP+TTTA A+AYRE I+KALP S+F PLMTLYLTD T+P+EIK
Sbjct: 48 SARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLTDNTTPEEIKA 107
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+ +GVVFAVKLYPAGATTNSQ GVTDL GKC+ VLEEM EQ MPLLVHGEVTDP VDIF
Sbjct: 108 AKASGVVFAVKLYPAGATTNSQAGVTDL-GKCLPVLEEMAEQGMPLLVHGEVTDPSVDIF 166
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DREKVFIDTIL PL+Q+LPQLK+VMEHITTMDAV+FVESC +G VAATVTPQHL+LNRNA
Sbjct: 167 DREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGDGNVAATVTPQHLLLNRNA 226
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
LFQGGL+PHNYCLPVLKREIHR+A+V A TSGS+KFFLGTDSAPH + KE +CGCAGIY
Sbjct: 227 LFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEASCGCAGIY 286
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+APVALSLYAK FEE GALDKLEAFTSFNGPDFYGLPRNTS I L K WKVPEA+SF
Sbjct: 287 SAPVALSLYAKAFEEAGALDKLEAFTSFNGPDFYGLPRNTSTITLVKSAWKVPEAYSFGG 346
Query: 311 GDIIPMFAGNTLEWQPS 327
G ++PMFAG T+ W
Sbjct: 347 GTVVPMFAGETIPWSVV 363
|
Length = 364 |
| >gnl|CDD|235474 PRK05451, PRK05451, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 593 bits (1531), Expect = 0.0
Identities = 204/312 (65%), Positives = 237/312 (75%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
+GRAIVMPNL PP+TT A A+AYRE IL ALPA SNF PLMTLYLTD T PDE++ A+
Sbjct: 33 QFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDNTDPDELERAKA 92
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
+GVV A KLYPAGATTNS GVTD+ K VLE M + MPLLVHGEVTDP +DIFDRE
Sbjct: 93 SGVVTAAKLYPAGATTNSDAGVTDI-EKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDRE 151
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
VFID +L+PL +R P+LK+V EHITT DAV +V + +AAT+TP HL++NRN +
Sbjct: 152 AVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVREAND-NLAATITPHHLLINRNDMLV 210
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH YCLP+LKRE HRQA+ A TSG+ KFFLGTDSAPH R KE ACGCAGI++AP
Sbjct: 211 GGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAP 270
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL LYA+VFEE GALDKLEAF S NGPDFYGLPRNT I L + PW VPE+ F +
Sbjct: 271 AALELYAEVFEEAGALDKLEAFASLNGPDFYGLPRNTDTITLVREPWTVPESIPFGDETV 330
Query: 314 IPMFAGNTLEWQ 325
+P AG TL W
Sbjct: 331 VPFRAGETLRWS 342
|
Length = 345 |
| >gnl|CDD|223495 COG0418, PyrC, Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 507 bits (1307), Expect = 0.0
Identities = 196/312 (62%), Positives = 236/312 (75%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
+GRAI+MPNL PP+TT A A+AYRE ILKA+PA FTPLMTLYLTD+T+P+E++ A+
Sbjct: 33 GFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTDSTTPEELEEAKA 92
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
GV+ AVKLYPAGATTNS GVTD+ K VLE M + MPLLVHGEVTD VDIFDRE
Sbjct: 93 KGVIRAVKLYPAGATTNSDSGVTDIE-KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDRE 151
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
FI+++L+PL QR P+LK+V+EHITT DAV++V+ +AAT+TP HL+LNRN +
Sbjct: 152 AAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKDA-NNNLAATITPHHLLLNRNDMLV 210
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH +CLP+LKRE HR+A+ A TSG KFFLGTDSAPH R RKE ACGCAGI++AP
Sbjct: 211 GGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESACGCAGIFSAP 270
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL LYA+VFEE ALD LEAF S NGP FYGLPRN I L K W+VPE+ F +
Sbjct: 271 FALPLYAEVFEEENALDNLEAFASDNGPKFYGLPRNDKTITLVKEEWQVPESIPFGDDIV 330
Query: 314 IPMFAGNTLEWQ 325
+P AG TL W
Sbjct: 331 VPFRAGETLSWS 342
|
Length = 344 |
| >gnl|CDD|238619 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 505 bits (1302), Expect = 0.0
Identities = 189/314 (60%), Positives = 226/314 (71%), Gaps = 4/314 (1%)
Query: 11 SVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKL 70
+ + RAIVMPNLKPP+TTTA A+AYRE IL A P NFTPLMTLYLT+ T+P+E++
Sbjct: 26 TARGFSRAIVMPNLKPPVTTTADALAYRERILAADP-GPNFTPLMTLYLTENTTPEELRE 84
Query: 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130
A+K G + VKLYPAGATTNSQ GVTD K VLE M + MPLLVHGEV D +D+
Sbjct: 85 AKKKGGIRGVKLYPAGATTNSQGGVTD-LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVL 143
Query: 131 DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA 190
DRE FI +L+PL QR P+LK+V+EHITT DAV++V+SC E VAAT+TP HL+L R+
Sbjct: 144 DREAKFI-PVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNEN-VAATITPHHLLLTRDD 201
Query: 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250
L GGL PH YC PV KR R+A+ A TSG KFFLG+DSAPH + KE +CGCAGI+
Sbjct: 202 LLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIF 261
Query: 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSF 310
+AP+AL A+VFEE ALDKLEAF S NGP+FYGLP N I L K PWKVPE F
Sbjct: 262 SAPIALPYLAEVFEEHNALDKLEAFASDNGPNFYGLPPNKKTITLVKEPWKVPEKIPFGN 321
Query: 311 GDIIPMFAGNTLEW 324
++P AG TL W
Sbjct: 322 NGVVPFRAGETLRW 335
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. Length = 335 |
| >gnl|CDD|129935 TIGR00856, pyrC_dimer, dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Score = 422 bits (1086), Expect = e-149
Identities = 186/321 (57%), Positives = 233/321 (72%), Gaps = 3/321 (0%)
Query: 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTS 64
+LP + + RAIVMPNL PP+TT AAVAYRE IL A+PA +FTPLMTLYLTD+ +
Sbjct: 22 AVLPY-TSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTDSLT 80
Query: 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTD 124
P+E++ A+ GVV AVKLYPAGATTNS GVTD + VLE M + +PLL+HGEVT
Sbjct: 81 PEELERAKNEGVVRAVKLYPAGATTNSSHGVTD-IDAIMPVLEAMEKIGLPLLLHGEVTH 139
Query: 125 PIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHL 184
+DIFDRE FI+++L+PL QR P LKVV+EHITT DA+ +VE +AAT+TPQHL
Sbjct: 140 GDIDIFDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNNR-LAATITPQHL 198
Query: 185 VLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECAC 244
+ RN L GG+ PH YCLP+LKR IH+QA++ SG KFFLGTDSAPH R RKE +C
Sbjct: 199 MFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKESSC 258
Query: 245 GCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPE 304
GCAG ++AP AL YA+VFEEM AL+ LEAF S NGP FYGLP N++KI+L K ++PE
Sbjct: 259 GCAGCFSAPTALPSYAEVFEEMNALENLEAFCSDNGPQFYGLPVNSTKIELVKKEQQIPE 318
Query: 305 AFSFSFGDIIPMFAGNTLEWQ 325
+ + + ++P AG TL W
Sbjct: 319 SIALTDDTLVPFRAGETLSWS 339
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 341 |
| >gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 33/283 (11%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80
MPN KPP TTTA A+ + + A + ++ LY T S D ++ K
Sbjct: 44 MPNTKPP-TTTAEALYEKLRLAAAK-SVVDY----GLYFGVTGSED-LEELDKAPPAG-Y 95
Query: 81 KLYPAGATTNSQDGVTDLFG--------KCVHV-LEEMVEQNMPLLVHGEVTDPIVDIFD 131
K++ +T + D L H E+ + +N L I D
Sbjct: 96 KIFMGDSTGDLLDDEETLERIFAEGSVLVTFHAEDEDRLRENRKELKG---ESAHPRIRD 152
Query: 132 REKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNAL 191
E + T + R ++ + H++T + +K ++ K G VTP HL L+
Sbjct: 153 AEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAKPGV-TVEVTPHHLFLDVEDY 211
Query: 192 FQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH-----ERGRKECACGC 246
L P L+ R+A++ A+ G R + +D APH +G G
Sbjct: 212 --DRLGTLGKVNPPLRSREDRKALLQALADG-RIDVIASDHAPHTLEEKRKGYPAAPSGI 268
Query: 247 AGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 288
G+ A P+ L+L V + + +L ++ TS N +G+
Sbjct: 269 PGVETALPLMLTL---VNKGILSLSRVVRLTSHNPARIFGIKN 308
|
This group contains the archeal members of the DHOase family. Length = 361 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 74/300 (24%), Positives = 111/300 (37%), Gaps = 51/300 (17%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
+ MPN KPPI T A E ++ L T + GV
Sbjct: 89 VDMPNTKPPIDTAEALEDKLERAKGKSVV--DYAFYGGL----TKGNLGKLELTERGVEA 142
Query: 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID 138
K + +T D V + LE E +LVH E D I E V +
Sbjct: 143 GFKGFMDDSTGALDDDVLEE------ALEYAAELGALILVHAEDDDLI-----AEGVMNE 191
Query: 139 TILQP--------------LIQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT 178
+ P I R +L +V + HI+T ++V+ + + K + T
Sbjct: 192 GLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHISTKESVELIRAAKAEGIRVT 251
Query: 179 --VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPH- 235
VTP HL+L+ + L P L+ E R+A+ A+ G + +D APH
Sbjct: 252 AEVTPHHLLLDEEDIE--DLGTLAKVNPPLRDEEDREALWEALKDGV-IDVIASDHAPHT 308
Query: 236 --ERGRK--ECACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNT 290
E+ E G G+ A P+ L+L K +L++L S N +GLP
Sbjct: 309 LEEKRLPFEEAPSGIPGLETALPLLLTLVKK---GRLSLERLVELLSTNPARIFGLPPKG 365
|
Length = 430 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 8e-11
Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 30/235 (12%)
Query: 110 VEQNMPLLV------HGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA 163
+E N+ LL+ E+ + ++D E +++ +I+ + ++ + A
Sbjct: 69 LEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGADLIK-VIEDGGKTAKAIDGVLPALA 127
Query: 164 VKFVESCKEGFVAATVTPQHLVLNR-----------------NALFQGGLRPHNYCLPVL 206
+ + V GG+ +CL +
Sbjct: 128 PHDPPTVSHEGLKNEVELAEETEEAEKLGLLVHIHAAEASGEVNAILGGVDLLAHCLHLD 187
Query: 207 KREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE-CACGCAGIYNAPVALSLYAKVFEE 265
I ++ SG L +S H GR + GI + A++ ++
Sbjct: 188 DEAI---ELLKEAGSGIAHCPLSNESILHRGGRFSLMSGDAQGIGELGSGGARLARLADK 244
Query: 266 MGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVP-EAFSFSFGDIIPMFAG 319
G + NG DFY P S I+ ++ P +A + + G
Sbjct: 245 GGVVGLGTDGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLD-DRVGSIEVG 298
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 152 KVVMEHITTMDAVKFVESCKEGF--VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE 209
+V +H++T +++ + K V A VTP HL+L+ AL + P L+ E
Sbjct: 187 RVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALE--SYDTNAKVNPPLRSE 244
Query: 210 IHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVF--EE 265
R+A++ A+ G+ + +D APH K+ A GI AL L +
Sbjct: 245 EDREALIEALKDGTID-AIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGG 303
Query: 266 MGALDKLEAFTSFNGPDFYGLPRNT 290
+ L L S N GLP
Sbjct: 304 LLTLPDLIRALSTNPAKILGLPPGR 328
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 64/270 (23%), Positives = 98/270 (36%), Gaps = 45/270 (16%)
Query: 15 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKT 74
+ MPN KPPI T + ++ LK + + + Y T +L
Sbjct: 71 FTTVADMPNTKPPI-DTPETLEWKLQRLKKV-SLVDVHL----YGGVTQGNQGKELTE-- 122
Query: 75 GVVFAVKLYPAGATTN--SQDGVTDL-FGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFD 131
A +L AGA + DG LE +P+ +H E DP D+
Sbjct: 123 ----AYELKEAGAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAE--DP--DLIY 174
Query: 132 REKVFIDTILQPL-------------IQRLPQL------KVVMEHITTMDAVKFVESCKE 172
+ L + RL +L V + HI+T ++++ + K
Sbjct: 175 GGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKS 234
Query: 173 GFVAAT--VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGT 230
+ T VTP HL+L+ + L + P L+ + R A++ + G T
Sbjct: 235 QGIKITAEVTPHHLLLSEEDV--ARLDGNGKVNPPLREKEDRLALIEGLKDGIIDII-AT 291
Query: 231 DSAPH--ERGRKECACGCAGIYNAPVALSL 258
D APH E KE A GI AL L
Sbjct: 292 DHAPHTLEEKTKEFAAAPPGIPGLETALPL 321
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 216
HI+T + V ++ + + VTP HL L+R L P L+ E R+A+
Sbjct: 234 HISTPEGV---DAARREGITCEVTPHHLFLSRRDW--ERLGTFGKMNPPLRSEKRREALW 288
Query: 217 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP---------VALSLYAKVFEEMG 267
+ G+ + +D APH R K+ A I++AP + L L A V +
Sbjct: 289 ERLNDGTID-VVASDHAPHTREEKD-----ADIWDAPSGVPGVETMLPLLLAA-VRKNRL 341
Query: 268 ALDKLEAFTSFNGPDFYGLPR 288
L+++ T+ N +GL
Sbjct: 342 PLERVRDVTAANPARIFGLDG 362
|
Length = 443 |
| >gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 49/231 (21%), Positives = 83/231 (35%), Gaps = 44/231 (19%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPAS-SNFTPLMTLYLTDTTSPDEIKLARKTGVV 77
I MPN PP A I A +S +F+ + DE+K G+
Sbjct: 42 IDMPNTGPPPIDL---PAIELKIKLAEESSYVDFS--FHAGIGPGDVTDELKKLFDAGIN 96
Query: 78 FAVKLY-PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVF 136
++K++ L E+ + P++VH E
Sbjct: 97 -SLKVFMNYYFGELFDVDDGTLMRT----FLEIASRGGPVMVHAE--------------- 136
Query: 137 IDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAAT--VTPQHLVLNRNALFQG 194
L + V + H+++ +A++ ++ K V T V P HL L+ + L
Sbjct: 137 ---RAAQLAE-EAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLN 192
Query: 195 G----LRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE 241
G + P P+ +E R+A+ V +G +D APH + KE
Sbjct: 193 GAWGKVNP-----PLRSKE-DREALWEGVKNGKIDTI-ASDHAPHSKEEKE 236
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 69/292 (23%), Positives = 101/292 (34%), Gaps = 77/292 (26%)
Query: 20 VMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79
MPN KP I T V E +L A++ G+V
Sbjct: 90 AMPNTKPVIDT--PEVV--EYVLD--------------------------RAKEAGLV-- 117
Query: 80 VKLYPAGATTNSQDG--VTDL----------F---GKCVH---VLEEMVEQ----NMPLL 117
+ P GA T G +T+ F G V ++ +E ++ +
Sbjct: 118 -DVLPVGAITKGLAGEELTEFGALKEAGVVAFSDDGIPVQDARLMRRALEYAKALDLLIA 176
Query: 118 VHGEVTDPIVDIFDREKVFIDTI-LQP--------------LIQRLPQLKVVMEHITTMD 162
H E E + L L+ +V + H++T
Sbjct: 177 QHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAG 236
Query: 163 AVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT 220
+V+ + K G V A VTP HL+L L P+ P L+ E R+A++ +
Sbjct: 237 SVELIRWAKALGIKVTAEVTPHHLLLTDEDLL--TYDPNYKVNPPLRTEEDREALIEGLK 294
Query: 221 SGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD 270
G+ + TD APH R KEC A GI ALSL + G LD
Sbjct: 295 DGTIDA-IATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKTGLLD 345
|
Length = 423 |
| >gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ-GGLRPHNYCLPVLKREIHRQAV 215
H++T + + K +V A VTPQHL+LN +A + G L N P L+ +A+
Sbjct: 232 HLSTAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYERIGTLAQMN---PPLRSPEDNEAL 288
Query: 216 VSAVTSGSRKFFLGTDSAPH 235
A+ G F+ TD APH
Sbjct: 289 WQALRDGVID-FIATDHAPH 307
|
Length = 438 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 216
HI+T D +K + +V+ VTP HL L R + L P L+ E R+A+
Sbjct: 204 HISTKDGLKLILKSNLPWVSFEVTPHHLFLTRKDYERNPLLKVY---PPLRSEEDRKALW 260
Query: 217 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGI--YNAPVALSLYA 260
S+ + +D APH KE G AGI V L L A
Sbjct: 261 ENF---SKIPIIASDHAPHTLEDKE--AGAAGIPGLETEVPLLLDA 301
|
Length = 398 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.004
Identities = 50/273 (18%), Positives = 86/273 (31%), Gaps = 62/273 (22%)
Query: 18 AIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPD----------E 67
+ M + PP TT AA A E A AS+ ++ L + +
Sbjct: 52 VVDMGSTPPPTTTKAAIEAVAE----AARASAGIRVVLGLGIPGVPAAVDEDAEALLLEL 107
Query: 68 IKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV 127
++ + G V +KL T D VLEE + +P+++H
Sbjct: 108 LRRGLELGAV-GLKLAGPYTATGLSDESLR------RVLEEARKLGLPVVIHAGELPDPT 160
Query: 128 DIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLN 187
+ + + +VV+ H++ +D + +E KE V+ V P L
Sbjct: 161 RALED---LVALLRLG-------GRVVIGHVSHLDP-ELLELLKEAGVSLEVCPLSNYLL 209
Query: 188 RNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247
+A+ + G + LGTD PH
Sbjct: 210 GR------------------DGEGAEALRRLLELG-IRVTLGTDGPPH-----------P 239
Query: 248 GIYNAPVALSLYAKVFEEMGALDKLEAFTSFNG 280
+ L L KV +L++ + N
Sbjct: 240 LGTDLLALLRLLLKVLRLGLSLEEALRLATINP 272
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 100.0 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 100.0 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 100.0 | |
| PRK09059 | 429 | dihydroorotase; Validated | 100.0 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 100.0 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 100.0 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 100.0 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 100.0 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 100.0 | |
| PLN02599 | 364 | dihydroorotase | 100.0 | |
| PRK08044 | 449 | allantoinase; Provisional | 100.0 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 100.0 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK09060 | 444 | dihydroorotase; Validated | 100.0 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 100.0 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 99.94 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 99.93 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.77 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 99.73 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 99.65 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 99.58 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 99.56 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 99.55 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 99.53 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.53 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 99.51 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 99.49 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.47 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 99.42 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 99.37 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 99.34 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 99.29 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 99.21 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.19 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 99.19 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.18 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 99.06 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.05 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.05 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 99.04 | |
| PLN02303 | 837 | urease | 99.01 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.01 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 98.73 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 98.7 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 98.54 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 98.51 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 98.36 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.28 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 98.2 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 98.2 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 98.19 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 98.16 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 98.16 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 98.11 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 98.1 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 97.96 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 97.92 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 97.87 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 97.87 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 97.86 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 97.84 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 97.84 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 97.84 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 97.83 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 97.79 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 97.78 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 97.64 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 97.55 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 97.53 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 97.53 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 97.52 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 97.45 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 97.44 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 97.41 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 97.33 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 97.28 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 97.23 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 97.18 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 96.98 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 96.91 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 96.9 | |
| PRK06886 | 329 | hypothetical protein; Validated | 96.82 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 96.57 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 96.57 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 96.43 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 96.37 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 96.33 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 96.27 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 96.19 | |
| PRK06846 | 410 | putative deaminase; Validated | 95.96 | |
| PRK10812 | 265 | putative DNAse; Provisional | 95.94 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 95.59 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 95.58 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 95.47 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 95.24 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 94.86 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 94.62 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 94.61 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 94.51 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 94.03 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 93.67 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 93.39 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 93.19 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 91.8 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 91.13 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 90.79 | |
| PRK10425 | 258 | DNase TatD; Provisional | 90.32 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 88.91 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 88.6 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 87.49 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 85.45 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 81.15 |
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=561.64 Aligned_cols=308 Identities=24% Similarity=0.254 Sum_probs=269.1
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
+-||..||++||+|||+|||||+|++++++.++.+..++++++. |||++|++++.+ .....++-++.. ++++|.
T Consensus 73 ~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~--vd~~~~~~it~~-~~~~~~~~~~~~---~~g~~~ 146 (430)
T COG0044 73 FETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSV--VDYAFYGGLTKG-NLGKLELTERGV---EAGFKG 146 (430)
T ss_pred HHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccce--eEEEEEEEEecc-ccchhhhhhhhh---ccceEE
Confidence 45899999999999999999999999999999999999887666 999999998532 111122333321 358899
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPLI 145 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~l 145 (329)
||.++. +..+. ..++++|++++++|.++++||||++++. .+..+|..+++|.+ .+
T Consensus 147 F~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~--~l 218 (430)
T COG0044 147 FMDDST-----GALDD-DVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDL--EL 218 (430)
T ss_pred EecCCc-----CcCCH-HHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHH--HH
Confidence 996531 33455 8999999999999999999999996431 12478999999999 99
Q ss_pred HhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC
Q 020186 146 QRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 223 (329)
Q Consensus 146 a~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~ 223 (329)
|+.+|+|+||+|+||++++++|++||. .+||||||||||+||++++. .+++++|||||||+++||++||++|++|.
T Consensus 219 a~~~g~~vhi~HiSt~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~--~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ 296 (430)
T COG0044 219 ARATGARVHICHISTKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIE--DLGTLAKVNPPLRDEEDREALWEALKDGV 296 (430)
T ss_pred HHHhCCcEEEEEcCCHHHHHHHHHHhhcCCceEEeecchheEccHhHhh--ccCcceEECCCCCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999997 79999999999999999987 47899999999999999999999999999
Q ss_pred CCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCCC-------cccE
Q 020186 224 RKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPRN-------TSKI 293 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~~-------dADl 293 (329)
|| +|+||||||+.+||..+| .++|++|+|+.+|++|+.++ +++||++++++||+||||+|||+.| +|||
T Consensus 297 ID-~iasDHaPht~eeK~~~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~~~g~i~~G~~ADl 375 (430)
T COG0044 297 ID-VIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPPKGAIEEGADADL 375 (430)
T ss_pred Cc-EEEcCCCCCCHHHhccchhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCCCCCcccCCCccCE
Confidence 99 999999999999998655 56799999999999998554 4789999999999999999999532 8999
Q ss_pred EEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 294 KLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 294 vi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|| +++|+|+.++++||++|||| +|++++|+|++
T Consensus 376 ~lvD~~~~~~i~~~~~~sk~~~sPf-~G~~~~g~v~~ 411 (430)
T COG0044 376 VLVDPDEEWTIRAEELYSKAKNSPF-EGFELKGRVVA 411 (430)
T ss_pred EEEcCCCCeEEchhhhccccCCCCc-CCCEEeeeEEE
Confidence 999 68999999999999999999 99999999986
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-74 Score=558.60 Aligned_cols=307 Identities=19% Similarity=0.190 Sum_probs=272.4
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K 81 (329)
|.|+..+|++||||||++|||+.|++++.+.++.+++++++.+. |||.+|++++.+ .+.+++++.+|.+.|+ .+||
T Consensus 77 ~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~--vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv-~~f~ 153 (418)
T PRK07369 77 LASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPP--VQLHFWGALTLGGQGKQLTELAELAAAGV-VGFT 153 (418)
T ss_pred HHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCc--eeEEEEEEEeeCCCCccHhhHHHHHHCCC-EEEE
Confidence 45788999999999999999999999999999999888877655 999999998644 2346889999988885 5887
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~ 144 (329)
.+ .++.|. ..++++|++++++|.++++||||+++.. .+..+|..++.|++ .
T Consensus 154 ~~---------~~~~~~-~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~--~ 221 (418)
T PRK07369 154 DG---------QPLENL-ALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALL--E 221 (418)
T ss_pred CC---------CcCCCH-HHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHH--H
Confidence 21 234455 7899999999999999999999988631 13578999999999 8
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
+|+.+|+|+||+|+||++++++|+++|+ .+||||||||||+||++++. .+++++|||||||+++||++||++|++|
T Consensus 222 la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~--~~~~~~kv~PPLR~~~d~~aL~~~l~~G 299 (418)
T PRK07369 222 LVAAIGTPVHLMRISTARSVELIAQAKARGLPITASTTWMHLLLDTEALA--SYDPNLRLDPPLGNPSDRQALIEGVRTG 299 (418)
T ss_pred HHHHHCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHh--ccCCCcEECCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986 79999999999999999986 3578999999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCCCC------ccc
Q 020186 223 SRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLPRN------TSK 292 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~~~------dAD 292 (329)
+|| +|+||||||+.++|..+|. ++|++|+|+.||++++.++ +.++++++++++|.||||+||++.| +||
T Consensus 300 ~Id-~i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~~G~i~~G~~AD 378 (418)
T PRK07369 300 VID-AIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQEPPSLAPGQPAE 378 (418)
T ss_pred CCC-EEEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCcCcccCCCcCC
Confidence 999 9999999999999976663 5699999999999996543 3689999999999999999999644 799
Q ss_pred EEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 293 IKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 293 lvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|+|| +++|+|+.++++|+++|||| +|++++|||++
T Consensus 379 lvi~d~~~~~~v~~~~~~s~~~~sp~-~G~~l~G~v~~ 415 (418)
T PRK07369 379 LILFDPQKTWTVSAQTLHSLSRNTPW-LGQTLKGRVLQ 415 (418)
T ss_pred EEEEcCCCCEEECcccccCCCCCCCC-CCCEeeeEEEE
Confidence 9999 68999999999999999999 99999999986
|
|
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=523.78 Aligned_cols=311 Identities=59% Similarity=0.936 Sum_probs=264.8
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhC-CCCccEEEEEEEEeCCCCCHHHHHHHHhc-CceeEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKAL-PASSNFTPLMTLYLTDTTSPDEIKLARKT-GVVFAV 80 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~-~~~vd~~~~~~~~~~~~~~~~el~~l~~~-G~v~~~ 80 (329)
|.|++.+|++|| ||+++|||+.|+.++.+.+..+..++++.+ + +||.+++++..+.+...++++++.+. | ++||
T Consensus 19 ~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~el~~~~~~~G-~~g~ 94 (335)
T cd01294 19 LKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPG--PNFTPLMTLYLTENTTPEELREAKKKGG-IRGV 94 (335)
T ss_pred HHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCC--CcEEEEEEEeccCCCCHHHHHHHHHhCC-ceEE
Confidence 457889999999 999999999999998887877777777654 4 78988877643434357899999876 8 5699
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhc-CCCeEEEEecC
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRL-PQLKVVMEHIT 159 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~-~~~~lhi~HvS 159 (329)
|+||.+...+.+.++.|+ ..++++|++++++|++|++||||..+.......|.+.+.+++ .+|+. +++|+||+|+|
T Consensus 95 Klf~~~~~~~~~~~~~d~-~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~--~lA~~~p~~~v~i~Hvs 171 (335)
T cd01294 95 KLYPAGATTNSQGGVTDL-EKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLE--PLAQRFPKLKIVLEHIT 171 (335)
T ss_pred EEecCCCccCCCCCcCCH-HHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHH--HHHHHcCCCeEEEeccc
Confidence 999864222233445555 899999999999999999999998763333455666777777 78885 79999999999
Q ss_pred CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE-EecCCCCCCcC
Q 020186 160 TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF-LGTDSAPHERG 238 (329)
Q Consensus 160 t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~-i~SDHaPh~~~ 238 (329)
|++++++|+++|+ +||||||||||+||++++....+|+++|||||||+++||++||++|++|.|| + |+||||||+.+
T Consensus 172 t~~~~~~i~~ak~-~vt~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id-~~i~SDHaP~~~~ 249 (335)
T cd01294 172 TADAVEYVKSCNE-NVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPK-FFLGSDSAPHPKS 249 (335)
T ss_pred HHHHHHHHHhCCC-CcEEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCC-eEEECCCCCCCCc
Confidence 9999999999986 8999999999999999985322588999999999999999999999999999 8 99999999999
Q ss_pred cccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCC
Q 020186 239 RKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFA 318 (329)
Q Consensus 239 eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~ 318 (329)
+|..++|.+|++++|+++|++++++++++++++++++||+||||+|||+.+.++|++++++|+|++++++|+++|||| +
T Consensus 250 ~K~~~~g~~Gi~~~~~~l~~~~~~~~~~l~l~~~v~~~s~nPA~i~gl~~~kg~i~~~~~~~~v~~~~~~s~~~~sp~-~ 328 (335)
T cd01294 250 NKESSCGCAGIFSAPIALPYLAEVFEEHNALDKLEAFASDNGPNFYGLPPNKKTITLVKEPWKVPEKIPFGNNGVVPF-R 328 (335)
T ss_pred cccCCCCCccccCHHHHHHHHHHHHhccCCHHHHHHHHHhHHHHHhCCCCCCCeEEEEeeceEcCchhccCCCceecc-c
Confidence 998888989999999999999876667899999999999999999999444599999999999999999999999999 6
Q ss_pred C-cEEE
Q 020186 319 G-NTLE 323 (329)
Q Consensus 319 G-~~l~ 323 (329)
| .+|+
T Consensus 329 g~~~~~ 334 (335)
T cd01294 329 AGETLR 334 (335)
T ss_pred CCccCC
Confidence 5 4443
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=536.61 Aligned_cols=308 Identities=19% Similarity=0.179 Sum_probs=270.3
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K 81 (329)
+.++..+|++|||||+++|||+.|++++.+.++.+.+.+++.+. +||.++++++.+ .+++++++.+|.+.|+ .+||
T Consensus 80 ~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~--vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv-~~f~ 156 (429)
T PRK09059 80 IASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAI--VNIHPAAAITKGLAGEEMTEFGLLRAAGA-VAFT 156 (429)
T ss_pred HHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCc--ccEEEEeEEecCCCCcchHHHHHHHhcCc-EEEe
Confidence 34677899999999999999999999999999888888776555 999999987533 3456788999988884 4665
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~ 144 (329)
. ++.++.|. ..++++|++++++|.++++||||.++.. .+..+|..++.|++ .
T Consensus 157 ~--------~~~~~~~~-~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~--~ 225 (429)
T PRK09059 157 D--------GRRSVANT-QVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDL--R 225 (429)
T ss_pred c--------CCcccCCH-HHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHH--H
Confidence 2 12345565 7799999999999999999999987631 12478999999999 9
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
+|+++|+|+||+|+||++++++|+++|+ .+||||||||||+|+++++. .+++++|||||||+++||++||++|++|
T Consensus 226 la~~~~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~--~~~~~~kvnPPLR~~~d~~~L~~~l~~g 303 (429)
T PRK09059 226 LAALTRGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLNENDIG--EYRTFFKLSPPLRTEDDRVAMVEAVASG 303 (429)
T ss_pred HHHHHCCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhccHHHHh--ccCCccEEcCCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999986 79999999999999999986 3688999999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCCC------cccE
Q 020186 223 SRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPRN------TSKI 293 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~~------dADl 293 (329)
.|| +|+|||+||+.++|..+|+ ++|++|+|+++|++++.+. +.++++++++++|+||||+|||++| +|||
T Consensus 304 ~id-~i~sDh~p~~~~~K~~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~gl~~G~l~~G~~ADl 382 (429)
T PRK09059 304 TID-IIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFGLPAGTLKPGAPADI 382 (429)
T ss_pred CCc-EEEeCCCCCCHHHCcCChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCcCcccCCCcCCE
Confidence 999 9999999999999987764 4699999999999997654 4689999999999999999999754 7999
Q ss_pred EEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 294 KLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 294 vi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|| +++|+|+.++++|+++|||| +|++++|||++
T Consensus 383 vl~d~~~~~~v~~~~~~s~~~~sPf-~G~~l~G~v~~ 418 (429)
T PRK09059 383 IVIDLDEPWVVDPEDLKSRSKNTPF-EEARFQGRVVR 418 (429)
T ss_pred EEECCCCCEEECcccCccCCCCCCC-CCCEEeeEEEE
Confidence 999 69999999999999999999 99999999975
|
|
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=515.15 Aligned_cols=309 Identities=58% Similarity=0.950 Sum_probs=262.3
Q ss_pred CccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhc-CceeEEEEeeccccccCC
Q 020186 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKT-GVVFAVKLYPAGATTNSQ 92 (329)
Q Consensus 14 GvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~-G~v~~~K~f~~~~~~~~~ 92 (329)
|||++++|||+.|++++.+.++.+.+++++.++..+||.+|++++.+.+...+||+.+.+. | +.|||+||++...+++
T Consensus 30 ~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~~~~~~Ei~~l~~~~G-v~g~Klf~~~~~~~~~ 108 (341)
T TIGR00856 30 IFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTDSLTPEELERAKNEGV-VRAVKLYPAGATTNSS 108 (341)
T ss_pred hcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEECCCCCCHHHHHHHHHcCC-eEEEEEccCCcccCCC
Confidence 4999999999999999999999888888776530169999999853434467899999877 8 5799999864222334
Q ss_pred CCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHH-hcCCCeEEEEecCCHHHHHHHHccc
Q 020186 93 DGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ-RLPQLKVVMEHITTMDAVKFVESCK 171 (329)
Q Consensus 93 ~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la-~~~~~~lhi~HvSt~~sl~~i~~ak 171 (329)
.++.|+ ..++++|++++++|.++++||||.+-.......|..++.+.+. .+| +.+++|+||+|+||++++++|+++|
T Consensus 109 ~~v~dd-~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~-~lA~~~~~~~~~i~H~st~~~~~~i~~a~ 186 (341)
T TIGR00856 109 HGVTDI-DAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLE-PLRQRFPALKVVLEHITTKDAIDYVEDGN 186 (341)
T ss_pred cCCCCH-HHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHH-HHHHHccCCeEEEEecCcHHHHHHHHHcC
Confidence 556676 8999999999999999999999973111223346666765552 455 5789999999999999999999997
Q ss_pred CCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE-EecCCCCCCcCcccccCCcCCcc
Q 020186 172 EGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF-LGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 172 ~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~-i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
.+||||||||||+||++++...++|+++|||||||+++||++||++|++|.|| + |+||||||+.++|..+..++|++
T Consensus 187 -~~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id-~~i~SDHaP~~~~~K~~~~~~~G~~ 264 (341)
T TIGR00856 187 -NRLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPK-FFLGTDSAPHARHRKESSCGCAGCF 264 (341)
T ss_pred -CCEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCC-EEEeCCCCCCChhHcCCCCCCCCcc
Confidence 46999999999999999985312578999999999999999999999999999 8 99999999999997544457999
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCCCcEEEEEEe
Q 020186 251 NAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 327 (329)
Q Consensus 251 ~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~ 327 (329)
|+|+++|++++++.+.++++++++++|+||||+||||+|||||+||+++|+|++++++|+++||||+.|++|+|+|.
T Consensus 265 g~e~~l~~~~~~~~~~~~l~~~v~~~s~nPAk~~gl~~~dAdi~~~~~~~~i~~~~~~s~~~~sp~~~~~~~~~~v~ 341 (341)
T TIGR00856 265 SAPTALPSYAEVFEEMNALENLEAFCSDNGPQFYGLPVNSTKIELVKKEQQIPESIALTDDTLVPFRAGETLSWSVK 341 (341)
T ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCceEEEEeccEEeCchhccCCCCcccccCCcccceeeC
Confidence 99999999988776778999999999999999999987899999999999999999999999999999999999984
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-69 Score=511.02 Aligned_cols=295 Identities=21% Similarity=0.244 Sum_probs=259.8
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..||++||||||++|||+.|++++.+.++.+.+++++.+. |||++|+++ ..+.+.+||.++.+.|+ .+||+
T Consensus 26 ~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~--~~~~~~~el~~l~~~Gv-~g~K~ 100 (337)
T cd01302 26 FESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSY--VDFSFHAGI--GPGDVTDELKKLFDAGI-NSLKV 100 (337)
T ss_pred HHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcE--eeEEEEEec--cCccCHHHHHHHHHcCC-cEEEE
Confidence 46889999999999999999999999999999998888876655 999999886 33446889999998995 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMD 162 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~ 162 (329)
|+++. ++.....++ ..++++|+++++.|.++++||| +++ .+|+++|+|+||+|+|+++
T Consensus 101 f~~~~--~~~~~~~~~-~~l~~~~~~~~~~g~~v~~H~E-----------------r~~--~la~~~g~~l~i~Hiss~~ 158 (337)
T cd01302 101 FMNYY--FGELFDVDD-GTLMRTFLEIASRGGPVMVHAE-----------------RAA--QLAEEAGANVHIAHVSSGE 158 (337)
T ss_pred EEecc--CCCccccCH-HHHHHHHHHHHhcCCeEEEeHH-----------------HHH--HHHHHhCCcEEEEeCCCHH
Confidence 99642 222212344 8899999999999999999999 455 7889999999999999999
Q ss_pred HHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcc
Q 020186 163 AVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK 240 (329)
Q Consensus 163 sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK 240 (329)
++++|+++|+ .+||||||||||+|+++++. .+++++|||||||+++||++||++|++|.|| +|+|||+||+.++|
T Consensus 159 ~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~--~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id-~i~sDh~p~~~~~k 235 (337)
T cd01302 159 ALELIKFAKNKGVKVTCEVCPHHLFLDESMLR--LNGAWGKVNPPLRSKEDREALWEGVKNGKID-TIASDHAPHSKEEK 235 (337)
T ss_pred HHHHHHHHHHCCCcEEEEcChhhheeCHHHhh--CCCceEEEeCCCCCHHHHHHHHHHHhCCCCC-EEecCCCCCCHHHh
Confidence 9999999986 79999999999999999986 3588999999999999999999999999999 99999999999998
Q ss_pred cc--cC--CcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCC-CCC------cccEEEE--ecceeecCCc
Q 020186 241 EC--AC--GCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGL-PRN------TSKIKLT--KIPWKVPEAF 306 (329)
Q Consensus 241 ~~--~~--~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl-~~~------dADlvi~--~~~~~v~~~~ 306 (329)
.. +| .++|++|+|+.+|++++.+ +++++++++++++|.||||+||+ ++| +|||+|| +.+|+|+.++
T Consensus 236 ~~~~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~~~~~~~~s~~pA~~~gl~~~g~i~~G~~ADlvi~d~~~~~~v~~~~ 315 (337)
T cd01302 236 ESGKDIWKAPPGFPGLETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAEE 315 (337)
T ss_pred ccCCCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCCccccCCcCCEEEEeCCCcEEEcHHH
Confidence 64 44 3469999999999999755 44789999999999999999999 444 7999999 6899999999
Q ss_pred cCcCCcccccCCCcEEEEEEee
Q 020186 307 SFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 307 ~~s~~~~spf~~G~~l~G~v~~ 328 (329)
++|+++|||| +|++|+|||++
T Consensus 316 ~~s~~~~sp~-~G~~l~G~v~~ 336 (337)
T cd01302 316 IESKADWTPF-EGMEVTGKPVS 336 (337)
T ss_pred hcccCCCCCc-CCcEEEEEEEE
Confidence 9999999999 99999999986
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=509.34 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=247.9
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|.||..||++||||||+|||||.|++++.+.++.+.+++++.+. +||++|+++ . +.+.+++.+|.. + +.|||+
T Consensus 26 ~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~--vd~~~~~~~--~-~~~~~~~~~l~~-~-~~g~k~ 98 (344)
T cd01316 26 FASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKAR--CDYAFSIGA--T-STNAATVGELAS-E-AVGLKF 98 (344)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcE--EeEEEEeee--c-CCCHHHHHHHHh-c-cCeEEE
Confidence 45889999999999999999999999999999999988877665 999999876 3 334566777765 3 469999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMD 162 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~ 162 (329)
|+++.+ .....++ ...++.+.+..+.+.++.+|+|+. .+.+++ .+|+++|+|+||+|+||++
T Consensus 99 f~~~~~--~~~~~~~--~~~~~~~~~~~~~~~p~~~~~e~~------------~~~~~l--~la~~~g~~lhi~HiSt~~ 160 (344)
T cd01316 99 YLNETF--STLILDK--ITAWASHFNAWPSTKPIVTHAKSQ------------TLAAVL--LLASLHNRSIHICHVSSKE 160 (344)
T ss_pred EECCCC--CCCccch--HHHHHHHHHhcccCCCeEEehhhH------------HHHHHH--HHHHHHCCCEEEEeCCCHH
Confidence 986432 1222334 233344445545588999999865 467777 8999999999999999999
Q ss_pred HHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcc
Q 020186 163 AVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK 240 (329)
Q Consensus 163 sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK 240 (329)
++++|++||+ .+||||||||||+||++++.. +++|||||||+++||++||++| +.|| +|+||||||+.++|
T Consensus 161 ~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~----~~~k~~PPLR~~~dr~aL~~~l--~~id-~i~SDHaP~~~~~K 233 (344)
T cd01316 161 EINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR----GQYEVRPFLPTREDQEALWENL--DYID-CFATDHAPHTLAEK 233 (344)
T ss_pred HHHHHHHHHHCCCcEEEEechHHeeccHHHhhc----CCceeCCCCcCHHHHHHHHHHH--hcCC-EEEcCCCCCCHHHh
Confidence 9999999986 799999999999999999852 5899999999999999999999 4699 99999999999998
Q ss_pred cccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCCCcccEEEE--ecceeecCCccCcCCcccccC
Q 020186 241 ECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPRNTSKIKLT--KIPWKVPEAFSFSFGDIIPMF 317 (329)
Q Consensus 241 ~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~~dADlvi~--~~~~~v~~~~~~s~~~~spf~ 317 (329)
..+..++|++|+|+++|+|++.+++ +++|+++++++|+||||+|||+.+.+||+|| +++|+|+++.++|+++||||
T Consensus 234 ~~~~a~~G~~g~e~~lpl~~~~v~~~~i~l~~l~~~~s~nPAk~~gl~~~~~~lvi~d~~~~~~v~~~~~~s~~~~sp~- 312 (344)
T cd01316 234 TGNKPPPGFPGVETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYVEVDLDEEWTIPKNPLQSKKGWTPF- 312 (344)
T ss_pred cCCCCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCCCCCCEEEEeCCCcEEEChhhccccCCCCCC-
Confidence 7544557999999999999986554 7899999999999999999996545699999 59999999999999999999
Q ss_pred CCcEEEEEEee
Q 020186 318 AGNTLEWQPSL 328 (329)
Q Consensus 318 ~G~~l~G~v~~ 328 (329)
+|++++|||++
T Consensus 313 ~G~~l~G~v~~ 323 (344)
T cd01316 313 EGKKVKGKVQR 323 (344)
T ss_pred CCCEEeeEEEE
Confidence 99999999975
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=511.64 Aligned_cols=304 Identities=19% Similarity=0.241 Sum_probs=265.4
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..+|++||||||++||||.|++++.+.++.+.+++++.+. |||++|+++ + +. +++.++.+.| +.|||+
T Consensus 26 ~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~--vd~~~~~~~--~-~~--~~l~~~~~~~-~~g~k~ 97 (361)
T cd01318 26 FVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSV--VDYGLYFGV--T-GS--EDLEELDKAP-PAGYKI 97 (361)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCce--eEEEEEEee--c-Ch--hhHHHHHHhh-CcEEEE
Confidence 45788999999999999999999999999999999888876555 999999886 3 22 4566777667 569999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC---------------ChhHHHHHHHHHHHHHHHHh
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV---------------DIFDREKVFIDTILQPLIQR 147 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~---------------~~~~~E~~av~~~~~~~la~ 147 (329)
|+++. ++... .|+ ..|+++|++++ .++++||||+++.. .+..+|..+++|++ .+|+
T Consensus 98 f~~~~--~~~~~-~~~-~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~P~~aE~~av~r~~--~la~ 168 (361)
T cd01318 98 FMGDS--TGDLL-DDE-ETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESAHPRIRDAEAAAVATARAL--KLAR 168 (361)
T ss_pred EEecC--CCCcC-CCH-HHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhccCCCCcCCHHHHHHHHHHHH--HHHH
Confidence 98642 11222 344 89999999986 78999999987521 13578999999999 9999
Q ss_pred cCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE
Q 020186 148 LPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF 227 (329)
Q Consensus 148 ~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~ 227 (329)
++|+|+||+|+||++++++|+++| .+||||||||||+||++++. .+|+++||+||||+++||++||++|++|.|| +
T Consensus 169 ~~~~~~hi~Hvs~~~~~~~i~~~k-~~vt~ev~ph~L~l~~~~~~--~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id-~ 244 (361)
T cd01318 169 RHGARLHICHVSTPEELKLIKKAK-PGVTVEVTPHHLFLDVEDYD--RLGTLGKVNPPLRSREDRKALLQALADGRID-V 244 (361)
T ss_pred HHCCCEEEEeCCCHHHHHHHHHhC-CCeEEEeCHHHhhcCHHHHh--cCCCeEEEeCCCCCHHHHHHHHHHHhCCCCC-E
Confidence 999999999999999999999998 89999999999999999986 3688999999999999999999999999999 9
Q ss_pred EecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEE-
Q 020186 228 LGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLT- 296 (329)
Q Consensus 228 i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~- 296 (329)
|+|||+||+.++|..+| .++|++|+|+++|++++.+.+ +++++++++++|.||||+||++. | +|||+||
T Consensus 245 i~SDh~P~~~~~k~~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~~~~t~nPA~~lgl~~~G~i~~G~~ADlvv~d 324 (361)
T cd01318 245 IASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVD 324 (361)
T ss_pred EeeCCCCCCHHHccCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEe
Confidence 99999999999998665 346999999999999876554 68999999999999999999974 4 7999999
Q ss_pred -ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 297 -KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 297 -~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+++|+++.++++|+++|||| +|++++|||++
T Consensus 325 ~~~~~~v~~~~~~s~~~~tp~-~G~~l~G~v~~ 356 (361)
T cd01318 325 LKEERTIRAEEFHSKAGWTPF-EGFEVTGFPVM 356 (361)
T ss_pred CCCCEEECHHHccccCCCCCC-CCCEEeeEEEE
Confidence 69999999999999999999 99999999986
|
This group contains the archeal members of the DHOase family. |
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=518.26 Aligned_cols=289 Identities=18% Similarity=0.229 Sum_probs=243.6
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|.||..||++||||||+|||||.|++++.+.++.+.+++++.+. |||++|+++ . +.+ .+ +.+.| +.+||+
T Consensus 66 ~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~--vd~~~~~~~--~-~~~-~~---~~~~g-~~~~k~ 135 (409)
T PRK01211 66 FSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAY--VDFSLYSME--T-GNN-AL---ILDER-SIGLKV 135 (409)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhccCce--eeEEEEecc--C-Cch-hh---HHhcc-CcEEEE
Confidence 56889999999999999999999999999999999988877665 999999875 2 222 23 33447 469999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC---------------ChhHHHHHHHHHHHHHHHHh
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV---------------DIFDREKVFIDTILQPLIQR 147 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~---------------~~~~~E~~av~~~~~~~la~ 147 (329)
||++.+.+++..+ ..+.|++++++|.++++||||++++. .+..+|..++.+++ .+|+
T Consensus 136 f~~~~~~~~~~~~------~~~~l~~~~~~g~~v~~H~E~~~l~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~--~la~ 207 (409)
T PRK01211 136 YMGGTTNTNGTDI------EGGEIKKINEANIPVFFHAELSECLRKHQFESKNLRDHDLARPIECEIKAVKYVK--NLDL 207 (409)
T ss_pred EcCCCcCCCcccc------CHHHHHHHHccCCEEEEeccChHHhhhhhhCcchHhhCCCCCCHHHHHHHHHHHH--HHhC
Confidence 9864221211222 22466778899999999999987631 13578999999998 8888
Q ss_pred cCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE
Q 020186 148 LPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF 227 (329)
Q Consensus 148 ~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~ 227 (329)
+ ++||+|+||++++ .+||||||||||+||+++ . +++++|||||||+++||++||++|++|+|| +
T Consensus 208 ~---~~hi~HvSt~~~~--------~~vt~Ev~phhL~l~~~~-~---~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID-~ 271 (409)
T PRK01211 208 K---TKIIAHVSSIDVI--------GRFLREVTPHHLLLNDDM-P---LGSYGKVNPPLRDRWTQERLLEEYISGRFD-I 271 (409)
T ss_pred C---CcEEEEecChhhc--------CceEEEecHHHHcccccc-c---cCCceeEcCCCCCHHHHHHHHHHHhCCCCC-E
Confidence 7 6999999999998 279999999999999887 2 478999999999999999999999999999 9
Q ss_pred EecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEE--
Q 020186 228 LGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLT-- 296 (329)
Q Consensus 228 i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~-- 296 (329)
|+||||||+.++|. +| .++|++|+|+++|+||+.+++ +++++++++++|+||||+|||++| +||||||
T Consensus 272 i~SDHaP~~~~eK~-~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~kG~l~~G~~ADlvi~D~ 350 (409)
T PRK01211 272 LSSDHAPHTEEDKQ-EFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIKKGKIEEGYDADFMAFDF 350 (409)
T ss_pred EeCCCCCCChhHhC-CHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCcCCEEEEcC
Confidence 99999999999993 44 457999999999999976544 689999999999999999999644 8999999
Q ss_pred ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 297 KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 297 ~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+++|+|+.++++|+++|||| +|++++ +|.+
T Consensus 351 ~~~~~v~~~~~~s~~~~spf-~G~~~~-~v~~ 380 (409)
T PRK01211 351 TNIKKINDKRLHSKCPVSPF-NGFDAI-FPSH 380 (409)
T ss_pred CCeEEEChHHhhccCCCCCC-CCCEec-cEEE
Confidence 69999999999999999999 999987 7764
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=514.91 Aligned_cols=308 Identities=15% Similarity=0.130 Sum_probs=266.5
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K 81 (329)
|.|+..+|++||||||++|||+.|+.++.+.++.+..+.+..+. +|+.+++.++.+ .+.+++++.+|.+.|+ ++||
T Consensus 75 ~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~i~~l~~~G~-~~fk 151 (425)
T PRK07627 75 LESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQ--AHVYPLGALTVGLKGEVLTEMVELTEAGC-VGFS 151 (425)
T ss_pred HHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCc--eeEEEeCeEEcCCCccCHHHHHHHHhCCE-EEEE
Confidence 46889999999999999999999999998887777666554443 787667665433 3457889999998894 6999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~ 144 (329)
.|. ....|+ ..++++|++++++|+++++||||..+.. .+..+|..++.|++ .
T Consensus 152 ~~~--------~~~~~~-~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~--~ 220 (425)
T PRK07627 152 QAN--------VPVVDT-QVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIF--E 220 (425)
T ss_pred cCC--------cccCCH-HHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHH--H
Confidence 652 112344 7899999999999999999999986531 13478999999999 9
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
+|+++|+|+||+|+||++++++|+++|+ .+||||||||||+|+++++. .+++++|||||||+++||++||++|++|
T Consensus 221 la~~~~~~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~--~~~~~~k~~PPLR~~~d~~~L~~~l~~G 298 (425)
T PRK07627 221 LMRVTGARVHLARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIG--YFDSQFRLDPPLRSQRDREAIRAALADG 298 (425)
T ss_pred HHHHHCCcEEEEeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHh--ccCCceEEeCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986 79999999999999999986 3588999999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCCC------cccE
Q 020186 223 SRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPRN------TSKI 293 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~~------dADl 293 (329)
.|| +|+||||||+.++|..+|. ++|++|+|+.+|++++.+. ++++++++++++|.|||++||++.| +|||
T Consensus 299 ~id-~i~SDHaP~~~~~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~~~G~l~~G~~ADl 377 (425)
T PRK07627 299 TID-AICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGLPAGRLAEGAPADL 377 (425)
T ss_pred CCc-EEEcCCCCCCHHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCcCCE
Confidence 999 9999999999999986663 4699999999999886554 4789999999999999999999544 7999
Q ss_pred EEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 294 KLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 294 vi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
++| +++|+++.++++|+++|||| +|++++|+|++
T Consensus 378 vv~d~~~~~~v~~~~~~s~~~~sp~-~g~~~~g~v~~ 413 (425)
T PRK07627 378 CVFDPDAHWRVEPRALKSQGKNTPF-LGYELPGRVRA 413 (425)
T ss_pred EEECCCCcEEEChhhccccCCCCCC-cCCEeeeEEEE
Confidence 999 57899999999999999999 99999999865
|
|
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=495.16 Aligned_cols=310 Identities=65% Similarity=1.062 Sum_probs=258.9
Q ss_pred CccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccccccCCC
Q 020186 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQD 93 (329)
Q Consensus 14 GvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~~~~~~~ 93 (329)
++|++++|||+.|+.++.+.++.+.+++++.+...+||.++++++...+...+||+++.+.|+++|||+||++...+.+.
T Consensus 33 ~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~~~~~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~ 112 (345)
T PRK05451 33 QFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDNTDPDELERAKASGVVTAAKLYPAGATTNSDA 112 (345)
T ss_pred hcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEEeCCCCCHHHHHHHHHCCCEEEEEEecccCccCCcc
Confidence 39999999999999999999999888887653312799988887544334578999999889666999999752112223
Q ss_pred CccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhc-CCCeEEEEecCCHHHHHHHHcccC
Q 020186 94 GVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRL-PQLKVVMEHITTMDAVKFVESCKE 172 (329)
Q Consensus 94 ~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~-~~~~lhi~HvSt~~sl~~i~~ak~ 172 (329)
++.|+ ..++++|++++++|.++++||||.++.......|..++.+.+. .+|+. +|+|+||+|+||++++++|++|+
T Consensus 113 ~~~dd-~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~-~lA~~~pg~~lhI~Hlst~~~~e~i~~a~- 189 (345)
T PRK05451 113 GVTDI-EKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLE-PLRRRFPKLKIVFEHITTKDAVDYVREAN- 189 (345)
T ss_pred CcCCH-HHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHH-HHHHhcCCCcEEEEecCcHHHHHHHHhcC-
Confidence 44455 8999999999999999999999965422223446666766542 47844 49999999999999999999886
Q ss_pred CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE-EecCCCCCCcCcccccCCcCCccc
Q 020186 173 GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF-LGTDSAPHERGRKECACGCAGIYN 251 (329)
Q Consensus 173 ~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~-i~SDHaPh~~~eK~~~~~~~Gi~~ 251 (329)
.+||||||||||+||++++...++++++|||||||+++||++||++|++|.|| + |+||||||+.++|..++|.+|+++
T Consensus 190 ~~it~Et~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id-~~i~SDHaP~~~~~K~~~~G~~gi~~ 268 (345)
T PRK05451 190 DNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPK-FFLGTDSAPHARHAKESACGCAGIFS 268 (345)
T ss_pred CCEEEEecHHHHhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCC-EEEeCCCCCCChHHhCCCCCCCchhh
Confidence 79999999999999999875323578899999999999999999999999999 7 999999999999987777788888
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCCCcEEEEEEe
Q 020186 252 APVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 327 (329)
Q Consensus 252 ~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~ 327 (329)
.+..+|+++..++++++|++++++||+||||+|||+...+.|++.+++|+|+++.++|+++||||++|.+|+|+|.
T Consensus 269 ~~~g~~~~~~~~~~~~~l~~~v~~~s~nPAkifGl~~~KG~i~~~~~~~~v~~~~~~s~~~~sp~~~~~~~~~~~~ 344 (345)
T PRK05451 269 APAALELYAEVFEEAGALDKLEAFASLNGPDFYGLPRNTDTITLVREPWTVPESIPFGDETVVPFRAGETLRWSVK 344 (345)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhHHHHHHhCCCCCCCeEEEEecceecCcccccCCCceeeecCCceeeeEec
Confidence 7778899887776667999999999999999999943237788889999999999999999999999999999985
|
|
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=494.78 Aligned_cols=316 Identities=78% Similarity=1.242 Sum_probs=268.4
Q ss_pred hcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccccc
Q 020186 10 CSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATT 89 (329)
Q Consensus 10 Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~~~ 89 (329)
..+||||++++|||+.||+++.+.++.+++++++.+...+||.+|++++++++...+||.++.+.|++.+||+||.+..+
T Consensus 47 ~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~lt~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt 126 (364)
T PLN02599 47 HSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLTDNTTPEEIKAAKASGVVFAVKLYPAGATT 126 (364)
T ss_pred HhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEecCCCCCHHHHHHHHHCCCcEEEEECcccCcC
Confidence 46899999999999999999999999999998876221289999999866644568899999888954499999976544
Q ss_pred cCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHc
Q 020186 90 NSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVES 169 (329)
Q Consensus 90 ~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ 169 (329)
+++.++.|. +.++++|++++++|.++++||||.+...+....|...+.|++...+++++|+|+||+|+||++++++|++
T Consensus 127 ~s~~gv~d~-~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ 205 (364)
T PLN02599 127 NSQAGVTDL-GKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVES 205 (364)
T ss_pred CCccccCCH-HHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHh
Confidence 556677776 8999999999999999999999976533344557666777764358999999999999999999999999
Q ss_pred ccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCC-CeEEecCCCCCCcCcccccCCcCC
Q 020186 170 CKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR-KFFLGTDSAPHERGRKECACGCAG 248 (329)
Q Consensus 170 ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~I-d~~i~SDHaPh~~~eK~~~~~~~G 248 (329)
+|+.+|+||||||||+||++++..+++++++|||||||+++||++||+++.+|.| | +|+||||||+.++|+.++|.+|
T Consensus 206 ak~~~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~-~i~SDHaPh~~~~K~~~~g~~G 284 (364)
T PLN02599 206 CGDGNVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKF-FLGTDSAPHPKRAKEASCGCAG 284 (364)
T ss_pred ccCCCEEEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCE-EEecCCCCCChHHhcCCCCCCC
Confidence 8833899999999999999998643467889999999999999999999999996 8 9999999999999998888899
Q ss_pred ccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCCCcEEEEEEe
Q 020186 249 IYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 327 (329)
Q Consensus 249 i~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~ 327 (329)
+++.++.+|++++.+++.++|+++++++|.||||+||||+....|++.+++|+|.+.-..+.....||..|++|.++|+
T Consensus 285 i~~~~~~l~~l~~~~~~~g~l~~l~~~~S~npA~~~gL~~~kg~i~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~w~~~ 363 (364)
T PLN02599 285 IYSAPVALSLYAKAFEEAGALDKLEAFTSFNGPDFYGLPRNTSTITLVKSAWKVPEAYSFGGGTVVPMFAGETIPWSVV 363 (364)
T ss_pred cccHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHhCCCCCCCeEEEEECCccCCCEeecCCCeEeeecCCCeeeeeec
Confidence 9999999999888777655999999999999999999974347899889999997543323333779999999999986
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-67 Score=515.69 Aligned_cols=313 Identities=16% Similarity=0.156 Sum_probs=272.0
Q ss_pred eecccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K 81 (329)
+.++..+|++||||||+||| |+.|++++.+.++.+.+++++.+. |||.+|+++ . ..+.+++.+|.+.|+ .+||
T Consensus 73 ~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~--vd~~~~~~~--~-~~~~~ei~~l~~~gv-~~fk 146 (449)
T PRK08044 73 YETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLT--IDAAQLGGL--V-SYNLDRLHELDEVGV-VGFK 146 (449)
T ss_pred HHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCe--eeEEEEeee--C-CCCHHHHHHHHHcCc-eEEE
Confidence 45778999999999999999 788999999999998888776655 999999886 3 346889999998895 5999
Q ss_pred Eeeccccc---cCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHH
Q 020186 82 LYPAGATT---NSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFID 138 (329)
Q Consensus 82 ~f~~~~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~ 138 (329)
+||++... +++....++ ..++++|++++++|.++++||||.+++. .+..+|..++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~ 225 (449)
T PRK08044 147 CFVATCGDRGIDNDFRDVND-WQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIR 225 (449)
T ss_pred EEecccCcccccCCccCcCH-HHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHH
Confidence 99865211 112222344 7899999999999999999999987520 12468999999
Q ss_pred HHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHH
Q 020186 139 TILQPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 216 (329)
Q Consensus 139 ~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw 216 (329)
+++ .+|+++|+|+||+|+|+++++++++++|+ .++|||||||||+||++++.. +|+.+|||||||+++||++||
T Consensus 226 r~~--~lA~~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~--~~~~~k~~PPlr~~~d~~aL~ 301 (449)
T PRK08044 226 RVL--YLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE--IGTLAKCSPPIRDLENQKGMW 301 (449)
T ss_pred HHH--HHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhC--CCCcEEEcCCCCChHHHHHHH
Confidence 999 89999999999999999999999999886 799999999999999999863 588999999999999999999
Q ss_pred HHHHcCCCCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCCC-C--
Q 020186 217 SAVTSGSRKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLPR-N-- 289 (329)
Q Consensus 217 ~al~~G~Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~~-~-- 289 (329)
++|++|.|| +|+|||+||+.++|..++ .++|++|+|+.||++++.++ +.++++++++++|.||||+||+++ |
T Consensus 302 ~~l~~G~id-~i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~~~G~i 380 (449)
T PRK08044 302 EKLFNGEID-CLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRI 380 (449)
T ss_pred HHHhCCCce-EEEcCCCCCChHHccCChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCCCCcC
Confidence 999999999 999999999999997665 34699999999999986543 368999999999999999999963 3
Q ss_pred ----cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ----TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ----dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +++|+|++++++|+++|||| +|++++|||++
T Consensus 381 ~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~-~G~~l~G~v~~ 424 (449)
T PRK08044 381 APGKDADFVFIQPNSSYVLKNEDLEYRHKVSPY-VGRTIGARITK 424 (449)
T ss_pred CCCCccCEEEECCCCcEEECHHHccccCCCCCC-CCCEEeeeEEE
Confidence 7999999 68999999999999999999 99999999975
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-66 Score=499.65 Aligned_cols=296 Identities=17% Similarity=0.188 Sum_probs=253.3
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCC-ccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPAS-SNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~-vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K 81 (329)
|-|+..+|++||||||++||||.|++++.+.++.+.+++++. ..+ +||. .++ ..+.+.+++..+.+.|+ .+||
T Consensus 49 ~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~-~~~~~~~~i~~l~~~Gv-~~~k 122 (386)
T PRK08417 49 LKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQREL-PMQIFPSI---RAL-DEDGKLSNIATLLKKGA-KALE 122 (386)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhcc-CCcEEEEE---EEE-CCCccHHHHHHHHHCCC-EEEE
Confidence 358899999999999999999999999999998887776642 211 5552 232 33446889999998895 5888
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~ 144 (329)
++. .. +. ..++++|++++++|+++++||||.++.. .+..+|..++.|++ .
T Consensus 123 ~~~---------~~-~~-~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~--~ 189 (386)
T PRK08417 123 LSS---------DL-DA-NLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMK--E 189 (386)
T ss_pred CCC---------CC-CH-HHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHH--H
Confidence 641 12 33 7899999999999999999999976531 13478999999999 9
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
+|+++|+|+||+|+||++++++|+++|+ .+||||||||||+||++++. .+++++|||||||+++||++||++|++|
T Consensus 190 la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~--~~~~~~k~~PPlR~~~d~~~L~~~l~~g 267 (386)
T PRK08417 190 LAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLKEVSIHHLILDDSACE--NFNTAAKLNPPLRSKEDRLALLEALKEG 267 (386)
T ss_pred HHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEechHHHeeCHHHhc--CcCcccEECCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986 79999999999999999985 3678999999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHH-h-cCCHHHHHHHHhhhhhhhcCCCCC------ccc
Q 020186 223 SRKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFE-E-MGALDKLEAFTSFNGPDFYGLPRN------TSK 292 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~-~-~~~l~~~v~~~s~nPAkifgl~~~------dAD 292 (329)
+|| +|+||||||+.++|..+| .++|++|+|+++|++|+.++ . .++++++++++|.||||+||+++| +||
T Consensus 268 ~Id-~i~SDHaP~~~~~K~~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~G~l~~G~~AD 346 (386)
T PRK08417 268 KID-FLTSLHSAKSNSKKDLAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNSGEIEVGKEAD 346 (386)
T ss_pred Cce-EEEcCCCCCCHHHccCCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCCccCCCCcCC
Confidence 999 999999999999997665 45799999999999997543 3 579999999999999999999644 799
Q ss_pred EEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 293 IKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 293 lvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|++| +.+|+++. +|||| +|++++|+|.+
T Consensus 347 lvi~d~~~~~~~~~-------~~~p~-~g~~~~g~v~~ 376 (386)
T PRK08417 347 LVLFDPNESTIIDD-------NFSLY-SGDELYGKIEA 376 (386)
T ss_pred EEEEcCCCCeEeCC-------CCCCc-cCCEEeccEEE
Confidence 9999 57899984 69999 99999999865
|
|
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=514.08 Aligned_cols=314 Identities=17% Similarity=0.179 Sum_probs=265.1
Q ss_pred ecccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
-++..+|++|||||++||| |+.|+.++.+.++.+.+.+.+.+. +||++|.++.-....+.+++.++.+.|+ .+||+
T Consensus 120 ~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~--vd~~~~~~~~~~~~~~~~~l~~~~~~G~-~g~k~ 196 (505)
T PLN02795 120 PTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLY--VDVGFWGGLVPENAHNASVLEELLDAGA-LGLKS 196 (505)
T ss_pred HHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCce--eeeeceecccCcchhHHHHHHHHHHCCC-cEEEE
Confidence 3577889999999999999 678989999988877776655444 8999987652111134667888888885 58999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC------------------ChhHHHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV------------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~------------------~~~~~E~~av~~~~~~~ 144 (329)
||++.. ..+....++ ..++++|++++++|.++.+||||.+++. .+..+|.+++.+++ .
T Consensus 197 f~~~~~-~~~~~~~~~-~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~--~ 272 (505)
T PLN02795 197 FMCPSG-INDFPMTTA-THIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLL--E 272 (505)
T ss_pred EecccC-CCCcccCCH-HHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHH--H
Confidence 986421 122334455 8999999999999999999999987421 13468999999999 8
Q ss_pred HHhcC-------CCeEEEEecCCH-HHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHH
Q 020186 145 IQRLP-------QLKVVMEHITTM-DAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 214 (329)
Q Consensus 145 la~~~-------~~~lhi~HvSt~-~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~a 214 (329)
+|+.+ |+|+||+|+||+ +++++|+++|+ .+||||||||||+||++++. .+++++|||||||+++||++
T Consensus 273 la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~--~~~~~~k~~PPLR~~~d~~a 350 (505)
T PLN02795 273 VAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIP--DGDTRYKCAPPIRDAANREL 350 (505)
T ss_pred HHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHcc--CCCCceEEcCCCCChHHHHH
Confidence 99999 999999999999 99999999986 78999999999999999986 35899999999999999999
Q ss_pred HHHHHHcCCCCeEEecCCCCCCcCccccc---C--CcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 215 VVSAVTSGSRKFFLGTDSAPHERGRKECA---C--GCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 215 Lw~al~~G~Id~~i~SDHaPh~~~eK~~~---~--~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
||++|++|+|| +|+||||||+.++|..+ | .++|++|+|+++|++|+.+ ++.++++++++++|.||||+||+++
T Consensus 351 L~~al~~G~Id-~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l~~~v~~~s~~pA~~~gl~~ 429 (505)
T PLN02795 351 LWKALLDGDID-MLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWWSERPAKLAGLDS 429 (505)
T ss_pred HHHHHhCCCce-EEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999 99999999999999643 4 4579999999999999754 4468999999999999999999953
Q ss_pred -C------cccEEEE--ecceeecCCc-cCcCCc-ccccCCCcEEEEEEee
Q 020186 289 -N------TSKIKLT--KIPWKVPEAF-SFSFGD-IIPMFAGNTLEWQPSL 328 (329)
Q Consensus 289 -~------dADlvi~--~~~~~v~~~~-~~s~~~-~spf~~G~~l~G~v~~ 328 (329)
| +|||+|| +++|+|+.+. ++|+++ |||| +|++++|+|++
T Consensus 430 ~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~-~G~~l~g~v~~ 479 (505)
T PLN02795 430 KGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPY-LGTKLSGKVIA 479 (505)
T ss_pred CCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCC-CCeEEEeEEEE
Confidence 4 7999999 6899999875 799997 9999 99999999975
|
|
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=488.13 Aligned_cols=295 Identities=19% Similarity=0.193 Sum_probs=247.9
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-+++.+|++|||||+++|||+.|++++.+.+..+.+.+++.+. |||++|+ + . +.+.+++.++.+ + +||+
T Consensus 67 ~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~--vd~~~~~-~--~-~~~~~~l~~l~~-~---~~k~ 136 (398)
T PRK04250 67 IESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSY--ADYALNF-L--I-AGNCEKAEEIKA-D---FYKI 136 (398)
T ss_pred HHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcCce--eeEEEEE-e--c-CCCHHHHHHHHh-h---heEE
Confidence 45788999999999999999999999999999998888777655 9999998 5 3 345667887753 2 5899
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC----ChhHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV----DIFDREKVFIDTILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~----~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv 158 (329)
||.+ ++++ +.. +.+... .++.+.++++||||.++.. .+..+|..++.|++ .+|+++|+|+||+|+
T Consensus 137 f~~~--~~~~--~~~--~~~~~~---~~~~~~~v~~H~E~~~~~~~~~~~p~~aE~~av~r~~--~la~~~~~~lhi~Hv 205 (398)
T PRK04250 137 FMGA--STGG--IFS--ENFEVD---YACAPGIVSVHAEDPELIREFPERPPEAEVVAIERAL--EAGKKLKKPLHICHI 205 (398)
T ss_pred EEec--CCCc--hhH--HHHHHH---HHhcCCeEEEEecChhhhhcccCCCHHHHHHHHHHHH--HHHHHhCCCEEEEeC
Confidence 9854 1211 111 112211 2334667999999987642 24679999999999 999999999999999
Q ss_pred CCHHHHHHHHcccCCc-eEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCc
Q 020186 159 TTMDAVKFVESCKEGF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHER 237 (329)
Q Consensus 159 St~~sl~~i~~ak~~~-vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~ 237 (329)
||++++++|+++. .+ ||||||||||+||++++. +++++|||||||+++||++||++|. +|| +|+||||||+.
T Consensus 206 St~~~~~~i~~~g-~~~vt~Ev~ph~L~l~~~~~~---~~~~~k~~PPLR~~~d~~aL~~~l~--~Id-~i~sDHaP~~~ 278 (398)
T PRK04250 206 STKDGLKLILKSN-LPWVSFEVTPHHLFLTRKDYE---RNPLLKVYPPLRSEEDRKALWENFS--KIP-IIASDHAPHTL 278 (398)
T ss_pred CCHHHHHHHHHcC-CCcEEEEeCHHHhccCHHHHC---CCCceEEcCCCCCHHHHHHHHHhhc--cCC-EEEcCCcccCH
Confidence 9999999998643 55 999999999999999983 4789999999999999999999995 599 99999999999
Q ss_pred CcccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCC-C-----cccEEEE--ecceeecCCccC
Q 020186 238 GRKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPR-N-----TSKIKLT--KIPWKVPEAFSF 308 (329)
Q Consensus 238 ~eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~-~-----dADlvi~--~~~~~v~~~~~~ 308 (329)
++|.. +.+|++|+|+++|+||+.++ ++++++++++++|.||||+||+++ | +|||+|| +++|+++.++++
T Consensus 279 ~~k~~--~~~G~~g~e~~lpl~~~~v~~~~lsl~~~v~~~t~npAk~lgl~~~GL~~G~~ADlvi~D~~~~~~v~~~~~~ 356 (398)
T PRK04250 279 EDKEA--GAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKNYGIEEGNYANFAVFDMKKEWTIKAEELY 356 (398)
T ss_pred HHhhc--CCCCcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCcCccCCCcCCEEEEcCCCcEEEChhhcc
Confidence 99963 45799999999999997654 478999999999999999999963 2 7999999 689999999999
Q ss_pred cCCcccccCCCcEEEEEEee
Q 020186 309 SFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 309 s~~~~spf~~G~~l~G~v~~ 328 (329)
|+++|||| +|++++|+|.+
T Consensus 357 s~~~~sp~-~g~~l~g~v~~ 375 (398)
T PRK04250 357 TKAGWTPY-EGFKLKGKVIM 375 (398)
T ss_pred ccCCCCCC-CCCEEeeEEEE
Confidence 99999999 99999999864
|
|
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-64 Score=485.26 Aligned_cols=281 Identities=15% Similarity=0.166 Sum_probs=231.3
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|.||..||++||||||++||||.|++++.+.++.+.+++++.+. |||++|+++ + .+.+++.++ | +.|||+
T Consensus 67 ~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~~~~--vd~~~~~~~--~--~~~~el~~~---~-~~g~k~ 136 (392)
T PRK00369 67 VASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEYYSR--VDYFVYSGV--T--KDPEKVDKL---P-IAGYKI 136 (392)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCCe--EEEEEEeec--c--CCHHHHHHh---h-CceEEE
Confidence 56899999999999999999999999999999999998877665 999999865 3 234455544 6 469999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC------ChhHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV------DIFDREKVFIDTILQPLIQRLPQLKVVME 156 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~------~~~~~E~~av~~~~~~~la~~~~~~lhi~ 156 (329)
|+.. ..+. ..+.++ .+.+.++++||||++++. .+..+|..++.++. .+ +|+||+
T Consensus 137 f~~~--------~~~~-~~~~~~----~~~~~~v~~HaE~~~l~~~~~~~~rp~~aE~~ai~~~~--~~-----~~lhi~ 196 (392)
T PRK00369 137 FPED--------LERE-ETFRVL----LKSRKLKILHPEVPLALKSNRKLRRNCWYEIAALYYVK--DY-----QNVHIT 196 (392)
T ss_pred ECCC--------CchH-HHHHHH----HHhCCEEEEeCCCHHHhhcchhcccCHHHHHHHHHHHH--Hh-----CCEEEE
Confidence 9521 1332 334333 344489999999987632 12467888877765 44 899999
Q ss_pred ecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCC
Q 020186 157 HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHE 236 (329)
Q Consensus 157 HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~ 236 (329)
|+||+++++.+|+ ..||||||||||+||+++ ++++|||||||+++||++||++|++ || +|+||||||+
T Consensus 197 HvSt~~~v~~ak~---~gvt~Ev~pHhL~l~~~~------~~~~k~~PPLR~~~dr~aL~~~l~~--id-~i~SDHaP~~ 264 (392)
T PRK00369 197 HASNPRTVRLAKE---LGFTVDITPHHLLVNGEK------DCLTKVNPPIRDINERLWLLQALSE--VD-AIASDHAPHS 264 (392)
T ss_pred ECCCHHHHHHHHH---CCCeEEechhHheeccCC------CCceEEeCCCCCHHHHHHHHHHHHh--CC-EEEeCCCCCC
Confidence 9999999876543 359999999999999752 5689999999999999999999998 99 9999999999
Q ss_pred cCcccccCC--cCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe-cceeecCCc
Q 020186 237 RGRKECACG--CAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK-IPWKVPEAF 306 (329)
Q Consensus 237 ~~eK~~~~~--~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~-~~~~v~~~~ 306 (329)
.++|..+|. ++|++|+|+++|++|+.+. +.++++++++++|.||||+||++.+ +|||+||| ++|++ +.
T Consensus 265 ~~~K~~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v~~~s~nPA~ilgl~~g~i~~G~~ADlvi~d~~~~~~--~~ 342 (392)
T PRK00369 265 SFEKLQPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELISTNPARILGIPYGEIKEGYRANFTVIQFEDWRY--ST 342 (392)
T ss_pred HHHccCCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCccCCCCccCEEEEeCCceeE--cc
Confidence 999976663 5699999999999997544 4789999999999999999999643 79999994 58886 56
Q ss_pred cCcCCcccccCCCcEEEEEEee
Q 020186 307 SFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 307 ~~s~~~~spf~~G~~l~G~v~~ 328 (329)
++|+++|||| +|++++|+|.+
T Consensus 343 ~~sk~~~sp~-~G~~l~G~v~~ 363 (392)
T PRK00369 343 KYSKVIETPL-DGFELKASVYA 363 (392)
T ss_pred ccccCCCCCC-CCCEeeeEEEE
Confidence 7999999999 99999999975
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=489.67 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=265.4
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCH-HHHHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSP-DEIKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~-~el~~l~~~G~v~~~K~ 82 (329)
-++..+|++|||||+++||++.|+.++.+.++.+.+.+++.+. +||++|++++.+..... +++.++.+.|+ .+||+
T Consensus 78 ~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~--vd~~~~~~~~~~~~~~~~~~v~~l~~~G~-~~iKi 154 (477)
T PRK13404 78 YTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAV--IDYAFHLIVADPTEEVLTEELPALIAQGY-TSFKV 154 (477)
T ss_pred HHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcE--EEEEEEEEecCCChhhHHHHHHHHHHcCC-CEEEE
Confidence 4667889999999999999988888888888888777665444 89999987632222223 57888988895 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
|+++ ++..+++ ..+++++++++++|.+|++||||.+++. .+..+|..++.+++
T Consensus 155 ~~~~----~~~~~~~--~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~- 227 (477)
T PRK13404 155 FMTY----DDLKLDD--RQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAI- 227 (477)
T ss_pred EecC----CCCCCCH--HHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHH-
Confidence 9852 1233444 7899999999999999999999977531 12468999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+++|+|+||+|+||++++++|+++|+ .+||||||||||+||++++.... +|+.+|||||||+++||++||++|
T Consensus 228 -~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l 306 (477)
T PRK13404 228 -ALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGL 306 (477)
T ss_pred -HHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHHHH
Confidence 99999999999999999999999999987 78999999999999999985311 578999999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCcc--------cccC--CcCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCC-
Q 020186 220 TSGSRKFFLGTDSAPHERGRK--------ECAC--GCAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGL- 286 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK--------~~~~--~~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl- 286 (329)
++|.|| +|+|||+||+.++| ..+| .++|++|+|+.+|++++.+ . +.++++++++++|.||||+||+
T Consensus 307 ~~G~id-~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 307 ADGTFE-VFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLY 385 (477)
T ss_pred hCCCce-EEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 999999 99999999999888 2244 3469999999999999653 3 3689999999999999999999
Q ss_pred CC-C------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 287 PR-N------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 287 ~~-~------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
++ | +|||+|| +.+|+|++++++++++|||| +|++++|+|++
T Consensus 386 ~~~G~i~~G~~ADlvivd~~~~~~v~~~~~~~~~~~sp~-~g~~~~g~v~~ 435 (477)
T PRK13404 386 PRKGAIAIGADADIAIWDPDREVTITNADLHHAADYTPY-EGMRVTGWPVT 435 (477)
T ss_pred CCCceecCCCcCCEEEEcCCccEEEchHHhcccCCCCcc-cceEEeeeEEE
Confidence 54 3 7999999 68999999999999999999 99999999975
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=484.65 Aligned_cols=312 Identities=17% Similarity=0.174 Sum_probs=268.4
Q ss_pred eecccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K 81 (329)
|.++..+|++||+||+++|| |+.|+.++.+.+..+.+.++..+. +||.+|.++ . ..+.++|..|.+.|+ .+||
T Consensus 74 ~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~--~-~~~~~~l~~l~~~Gv-~~~k 147 (451)
T PRK06189 74 FATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSA--VDFALWGGL--V-PGNLEHLRELAEAGV-IGFK 147 (451)
T ss_pred HHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCce--EeEEEEecc--c-ccCHHHHHHHHHcCC-cEEE
Confidence 34677899999999999999 788999999988888887766554 899998764 3 345789999998995 6999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTIL 141 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~ 141 (329)
+||.+. +..+....++ ..++++|++++++|.++++||||++++. .+..+|..++.+++
T Consensus 148 ~f~~~~-~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l 225 (451)
T PRK06189 148 AFMSNS-GTDEFRSSDD-LTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRAL 225 (451)
T ss_pred EEcccc-CCCCcCcCCH-HHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHH
Confidence 998542 1122334555 8999999999999999999999987421 12467999999999
Q ss_pred HHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHH
Q 020186 142 QPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 142 ~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+++|+|+||+|+||++++++|+++|+ .++|||||||||+||++++.. +++.+||+||||+++||++||++|
T Consensus 226 --~la~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~--~~~~~~~~Pplr~~~~~~~L~~~l 301 (451)
T PRK06189 226 --LYAQETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER--IGAVAKCAPPLRSRSQKEELWRGL 301 (451)
T ss_pred --HHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC--cCCceEEeCCCCChhhHHHHHHHH
Confidence 89999999999999999999999999886 789999999999999999863 578999999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCccc-ccC--CcCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCCCC-C----
Q 020186 220 TSGSRKFFLGTDSAPHERGRKE-CAC--GCAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGLPR-N---- 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~-~~~--~~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl~~-~---- 289 (329)
.+|.|| +|+|||+||+.++|. .++ .++|++|+|+++|++++.. . +.++++++++++|.||||+||+++ |
T Consensus 302 ~~G~i~-~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~~~G~l~~ 380 (451)
T PRK06189 302 LAGEID-MISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLPQKGRLEV 380 (451)
T ss_pred hCCCce-EEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCCCCCcccC
Confidence 999999 999999999999886 344 3469999999999999643 3 468999999999999999999963 4
Q ss_pred --cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 --TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 --dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +++|++++++++|+++|||| +|++++|+|.+
T Consensus 381 G~~ADlvi~d~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~v~~ 422 (451)
T PRK06189 381 GADADFVLVDLDETYTLTKEDLFYRHKQSPY-EGRTFPGRVVA 422 (451)
T ss_pred CCcCCEEEEcCCCCEEECHHHhhhcCCCCCc-CCcEEEeEEEE
Confidence 7999999 47999999999999999999 99999999975
|
|
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-62 Score=479.94 Aligned_cols=307 Identities=17% Similarity=0.199 Sum_probs=259.4
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh-cCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK-TGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~-~G~v~~~K 81 (329)
+-|+..+|++|||||+++|||+.|+.++.+.+..+.+++++.+. +||+++++. . ..+.+++.++.. .| +.+||
T Consensus 76 ~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~--~-~~~~~~l~el~~~~g-v~g~k 149 (444)
T PRK09060 76 LETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMH--CDFAFYVGG--T-RDNADELAELERLPG-CAGIK 149 (444)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccce--eeEEEEecc--C-CCCHHHHHHHHhhcC-ceEEE
Confidence 34677899999999999999999999999999888887766555 999999865 2 223456666643 36 46999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~ 144 (329)
+||.+. .+...+.|. ..+++++++. |.++++||||.+++. .+..+|..+++|++ .
T Consensus 150 ~fm~~~--~~~~~~~d~-~~l~~~~~~~---~~~v~~H~E~~~l~~~~~~~~~~g~~~~~~~~~p~~aE~~av~~~~--~ 221 (444)
T PRK09060 150 VFMGSS--TGDLLVEDD-EGLRRILRNG---RRRAAFHSEDEYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLV--R 221 (444)
T ss_pred EEeccC--CCCcccCCH-HHHHHHHHhC---CCeEEEECCCHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHH--H
Confidence 998532 222335565 6777777554 889999999976421 13468999999999 9
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhh-hcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNA-LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 223 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~-~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~ 223 (329)
+|+.+|+|+||+|+||++++++|+++| ..+|||||||||+|++++ +. ++++++|||||||+++||++||+++++|.
T Consensus 222 la~~~~~~lhi~h~st~~~v~~i~~~~-~~vt~ev~ph~l~l~~~~~~~--~~~~~~k~~PPlr~~~~~~~l~~al~~G~ 298 (444)
T PRK09060 222 LARETGRRIHVLHVSTAEEIDFLADHK-DVATVEVTPHHLTLAAPECYE--RLGTLAQMNPPIRDARHRDGLWRGVRQGV 298 (444)
T ss_pred HHHHHCCCEEEEeCCCHHHHHHHHHhC-CCeEEEeChHHhccCchhhcc--cCCceEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999987 469999999999999988 54 36889999999999999999999999999
Q ss_pred CCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCC-C------cccE
Q 020186 224 RKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPR-N------TSKI 293 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~-~------dADl 293 (329)
|| +|+|||+||+.++|..+| .++|++|+|+++|+|++.+. ++++++++++++|.||||+||+++ | +|||
T Consensus 299 id-~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~gl~~~G~l~~G~~ADl 377 (444)
T PRK09060 299 VD-VLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIFGIAGKGRIAVGYDADF 377 (444)
T ss_pred cc-EEecCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCcccCCCcCCE
Confidence 99 999999999999997665 35699999999999997654 468999999999999999999953 4 7999
Q ss_pred EEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 294 KLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 294 vi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|| +++|+|+.++++|+++|||| +|++++|+|++
T Consensus 378 vl~d~~~~~~v~~~~~~s~~~~sp~-~g~~l~g~~~~ 413 (444)
T PRK09060 378 TIVDLKRRETITNEWIASRCGWTPY-DGKEVTGWPVG 413 (444)
T ss_pred EEEcCCCCEEEChHHhcccCCCCCC-CCCEEeeeEEE
Confidence 999 68999999999999999999 99999999875
|
|
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-62 Score=468.67 Aligned_cols=309 Identities=21% Similarity=0.244 Sum_probs=268.9
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCC-CCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTD-TTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~-~~~~~el~~l~~~G~v~~~K 81 (329)
+.|+..+|++||||||++|||+.|+.++.+.++.+++.+++.+. +||.+|++++.+. +.++++|.+|.+.|+ ++||
T Consensus 34 ~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~G~-~~~k 110 (374)
T cd01317 34 LESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGI--VRVLPIGALTKGLKGEELTEIGELLEAGA-VGFS 110 (374)
T ss_pred HHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCc--eeEEEEEEEeeCCCcccHHHHHHHHHCCc-EEEE
Confidence 45889999999999999999999999999999888888776544 7999998874332 224789999998895 6999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~ 144 (329)
.|. ....|+ ..++++|++++++|.++++||||.++.. .+..+|..++.+++ .
T Consensus 111 ~~~--------~~~~~~-~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~--~ 179 (374)
T cd01317 111 DDG--------KPIQDA-ELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVASRLGLPGIPPEAETIMVARDL--E 179 (374)
T ss_pred cCC--------cCCCCH-HHHHHHHHHHHhcCCeEEEecCChhhhhccCccCChhhHHhCCCCCCHHHHHHHHHHHH--H
Confidence 642 122344 8899999999999999999999987631 12467888999999 8
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
+|+++|+|+||+|+|+++++++++++|+ ..+++|||||||+||++++.. +++++||+||||+++++++||+++.+|
T Consensus 180 la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~--~~~~~k~~Pplr~~~~~~~l~~~~~~G 257 (374)
T cd01317 180 LAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES--YDTNAKVNPPLRSEEDREALIEALKDG 257 (374)
T ss_pred HHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhc--cCCceEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986 789999999999999999863 578999999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHH-h-cCCHHHHHHHHhhhhhhhcCCCCC------ccc
Q 020186 223 SRKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFE-E-MGALDKLEAFTSFNGPDFYGLPRN------TSK 292 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~-~-~~~l~~~v~~~s~nPAkifgl~~~------dAD 292 (329)
.|| +|+|||+||+.++|..+| +++|++|+|+.+|++++.+. . .++++++++++|.||||+||++.| +||
T Consensus 258 ~i~-~igsDh~p~~~~~k~~~~~~~~~Gi~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~lgl~~G~l~~G~~AD 336 (374)
T cd01317 258 TID-AIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLPPGRLEVGAPAD 336 (374)
T ss_pred Cce-EEEcCCCCCCHHHccCCHhhCCCcHhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCcCC
Confidence 999 999999999998887664 56799999999999987553 3 569999999999999999999543 799
Q ss_pred EEEE--ecceeecCCccCcCCcccccCCCcEEEEEEeeC
Q 020186 293 IKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSLI 329 (329)
Q Consensus 293 lvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~~ 329 (329)
|++| +++|+++.++++|+++|||| +|++++|+|++.
T Consensus 337 lvi~d~~~~~~~~~~~~~s~~~~sp~-~G~~l~g~~~~t 374 (374)
T cd01317 337 LVLFDPDAEWIVDEETFRSKSKNTPF-DGQKLKGRVLAT 374 (374)
T ss_pred EEEECCCCCEEEChhhccccCCCCCC-CCCEEeEEEEEC
Confidence 9999 68999999999999999999 999999999863
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=476.39 Aligned_cols=305 Identities=21% Similarity=0.219 Sum_probs=257.8
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEe
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
-++..+|++|||||++||||+.|++++.+.+..+.+++++.+. +||++|+++ . +.+++++..+. | +.+||.|
T Consensus 77 ~~~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~--v~~~~~~~~--~-~~~l~~l~~~~--~-~~g~~~f 148 (438)
T PRK07575 77 FTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCV--VNYGFFIGA--T-PDNLPELLTAN--P-TCGIKIF 148 (438)
T ss_pred HHHHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcE--EEEEEEccc--c-ccCHHHHHHhh--C-CeEEEEE
Confidence 4667799999999999999999999999999888887766554 999999875 3 34566666542 4 4699999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC------------------ChhHHHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV------------------DIFDREKVFIDTILQPLI 145 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~------------------~~~~~E~~av~~~~~~~l 145 (329)
+... .++..+.+. ..+++.+ ++.|.++++||||.+++. .+..+|.+++.+++ .+
T Consensus 149 ~~~~--~~~~~~~~~-~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~~~g~~~~~~~~~~~p~~aE~~av~~~~--~l 220 (438)
T PRK07575 149 MGSS--HGPLLVDEE-AALERIF---AEGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQDEEAALLATRLAL--KL 220 (438)
T ss_pred EeeC--CCCcccCcH-HHHHHHH---HhCCCEEEEeCcChHHHHhhhHhhccCcCcccccccCcHHHHHHHHHHHH--HH
Confidence 8531 122334453 4555544 456899999999987421 12468999999999 99
Q ss_pred HhcCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC
Q 020186 146 QRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK 225 (329)
Q Consensus 146 a~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id 225 (329)
|+++|+|+||+|+||++++++++++|..++|||||||||+||++++.. +++++|||||||+++||++||++|++|.||
T Consensus 221 a~~~g~~lhi~HiSt~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~~--~~~~~k~~PPLR~~~d~~~L~~~l~~G~id 298 (438)
T PRK07575 221 SKKYQRRLHILHLSTAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYER--IGTLAQMNPPLRSPEDNEALWQALRDGVID 298 (438)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHhcCCCEEEEEchhhheeCHHHHhC--CCceEEEeCCCCCHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999875679999999999999999863 578999999999999999999999999999
Q ss_pred eEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCC-C------cccEEE
Q 020186 226 FFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPR-N------TSKIKL 295 (329)
Q Consensus 226 ~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi 295 (329)
+|+|||+||+.++|..+|. ++|++|+|+.+|++++.+.+ +++++++++++|.||||+||+++ | +|||+|
T Consensus 299 -~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk~lgl~~~G~L~~G~~ADlvi 377 (438)
T PRK07575 299 -FIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL 377 (438)
T ss_pred -EEecCCCCCCHHHccCCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHcCCCCCCccCCCCcCCEEE
Confidence 9999999999999987764 36999999999999976544 68999999999999999999963 4 799999
Q ss_pred E--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 296 T--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 296 ~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
| +++|+++.++++|+++|||| +|++++|+|.+
T Consensus 378 ~D~~~~~~v~~~~~~s~~~~sp~-~g~~~~G~v~~ 411 (438)
T PRK07575 378 VDLNTYRPVRREELLTKCGWSPF-EGWNLTGWPVT 411 (438)
T ss_pred EcCCCCEEEchHHccccCCCCCC-CCCEEeeEEEE
Confidence 9 58999999999999999999 99999999964
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=469.29 Aligned_cols=309 Identities=22% Similarity=0.294 Sum_probs=266.7
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K~ 82 (329)
-++..+|++|||||+++|||+.|+.++.+.++.+.+.+++.+. |||.++++++.. .+..++++.+|.+.|+ ++ |+
T Consensus 60 ~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~--vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv-~g-~~ 135 (411)
T TIGR00857 60 ESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSL--VDVHLYGGVTQGNQGKELTEAYELKEAGA-VG-RM 135 (411)
T ss_pred HHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCc--ccEEEEEEEecCCccccHHHHHHHHHCCc-EE-EE
Confidence 3567889999999999999999999999999888887766555 999999988532 1224778888888885 57 55
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPLI 145 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~l 145 (329)
|..+ +....+. ..++++|++++++|.++++||||+++.. .+..+|..++.+++ .+
T Consensus 136 f~~~-----~~~~~~~-~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~--~l 207 (411)
T TIGR00857 136 FTDD-----GSEVQDI-LSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLL--EL 207 (411)
T ss_pred EEeC-----CcccCCH-HHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHH--HH
Confidence 5422 1122344 8999999999999999999999987531 13578999999999 89
Q ss_pred HhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC
Q 020186 146 QRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 223 (329)
Q Consensus 146 a~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~ 223 (329)
|+++|+|+||+|+||++++++|+++|+ .+||||||||||+||++++.. +++++|||||||+++||++||++|++|.
T Consensus 208 a~~~~~~~~i~Hvs~~~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~--~~~~~k~~Pplr~~~~~~~L~~~l~~g~ 285 (411)
T TIGR00857 208 AKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDVAR--LDGNGKVNPPLREKEDRLALIEGLKDGI 285 (411)
T ss_pred HHHHCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEeechhhheecHHHHhC--CCccEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 789999999999999999863 5789999999999999999999999999
Q ss_pred CCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCC-C------cccE
Q 020186 224 RKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPR-N------TSKI 293 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~-~------dADl 293 (329)
|| +|+|||+||+.++|..++ .++|++|+|+.+|++++.+++ .++++++++++|.|||++||++. | +|||
T Consensus 286 i~-~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~G~l~~G~~ADl 364 (411)
T TIGR00857 286 ID-IIATDHAPHTLEEKTKEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADI 364 (411)
T ss_pred Cc-EEEcCCCCCChHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCCCccCCCCcCCE
Confidence 99 999999999999987655 457999999999999976654 68999999999999999999964 4 6999
Q ss_pred EEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 294 KLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 294 vi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|| +..|+++.++++++++|||| +|++++|+|.+
T Consensus 365 vi~d~~~~~~~~~~~~~~~~~~sp~-~g~~~~g~v~~ 400 (411)
T TIGR00857 365 TVFDLKKEWTINAETFYSKAKNTPF-EGMSLKGKPIA 400 (411)
T ss_pred EEEcCCCCEEEchHHCccCCCCCCc-CCCEEEeEEEE
Confidence 999 68899999999999999999 99999999865
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=467.67 Aligned_cols=304 Identities=20% Similarity=0.248 Sum_probs=260.6
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEE-E
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV-K 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~-K 81 (329)
|.++..+|++|||||+++|||+.|+.++.+.++.+.+.+++.+. +||.++++. ..+.+++.+|.+.|+ .++ |
T Consensus 74 ~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~--v~~~~~~~~----~~~~~~l~~l~~~gv-~~~gk 146 (443)
T PRK02382 74 WYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSI--VDFGINGGV----TGNWDPLESLWERGV-FALGE 146 (443)
T ss_pred HHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCce--EEEEEEeee----ccchhhHHHHHhcCc-cceeE
Confidence 45778899999999999999999999999988887777665444 899998764 234677888888885 588 9
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC------------------ChhHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV------------------DIFDREKVFIDTILQP 143 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~------------------~~~~~E~~av~~~~~~ 143 (329)
+|+.+. .++..+++ ..++++|++++++|.++++||||.++.. .+..+|..++.+++
T Consensus 147 v~~~~~--~~~~~~~~--~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~-- 220 (443)
T PRK02382 147 IFMADS--TGGMGIDE--ELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERAL-- 220 (443)
T ss_pred EEEEec--CCCcccCH--HHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHH--
Confidence 998532 12333444 7899999999999999999999976420 12478999999999
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 223 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~ 223 (329)
.+|+++|+|+||+|+||++++++|+++| ||||||||||+||++++. .+++++|||||||+++||++||++|++|.
T Consensus 221 ~la~~~g~~~hi~h~ss~~~~~~i~~~~---vt~ev~ph~L~l~~~~~~--~~~~~~k~~PPlr~~~d~~aL~~~l~~g~ 295 (443)
T PRK02382 221 EVASETGARIHIAHISTPEGVDAARREG---ITCEVTPHHLFLSRRDWE--RLGTFGKMNPPLRSEKRREALWERLNDGT 295 (443)
T ss_pred HHHHHhCCCEEEEECCCHHHHHHHHHCC---cEEEEchhhhhcCHHHHh--ccCceEEEcCCCCChHHHHHHHHHHhCCC
Confidence 9999999999999999999999999874 999999999999999986 35789999999999999999999999999
Q ss_pred CCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCC-C------cccE
Q 020186 224 RKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPR-N------TSKI 293 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~-~------dADl 293 (329)
|| +|+|||+||+.++|..++. ++|++|+|+++|++++.+++ +++++++++++|.|||++||++. | +|||
T Consensus 296 i~-~i~sDh~P~~~~~K~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g~~~~G~l~~G~~AD~ 374 (443)
T PRK02382 296 ID-VVASDHAPHTREEKDADIWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLDGKGRIAEGYDADL 374 (443)
T ss_pred CC-EEEcCCCCCCHHHhcCChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCE
Confidence 99 9999999999999987653 46999999999999976554 78999999999999999999953 3 7999
Q ss_pred EEE--ecceeecCCccCcCCcccccCCCcEEEEEEe
Q 020186 294 KLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 327 (329)
Q Consensus 294 vi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~ 327 (329)
+|| +..|+++.+.++|+++|||| +|+++. +|.
T Consensus 375 vi~d~~~~~~~~~~~~~s~~~~sp~-~g~~~~-~v~ 408 (443)
T PRK02382 375 VLVDPDAAREIRGDDLHSKAGWTPF-EGMEGV-FPE 408 (443)
T ss_pred EEEcCCCcEEEcHHHhcccCCCCCc-CCCEec-eEE
Confidence 999 58999999999999999999 998765 544
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=456.42 Aligned_cols=311 Identities=17% Similarity=0.169 Sum_probs=265.9
Q ss_pred ecccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
-++..+|++|||||++||| |+.|+.++.+.++.+.+.+++.+. +||++|++. . ..+.+++.++.+.|+ .+||+
T Consensus 72 ~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~--~-~~~~~~i~~~~~~G~-~~ik~ 145 (443)
T TIGR03178 72 ETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLA--VDVGFWGGL--V-PYNLDDLRELDEAGV-VGFKA 145 (443)
T ss_pred HHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCc--eeEEEEecc--C-CCCHHHHHHHHHCCC-cEEEE
Confidence 4567889999999999999 788999999988888777665444 899998764 2 456788999998895 59999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
||++. +.++....+. ..++++|+++++.|.++++|||+.++.. .+..+|..++.+++
T Consensus 146 ~~~~~-~~~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~- 222 (443)
T TIGR03178 146 FLSPS-GDDEFPHVDD-WQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTL- 222 (443)
T ss_pred Eeccc-CCCCcccCCH-HHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHH-
Confidence 98642 2222233444 8899999999999999999999986421 12467899999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
.+|+++|+|+|++|+|+.+++++++++|+ .++|+|||||||+|+++++.. .++.+||+||||+++||++||++|+
T Consensus 223 -~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~--~~~~~~~~Pplr~~~~~~~l~~~l~ 299 (443)
T TIGR03178 223 -ALAKVTGCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPD--GGTLAKCAPPIRDLANQEGLWEALL 299 (443)
T ss_pred -HHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhhC--cCcceEEcCCCCChHHHHHHHHHHH
Confidence 89999999999999999999999999986 789999999999999999863 5789999999999999999999999
Q ss_pred cCCCCeEEecCCCCCCcCcc-cccC--CcCCccchhHHHHHHHHHH--HhcCCHHHHHHHHhhhhhhhcCCCC-C-----
Q 020186 221 SGSRKFFLGTDSAPHERGRK-ECAC--GCAGIYNAPVALSLYAKVF--EEMGALDKLEAFTSFNGPDFYGLPR-N----- 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK-~~~~--~~~Gi~~~e~~lpll~~~~--~~~~~l~~~v~~~s~nPAkifgl~~-~----- 289 (329)
+|.|| +|+|||+||+.++| ..+| .++|++|+|+.+|++++.. .++++++++++++|.||||+||+++ |
T Consensus 300 ~G~i~-~i~SDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~~~G~l~~G 378 (443)
T TIGR03178 300 NGLID-CVVSDHSPCTPDLKRAGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLAQKGRIAPG 378 (443)
T ss_pred cCCcc-EEeCCCCCCChHHcCcCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCCccCCC
Confidence 99999 99999999999998 4444 3469999999999998654 3478999999999999999999953 3
Q ss_pred -cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 -TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 -dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +++|+++++.++|+++|||| +|++++|+|.+
T Consensus 379 ~~Ad~vi~d~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~v~~ 419 (443)
T TIGR03178 379 KDADFVFVDPDESYTLTPDDLYYRHKVSPY-VGRTIGGRVRA 419 (443)
T ss_pred CcCCEEEEcCCCcEEEcHHHhhhcCCCCCc-CCcEEeeEEEE
Confidence 7999999 47999999999999999999 99999999975
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-57 Score=442.92 Aligned_cols=307 Identities=19% Similarity=0.198 Sum_probs=261.4
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEe
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
-|+..+|++||||||+||||+.|+.++.+.+..+.+.+++.+. +||++|+++ . +.+.+++.+|.+.| +.+||+|
T Consensus 75 ~~~~~aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~--~-~~~~~e~~~l~~~g-~~g~k~~ 148 (444)
T PRK09236 75 ASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSL--ANYSFYFGA--T-NDNLDEIKRLDPKR-VCGVKVF 148 (444)
T ss_pred HHHHHHHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeE--EEEEEEecc--C-cccHHHHHHHHHcc-CcEEEEE
Confidence 3677899999999999999999999999999888887665544 899999764 2 44688899998888 4699999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC----------C------------hhHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV----------D------------IFDREKVFIDTIL 141 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~----------~------------~~~~E~~av~~~~ 141 (329)
+.+. .+..++.+. ..++++++ ..|.++++||||.+++. + +..+|..++.+++
T Consensus 149 ~~~~--~~~~~~~~~-~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~ 222 (444)
T PRK09236 149 MGAS--TGNMLVDNP-ETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAV 222 (444)
T ss_pred eccC--CCCcccCcH-HHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHH
Confidence 8642 223345554 55666654 44899999999865320 1 2367888999998
Q ss_pred HHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHH
Q 020186 142 QPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 142 ~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+++|+|+||+|+||++++++++++|. .++|||||||||+||++++.. +++.+|||||||++++|++||+++
T Consensus 223 --~la~~~~~~~hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~--~~~~~~~~Pplr~~~~~~~l~~~l 298 (444)
T PRK09236 223 --SLAKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYAR--LGNLIKCNPAIKTASDREALRQAL 298 (444)
T ss_pred --HHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhc--cCceEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999998865 789999999999999999873 588999999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCC-CC------
Q 020186 220 TSGSRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLP-RN------ 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~-~~------ 289 (329)
++|.|| +|+|||+||+.++|..+|. .+|++++|+++|++++.+. +.++++++++++|.||||+||++ +|
T Consensus 299 ~~G~i~-~igtDh~p~~~~~k~~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~~G~l~~G~ 377 (444)
T PRK09236 299 ADDRID-VIATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREGY 377 (444)
T ss_pred hCCCCc-EEECCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHHHhcCCCCCCccccCC
Confidence 999999 9999999999999987663 4699999999999987554 47899999999999999999995 34
Q ss_pred cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +++|+++.++++|+++|||| +|++++|+|.+
T Consensus 378 ~ADlvi~d~~~~~~~~~~~~~s~~~~sp~-~g~~~~g~v~~ 417 (444)
T PRK09236 378 WADLVLVDLNSPWTVTKENILYKCGWSPF-EGRTFRSRVAT 417 (444)
T ss_pred cCCEEEEcCCCCEEEchHHhcccCCCCCC-CCCEEeeeEEE
Confidence 7999999 58999999999999999999 99999999975
|
|
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=442.72 Aligned_cols=312 Identities=15% Similarity=0.122 Sum_probs=256.3
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh-cCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK-TGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~-~G~v~~~K 81 (329)
+.||..+|++||||||+||++.. .....+.++.+.+++.+ +. +||+++++++.......+++.++.+ .| +.+||
T Consensus 79 ~~s~s~aAl~gGvTTv~D~~~~~-~~~~~~~~~~~~~~~~~-~~--~d~~~~~~~~~~~~~~~~e~~~l~~~~g-v~~~k 153 (486)
T PLN02942 79 FFSGQAAALAGGTTMHIDFVIPV-NGNLLAGYEAYEKKAEK-SC--MDYGFHMAITKWDDTVSRDMETLVKEKG-INSFK 153 (486)
T ss_pred HHHHHHHHHcCCCeEEEeCCCCC-CCCHHHHHHHHHHHHhh-cC--CCEEEEEEecCCcHhHHHHHHHHHHhCC-CceEE
Confidence 35678899999999999997433 22336777777676653 34 8999987753211122457777754 57 46899
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTIL 141 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~ 141 (329)
+||++. +...+ ++ +.+++++++++++|.++++||||.++.. .+..+|..+|.+++
T Consensus 154 ~~~~~~---~~~~~-~~-~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~ 228 (486)
T PLN02942 154 FFMAYK---GSLMV-TD-ELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAI 228 (486)
T ss_pred EEEecC---CCCCC-CH-HHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHH
Confidence 998642 22233 34 8899999999999999999999875321 13468999999998
Q ss_pred HHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCC--CCCCceEEcCCCCChhhHHHHHH
Q 020186 142 QPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQG--GLRPHNYCLPVLKREIHRQAVVS 217 (329)
Q Consensus 142 ~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~--~~~~~~k~~PPLR~~~dr~aLw~ 217 (329)
.+++.+|+|+||+|+|+++++++|+.+|+ .+||||||||||+|+++++... .+++.+|||||||+++||++||+
T Consensus 229 --~la~~~g~~~~i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~ 306 (486)
T PLN02942 229 --RLAKFVNTPLYVVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQA 306 (486)
T ss_pred --HHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHH
Confidence 89999999999999999999999999887 7999999999999999988531 15789999999999999999999
Q ss_pred HHHcCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHHH-h-cCCHHHHHHHHhhhhhhhcCC-CC-
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVFE-E-MGALDKLEAFTSFNGPDFYGL-PR- 288 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~~-~-~~~l~~~v~~~s~nPAkifgl-~~- 288 (329)
++++|.|| +|+|||+||+.++|.. +| ..+|++|+|+.+|++++.++ . .++++++++++|.||||+||+ ++
T Consensus 307 ~l~~G~i~-~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~ 385 (486)
T PLN02942 307 ALSSGILQ-LVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRK 385 (486)
T ss_pred HhcCCceE-EEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999 9999999999998853 34 34699999999999986443 3 589999999999999999999 43
Q ss_pred C------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 289 N------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 289 ~------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
| +|||+|| +.+|+++.+.++|+++|||| +|++++|+|++
T Consensus 386 G~l~~G~~ADlv~vd~~~~~~v~~~~~~s~~~~~py-~g~~l~g~v~~ 432 (486)
T PLN02942 386 GAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVY-EGRRGKGKVEV 432 (486)
T ss_pred CCcCCCCcCCEEEEcCCccEEEcHHHccccCCCCCc-cCcEeeeeEEE
Confidence 3 7999999 68999999899999999999 99999999975
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=429.79 Aligned_cols=306 Identities=24% Similarity=0.273 Sum_probs=259.8
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K~f 83 (329)
++..+|++|||||+++|||+.|+.++.+.++.+.+.+++.+. +||.+++++..+ .+.+.+++..+.+.|+ .+||.+
T Consensus 75 ~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~~~~~~ 151 (423)
T PRK09357 75 TGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGL--VDVLPVGAITKGLAGEELTEFGALKEAGV-VAFSDD 151 (423)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCc--ccEEEEEEEEeCCCCccHHHHHHHHhCCc-EEEECC
Confidence 566788999999999999999999999988887777665444 899998876422 2345778888877774 465532
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPLIQ 146 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~la 146 (329)
+....+. +.+++++++++++|.++++|+|+..+.. .+..+|..++.+.+ .+|
T Consensus 152 --------~~~~~~~-~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~--~la 220 (423)
T PRK09357 152 --------GIPVQDA-RLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDV--LLA 220 (423)
T ss_pred --------CcccCCH-HHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHH--HHH
Confidence 1122244 7899999999999999999999875421 12468999999998 999
Q ss_pred hcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCC
Q 020186 147 RLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR 224 (329)
Q Consensus 147 ~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~I 224 (329)
+++|+|+||+|+|+++++++++.+|+ .+|+||||||||+||++++.. +++.+||+||||++++|++||++|++|.|
T Consensus 221 ~~~g~~~hi~H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~--~~~~~k~~Pplr~~~~~~~l~~~l~~G~~ 298 (423)
T PRK09357 221 EATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLT--YDPNYKVNPPLRTEEDREALIEGLKDGTI 298 (423)
T ss_pred HHHCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHHhC--cCCceEECCCCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999876 789999999999999999863 57899999999999999999999999999
Q ss_pred CeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHH-HH-hcCCHHHHHHHHhhhhhhhcCCCCC------cccEE
Q 020186 225 KFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKV-FE-EMGALDKLEAFTSFNGPDFYGLPRN------TSKIK 294 (329)
Q Consensus 225 d~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~-~~-~~~~l~~~v~~~s~nPAkifgl~~~------dADlv 294 (329)
| +|+|||+||+.++|..+| .++|++|+|+.+|++++. +. +.++++++++++|.|||++||++.| +|||+
T Consensus 299 ~-~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~G~i~~G~~AD~~ 377 (423)
T PRK09357 299 D-AIATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPAGPLAEGEPADLV 377 (423)
T ss_pred e-EEecCCCCCChHHccCCHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCccCCCCcCCEE
Confidence 9 999999999999997655 457999999999999864 33 4689999999999999999999543 79999
Q ss_pred EE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 295 LT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 295 i~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|+ +.+|++++++++++++|||| +|++++|+|.+
T Consensus 378 i~d~~~~~~v~~~~~~~~~~~~p~-~g~~~~g~v~~ 412 (423)
T PRK09357 378 IFDPEAEWTVDGEDFASKGKNTPF-IGMKLKGKVVY 412 (423)
T ss_pred EEcCCCCEEEchhhcccCCCCCCC-cCCEEeeEEEE
Confidence 99 57899999999999999999 99999999975
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=422.44 Aligned_cols=313 Identities=15% Similarity=0.122 Sum_probs=272.4
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEe
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
-+|-.||.+||+|+||||+-..++.+..+.++.+++++..+.+ |||+||++++.+.....+||+.|.+.-.+.|||+|
T Consensus 89 ~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~c--CDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~f 166 (522)
T KOG2584|consen 89 FQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVC--CDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFF 166 (522)
T ss_pred hcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCcee--eeeeeeEeeeecCcchHHHHHHHhhhcCcceEEee
Confidence 4688999999999999998666788889999999999887766 99999999987755567788888764337999999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQP 143 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~~ 143 (329)
|+|. +-+++.| ..||++|+.++++|.+.+|||||.+++. ++.+-|++|+.|++
T Consensus 167 mayk---~~~~v~d--~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai-- 239 (522)
T KOG2584|consen 167 MAYK---DLYMVRD--SELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAI-- 239 (522)
T ss_pred eeec---cccccCH--HHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHH--
Confidence 9873 4456777 8999999999999999999999998652 12467999999999
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCC--CCceEEcCCCCChh-hHHHHHHH
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGL--RPHNYCLPVLKREI-HRQAVVSA 218 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~--~~~~k~~PPLR~~~-dr~aLw~a 218 (329)
.+|+..+||||++||.++.|.++|.++|+ .-++.|+.--.|.++...|..+.+ .++|+|+||||+.. +++.||++
T Consensus 240 ~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~l 319 (522)
T KOG2584|consen 240 TIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDL 319 (522)
T ss_pred HHHHhcCCCcceEEEeehhHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999987 668999999999888776654322 46899999999977 89999999
Q ss_pred HHcCCCCeEEecCCCCCCcCccccc---C-CcC-CccchhHHHHHHHHH-H-HhcCCHHHHHHHHhhhhhhhcCC-CCC-
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKECA---C-GCA-GIYNAPVALSLYAKV-F-EEMGALDKLEAFTSFNGPDFYGL-PRN- 289 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~~---~-~~~-Gi~~~e~~lpll~~~-~-~~~~~l~~~v~~~s~nPAkifgl-~~~- 289 (329)
|++|+++ .++||||||+.++|... | .+| |+.|+|.+|+++|+- + .++++..|+|.++|+|.||+||| |+|
T Consensus 320 La~g~L~-~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlYprKG 398 (522)
T KOG2584|consen 320 LAEGDLQ-LTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKG 398 (522)
T ss_pred HhcCccc-eeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheeccCcCc
Confidence 9999999 99999999999999753 4 234 999999999999963 3 46889999999999999999999 775
Q ss_pred ------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEe
Q 020186 290 ------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 327 (329)
Q Consensus 290 ------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~ 327 (329)
||||||| +...+|+++..|++++|+.| |||+++|.|.
T Consensus 399 rIavGsDADiVIwdp~at~tIS~~th~~~~d~Nif-EGm~~~G~pl 443 (522)
T KOG2584|consen 399 RIAVGSDADIVIWDPNATKTISAKTHHSANDFNIF-EGMTVHGVPL 443 (522)
T ss_pred eecccCCCcEEEECCCcceEeccccccccccceee-cCcEecceeE
Confidence 8999999 68999999999999999999 9999999885
|
|
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=428.76 Aligned_cols=310 Identities=17% Similarity=0.195 Sum_probs=264.0
Q ss_pred cccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
++..+|++||||||++|| |+.|+.++.+.++.+.+..+..+. +||++++++ . ....+++.++.+.|+ .+||+|
T Consensus 74 ~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~--~-~~~~~ei~~l~~~G~-~giKv~ 147 (447)
T cd01315 74 TGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLH--VDVGFWGGL--V-PGNLDQLRPLDEAGV-VGFKCF 147 (447)
T ss_pred HHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCce--eeEEEEEee--c-CCCHHHHHHHHHcCC-cEEEEE
Confidence 667889999999999999 678899999988888777654444 899998765 3 335788999998885 599999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQP 143 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~~ 143 (329)
+.... ..+....+. ..+++++++++++|.++++|+||.+++. .+..+|..++.+++
T Consensus 148 ~~~~~-~~~~~~~~~-~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~-- 223 (447)
T cd01315 148 LCPSG-VDEFPAVDD-EQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRIL-- 223 (447)
T ss_pred ecccC-CCCcccCCH-HHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHH--
Confidence 86421 122223344 7899999999999999999999986421 01357889999999
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHc
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTS 221 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~ 221 (329)
.+|+.+|+|+||+|+|+++++++++++|+ .+++||||||||.|+++++.. +++.+||+||||+++||++||++|++
T Consensus 224 ~la~~~g~~ihi~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~--~~~~~~~~Pplr~~~~~~~l~~~l~~ 301 (447)
T cd01315 224 LLAKETGCRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPD--GGTEFKCAPPIRDAANQEQLWEALEN 301 (447)
T ss_pred HHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccC--CCCceEECCCCCChHHHHHHHHHHhC
Confidence 89999999999999999999999999876 789999999999999999863 58899999999999999999999999
Q ss_pred CCCCeEEecCCCCCCcCccc---ccC--CcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC-C-C---
Q 020186 222 GSRKFFLGTDSAPHERGRKE---CAC--GCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP-R-N--- 289 (329)
Q Consensus 222 G~Id~~i~SDHaPh~~~eK~---~~~--~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~-~-~--- 289 (329)
|.|| +|+|||+||+.++|. .++ ..+|++|+|+.+|++++.+. ++++++++++++|.|||++||++ + |
T Consensus 302 g~i~-~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~ 380 (447)
T cd01315 302 GDID-MVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIA 380 (447)
T ss_pred Ccee-EEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCcccc
Confidence 9999 999999999999986 333 34699999999999886543 36899999999999999999995 3 3
Q ss_pred ---cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ---TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ---dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|+ +++|++++++++++++|+|| +|++++|+|.+
T Consensus 381 ~g~~Ad~~v~d~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~v~~ 423 (447)
T cd01315 381 VGYDADFVVWDPEEEFTVDAEDLYYKNKISPY-VGRTLKGRVHA 423 (447)
T ss_pred CCCCCCEEEEcCCCCEEEcHHHccccCCCCCc-cCeEEeeeEEE
Confidence 7999999 57899999999999999999 99999999975
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=420.39 Aligned_cols=313 Identities=16% Similarity=0.144 Sum_probs=257.9
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEe
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
-+++.+|++|||||++|||++.|+.+..+.++.+..++...+. +||+++...........+++..+.+.|+ .++|+|
T Consensus 74 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~l~~~g~-~~ik~~ 150 (447)
T cd01314 74 ESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSV--IDYGFHMIITDWTDSVIEELPELVKKGI-SSFKVF 150 (447)
T ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCc--ccEEEEEeecCCChHHHHHHHHHHHcCC-CEEEEE
Confidence 3566788999999999999998877778878777665544333 8998887642112223567788877784 589999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQP 143 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~~ 143 (329)
+++. .....+. +.++++++++++.|.++.+|+|+..... .+..+|..++.+++
T Consensus 151 ~~~~----~~~~~s~-~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~-- 223 (447)
T cd01314 151 MAYK----GLLMVDD-EELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI-- 223 (447)
T ss_pred eccC----CCCCCCH-HHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH--
Confidence 8642 1122233 8999999999999999999999865320 12357888999988
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCC-CCCCceEEcCCCCChhhHHHHHHHHH
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQG-GLRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~-~~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
.+++.+|+|+|++|+|+++++++|+.+|+ .+|+||||||||+|+++++... .+|+.+|||||||+++||++||++++
T Consensus 224 ~la~~~~~~~~~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~ 303 (447)
T cd01314 224 RLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLS 303 (447)
T ss_pred HHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHh
Confidence 89999999999999999999999998876 7899999999999999998321 25789999999999999999999999
Q ss_pred cCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCC-CC-C--
Q 020186 221 SGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGL-PR-N-- 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl-~~-~-- 289 (329)
+|.|| +|+|||+||+.++|.. +| .++|++|+|+++|++|+..+ +.++++++++++|.||||+||| ++ |
T Consensus 304 ~G~i~-~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l 382 (447)
T cd01314 304 SGTLQ-TVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTI 382 (447)
T ss_pred CCCee-EEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCcc
Confidence 99999 9999999999988853 34 34699999999999996433 3689999999999999999998 44 3
Q ss_pred ----cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ----TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ----dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +++|+++.++++|+++|||| +|++++|+|++
T Consensus 383 ~~G~~AD~vi~d~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~v~~ 426 (447)
T cd01314 383 AVGSDADLVIWDPNAEKTISADTHHHNVDYNIF-EGMKVKGWPVV 426 (447)
T ss_pred CCCCcCCEEEEeCCcCEEecHHHhhccCCCCcc-cCeEEeeeEEE
Confidence 7999999 58999999999999999999 99999999975
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=418.57 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=258.8
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEee
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYP 84 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~ 84 (329)
++..+|++|||||+++||++.|+.+..+.++.+.+.+.+.+. +||+++..+.....+..+++.++.+.|+ .++|+|+
T Consensus 73 ~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ik~~~ 149 (459)
T PRK08323 73 TGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAV--IDYGFHMIITDWNEVVLDEMPELVEEGI-TSFKLFM 149 (459)
T ss_pred HHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCce--EEEEEEEEecCCcHHHHHHHHHHHHcCC-CEEEEEE
Confidence 455688999999999999998888888878777665544443 8999887652122233567888888885 6899998
Q ss_pred ccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHHHH
Q 020186 85 AGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 85 ~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~~~ 144 (329)
++. +....+ . +.+.++++++++.|.++.+|+|+.+.+. .+..+|..++.+++ .
T Consensus 150 ~~~---~~~~~s-~-~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~--~ 222 (459)
T PRK08323 150 AYK---GALMLD-D-DELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAI--M 222 (459)
T ss_pred ecC---CCCCCC-H-HHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHH--H
Confidence 642 112233 3 7899999999999999999999865321 12467889999998 8
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC--CCCceEEcCCCCChhhHHHHHHHHH
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG--LRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~--~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
+++.+|+|+||+|+|+++++++|+.+|+ .+||||||||||+|+++++.... +|..+|||||||+++|+++||++|+
T Consensus 223 ~a~~~~~~~~i~H~s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~ 302 (459)
T PRK08323 223 LAELAGAPLYIVHVSCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQ 302 (459)
T ss_pred HHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhh
Confidence 9999999999999999999999999887 78999999999999999986422 4788999999999999999999999
Q ss_pred cCCCCeEEecCCCCCCcCcccc----cC--CcCCccchhHHHHHHHHH-HH-hcCCHHHHHHHHhhhhhhhcCC-CC-C-
Q 020186 221 SGSRKFFLGTDSAPHERGRKEC----AC--GCAGIYNAPVALSLYAKV-FE-EMGALDKLEAFTSFNGPDFYGL-PR-N- 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK~~----~~--~~~Gi~~~e~~lpll~~~-~~-~~~~l~~~v~~~s~nPAkifgl-~~-~- 289 (329)
+|.|| +|+|||+||+.++|.. +| .++|++++|+.+|++++. +. +.++++++++++|.||||+||+ ++ |
T Consensus 303 ~G~i~-~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~ 381 (459)
T PRK08323 303 DGDLQ-VVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGT 381 (459)
T ss_pred cCCee-EEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcc
Confidence 99999 9999999999888753 33 456999999999999953 33 4689999999999999999999 43 3
Q ss_pred -----cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 -----TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 -----dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +++|+++.++++|+++|||| +|++++|+|.+
T Consensus 382 l~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~s~~-~g~~~~g~v~~ 426 (459)
T PRK08323 382 IAVGADADIVIWDPNATKTISASTLHSNVDYNPY-EGFEVTGWPVT 426 (459)
T ss_pred cCCCCcCCEEEEcCCcccccCHHHHhhcCCCCcc-cCcEEeeeEEE
Confidence 7999999 58999999999999999999 99999999865
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-53 Score=417.00 Aligned_cols=313 Identities=19% Similarity=0.166 Sum_probs=254.0
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHH-HHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDE-IKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~e-l~~l~~~G~v~~~K~ 82 (329)
-++..+|++|||||++|||++.|+.+..+.++...+.....+. +||++|...........++ +..+.+.|+ ..+|+
T Consensus 74 ~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ik~ 150 (454)
T TIGR02033 74 FTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSV--IDYGFHMMITHWNDEVLEEHIPELVEEGI-TSFKV 150 (454)
T ss_pred HHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCce--EEEEEEecccCCcHHHHHHHHHHHHhcCC-cEEEE
Confidence 3556788999999999999998887888888777666544333 7998886531111222334 555666774 58999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
|+++. ....+ +. +.++++++++++.|.++.+|+|+..... .+..+|..++.+.+
T Consensus 151 ~~~~~---~~~~~-~~-~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~- 224 (454)
T TIGR02033 151 FMAYK---NLLMV-DD-EELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAI- 224 (454)
T ss_pred EeecC---CCCCC-CH-HHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHH-
Confidence 98541 11223 33 8899999999999999999999865310 12457888899988
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+++.+|+|+||+|+|++++++.|+.+|+ .+||||+|||||+||++++...+ +++.+|||||||+++||++||++|
T Consensus 225 -~~~~~~~~~~~i~H~s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l 303 (454)
T TIGR02033 225 -ALAALANAPLYVVHVSTASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSAL 303 (454)
T ss_pred -HHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHh
Confidence 89999999999999999999999988876 68999999999999999985321 467899999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCccc----ccC--CcCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCC-CC-C
Q 020186 220 TSGSRKFFLGTDSAPHERGRKE----CAC--GCAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGL-PR-N 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~----~~~--~~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl-~~-~ 289 (329)
.+|.|| +|+|||+||+.++|. .+| .++|++|+|+.+|++++.+ . +.++++++++++|.||||+||+ ++ |
T Consensus 304 ~~G~i~-~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G 382 (454)
T TIGR02033 304 SSGALQ-TVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKG 382 (454)
T ss_pred hcCCeE-EEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCC
Confidence 999999 999999999988883 234 3469999999999999643 3 3579999999999999999999 43 4
Q ss_pred ------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 383 ~l~~G~~AD~~i~d~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~v~~ 428 (454)
T TIGR02033 383 TIAVGSDADIVIWDPNRTTVISAETHHDNADYNPF-EGFKVQGAVVS 428 (454)
T ss_pred ccccCCcCCEEEEcCCcCeeechHHhhccCCCCcc-cCeEEeeeEEE
Confidence 7999999 58999999999999999999 99999999975
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=306.08 Aligned_cols=312 Identities=63% Similarity=1.036 Sum_probs=282.4
Q ss_pred CccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccccccCCC
Q 020186 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQD 93 (329)
Q Consensus 14 GvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~~~~~~~ 93 (329)
++...+.|||..||+++.+...++++++.+..+..-+|-+.+++|++++..+++|.+..+.|++.++|+|+++.++|++.
T Consensus 33 ~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlYLtd~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~ 112 (344)
T COG0418 33 GFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDS 112 (344)
T ss_pred hcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEEecCCCCHHHHHHHHhcCcEEEEEeccCCccccCcC
Confidence 78889999999999999888888898888765543589999999998778899999999999889999999999999999
Q ss_pred CccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCC
Q 020186 94 GVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEG 173 (329)
Q Consensus 94 ~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~ 173 (329)
||+|- +.++.+|+.+++.|.++.||.|-.+...+++.+|...+.+++...-.+.+..++.+.|+||+++++.|+++. .
T Consensus 113 GV~~~-~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~dav~~v~~~~-~ 190 (344)
T COG0418 113 GVTDI-EKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFPKLKIVLEHITTKDAVEYVKDAN-N 190 (344)
T ss_pred CcCcH-HHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHhhCCcceEEEEEeccHHHHHHHHhcC-c
Confidence 99997 999999999999999999999977665677889999888888666678899999999999999999999875 5
Q ss_pred ceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchh
Q 020186 174 FVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253 (329)
Q Consensus 174 ~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e 253 (329)
++.+.+|||||++|.+++..++..+.+.|.|=++.++||+||.++..+|.--|++|||.|||....|+...|++|+-+..
T Consensus 191 nlaATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsap 270 (344)
T COG0418 191 NLAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESACGCAGIFSAP 270 (344)
T ss_pred ceeeEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccccccccccccccH
Confidence 69999999999999999876666799999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCCCcEEEEEEe
Q 020186 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEWQPS 327 (329)
Q Consensus 254 ~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~ 327 (329)
..+|++.+++++...|+.|-...|.|..+++|||..+.-+++++++|.|....-.....-.||..|.+|+|.+.
T Consensus 271 ~al~~~AevFE~~naL~~LeaF~S~nGp~fY~lp~n~~~itL~k~~~~vP~~i~~g~~~vvpf~aGe~L~W~v~ 344 (344)
T COG0418 271 FALPLYAEVFEEENALDNLEAFASDNGPKFYGLPRNDKTITLVKEEWQVPESIPFGDDIVVPFRAGETLSWSVK 344 (344)
T ss_pred hHHHHHHHHHHHhcHHHHHHHHHhhcCcceecccCCCceEEEEeccccccceeccCCCceEEecCCCeeeeeeC
Confidence 99999999999999999999999999999999997666788889999998776666667889999999999863
|
|
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=259.75 Aligned_cols=313 Identities=66% Similarity=1.056 Sum_probs=271.5
Q ss_pred chhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccc
Q 020186 8 PICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGA 87 (329)
Q Consensus 8 ~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~ 87 (329)
+--+.|||...+.|||.+||+++.+..-.+++.+.+... .-.|.+++|+++...+++|.+..+.|++.++|+|+++.
T Consensus 28 P~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~kL~s---kttfLMslYLs~~ttPe~I~eAa~~~~irgVK~YPaGa 104 (344)
T KOG2902|consen 28 PHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMKLPS---KTTFLMSLYLSDKTTPEEIREAAESGVIRGVKLYPAGA 104 (344)
T ss_pred cccccCceeEEEEcCCCCCCcchHHHHHHHHHHHHhcCc---cceeEEEEeecCCCCHHHHHHHHHhCceeeEEeccCcc
Confidence 456789999999999999999998877667776666332 33557788878777899999999999999999999999
Q ss_pred cccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC-hhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHH
Q 020186 88 TTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD-IFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKF 166 (329)
Q Consensus 88 ~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~-~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~ 166 (329)
++|+..+++++++..|.+|+.+.+.|.++.+|.|-+..+.+ .+.+|...+-.++. ...+..+.++.+.|++|..+++.
T Consensus 105 TTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~-LhqrfP~LKivlEHcTt~dAv~~ 183 (344)
T KOG2902|consen 105 TTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQ-LHQRFPQLKIVLEHCTTMDAVNF 183 (344)
T ss_pred cccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHH-HHHhCccceeHHHhcccHHHHHH
Confidence 99999999886689999999999999999999997654322 45788887777764 56789999999999999999999
Q ss_pred HHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCc
Q 020186 167 VESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGC 246 (329)
Q Consensus 167 i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~ 246 (329)
++.|+...|-+.+++|||+|+.++|. + ++...|.|-++.+.||+||.+|..+|.--|+.|||.|||.+..|+...+.
T Consensus 184 ve~a~~~sVaaTvTahHL~Lt~~dwq--g-~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~~~~c 260 (344)
T KOG2902|consen 184 VESAKEGSVAATVTAHHLLLTRNDWQ--G-QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKESSCGC 260 (344)
T ss_pred HHhhcCCceeeEeehheeEEehhhhc--C-CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccccCCCc
Confidence 99998788899999999999999986 3 68899999999999999999999999999899999999999999877788
Q ss_pred CCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC--CCcccEEEEecceeecCCccCcCCcccccCCCcEEEE
Q 020186 247 AGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP--RNTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLEW 324 (329)
Q Consensus 247 ~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~--~~dADlvi~~~~~~v~~~~~~s~~~~spf~~G~~l~G 324 (329)
+|+-+....+|++.+++.+.+.|+.+-..+|.+.-+++|+| ++.-||++=++.|.|.+-....++..-||+.|.+|+|
T Consensus 261 AGvysqpfA~sy~A~VFde~gaLd~Lk~F~s~fG~~FY~~p~e~~sS~I~lKKe~~~vP~v~~~~~~~ivPf~age~LqW 340 (344)
T KOG2902|consen 261 AGVYSQPFALSYYAKVFDEAGALDKLKAFTSFFGPDFYGLPDERNSSKITLKKEPWKVPDVFNFPFGEIVPFFAGETLQW 340 (344)
T ss_pred ceeecccchHHHHHHHHhhhchHHHHhhhHhhcCcceecccccccccceeeecCcccCcchhcCCCCceeeecCCCeeee
Confidence 99999999999998999999999999999999999999997 3446766558999998766667778889999999999
Q ss_pred EEe
Q 020186 325 QPS 327 (329)
Q Consensus 325 ~v~ 327 (329)
.+.
T Consensus 341 ~~~ 343 (344)
T KOG2902|consen 341 QPL 343 (344)
T ss_pred eeC
Confidence 874
|
|
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=303.03 Aligned_cols=287 Identities=11% Similarity=0.044 Sum_probs=216.5
Q ss_pred cchhcccCccEEEEC-CCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEE-----e-C-------------------
Q 020186 7 LPICSVSHYGRAIVM-PNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLY-----L-T------------------- 60 (329)
Q Consensus 7 ~~~Aa~GGvTtvidm-Pnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~-----~-~------------------- 60 (329)
..+++.|||||+++| +++.|. . +.+.+..++... +||+++++.+ + +
T Consensus 86 ~~~~~~~GvTtvv~~~~~~~p~---~---~~~~~~~~~~~~--vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 157 (509)
T PRK09061 86 YRMQAFDGVTTALELEAGVLPV---A---RWYAEQAGEGRP--LNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPR 157 (509)
T ss_pred chhhccCCceeEEeeccCCCCH---H---HHHHHHHhcCCc--ceeehhcCcHHHHHHHhCCcccccccccccccccccc
Confidence 567889999999999 454543 1 222222222222 8999887763 0 1
Q ss_pred -C-----CCCHHHHHHHHh----cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChh
Q 020186 61 -D-----TTSPDEIKLARK----TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130 (329)
Q Consensus 61 -~-----~~~~~el~~l~~----~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~ 130 (329)
. +++++++.++.+ .|+ .+||.++.|. . .. +. +.|++++++++++|.++.+|+|+.+... .
T Consensus 158 ~~~~~~t~~el~~m~~ll~~al~~Ga-~gis~~~~y~--p---~~-~~-~eL~~l~~~A~~~g~~v~~H~e~~~~~~--~ 227 (509)
T PRK09061 158 WQERAATPAELAEILELLEQGLDEGA-LGIGIGAGYA--P---GT-GH-KEYLELARLAARAGVPTYTHVRYLSNVD--P 227 (509)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHCCC-CEEecCCccC--C---CC-CH-HHHHHHHHHHHHcCCEEEEEecCcccCC--c
Confidence 0 012334555554 785 5998876431 1 12 44 7899999999999999999999976421 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCC------HHHHHHHHcccC--CceEEEecchh--------hhcchhhhcCC
Q 020186 131 DREKVFIDTILQPLIQRLPQLKVVMEHITT------MDAVKFVESCKE--GFVAATVTPQH--------LVLNRNALFQG 194 (329)
Q Consensus 131 ~~E~~av~~~~~~~la~~~~~~lhi~HvSt------~~sl~~i~~ak~--~~vt~Et~phh--------L~l~~~~~~~~ 194 (329)
..|.+++.+++ .+++.+|+|+||+|+|+ ++++++|+++|+ .+||||+|||| |+|+++...
T Consensus 228 ~~e~~av~~~i--~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l~~~~~~-- 303 (509)
T PRK09061 228 RSSVDAYQELI--AAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFFDPGWLE-- 303 (509)
T ss_pred hhHHHHHHHHH--HHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcchhhhhhcccccCHHHHH--
Confidence 46788999999 89999999999999999 999999999987 89999999999 999776665
Q ss_pred CCCCce---EE---cCCCCC-------------------------hhhHHHHHHHHHcCCCCeEEecCCCCCCcCccccc
Q 020186 195 GLRPHN---YC---LPVLKR-------------------------EIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECA 243 (329)
Q Consensus 195 ~~~~~~---k~---~PPLR~-------------------------~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~ 243 (329)
.++..+ ++ +||||+ +.|+++||+++++|.| +|+|||+||+.++|..+
T Consensus 304 ~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~--~i~sD~~p~~~~~~~~~ 381 (509)
T PRK09061 304 RMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA--AIASDAMPWTWSDGTVY 381 (509)
T ss_pred HhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc--eEecCCccccccccccc
Confidence 245556 88 999999 7789999999999998 89999999999999766
Q ss_pred CCc--CCccchh------HHHHHHHHHH-Hh--cCCHHHHHHHHhhhhhhhcC-----CC-CC------cccEEEEecce
Q 020186 244 CGC--AGIYNAP------VALSLYAKVF-EE--MGALDKLEAFTSFNGPDFYG-----LP-RN------TSKIKLTKIPW 300 (329)
Q Consensus 244 ~~~--~Gi~~~e------~~lpll~~~~-~~--~~~l~~~v~~~s~nPAkifg-----l~-~~------dADlvi~~~~~ 300 (329)
|.. +|+.+.+ ..+|.+++.+ .. .++++++++++|.||||+|| ++ +| +|||+|||...
T Consensus 382 ~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l~~~G~i~~G~~ADlvv~D~~~ 461 (509)
T PRK09061 382 EGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAMRRKGRLQAGADADIVVFDPET 461 (509)
T ss_pred cccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccccCCEeeCCCCCcCEEEEchhh
Confidence 533 4766666 7888887644 33 37999999999999999999 75 34 79999996443
Q ss_pred eecCCccCcCCcccccCCCc
Q 020186 301 KVPEAFSFSFGDIIPMFAGN 320 (329)
Q Consensus 301 ~v~~~~~~s~~~~spf~~G~ 320 (329)
..+.+.+++. ++|| +|.
T Consensus 462 ~~~~~~~~~~--~~~~-~gi 478 (509)
T PRK09061 462 ITDRATFEDP--NRPS-EGV 478 (509)
T ss_pred cccccccccc--CCCC-CCc
Confidence 4444555443 6788 774
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=273.92 Aligned_cols=241 Identities=15% Similarity=0.088 Sum_probs=182.2
Q ss_pred ecccchhcccCccEEEECCC-CCCCCCcH------------------------HHHHHHHHHHHhhC-CCCccEE---EE
Q 020186 4 ITILPICSVSHYGRAIVMPN-LKPPITTT------------------------AAAVAYRESILKAL-PASSNFT---PL 54 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPn-t~p~~~~~------------------------~~l~~~~~~~~~~~-~~~vd~~---~~ 54 (329)
-++..+|++|||||+++||+ +.|+.++. +.++.+.+.+++.. . +||. +|
T Consensus 69 ~~~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h 146 (415)
T cd01297 69 DPDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPA--VNVAALVGH 146 (415)
T ss_pred CcchhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCC--cCeeeccCc
Confidence 35678899999999999998 66766655 55566777765442 3 8999 77
Q ss_pred EEEEeC---------CCCCHHHHHHHH----hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecC
Q 020186 55 MTLYLT---------DTTSPDEIKLAR----KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGE 121 (329)
Q Consensus 55 ~~~~~~---------~~~~~~el~~l~----~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaE 121 (329)
+++... ++.++++|.+|. +.|+ .+||.|+.|. .+... +. ..|+++|+.+++.|.++.+|||
T Consensus 147 ~~l~~~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga-~g~~~~~~y~---~~~~~-~~-~~l~~~~~~a~~~g~~v~~H~e 220 (415)
T cd01297 147 AALRRAVMGLDAREATEEELAKMRELLREALEAGA-LGISTGLAYA---PRLYA-GT-AELVALARVAARYGGVYQTHVR 220 (415)
T ss_pred HHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHCCC-eEEEcccccC---CcccC-CH-HHHHHHHHHHHHcCCEEEEEEC
Confidence 765310 012355666664 5685 6999988652 11123 34 8999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHH---------HHHHHcccC--CceEEEecchhhhcchhh
Q 020186 122 VTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA---------VKFVESCKE--GFVAATVTPQHLVLNRNA 190 (329)
Q Consensus 122 d~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~s---------l~~i~~ak~--~~vt~Et~phhL~l~~~~ 190 (329)
+.+ .+|..++.+++ .+++.+|+|+||+|+|+.++ +++|+++|+ .+|++|||||||.+
T Consensus 221 ~~~------~~e~~av~~~~--~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~---- 288 (415)
T cd01297 221 YEG------DSILEALDELL--RLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS---- 288 (415)
T ss_pred ccc------ccHHHHHHHHH--HHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc----
Confidence 875 36888999999 89999999999999999999 999999987 79999999998876
Q ss_pred hcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHH-HH-h-cC
Q 020186 191 LFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKV-FE-E-MG 267 (329)
Q Consensus 191 ~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~-~~-~-~~ 267 (329)
.+ .|+.+.++.++ +|+|||+|+. |. .+...+. +|+++.. +. + .+
T Consensus 289 ------------------~~----~~~~l~~~~~~-~i~SDh~~~~---~~----~~~~~~~---~~~~l~~~~~~~~~~ 335 (415)
T cd01297 289 ------------------ED----DVRRIMAHPVV-MGGSDGGALG---KP----HPRSYGD---FTRVLGHYVRERKLL 335 (415)
T ss_pred ------------------HH----HHHHHHcCCCc-eeeeCCCcCC---CC----CcchhCC---HHHHHHHHhcccCCC
Confidence 23 34444445899 9999999985 21 1122221 6777643 32 3 48
Q ss_pred CHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe
Q 020186 268 ALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK 297 (329)
Q Consensus 268 ~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~ 297 (329)
+++++++++|.||||+||++ +| +|||+|||
T Consensus 336 ~~~~~~~~~t~~pA~~~gl~~~G~l~~G~~ADlvv~d 372 (415)
T cd01297 336 SLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFD 372 (415)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeCCCCCCCEEEEc
Confidence 99999999999999999996 44 79999995
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=221.01 Aligned_cols=251 Identities=11% Similarity=0.006 Sum_probs=176.6
Q ss_pred ecccchhcccCccEEEECC-CC--CCCCCcHHHHHHHH---HHHHhh--CCCCccEEEEEEEEeCCCCCHHHHHHHHhcC
Q 020186 4 ITILPICSVSHYGRAIVMP-NL--KPPITTTAAAVAYR---ESILKA--LPASSNFTPLMTLYLTDTTSPDEIKLARKTG 75 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmP-nt--~p~~~~~~~l~~~~---~~~~~~--~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G 75 (329)
.++-.+|++|||||+++|| |. .|+..+.+.++.+. +.++++ +. |||.||+.+.....++.++|..+.+.|
T Consensus 77 ~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~h~~~e~~~~~~~~~l~~~~~~g 154 (376)
T TIGR02318 77 VEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLR--ADHRLHLRCELPNEEVLPELEELIDDP 154 (376)
T ss_pred HHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchh--hhceeEEEEEecCccHHHHHHHHhcCC
Confidence 4566789999999999999 44 57778889888888 444433 33 899999997433456688999999999
Q ss_pred ceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhH----HHHHHHHHHHHHHHHhcCCC
Q 020186 76 VVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFD----REKVFIDTILQPLIQRLPQL 151 (329)
Q Consensus 76 ~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~----~E~~av~~~~~~~la~~~~~ 151 (329)
+ .+||.||... .+..+..|. ..+++.++. +.| ++|||+.++...... .-.+++.+++ .+|+.+|+
T Consensus 155 ~-~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~~~~~e~i~~~v--~~A~~~G~ 223 (376)
T TIGR02318 155 R-VDLISLMDHT--PGQRQFRDL-EKYREYYRG--KRG---LSDDEFDEIVEERIARRAEYGLANRSEIA--ALARARGI 223 (376)
T ss_pred C-cCEEEEeCCC--CCcccccCH-HHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHhhccHHHHHHHH--HHHHHCCC
Confidence 5 5999999653 233444454 666766644 556 779998764311100 0135677777 79999999
Q ss_pred eEEEEec-CCHHHHHHHHcccCC-----ceEEEecchhhhcchhhhcCCCCCCc-eEEcC-CCCChhh--HHHHHHHHHc
Q 020186 152 KVVMEHI-TTMDAVKFVESCKEG-----FVAATVTPQHLVLNRNALFQGGLRPH-NYCLP-VLKREIH--RQAVVSAVTS 221 (329)
Q Consensus 152 ~lhi~Hv-St~~sl~~i~~ak~~-----~vt~Et~phhL~l~~~~~~~~~~~~~-~k~~P-PLR~~~d--r~aLw~al~~ 221 (329)
|+ ..|. .+.+.++..++.. . +++.|+ .++... .|.+ .++.| |+|...+ +..+|+++.+
T Consensus 224 ~v-~sH~~~~~e~i~~a~~~G-v~~~E~~~t~e~--------a~~~~~--~G~~v~~~~p~~~r~~~~~~~~~l~~~~~~ 291 (376)
T TIGR02318 224 PL-ASHDDDTPEHVAEAHDLG-VTISEFPTTLEA--------AKEARS--LGMQILMGAPNIVRGGSHSGNLSARELAHE 291 (376)
T ss_pred eE-EEecCCCHHHHHHHHHCC-CChhccCCCHHH--------HHHHHH--cCCeEEECCccccccccccchHHHHHHHHC
Confidence 98 7788 4666554444332 2 333333 122221 2555 77778 8999877 8899999999
Q ss_pred CCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCCC-C------ccc
Q 020186 222 GSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLPR-N------TSK 292 (329)
Q Consensus 222 G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~~-~------dAD 292 (329)
|.+| +++|||.|++ .++.++.... ..++++++++++|.|||+++|++. | +||
T Consensus 292 G~~~-~l~SD~~p~~------------------~l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~~G~I~~G~~AD 352 (376)
T TIGR02318 292 GLLD-VLASDYVPAS------------------LLLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLSDRGSIAPGKRAD 352 (376)
T ss_pred CCcE-EEEcCCCcHH------------------HHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCCCCcCCCCCccc
Confidence 9999 9999998842 3444444332 257999999999999999999953 3 799
Q ss_pred EEEEec
Q 020186 293 IKLTKI 298 (329)
Q Consensus 293 lvi~~~ 298 (329)
|++++.
T Consensus 353 lvvvd~ 358 (376)
T TIGR02318 353 LVRVHR 358 (376)
T ss_pred EEEEcC
Confidence 999954
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=216.55 Aligned_cols=255 Identities=12% Similarity=-0.005 Sum_probs=167.6
Q ss_pred eecccchhcccCccEEEECC-CCC-CC-C----CcHHHHHHHHH--HHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh
Q 020186 3 WITILPICSVSHYGRAIVMP-NLK-PP-I----TTTAAAVAYRE--SILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmP-nt~-p~-~----~~~~~l~~~~~--~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~ 73 (329)
|.++-.+|++||+||++||+ ++. |+ . +..+.+..+.+ +.+..+. |||+||+.+.....+..++|.++.+
T Consensus 80 ~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vD~~~h~~~~~~~~~~~~~l~~~~~ 157 (383)
T PRK15446 80 LAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLR--ADHRLHLRCELTNPDALELFEALLA 157 (383)
T ss_pred HHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchh--ccceeEEEEEecCcchHHHHHHHhc
Confidence 34577899999999999985 443 42 2 22223444554 3333333 8999999985434556889999999
Q ss_pred cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC----hhHHHHHHHHHHHHHHHHhcC
Q 020186 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD----IFDREKVFIDTILQPLIQRLP 149 (329)
Q Consensus 74 ~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~----~~~~E~~av~~~~~~~la~~~ 149 (329)
.|+ ++||.||......++ +.+. .. ++.+. .++.| ++|||+.++... +...|.+++++++ .+|+.+
T Consensus 158 ~g~-~~~k~fm~~~p~~~~--~~~~-~~-~~~~~-~~~~g---~~~~e~~~~~~~~~~~~~~~~~e~i~~~v--~~A~~~ 226 (383)
T PRK15446 158 HPR-VDLVSLMDHTPGQRQ--FRDL-EK-YREYY-AGKYG---LSDEEFDAFVEERIALSARYAPPNRRAIA--ALARAR 226 (383)
T ss_pred CCC-cCEEEEeCCCCcccc--ccCH-HH-HHHHH-HhhcC---CCHHHHHHHHHHHHHhHhhcCHHHHHHHH--HHHHHC
Confidence 995 699999964211122 2232 23 44555 56777 679999865321 1233567788888 899999
Q ss_pred CCeEEEEec-CCHHHHHHHHcccCCceEEEecchhhhcchhh---hcCCCCCCc-eEEcC-CCCC--hhhHHHHHHHHHc
Q 020186 150 QLKVVMEHI-TTMDAVKFVESCKEGFVAATVTPQHLVLNRNA---LFQGGLRPH-NYCLP-VLKR--EIHRQAVVSAVTS 221 (329)
Q Consensus 150 ~~~lhi~Hv-St~~sl~~i~~ak~~~vt~Et~phhL~l~~~~---~~~~~~~~~-~k~~P-PLR~--~~dr~aLw~al~~ 221 (329)
|+++ ..|. .+.+.++..+++. +.++ | |. .+.+. ..+ .|.. .++.| |+|. ...+..+|+++..
T Consensus 227 g~~v-~sH~~~~~~~i~~a~~~G-v~~~-e---~~--~~~e~~~~~~~--~g~~v~~~~p~~~r~~~~~~~~~~~~~~~~ 296 (383)
T PRK15446 227 GIPL-ASHDDDTPEHVAEAHALG-VAIA-E---FP--TTLEAARAARA--LGMSVLMGAPNVVRGGSHSGNVSALDLAAA 296 (383)
T ss_pred CCce-eecCCCCHHHHHHHHHcC-Ccee-e---CC--CcHHHHHHHHH--CCCEEEeCCcccccCCcccchHhHHHHHHC
Confidence 9998 7788 5776655544332 4333 3 11 12222 111 1333 33445 5787 6678999999999
Q ss_pred CCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCC-C------cccE
Q 020186 222 GSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPR-N------TSKI 293 (329)
Q Consensus 222 G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~-~------dADl 293 (329)
|.++ +++|||.|++ .++.++.... ..+++++++++.|.|||+++|++. | +|||
T Consensus 297 Gv~~-~lgSD~~p~~------------------~~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~~~G~I~~G~~ADl 357 (383)
T PRK15446 297 GLLD-ILSSDYYPAS------------------LLDAAFRLADDGGLDLPQAVALVTANPARAAGLDDRGEIAPGKRADL 357 (383)
T ss_pred CCcE-EEEcCCChhh------------------HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCcCcCCCCcCCE
Confidence 9999 9999998753 2333333333 368999999999999999999943 3 7999
Q ss_pred EEEecc
Q 020186 294 KLTKIP 299 (329)
Q Consensus 294 vi~~~~ 299 (329)
+|+|..
T Consensus 358 vv~d~~ 363 (383)
T PRK15446 358 VRVRRA 363 (383)
T ss_pred EEEcCC
Confidence 999543
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=159.67 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCeEEEEecC---CHHHHHHHHcccC---CceEEEecchhhhcchhhhcC----CCCCC-
Q 020186 130 FDREKVFIDTILQPLIQRLPQLKVVMEHIT---TMDAVKFVESCKE---GFVAATVTPQHLVLNRNALFQ----GGLRP- 198 (329)
Q Consensus 130 ~~~E~~av~~~~~~~la~~~~~~lhi~HvS---t~~sl~~i~~ak~---~~vt~Et~phhL~l~~~~~~~----~~~~~- 198 (329)
...|..++.+.+ .+++..+++.|+.|+. +..+++.+.++++ .+++ |+||||+.++.++++. ...|.
T Consensus 167 ~~~~~~~~~~~a--~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~ 243 (387)
T cd01308 167 TVEELARIAAEA--RVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPIT-QFLPTHINRTAPLFEQGVEFAKMGGT 243 (387)
T ss_pred CHHHHHHHHHHH--HHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcc-eeECCcccCCHHHHHHHHHHHHcCCc
Confidence 345555555555 4555556665555544 3477777755432 5678 9999999988774311 00122
Q ss_pred ---ceEEcCCCCChh---hHHHHHHHHHcCCCC--eEEecCCC---CCCcCcccccCCcCCccchhHHHHHHHHHHHh-c
Q 020186 199 ---HNYCLPVLKREI---HRQAVVSAVTSGSRK--FFLGTDSA---PHERGRKECACGCAGIYNAPVALSLYAKVFEE-M 266 (329)
Q Consensus 199 ---~~k~~PPLR~~~---dr~aLw~al~~G~Id--~~i~SDHa---Ph~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~ 266 (329)
..+++||+|+.. +++.||.++.+|..+ ++++|||+ |+..+++. ....|+.+++++++.+...+.. +
T Consensus 244 v~i~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~--~~~~g~~~~~~~~~~~~~~v~~~~ 321 (387)
T cd01308 244 IDLTSSIDPQFRKEGEVRPSEALKRLLEQGVPLERITFSSDGNGSLPKFDENGN--LVGLGVGSVDTLLREVREAVKCGD 321 (387)
T ss_pred EEEECCCCccccccCccChHHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCe--EEecCcCcHHHHHHHHHHHHHhCC
Confidence 355677777653 567889999988631 37899997 43332221 1125888888888888755544 5
Q ss_pred CCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEecceee
Q 020186 267 GALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTKIPWKV 302 (329)
Q Consensus 267 ~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~~~~~v 302 (329)
+++++++++++.|||++||++ .| +|||+|||..+.+
T Consensus 322 i~~~~al~~~T~npA~~lg~~~~G~i~~G~~ADlvv~d~~~~~ 364 (387)
T cd01308 322 IPLEVALRVITSNVARILKLRKKGEIQPGFDADLVILDKDLDI 364 (387)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEcCCCCE
Confidence 899999999999999999985 33 7999999644433
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=153.15 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCe--EEEEecC-CHHHHHHHHcc-cC--CceEEEecchhhhcchhh------hcCCCCCC
Q 020186 131 DREKVFIDTILQPLIQRLPQLK--VVMEHIT-TMDAVKFVESC-KE--GFVAATVTPQHLVLNRNA------LFQGGLRP 198 (329)
Q Consensus 131 ~~E~~av~~~~~~~la~~~~~~--lhi~HvS-t~~sl~~i~~a-k~--~~vt~Et~phhL~l~~~~------~~~~~~~~ 198 (329)
..|..++.+.+ ..++.++++ .|++|++ ++.+++.++++ ++ ..+++ +|+||+.++.+. +.+ .|.
T Consensus 170 ~~~l~~~~~~a--~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~-~~~~H~~~~~~~~~~~~~~~~--~G~ 244 (388)
T PRK10657 170 VEELARLAAEA--RVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQ-FLPTHVNRNEPLFEQALEFAK--KGG 244 (388)
T ss_pred HHHHHHHHHHH--HHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcce-eeCcccCCCHHHHHHHHHHHH--cCC
Confidence 34445555554 444555543 7899999 79999998544 33 67775 999999986554 221 233
Q ss_pred ce--E-EcCCCCChhh---HHHHHHHHHcCC-CC-eEEecCCCCCCcC--cccccCCcCCccchhHHHHHHHHHH-HhcC
Q 020186 199 HN--Y-CLPVLKREIH---RQAVVSAVTSGS-RK-FFLGTDSAPHERG--RKECACGCAGIYNAPVALSLYAKVF-EEMG 267 (329)
Q Consensus 199 ~~--k-~~PPLR~~~d---r~aLw~al~~G~-Id-~~i~SDHaPh~~~--eK~~~~~~~Gi~~~e~~lpll~~~~-~~~~ 267 (329)
+. . ++||+|.+.+ .+.||+++.+|. +| .+++|||++.... +|. .+...|..+.+++++.+...+ ...+
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g-~~~~~g~~~~~~l~~~~~~~~~~~gi 323 (388)
T PRK10657 245 VIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDG-NLVGLGVGSVESLLEEVRELVKDEGL 323 (388)
T ss_pred eEEEecCCCcccccCccCHHHHHHHHHHcCCChhheEEECCCCCCCceeccCC-CEeccCcCchhhHHHHHHHHHHhcCC
Confidence 22 4 7999998754 488999999997 65 5789999654321 121 112247777778888877655 4478
Q ss_pred CHHHHHHHHhhhhhhhcCCC-CC------cccEEEEeccee
Q 020186 268 ALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTKIPWK 301 (329)
Q Consensus 268 ~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~~~~~ 301 (329)
++++++++++.||||+||++ .| +||+++|+.++.
T Consensus 324 s~~~~l~~aT~npA~~lg~~~~G~l~~G~~AD~vv~~~~~~ 364 (388)
T PRK10657 324 PLEDALKPLTSNVARFLKLNGKGEILPGKDADLLVLDDDLR 364 (388)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEECCCCC
Confidence 99999999999999999994 23 799999974443
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=138.09 Aligned_cols=242 Identities=10% Similarity=0.006 Sum_probs=139.4
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCC-ccEEEEEEEEeC-C---C-C--CHHHHHHHHhc--
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPAS-SNFTPLMTLYLT-D---T-T--SPDEIKLARKT-- 74 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~-vd~~~~~~~~~~-~---~-~--~~~el~~l~~~-- 74 (329)
+.-.+++.+||||++||++.. ..+.+.+.......++...++ +++++++....+ . + . ..+++.++.+.
T Consensus 75 ~~~~~~l~~G~Ttv~d~g~~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T PRK12394 75 RPDMYMPPNGVTTVVDAGSAG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYR 152 (379)
T ss_pred CHHHHHHhCCccEEEECCCCC--cccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCc
Confidence 445668899999999998543 245554444432222211111 355544321000 0 0 1 13566666542
Q ss_pred CceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEE
Q 020186 75 GVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVV 154 (329)
Q Consensus 75 G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lh 154 (329)
+.+.++|+++...... ...+ +.+.+.++.++++|.++.+|+++... | ..+.+ .+.+.-..-.|
T Consensus 153 ~~~~g~ki~~~~~~~~---~~~~--~~l~~~~~~A~~~g~~v~iH~~e~~~-------~---~~~~~--~~l~~g~~~~H 215 (379)
T PRK12394 153 NVLQGLKLRVQTEDIA---EYGL--KPLTETLRIANDLRCPVAVHSTHPVL-------P---MKELV--SLLRRGDIIAH 215 (379)
T ss_pred CcEEEEEEEEeccccc---ccch--HHHHHHHHHHHHcCCCEEEEeCCCCc-------c---HHHHH--HhcCCCCEEEe
Confidence 2356899986432110 1233 78999999999999999999997642 1 11122 11111112233
Q ss_pred EE-------ecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC-CCe
Q 020186 155 ME-------HITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS-RKF 226 (329)
Q Consensus 155 i~-------HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~-Id~ 226 (329)
.. |.+..+..+.++++++..++..+ .+| |+..+.+.+|+++.+|. .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~----------------------~~g--~s~~~~~~~~~~l~~G~~~~- 270 (379)
T PRK12394 216 AFHGKGSTILTEEGAVLAEVRQARERGVIFDA----------------------ANG--RSHFDMNVARRAIANGFLPD- 270 (379)
T ss_pred cCCCCCCCcCCCCCCChHHHHHHHhCCeEEEe----------------------cCC--ccccchHHHHHHHHCCCCce-
Confidence 33 34444444444444432222111 111 44456788999999996 78
Q ss_pred EEecCCCCCCcCcccccCCcCCccchhHHHHHHHH-HHHhcCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEEE-
Q 020186 227 FLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK-VFEEMGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKLT- 296 (329)
Q Consensus 227 ~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-~~~~~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi~- 296 (329)
+|+|||+|... ... .+ ..|+.++. .....+++++++++.+.|||+++|++ + | +|||+++
T Consensus 271 ~lgTD~~~~~~---~~~----~~----~~l~~~~~~~~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~ 339 (379)
T PRK12394 271 IISSDLSTITK---LAW----PV----YSLPWVLSKYLALGMALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFK 339 (379)
T ss_pred EEECCCCCCCc---ccC----cc----chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCccCEEEEe
Confidence 99999998752 110 11 13455543 33446899999999999999999995 3 3 6999999
Q ss_pred -eccee
Q 020186 297 -KIPWK 301 (329)
Q Consensus 297 -~~~~~ 301 (329)
+..|.
T Consensus 340 ~~~~~~ 345 (379)
T PRK12394 340 LKNRHV 345 (379)
T ss_pred cCcCcc
Confidence 34444
|
|
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=138.11 Aligned_cols=241 Identities=14% Similarity=0.092 Sum_probs=144.8
Q ss_pred chhcccCccEEEEC-----CCCCCCCCcHH--HHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEE
Q 020186 8 PICSVSHYGRAIVM-----PNLKPPITTTA--AAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80 (329)
Q Consensus 8 ~~Aa~GGvTtvidm-----Pnt~p~~~~~~--~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~ 80 (329)
.+|++|||||+++| |++.|..+++. .++.+.+.++ .++ +||++++. +.....+++.++.++|+ .+|
T Consensus 151 ~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~p--vn~g~~g~---g~~~~~~~L~el~~aGA-~Gf 223 (573)
T PRK13206 151 DEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWP--VNVALLGK---GNTVSAEALWEQLRGGA-GGF 223 (573)
T ss_pred HHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCc--eeEEEecC---cCcCCHHHHHHHHHCCC-cEE
Confidence 68999999999996 45566655554 3334444433 344 89999874 22345678999999995 699
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT 160 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt 160 (329)
|+|..+ +.++ ..++++|+++++.|.++.+|||+-... -.+ .. .++...|.++|++|+..
T Consensus 224 Ki~~d~-------g~t~--~~i~~aL~~A~~~gv~V~iHadtlne~--------g~~-E~---t~aa~~gr~iH~~H~eg 282 (573)
T PRK13206 224 KLHEDW-------GSTP--AAIDACLRVADAAGVQVALHSDTLNEA--------GFV-ED---TLAAIAGRSIHAYHTEG 282 (573)
T ss_pred eecCcc-------CCCH--HHHHHHHHHHHHhCCEEEEECCCcccc--------chh-hH---HHHHhcCCeEEEEeccC
Confidence 998643 2333 789999999999999999999975421 112 11 35667899999999986
Q ss_pred H---HHHHHHHcccCCc-eEEEecc-------------------hhhhcc-hhhhcCCCCCCceEEcCCCCChhhHHHHH
Q 020186 161 M---DAVKFVESCKEGF-VAATVTP-------------------QHLVLN-RNALFQGGLRPHNYCLPVLKREIHRQAVV 216 (329)
Q Consensus 161 ~---~sl~~i~~ak~~~-vt~Et~p-------------------hhL~l~-~~~~~~~~~~~~~k~~PPLR~~~dr~aLw 216 (329)
. .+=++|+-+...+ +-..|.| |||--+ .+|+. + +--++.|===..|| .|
T Consensus 283 aggghapd~~~~~~~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~---f-a~srir~~ti~ae~--~l- 355 (573)
T PRK13206 283 AGGGHAPDIITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLA---F-AESRIRPSTIAAED--VL- 355 (573)
T ss_pred CCcCcccHHHHhcCCCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhh---h-hhhhccceeeccCc--hH-
Confidence 3 3456777664311 1122222 333222 11111 0 00111110001122 23
Q ss_pred HHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHH--HHHH-----------HhcCCHHHHHHHHhhhhhhh
Q 020186 217 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLY--AKVF-----------EEMGALDKLEAFTSFNGPDF 283 (329)
Q Consensus 217 ~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll--~~~~-----------~~~~~l~~~v~~~s~nPAki 283 (329)
...|.+- +++||-..- |--|-+..-|+. .... ..+++..+.+++.+.|||+.
T Consensus 356 --~d~G~~~-~~~SDs~~~------------~~~~e~~~~~~q~a~~~~~rr~~l~g~~~~~~~~v~~al~~yT~nPA~a 420 (573)
T PRK13206 356 --HDMGAIS-MIGSDSQAM------------GRIGEVVLRTWQTAHVMKRRRGALPGDGRADNNRARRYVAKYTICPAVA 420 (573)
T ss_pred --hhCCcEE-eccCCcccc------------ccccchhhhHHHHHHHHHhccCCCCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3358887 888986431 111111111110 1111 23467899999999999999
Q ss_pred cCCCC--C------cccEEEEec
Q 020186 284 YGLPR--N------TSKIKLTKI 298 (329)
Q Consensus 284 fgl~~--~------dADlvi~~~ 298 (329)
+|++. | .|||++|+.
T Consensus 421 lG~~~~~GsLe~Gk~ADlVvld~ 443 (573)
T PRK13206 421 HGIDHEIGSVEVGKLADLVLWEP 443 (573)
T ss_pred hCCCcCCcccCCCCcCCEEEECc
Confidence 99852 3 699999953
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=135.88 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=102.4
Q ss_pred cchhcccCccEEEEC---C----CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIVM---P----NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvidm---P----nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
..+|++|||||+++| | |+.|...+++.++.+.+.+++ .+ +||++++. +.+.++++|.++.++|+ .+
T Consensus 144 ~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~-~p--in~g~~gk---g~~~~l~eL~e~~~aGA-~G 216 (567)
T cd00375 144 IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADG-LP--VNIGFLGK---GNGSSPDALAEQIEAGA-CG 216 (567)
T ss_pred HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhc-CC--ceEEEEec---CccccHHHHHHHHHcCC-EE
Confidence 468999999999998 8 677777778888888777664 34 89999864 33456889999999996 59
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
||+|..+ +. +. ..++++|+++++.|.++++||+.-.. .-.+.. .++...|.++|++|+.
T Consensus 217 fK~~eD~-------g~-t~-~~i~~aL~~A~~~dv~VaiHadtlne--------~g~~E~----t~aa~~gr~iH~~H~e 275 (567)
T cd00375 217 LKLHEDW-------GA-TP-AAIDTCLSVADEYDVQVAIHTDTLNE--------SGFVED----TIAAIKGRTIHTYHTE 275 (567)
T ss_pred EEecCCC-------CC-CH-HHHHHHHHHHHhhCCEEEEECCCCCc--------chHHHH----HHHHhcCCeEEEEecC
Confidence 9998643 23 33 78999999999999999999996432 112221 3577789999999998
Q ss_pred CH---HHHHHHHccc
Q 020186 160 TM---DAVKFVESCK 171 (329)
Q Consensus 160 t~---~sl~~i~~ak 171 (329)
.. .+=++|+-+.
T Consensus 276 gaggghapdi~~~~~ 290 (567)
T cd00375 276 GAGGGHAPDIIKVAG 290 (567)
T ss_pred CCCcccchHHHHhcC
Confidence 63 3344555553
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=136.21 Aligned_cols=241 Identities=11% Similarity=0.072 Sum_probs=148.6
Q ss_pred cchhcccCccEEEE-----CCCCCCCCCcHHH--HHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIV-----MPNLKPPITTTAA--AVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvid-----mPnt~p~~~~~~~--l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
..+|++|||||+++ |||++|+.+++.. ++.+.+.+++ .+ +||++++. +...++++|.++.++|+ .+
T Consensus 144 ~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~p--vn~gf~gk---G~~~~l~eL~el~~aGA-~G 216 (568)
T PRK13985 144 IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YS--MNLGFLGK---GNSSNDASLADQIEAGA-IG 216 (568)
T ss_pred HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cC--ccEEEecC---CccCCHHHHHHHHHcCC-EE
Confidence 35799999999999 7899998877664 4556555543 33 89998864 22345788999999996 59
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
||++..+ +. +. ..++++|++++++|.++++||++-.. .-.+.. .++...|.++|++|+.
T Consensus 217 fK~~ed~-------g~-t~-~~I~~aL~vA~~~dv~V~iHtdtlne--------~g~~E~----t~aa~~gr~iH~~H~e 275 (568)
T PRK13985 217 FKIHEDW-------GT-TP-SAINHALDVADKYDVQVAIHTDTLNE--------AGCVED----TMAAIAGRTMHTFHTE 275 (568)
T ss_pred EEECCcc-------CC-CH-HHHHHHHHHHHHcCCEEEEeCCCCCC--------chhhHH----HHHHhcCCeEEEEecc
Confidence 9988533 22 33 78999999999999999999997532 111211 3566789999999998
Q ss_pred C---HHHHHHHHcccCC-----------ceEEEe---------cchhhhcc-hhhhcCCCCCCceEEcCCCCChhh-H-H
Q 020186 160 T---MDAVKFVESCKEG-----------FVAATV---------TPQHLVLN-RNALFQGGLRPHNYCLPVLKREIH-R-Q 213 (329)
Q Consensus 160 t---~~sl~~i~~ak~~-----------~vt~Et---------~phhL~l~-~~~~~~~~~~~~~k~~PPLR~~~d-r-~ 213 (329)
. ..+=++|+-+... +.|.-| .-|||--+ .+|+. + + .--+|.+.- - +
T Consensus 276 gaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~a---f---a--~srir~~tiaaed 347 (568)
T PRK13985 276 GAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQ---F---A--DSRIRPQTIAAED 347 (568)
T ss_pred CCCccchhhHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhh---h---h--hhhccccccccCc
Confidence 6 3445677766431 122222 12444322 12221 0 0 011232211 1 1
Q ss_pred HHHHHHHcCCCCeEEecCCCCCC---------cC--ccccc-CCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhh
Q 020186 214 AVVSAVTSGSRKFFLGTDSAPHE---------RG--RKECA-CGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGP 281 (329)
Q Consensus 214 aLw~al~~G~Id~~i~SDHaPh~---------~~--eK~~~-~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPA 281 (329)
-|.+ .|.|. +++||...-- +. .|... .| +++.- ..-...+++++.+++.+.|||
T Consensus 348 ~l~d---~G~~s-~~~SDs~~mgr~ge~~~r~~q~a~k~~~~~g--~l~~~--------~~~~dnl~v~eAL~~yTin~A 413 (568)
T PRK13985 348 TLHD---MGIFS-ITSSDSQAMGRVGEVITRTWQTADKNKKEFG--RLKEE--------KGDNDNFRIKRYLSKYTINPA 413 (568)
T ss_pred hhhh---CCcEE-EEeccchhhCcccceeeehHHHHHHHHHhcC--CCCCc--------cccccccCHHHHHHHHhHHHH
Confidence 2333 39998 9999975221 10 01000 01 11110 000135678899999999999
Q ss_pred hhcCCCC--C------cccEEEEe
Q 020186 282 DFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 282 kifgl~~--~------dADlvi~~ 297 (329)
+.+|+.. | .||||||+
T Consensus 414 ~A~G~e~~vGSLe~GK~ADlVv~d 437 (568)
T PRK13985 414 IAHGISEYVGSVEVGKVADLVLWS 437 (568)
T ss_pred HHcCcccCceeECCCCccCEEEEc
Confidence 9999832 3 69999994
|
|
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=132.91 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=96.7
Q ss_pred chhcccCccEEEEC---CCCCC-CCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEe
Q 020186 8 PICSVSHYGRAIVM---PNLKP-PITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 8 ~~Aa~GGvTtvidm---Pnt~p-~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
.+|++|||||+++| | +.| ..++++.++.+.+.++. .+ +||++++. +...++++|.++.++|+ .+||+|
T Consensus 149 ~aALagGVTTVi~gg~gP-t~p~~t~g~~~i~~~l~aa~~-~p--vN~g~~gk---G~~s~~aeL~eli~aGA-~GfKi~ 220 (569)
T PRK13308 149 DHALASGITTMLGGGLGP-TVGIDSGGPFNTGRMLQAAEA-WP--VNFGFLGR---GNSSKPAALIEQVEAGA-CGLKIH 220 (569)
T ss_pred HHHHcCCCcEEecCCcCC-CCCCCCCCHHHHHHHHHHHhc-CC--ccEEEEcC---CcccCHHHHHHHHHCCC-CEEeec
Confidence 68999999999995 6 444 46778888887776653 34 89999865 22245789999999995 599998
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC---
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT--- 160 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt--- 160 (329)
+.+ +. +. ..+.++|++++++|.++++||+.-.. .-.+.. .++...|.++|++|+.+
T Consensus 221 ed~-------g~-t~-~~i~~aL~~A~~~dv~VaiHadtlne--------~g~~E~----t~~a~~gr~iH~~H~egagg 279 (569)
T PRK13308 221 EDW-------GA-MP-AAIDTCLEVADEYDFQVQLHTDTLNE--------SGFVED----TLAAIGGRTIHMYHTEGAGG 279 (569)
T ss_pred CCC-------CC-CH-HHHHHHHHHHHhcCCEEEEeCCCcCc--------chHHHH----HHHHhcCCeEEEEeccCCcc
Confidence 643 22 33 78999999999999999999997421 111221 24556699999999986
Q ss_pred ---HHHHHHHHc
Q 020186 161 ---MDAVKFVES 169 (329)
Q Consensus 161 ---~~sl~~i~~ 169 (329)
++.++++.+
T Consensus 280 ghapd~l~~~~~ 291 (569)
T PRK13308 280 GHAPDIIRVVGE 291 (569)
T ss_pred CchhHHHHHhCC
Confidence 445555543
|
|
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-12 Score=124.02 Aligned_cols=240 Identities=12% Similarity=0.051 Sum_probs=128.7
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHH-HHHHh--hCCCCccEEEEEEEEeCCCC-------CHHHHHHH--
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYR-ESILK--ALPASSNFTPLMTLYLTDTT-------SPDEIKLA-- 71 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~-~~~~~--~~~~~vd~~~~~~~~~~~~~-------~~~el~~l-- 71 (329)
.++..+|++||+|||+||||+.+ ++.+.+..+. ++... .+. +||++++.+ .... ..+++.++
T Consensus 52 ~~~~~~a~~~GvTtvvd~~~~~~--~~~~~~~~~~~~~~~~~v~a~--~~~~~~g~~--~~~~~~~~~~~~~~~l~~~~~ 125 (338)
T cd01307 52 DRPDMIGVKSGVTTVVDAGSAGA--DNIDGFRYTVIERSATRVYAF--LNISRVGLV--AQDELPDPDNIDEDAVVAAAR 125 (338)
T ss_pred CCHhHHHHcCceeEEEeCCCCCC--CCHHHHHHHHHHhhhceEEEE--Eeeeccccc--cccccCChhHCCHHHHHHHHH
Confidence 35667899999999999997665 5555533333 33333 222 799888754 2111 11223222
Q ss_pred -HhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC
Q 020186 72 -RKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ 150 (329)
Q Consensus 72 -~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~ 150 (329)
...| +.+||+|+....+. ...+ ..+.+.++.++++|.++++|+++... + +..++ .+.+.-.
T Consensus 126 e~~~g-i~gik~~~~~~~~~-~~~~----~~l~~~~~~a~~~~~pi~vH~~~~~~-------~---~~~~~--~~l~~g~ 187 (338)
T cd01307 126 EYPDV-IVGLKARASKSVVG-EWGI----KPLELAKKIAKEADLPLMVHIGSPPP-------I---LDEVV--PLLRRGD 187 (338)
T ss_pred HCcCc-EEEEEEEeeccccc-ccCC----cHHHHHHHHHHHcCCCEEEEeCCCCC-------C---HHHHH--HHhcCCC
Confidence 3357 56999998532211 1122 23778888999999999999998742 1 22222 1222222
Q ss_pred CeEEEEecCCHHH-------HHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC
Q 020186 151 LKVVMEHITTMDA-------VKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 223 (329)
Q Consensus 151 ~~lhi~HvSt~~s-------l~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~ 223 (329)
...|..+-+.... .+.++++.+..++..++.+ .... ......+++..|.
T Consensus 188 ~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G---------------~~~~---------~~~~~~~l~~~G~ 243 (338)
T cd01307 188 VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHG---------------TASF---------SFRVARAAIAAGL 243 (338)
T ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCC---------------CCch---------hHHHHHHHHHCCC
Confidence 3334443322000 1222222223344442210 0000 0011233456786
Q ss_pred -CCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEE
Q 020186 224 -RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIK 294 (329)
Q Consensus 224 -Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlv 294 (329)
.+ +++||..+-. + ...+.. .++.+...+ ...++++++.++++.||||+||+++ | .|||+
T Consensus 244 ~~~-~lstD~~~~~---~---~~~p~~-----~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~lgl~~~G~l~~G~~ad~~ 311 (338)
T cd01307 244 LPD-TISSDIHGRN---R---TNGPVY-----ALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLT 311 (338)
T ss_pred CCe-eecCCccccC---C---CCCccc-----cHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCcCCEE
Confidence 46 8899973211 1 011111 122222222 3477999999999999999999953 3 69999
Q ss_pred EE---ecceeec
Q 020186 295 LT---KIPWKVP 303 (329)
Q Consensus 295 i~---~~~~~v~ 303 (329)
++ +.++++.
T Consensus 312 v~~~~~~~~~~~ 323 (338)
T cd01307 312 VFDLKDGRVELV 323 (338)
T ss_pred EEeCCCCCeEEE
Confidence 99 2445444
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-12 Score=129.81 Aligned_cols=246 Identities=14% Similarity=0.055 Sum_probs=147.3
Q ss_pred cchhcccCccEEEE-------CCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIV-------MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvid-------mPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
..+|++|||||+++ |||+.|.......++.+.+.+++ .+ +||++++. +......+|.++.++|+ .+
T Consensus 148 ~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~-~p--vn~g~~gk---g~~~~~~~l~el~~aGa-~g 220 (572)
T PRK13309 148 AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEG-LP--VNVGILGK---GNSYGRGPLLEQAIAGV-AG 220 (572)
T ss_pred HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhcc-CC--cCEEEEcC---CCCCCHHHHHHHHhcCc-EE
Confidence 35899999999995 55776777777788877777654 34 89998864 22234678889999996 59
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
||+|..+ +. +. ..+++++++++++|.++.+||+.-.. ...+.. .+++..+.++|++|..
T Consensus 221 fk~~~d~-------g~-t~-~~L~~aLe~A~~~gv~VaiH~d~lnE--------~g~vE~----~~aa~~grpih~~H~~ 279 (572)
T PRK13309 221 YKVHEDW-------GA-TA-AALRHALRVADEVDIQVAVHTDSLNE--------CGYVED----TIDAFEGRTIHTFHTE 279 (572)
T ss_pred EEecCcC-------Cc-CH-HHHHHHHHHHHhcCCEEEEeCCcccc--------chhHHH----HHHHhCCCceeeeecc
Confidence 9998643 22 33 78999999999999999999997632 222222 3578889999999997
Q ss_pred C---HHHHHHHHcccCCc-eEEEecc-------------------hhhhcc-hhhhcCCCCCCceEEcCCCCChhhHHHH
Q 020186 160 T---MDAVKFVESCKEGF-VAATVTP-------------------QHLVLN-RNALFQGGLRPHNYCLPVLKREIHRQAV 215 (329)
Q Consensus 160 t---~~sl~~i~~ak~~~-vt~Et~p-------------------hhL~l~-~~~~~~~~~~~~~k~~PPLR~~~dr~aL 215 (329)
. ..+=++|+-+...+ +-..|.| |||--+ .+|.. +.. ==||.+ |-+-
T Consensus 280 Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~------~a~--srig~e--~~~a 349 (572)
T PRK13309 280 GAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVA------FAE--SRVRPE--TIAA 349 (572)
T ss_pred CcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChh------HHH--HhhCch--hhcc
Confidence 5 33445555553311 1122222 333221 11110 000 002222 2233
Q ss_pred H-HHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHH------H--HHHhcCCHHHHHHHHhhhhhhhcCC
Q 020186 216 V-SAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYA------K--VFEEMGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 216 w-~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~------~--~~~~~~~l~~~v~~~s~nPAkifgl 286 (329)
| ..+..|.+- +++||+.--.+ .-..+ +.++++..-.-. . .....+++.+.+++.+.|||+.+|+
T Consensus 350 ~~~l~daGa~~-~~gSD~pv~gr-~~~~p-----~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~ 422 (572)
T PRK13309 350 ENVLHDMGVIS-MFSSDSQAMGR-VGENW-----LRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGV 422 (572)
T ss_pred hhHHHhCCCEE-EEcCCCCcccC-CcccH-----HHHHHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCc
Confidence 3 335568887 99999732110 00000 001110110000 0 0013457888999999999999998
Q ss_pred C-C-C------cccEEEEe
Q 020186 287 P-R-N------TSKIKLTK 297 (329)
Q Consensus 287 ~-~-~------dADlvi~~ 297 (329)
. + | .|||+||+
T Consensus 423 e~~~GsLe~Gk~ADlvvld 441 (572)
T PRK13309 423 SHVIGSVEVGKMADLVLWE 441 (572)
T ss_pred ccCccccCCCCcCCEEEEc
Confidence 3 2 3 69999994
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=128.66 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=95.0
Q ss_pred cchhcccCccEEEEC---CCC--CCCCCcH--HHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIVM---PNL--KPPITTT--AAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvidm---Pnt--~p~~~~~--~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
..+|++|||||+++| |++ .|..+++ ..++.+.+.+++ .. +||++++. +.....+++.++.++|+ .+
T Consensus 144 ~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~-~p--in~g~~g~---g~~~~~~~L~e~i~aGA-~g 216 (568)
T PRK13207 144 IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADA-FP--MNIGFLGK---GNASLPEALEEQIEAGA-IG 216 (568)
T ss_pred HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhc-CC--ceEEEEcC---CCcccHHHHHHHHHcCC-CE
Confidence 468999999999999 754 4554443 345555554432 33 89998864 22345788999999996 59
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
||+|..+ +.+ . ..+.++|+++++.|.++++||+.-.. .-.+. . .++...|..+|++|+.
T Consensus 217 fKi~~d~-------g~t-~-~~l~~aL~~A~~~gv~V~iHa~tlne--------~G~~e-~---t~~a~~g~~iH~~H~e 275 (568)
T PRK13207 217 LKLHEDW-------GAT-P-AAIDNCLSVADEYDVQVAIHTDTLNE--------SGFVE-D---TIAAFKGRTIHTFHTE 275 (568)
T ss_pred EeecCCC-------CCC-H-HHHHHHHHHHHHhCCEEEEeCCCccc--------chHHH-H---HHHhcCCCEEEEEeec
Confidence 9999643 223 3 78999999999999999999986431 11111 1 3567789999999987
Q ss_pred ------CHHHHHHHHc
Q 020186 160 ------TMDAVKFVES 169 (329)
Q Consensus 160 ------t~~sl~~i~~ 169 (329)
.++-++++.+
T Consensus 276 gaggghapdii~~~~~ 291 (568)
T PRK13207 276 GAGGGHAPDIIKVAGE 291 (568)
T ss_pred CCCcCCchHHHHHhhc
Confidence 4555666654
|
|
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=115.06 Aligned_cols=225 Identities=20% Similarity=0.234 Sum_probs=138.1
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCC------CH----HHHHHHHhc
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTT------SP----DEIKLARKT 74 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~------~~----~el~~l~~~ 74 (329)
+.+..++.+||||+++|++..+.....+.++...+.+.+... +.+.+..++ .... .. +++..+.+.
T Consensus 39 ~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~ 114 (275)
T cd01292 39 RALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG--IRVVLGLGI--PGVPAAVDEDAEALLLELLRRGLEL 114 (275)
T ss_pred HHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC--eeeEEeccC--CCCccccchhHHHHHHHHHHHHHhc
Confidence 345678999999999999877665544555555555544212 444443332 2111 12 223333333
Q ss_pred CceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEE
Q 020186 75 GVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVV 154 (329)
Q Consensus 75 G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lh 154 (329)
| +.++|++..+. ....++ +.++++++.+++.|.++.+|+.+.... ...+.+++ .+... +.+++
T Consensus 115 ~-~~gi~~~~~~~----~~~~~~--~~~~~~~~~a~~~~~~i~~H~~~~~~~-------~~~~~~~~--~~~~~-~~~~~ 177 (275)
T cd01292 115 G-AVGLKLAGPYT----ATGLSD--ESLRRVLEEARKLGLPVVIHAGELPDP-------TRALEDLV--ALLRL-GGRVV 177 (275)
T ss_pred C-CeeEeeCCCCC----CCCCCc--HHHHHHHHHHHHcCCeEEEeeCCcccC-------ccCHHHHH--HHHhc-CCCEE
Confidence 6 46888875331 111234 789999999999999999999876420 01123333 22332 78999
Q ss_pred EEecCC--HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCC
Q 020186 155 MEHITT--MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDS 232 (329)
Q Consensus 155 i~HvSt--~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDH 232 (329)
+.|... .+.++.+++ ..+++++||+++.++. +....+..+.+.+..|... +++||+
T Consensus 178 ~~H~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~-~lgTD~ 235 (275)
T cd01292 178 IGHVSHLDPELLELLKE---AGVSLEVCPLSNYLLG------------------RDGEGAEALRRLLELGIRV-TLGTDG 235 (275)
T ss_pred EECCccCCHHHHHHHHH---cCCeEEECCccccccc------------------CCcCCcccHHHHHHCCCcE-EEecCC
Confidence 999997 788888775 4789999999876542 1223345577788889887 999999
Q ss_pred CCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhh
Q 020186 233 APHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDF 283 (329)
Q Consensus 233 aPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAki 283 (329)
.+... + ..+-..+-.+.......++++++.++++.||||.
T Consensus 236 ~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 236 PPHPL----------G-TDLLALLRLLLKVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred CCCCC----------C-CCHHHHHHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence 66530 0 1100011111111111369999999999999984
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-11 Score=123.97 Aligned_cols=227 Identities=11% Similarity=0.077 Sum_probs=135.5
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEE------eCCCC--CHHHHHHHHhc-Cce
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLY------LTDTT--SPDEIKLARKT-GVV 77 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~------~~~~~--~~~el~~l~~~-G~v 77 (329)
+.+++.||+|||++|||+.|.++..+.++.+.+.++ .++ +||.+..... -+.+. ..+++.++.+. | +
T Consensus 70 ~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~-~~~--~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~-V 145 (552)
T TIGR01178 70 AKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAK-KTP--LNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDE-V 145 (552)
T ss_pred HHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhh-cCC--cEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCC-c
Confidence 357899999999999999999999999988888665 345 8874332200 00111 46788888865 7 5
Q ss_pred eEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 020186 78 FAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEH 157 (329)
Q Consensus 78 ~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~H 157 (329)
.++|.||+|. +....| ..+.+.++.+++.|.++.+||+.-. .. .+.. +++ .|.. .+|
T Consensus 146 ~glke~m~~~----~v~~~d--~~~l~~i~~a~~~g~~I~gHap~l~------~~---eL~~----~~~--aGi~--~dH 202 (552)
T TIGR01178 146 LGLAEVMDYP----GVINAD--IEMLNKINSARKRNKVIDGHCPGLS------GK---LLNK----YIS--AGIS--NDH 202 (552)
T ss_pred cEEEEEecch----hhcCCC--HHHHHHHHHHHhCCCEEEecCCCCC------HH---HHHH----HHH--cCCC--CCc
Confidence 7999999752 222334 6677778999999999999999432 11 1221 122 2443 456
Q ss_pred cC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH--cCCCCeEEecCC-
Q 020186 158 IT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT--SGSRKFFLGTDS- 232 (329)
Q Consensus 158 vS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~--~G~Id~~i~SDH- 232 (329)
-+ -.++.+.++. -++..+ ++ |+. ..+-+.+..++. ++.-. +++||-
T Consensus 203 e~~s~~ea~e~~~~----Gm~~~i-------------r~--gs~---------~~n~~~~~~~~~~~~~~~~-~l~TD~~ 253 (552)
T TIGR01178 203 ESTSIEEAREKLRL----GMKLMI-------------RE--GSA---------AKNLEALHPLINEKNCRSL-MLCTDDR 253 (552)
T ss_pred CcCCHHHHHHHHHC----CCEEEE-------------eC--Ccc---------ccCHHHHHHHHhhcCCceE-EEEeCCC
Confidence 43 3455554442 122221 11 111 112233444443 33445 999992
Q ss_pred CCCCcCcccccCCcCCccchhHHHHHHH-HHHHhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe--cceee
Q 020186 233 APHERGRKECACGCAGIYNAPVALSLYA-KVFEEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK--IPWKV 302 (329)
Q Consensus 233 aPh~~~eK~~~~~~~Gi~~~e~~lpll~-~~~~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~--~~~~v 302 (329)
-|...-+. | .+.-.. ......+++++++++.|.|||+.+|++. | .|||++++ +.+++
T Consensus 254 ~~~~~~~~-------g------~l~~~v~~ai~~g~~~~~Al~maT~npA~~lgl~~~G~I~pG~~ADlvvl~~l~~~~v 320 (552)
T TIGR01178 254 HVNDILNE-------G------HINHIVRRAIEHGVDPFDALQMASINPAEHFGIDVGGLIAPGDPADFVILKDLRNFKV 320 (552)
T ss_pred ChhHHHhc-------C------CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEECCCCCceE
Confidence 12111000 1 122222 2233467999999999999999999953 3 79999994 44544
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-11 Score=115.94 Aligned_cols=196 Identities=18% Similarity=0.155 Sum_probs=119.2
Q ss_pred EEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEec-CCCCCCCChhHHH---HHHHHHHHHHHHHhcCCCeEE
Q 020186 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHG-EVTDPIVDIFDRE---KVFIDTILQPLIQRLPQLKVV 154 (329)
Q Consensus 79 ~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHa-Ed~~~~~~~~~~E---~~av~~~~~~~la~~~~~~lh 154 (329)
.+|++++.. +...++ . +.+.++++.+++.|.++.+|+ |+.... . ...+ ...+.. + .-....+.++.
T Consensus 178 ~~k~~~~~~---~~~~~~-~-~~l~~~~~~A~~~g~~v~~H~~e~~~~~-~-~~~~~~~~~~~~~-~--~~~~~~~~~~~ 247 (411)
T cd01298 178 RIRVALAPH---APYTCS-D-ELLREVAELAREYGVPLHIHLAETEDEV-E-ESLEKYGKRPVEY-L--EELGLLGPDVV 247 (411)
T ss_pred ceEEEEeCC---CCccCC-H-HHHHHHHHHHHHcCCcEEEEecCCHHHH-H-HHHHHhCCCHHHH-H--HHcCCCCCCeE
Confidence 579887532 112233 3 789999999999999999996 543210 0 0000 001111 1 11223457766
Q ss_pred EEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCC
Q 020186 155 MEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDS 232 (329)
Q Consensus 155 i~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDH 232 (329)
|.|.+ +.+.++.+++ ..+++++||++-.. ++. ..|| +++.+..|..- +++||+
T Consensus 248 i~H~~~l~~~~~~~l~~---~gi~~~~~p~~~~~---------~~~---~~~~---------~~~~~~~Gv~~-~~GsD~ 302 (411)
T cd01298 248 LAHCVWLTDEEIELLAE---TGTGVAHNPASNMK---------LAS---GIAP---------VPEMLEAGVNV-GLGTDG 302 (411)
T ss_pred EEEecCCCHHHHHHHHH---cCCeEEEChHHhhh---------hhh---CCCC---------HHHHHHCCCcE-EEeCCC
Confidence 66666 4566666664 46889999985221 111 1244 44667778886 999998
Q ss_pred CCCCcCcccccCCcCCccch-hHHHHHHHHHH-H---hcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEE--ec
Q 020186 233 APHERGRKECACGCAGIYNA-PVALSLYAKVF-E---EMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLT--KI 298 (329)
Q Consensus 233 aPh~~~eK~~~~~~~Gi~~~-e~~lpll~~~~-~---~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~--~~ 298 (329)
.+... ....+ |..+++++... . ..+++++++++.+.|||+.+|++ .| +|||+|+ +.
T Consensus 303 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~ 372 (411)
T cd01298 303 AASNN----------NLDMFEEMRLAALLQKLAHGDPTALPAEEALEMATIGGAKALGLDEIGSLEVGKKADLILIDLDG 372 (411)
T ss_pred CccCC----------CcCHHHHHHHHHHHhccccCCCCcCCHHHHHHHHHhhHHHHhCCccCCCcCCCccCCEEEEeCCC
Confidence 64321 11111 33344333211 1 15799999999999999999986 33 6999999 46
Q ss_pred ceeecCCccCcCCcccccCCCc
Q 020186 299 PWKVPEAFSFSFGDIIPMFAGN 320 (329)
Q Consensus 299 ~~~v~~~~~~s~~~~spf~~G~ 320 (329)
.|.+..++++++..|+++ .+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~-~~~ 393 (411)
T cd01298 373 PHLLPVHDPISHLVYSAN-GGD 393 (411)
T ss_pred CccCCccchhhHheEecC-CCC
Confidence 788777788777766665 443
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-11 Score=117.12 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=137.2
Q ss_pred cccchhcccCcc---EEEE-CCCCCCCCCcHHHHHHHHHHHHhhCC-CC-ccEEEEEEEEeCCCCCHHHHHHHH-hcCce
Q 020186 5 TILPICSVSHYG---RAIV-MPNLKPPITTTAAAVAYRESILKALP-AS-SNFTPLMTLYLTDTTSPDEIKLAR-KTGVV 77 (329)
Q Consensus 5 ~~~~~Aa~GGvT---tvid-mPnt~p~~~~~~~l~~~~~~~~~~~~-~~-vd~~~~~~~~~~~~~~~~el~~l~-~~G~v 77 (329)
.++.+|+++|+| +.+| ++... ..+.+.+....+....... .+ ++|.+++.. ....+++.++. +.|.+
T Consensus 126 ~~~~~a~~~Gtt~vRt~vd~~~~~~--~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~----~~~~~eL~~~v~~~~gv 199 (438)
T PRK07583 126 FGLRCAYAHGTSAIRTHLDSFAPQA--AISWEVFAELREAWAGRIALQAVSLVPLDAYL----TDAGERLADLVAEAGGL 199 (438)
T ss_pred HHHHHHHHhChhhEEeeeccCCCCc--ccHHHHHHHHHHHhhccCeEEEEEecChhhcc----CchHHHHHHHHHHcCCE
Confidence 467889999999 6666 33222 2233333222332222100 00 234444332 22235666665 34335
Q ss_pred eEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEec-CCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 020186 78 FAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHG-EVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVME 156 (329)
Q Consensus 78 ~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHa-Ed~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~ 156 (329)
.++|.|+.+ .++ +.++++++.+++.|.++.+|+ |+.+.. + ..+.+........-...++++.
T Consensus 200 ~g~~~~~~~---------~~d-~~l~~i~~lA~~~G~~v~vH~~E~~~~~------~-~~l~~~~~~~~~~G~~~~v~i~ 262 (438)
T PRK07583 200 LGGVTYMNP---------DLD-AQLDRLFRLARERGLDLDLHVDETGDPA------S-RTLKAVAEAALRNGFEGKVTCG 262 (438)
T ss_pred EeCCCCCCC---------CHH-HHHHHHHHHHHHhCCCcEEeECCCCCch------H-HHHHHHHHHHHHhCCCCCEEEE
Confidence 687766532 123 789999999999999999999 544321 1 1122222101122233579999
Q ss_pred ecCCH---------HHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE
Q 020186 157 HITTM---------DAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF 227 (329)
Q Consensus 157 HvSt~---------~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~ 227 (329)
|...- +.++.+++ ..++.-+||...+..... .....|+.|.....+.|++ .|.-. +
T Consensus 263 H~~~l~~~~~~~~~~~i~~la~---~gv~vv~~P~~~~~l~~~--------~~~~~p~~~~~~~v~~l~~---aGV~v-a 327 (438)
T PRK07583 263 HCCSLAVQPEEQAQATIALVAE---AGIAIVSLPMCNLYLQDR--------QPGRTPRWRGVTLVHELKA---AGIPV-A 327 (438)
T ss_pred eccchhcCCHHHHHHHHHHHHH---cCCeEEECcchhhhhcCC--------CcCCCCCCCCcchHHHHHH---CCCeE-E
Confidence 98652 34555544 567778899864332111 1112466666555555554 48776 9
Q ss_pred EecCCCCCCcCcccccCCcCC-ccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 228 LGTDSAPHERGRKECACGCAG-IYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 228 i~SDHaPh~~~eK~~~~~~~G-i~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
++|||.+- +|.+.| ...++.+..+.. ......++++++++.+.|||+++|++. | .|||+|+|
T Consensus 328 lGtD~~~d-------~~~p~g~~~~~~~~~~a~~-~~~~~~~~~~al~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d 397 (438)
T PRK07583 328 VASDNCRD-------PFYAYGDHDMLEVFREAVR-ILHLDHPYDDWPAAVTTTPADIMGLPDLGRIAVGAPADLVLFK 397 (438)
T ss_pred EEeCCCCC-------CCCCCCCcCHHHHHHHHHH-HHhcCCcHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEc
Confidence 99999641 222223 222233332221 111246889999999999999999853 3 69999994
|
|
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-10 Score=106.78 Aligned_cols=233 Identities=15% Similarity=0.091 Sum_probs=121.6
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCC-ccEEEEEEEEeCCC-----CCHHHHHHHHh---cC
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPAS-SNFTPLMTLYLTDT-----TSPDEIKLARK---TG 75 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~-vd~~~~~~~~~~~~-----~~~~el~~l~~---~G 75 (329)
+...+|+.|||||+++||++.| ++.+.+..+..+..+....+ +|+.+++..+-... ...+++.++.+ .|
T Consensus 72 ~~~~~~~~~G~Ttv~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (380)
T PRK09237 72 EPDEVGVRSGVTTVVDAGSAGA--DNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDF 149 (380)
T ss_pred CHHHHHHhCCcCEEEECCCCCC--CCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCc
Confidence 4457899999999999997554 56665554444321110001 45555443210000 12345566654 35
Q ss_pred ceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEE
Q 020186 76 VVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVM 155 (329)
Q Consensus 76 ~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi 155 (329)
+.+||.+|.+.... ..++++ ..+.+.+ +++.|+++.+|+++... +...+.+ .+ +.-..-.|.
T Consensus 150 -v~glk~~~~~~v~~-~~~~~~--~~~~~~~--a~~~g~~v~~H~~~~~~-------~~~~l~~----~l-~~g~~~~H~ 211 (380)
T PRK09237 150 -IVGIKARMSSSVVG-DNGIEP--LELAKAI--AAEANLPLMVHIGNPPP-------SLEEILE----LL-RPGDILTHC 211 (380)
T ss_pred -EEEEEEEEeccccc-ccCCch--HHHHHHH--HHhcCCCEEEEcCCCCC-------CHHHHHh----hc-cCCCEEEec
Confidence 57999999653221 222333 3444444 34889999999998742 1122222 12 222233444
Q ss_pred EecCC-----------HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC-
Q 020186 156 EHITT-----------MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS- 223 (329)
Q Consensus 156 ~HvSt-----------~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~- 223 (329)
.|-+. ..+.+.++ ..++.+.+.+ .... +-+.+.+.+..|.
T Consensus 212 ~~~~~~~~~~~~~~~~~~a~~~l~----~G~~~~ig~g---------------~~~~---------~~~~~~~l~~~g~~ 263 (380)
T PRK09237 212 FNGKPNRILDEDGELRPSVLEALE----RGVRLDVGHG---------------TASF---------SFKVAEAAIAAGIL 263 (380)
T ss_pred CCCCCCCccCCCCcchHHHHHHHH----CCEEEEecCC---------------CCcc---------cHHHHHHHHHCCCC
Confidence 44333 12222222 2334443211 1000 1112234456674
Q ss_pred CCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHH-HHHhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEE
Q 020186 224 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK-VFEEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKL 295 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-~~~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi 295 (329)
.+ +++||..|-.. + ..++. .++.... .....++++++++.++.|||++||+++ | .|||++
T Consensus 264 ~~-~l~tD~~~~~~--~----~~~~~-----~l~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~~G~l~~G~~ADlvv 331 (380)
T PRK09237 264 PD-TISTDIYCRNR--I----NGPVY-----SLATVMSKFLALGMPLEEVIAAVTKNAADALRLPELGRLQVGSDADLTL 331 (380)
T ss_pred ce-EEECCCCCCCc--c----cchHh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCCCcCCCCCcCCEEE
Confidence 57 89999754221 0 00111 1222222 223467999999999999999999952 3 699999
Q ss_pred Ee
Q 020186 296 TK 297 (329)
Q Consensus 296 ~~ 297 (329)
++
T Consensus 332 ~~ 333 (380)
T PRK09237 332 FT 333 (380)
T ss_pred Ee
Confidence 93
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=113.96 Aligned_cols=155 Identities=13% Similarity=0.139 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhHcCCcEEEec-CCCCCCCChhHHHHHHHHH-----HHHHHHH--hcCCCeEEEEecC--CHHHHHHHHc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHG-EVTDPIVDIFDREKVFIDT-----ILQPLIQ--RLPQLKVVMEHIT--TMDAVKFVES 169 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHa-Ed~~~~~~~~~~E~~av~~-----~~~~~la--~~~~~~lhi~HvS--t~~sl~~i~~ 169 (329)
+.+.++++.+++.|.++.+|+ |+.. |...+.+ .+. .+. ...+.++++.|.+ +.+.++++++
T Consensus 199 ~~l~~~~~~a~~~g~~v~~H~~e~~~--------~~~~~~~~~g~~~~~-~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~ 269 (445)
T PRK07228 199 ELLRGVRDLADEYGVRIHTHASENRG--------EIETVEEETGMRNIH-YLDEVGLTGEDLILAHCVWLDEEEREILAE 269 (445)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHH--------HHHHHHHHhCCCHHH-HHHHCCCCCCCcEEEEEecCCHHHHHHHHH
Confidence 789999999999999999999 4331 2222211 010 122 2457789999998 8888998876
Q ss_pred ccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCc
Q 020186 170 CKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249 (329)
Q Consensus 170 ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi 249 (329)
. .+..-+||+. .+. .+ .....+++.+..|... .++|||.|+.... .+ +
T Consensus 270 ~---g~~v~~~P~~------~~~---~~------------~~~~p~~~~~~~Gv~v-~lGtD~~~~~~~~--~~-----~ 317 (445)
T PRK07228 270 T---GTHVTHCPSS------NLK---LA------------SGIAPVPDLLERGINV-ALGADGAPCNNTL--DP-----F 317 (445)
T ss_pred c---CCeEEEChHH------hhh---cc------------cccCcHHHHHHCCCeE-EEcCCCCccCCCc--cH-----H
Confidence 4 4556689962 111 01 1123578889999998 9999997763211 01 0
Q ss_pred cchhHHHHHHHHHH-H---hcCCHHHHHHHHhhhhhhhcCC-CC-C------cccEEEEe
Q 020186 250 YNAPVALSLYAKVF-E---EMGALDKLEAFTSFNGPDFYGL-PR-N------TSKIKLTK 297 (329)
Q Consensus 250 ~~~e~~lpll~~~~-~---~~~~l~~~v~~~s~nPAkifgl-~~-~------dADlvi~~ 297 (329)
.+..+.+++... . ..+++++++++++.|||+.+|+ ++ | .|||+|+|
T Consensus 318 --~~~~~~~~~~~~~~~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld 375 (445)
T PRK07228 318 --TEMRQAALIQKVDRLGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILD 375 (445)
T ss_pred --HHHHHHHHHhhhccCCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEc
Confidence 123333333222 1 2579999999999999999999 32 3 79999994
|
|
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-09 Score=103.42 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=136.0
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEe--CC----CC--CHHHHHHHHhc-Cc
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYL--TD----TT--SPDEIKLARKT-GV 76 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~--~~----~~--~~~el~~l~~~-G~ 76 (329)
.+.+|+.||||||+++|++.|.....+.++.+.+.+ ++.+ +|+.+.+...+ +. +. ..+++.++.+. |
T Consensus 28 ~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a-~~~p--~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~- 103 (422)
T cd01295 28 FAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDA-KKTP--LDIFWMLPSCVPATPFETSGAELTAEDIKELLEHPE- 103 (422)
T ss_pred HHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHH-hCCC--ceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcCCC-
Confidence 356789999999999999999999999998877754 3334 78754432100 11 01 36788888774 7
Q ss_pred eeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 020186 77 VFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVME 156 (329)
Q Consensus 77 v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~ 156 (329)
+.++|-+|.+. +....+ ..+.+.++.+++.|.++.+||-... ...+.+.+ + .|.. -.
T Consensus 104 vvglgE~md~~----~v~~~~--~~l~~~i~~A~~~g~~v~~Ha~g~~---------~~~L~a~l----~--aGi~--~d 160 (422)
T cd01295 104 VVGLGEVMDFP----GVIEGD--DEMLAKIQAAKKAGKPVDGHAPGLS---------GEELNAYM----A--AGIS--TD 160 (422)
T ss_pred CcEEEEeccCc----cccCCc--HHHHHHHHHHHhCCCEEEEeCCCCC---------HHHHHHHH----H--cCCC--CC
Confidence 56999888642 111233 7889999999999999999996432 12233322 2 2322 13
Q ss_pred ecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH--cCCCCeEEecCC
Q 020186 157 HIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT--SGSRKFFLGTDS 232 (329)
Q Consensus 157 HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~--~G~Id~~i~SDH 232 (329)
|-+ ..+.++.++ ..++..+.+-. ...+.+.+.+.+. .|.-- +++||.
T Consensus 161 H~~~~~eea~e~l~----~G~~i~i~~g~------------------------~~~~~~~~~~~l~~~~~~~i-~l~TD~ 211 (422)
T cd01295 161 HEAMTGEEALEKLR----LGMYVMLREGS------------------------IAKNLEALLPAITEKNFRRF-MFCTDD 211 (422)
T ss_pred cCCCcHHHHHHHHH----CCCEEEEECcc------------------------cHhhHHHHHHhhhhccCCeE-EEEcCC
Confidence 443 555555553 22232221111 0233444555554 24554 899996
Q ss_pred CCCCcCcccccCCcCCccchhHHHHHHHHH-HHhcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe
Q 020186 233 APHERGRKECACGCAGIYNAPVALSLYAKV-FEEMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK 297 (329)
Q Consensus 233 aPh~~~eK~~~~~~~Gi~~~e~~lpll~~~-~~~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~ 297 (329)
|+... ....| .+..+... ....++++++++..+.|||++||++ .| .|||++++
T Consensus 212 -~~~~~-----~~~~g------~~~~v~r~a~~~g~s~~eal~~aT~n~A~~~gl~~~G~i~~G~~AD~vv~~ 272 (422)
T cd01295 212 -VHPDD-----LLSEG------HLDYIVRRAIEAGIPPEDAIQMATINPAECYGLHDLGAIAPGRIADIVILD 272 (422)
T ss_pred -CCchh-----hhhcc------hHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCcccCCCCcCCEEEEC
Confidence 43110 00012 12222222 2346799999999999999999984 23 69999994
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=114.19 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=94.2
Q ss_pred cchhcccCccEEEE-----CCCCCCCCCcHHHHHH--HHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIV-----MPNLKPPITTTAAAVA--YRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvid-----mPnt~p~~~~~~~l~~--~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
..+|++||+||+++ |||+.|...+...+.. +.+.+ +... +||++++. +.....+++.++.++|+ .+
T Consensus 143 ~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa-~~~~--in~g~~g~---g~~~~~~~L~e~i~aGa-~g 215 (567)
T TIGR01792 143 VQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAA-DGLP--INFGFTGK---GSGSGPAALIEQIEAGA-CG 215 (567)
T ss_pred HHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHh-ccCC--ccEEEEeC---CccchHHHHHHHHHcCC-cE
Confidence 46899999999999 7888887766554422 23333 2333 89888753 22335677888888895 69
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
||+|..| ..++ +.|++++++++++|.++.+|+|... |.-.+.. .++++.+.|+|++|.-
T Consensus 216 fK~h~~y-------~~s~--e~L~~al~~A~e~gv~V~iH~ET~~--------E~g~ve~----t~~a~g~rpIh~~H~~ 274 (567)
T TIGR01792 216 LKVHEDW-------GATP--AAIDNALSVADEYDVQVAVHTDTLN--------ESGFVED----TIAAFKGRTIHTYHTE 274 (567)
T ss_pred EEeCCCC-------CCCH--HHHHHHHHHHHHcCCEEEEeCCCcc--------cchHHHH----HHHHHCCCcchhHhhc
Confidence 9998643 2233 7899999999999999999997543 2112222 2456678999999986
Q ss_pred C---HHHHHHHHcccC
Q 020186 160 T---MDAVKFVESCKE 172 (329)
Q Consensus 160 t---~~sl~~i~~ak~ 172 (329)
. ..+=++|+-+..
T Consensus 275 G~g~ghapdi~~~~~~ 290 (567)
T TIGR01792 275 GAGGGHAPDIIVVVGY 290 (567)
T ss_pred CCCCCcHHHHHHHcCC
Confidence 4 445566665543
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-11 Score=107.54 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=133.5
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeec
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPA 85 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~ 85 (329)
...+++.+|+||+++++++.+.. +..... . . ..+..+... ........+..+.+.......++.+.
T Consensus 36 ~~~~~~~~G~tt~~~~~~~~~~~-----~~~~~~---~--~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
T PF13147_consen 36 ASAAALAGGVTTVVDMPGTNPEE-----LNRARR---R--G--AGYPGSGAG--PRGTTIEELEALVDLIAAEGVGFVAA 101 (304)
T ss_dssp HHHHHHHTTEEEEEESSSSSHHH-----HHHHHH---H--E--SEEEEECES--CCHHHHHHHHHHHHHHHHTEEEEESS
T ss_pred HHHHHHhCCEeEEecCCCCCchh-----hHHHHh---h--c--ccccccccc--ccccchHHHHHHHHHHhhcCcceeec
Confidence 45677899999999988666431 111111 1 1 223322221 11112233333333211113344432
Q ss_pred cccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC--------------hhHHHHHHHHHHHHHHHHhcCCC
Q 020186 86 GATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD--------------IFDREKVFIDTILQPLIQRLPQL 151 (329)
Q Consensus 86 ~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~--------------~~~~E~~av~~~~~~~la~~~~~ 151 (329)
+. .. +. ..+.+.++...+.+....++.++...... ....+...+.. .+....+.
T Consensus 102 ~~------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 169 (304)
T PF13147_consen 102 YN------GI-EG-PGLQAAIRAAHRAGVIKVVGHSPADGIEGAIAEGLDAMEHILPHEVAEALHLAE----ALAQGAGP 169 (304)
T ss_dssp ST------HH-HH-HHHHHHHHHHHHHTHEEEEEECHHHHHHHHHHHHHHTTHHSTHHHHHHHHHHHH----HHHHHHTH
T ss_pred cc------cC-CH-HHHHHHHHHHHhcCCeeeecccchhhHHHHHHhcccchhhhhhhhHHHHHHHHH----Hhhhcccc
Confidence 10 11 22 66778888888888444444333221000 00112222221 34555577
Q ss_pred eEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCC--ChhhHHHHHHHHHcCCCCeEEe
Q 020186 152 KVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLK--REIHRQAVVSAVTSGSRKFFLG 229 (329)
Q Consensus 152 ~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR--~~~dr~aLw~al~~G~Id~~i~ 229 (329)
.+++.+.+.....+.+...+...+....+. ++.+.... .+..++++||++ ...++..+++++++|.+. +++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~-~l~ 242 (304)
T PF13147_consen 170 GLHCHVASDDATAEGVAIAHGFGLPPTPLH--LLARDAAA----AGIRFKVLPPLRLDLREDRAALRELLEAGVPV-ALG 242 (304)
T ss_dssp CEEEEETSSHHHHHHHHHHHHTTHEEEEEE--HHHHHHHH----HGGGGEESSCHHHHTHHHHHHHHHHHHTTSSE-EEE
T ss_pred chhhhhhhhhhhhHHHHHHHhhccccchHH--hhHHHHHh----cCceeeeCCCccccchhhhHHHHHHHhCCCeE-EEE
Confidence 777777777766532211111122222222 22222111 146899999999 999999999999999998 999
Q ss_pred cCCCCCCcCcccccCCcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCC-CC-C------cccEE
Q 020186 230 TDSAPHERGRKECACGCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGL-PR-N------TSKIK 294 (329)
Q Consensus 230 SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl-~~-~------dADlv 294 (329)
|||.|++.+ +-...+..+...+ ...++++++++.+|.||||+||+ ++ | +||||
T Consensus 243 sD~~~~~~~------------~~~~~~~~~~~~~~~~gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 243 SDHAPSSTE------------GSGDLLHEAMRLAVRAGLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp E-BBTTTTT------------CTTTHHHHHHHHHHHTSSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred cCCcccccc------------cccccchhhhhHHhhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 999998654 1112444444333 35889999999999999999998 43 3 79986
|
... |
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-08 Score=97.37 Aligned_cols=247 Identities=10% Similarity=0.065 Sum_probs=134.8
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCcc-EEEEEE-----EEeCCCCCHHHHHHHHhcCceeEE
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSN-FTPLMT-----LYLTDTTSPDEIKLARKTGVVFAV 80 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd-~~~~~~-----~~~~~~~~~~el~~l~~~G~v~~~ 80 (329)
+..+...|||||++|-.+..-....+.+..+.+.+++.. +. |...+. .|++ +....++.. .+ .+.|+
T Consensus 83 ~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~G---ir~~~~~g~~~~p~~t~t-~~~~~d~~~-~d--~iiG~ 155 (389)
T TIGR01975 83 LSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEG---ISCYMLTGAYHVPSRTIT-GSVESDLLL-ID--KVIGV 155 (389)
T ss_pred HHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhC---CEEEEEcccccCCCcccc-cchhhheee-eh--hhccc
Confidence 445688999999999765544445554444444443322 22 111111 0112 222223322 12 24577
Q ss_pred E-EeeccccccCCCCccChHHHHHHHHHHhhHcC----Cc--EEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeE
Q 020186 81 K-LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQN----MP--LLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKV 153 (329)
Q Consensus 81 K-~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~----~~--v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~l 153 (329)
| +=+....+ .-... +.|.++.+.++..| ++ ++||-.|... .+..++ .+.+.++.|.
T Consensus 156 ~~ia~sd~r~----~~~~~-~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~----------~l~~l~--~~~~~~di~~ 218 (389)
T TIGR01975 156 GEIAISDHRS----AQPTV-EHLTNMAAEARVGGLLGGKPGIVNFHVGDSKR----------ALQPIY--ELVENTDVPI 218 (389)
T ss_pred ceEEEccCcC----CCCCH-HHHHHHHHHHHHHHHhcCCCcEEEEEeCCchh----------hHHHHH--HHHHhcCCCh
Confidence 4 76543211 11223 66777777777777 67 9999998742 233344 4566677765
Q ss_pred EEE---ecC-C----HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC-C
Q 020186 154 VME---HIT-T----MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS-R 224 (329)
Q Consensus 154 hi~---HvS-t----~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~-I 224 (329)
|.- |+. + .++++.+++.-...+++..+|.+|- .+ +....+.+-.++..|. +
T Consensus 219 ~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~-----------------~~---~~~~~~~~~~~~~~Gv~~ 278 (389)
T TIGR01975 219 TQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRK-----------------EG---EVAPAEGIKKALEAGVPL 278 (389)
T ss_pred hheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchh-----------------cc---ccChHHHHHHHHHcCCCc
Confidence 554 444 3 2333333322103344333332221 00 1123345666777785 3
Q ss_pred C-eEEecCCC---CCCcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCC-CC------ccc
Q 020186 225 K-FFLGTDSA---PHERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLP-RN------TSK 292 (329)
Q Consensus 225 d-~~i~SDHa---Ph~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~-~~------dAD 292 (329)
| ++++||+. |+..++. ..-..|+.+.+.++..+...+.. +++++++++.++.|||+++|++ .| +||
T Consensus 279 ~~i~isSD~~gs~p~~~~~g--~~~~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~~~G~I~~G~~AD 356 (389)
T TIGR01975 279 EKVTFSSDGNGSQPFFDENG--ELTGLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLTGKGEISPGNDAD 356 (389)
T ss_pred ceEEEEeCCCCCCCcccccc--ccccCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCeECCCCcCC
Confidence 2 36899974 3332211 11234777777777766554443 6899999999999999999995 23 799
Q ss_pred EEEEecc
Q 020186 293 IKLTKIP 299 (329)
Q Consensus 293 lvi~~~~ 299 (329)
|+|+|..
T Consensus 357 lvild~~ 363 (389)
T TIGR01975 357 LVVLDPD 363 (389)
T ss_pred EEEEcCC
Confidence 9999543
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-08 Score=91.06 Aligned_cols=251 Identities=13% Similarity=0.040 Sum_probs=138.1
Q ss_pred hhcccCccEEEECCC---CCCCCCcHHHHHHHHHHHHhhC--CC-CccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 9 ICSVSHYGRAIVMPN---LKPPITTTAAAVAYRESILKAL--PA-SSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 9 ~Aa~GGvTtvidmPn---t~p~~~~~~~l~~~~~~~~~~~--~~-~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
..++.||||+++=-. ..+.....+..+...+.+.... .. .+|-.+|.-.-+...+..+++..+.+.+.+ .+=.
T Consensus 36 ~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v-~lvs 114 (325)
T cd01306 36 QLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVLRADHRLHLRCELADPAVLPELESLMADPRV-HLVS 114 (325)
T ss_pred HHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcchhhcceEEEEeecCccHHHHHHHHhcCCCc-CEEE
Confidence 357789999998742 1222234555555554443321 11 167777765423334557778888877644 5556
Q ss_pred eeccccccCCCCccChHHHHHHHHHHh-hHcCCcEEEecCCCCCCCCh--hHHH--HHHHHHHHHHHHHhcCCCeEEEEe
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEM-VEQNMPLLVHGEVTDPIVDI--FDRE--KVFIDTILQPLIQRLPQLKVVMEH 157 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~-~~~~~~v~vHaEd~~~~~~~--~~~E--~~av~~~~~~~la~~~~~~lhi~H 157 (329)
||.. +++.....| +.+.-+|. ++.|.- ..|-..++... ...+ .+.+.+++ ..|+..|.|+ ..|
T Consensus 115 ~~dH--~pg~~q~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iv--~~A~~~gl~v-asH 182 (325)
T cd01306 115 LMDH--TPGQRQFRD----LEKYREYYAKKYGLS---DEEVEEAILERKARAAAYAPANRSELA--ALARARGIPL-ASH 182 (325)
T ss_pred EeCC--CCccccccC----HHHHHHHHHhhcCCC---HHHHHHHHHHHHHHhhhcCHHHHHHHH--HHHHHCCCcE-EEe
Confidence 7753 222222334 22233333 222221 11100000000 0011 13355555 6788889987 457
Q ss_pred cC-CHHHHHHHHcccCCceEEEecchhhhcchhhhcC-CCCCCceEEcCC--CCChh--hHHHHHHHHHcCCCCeEEecC
Q 020186 158 IT-TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ-GGLRPHNYCLPV--LKREI--HRQAVVSAVTSGSRKFFLGTD 231 (329)
Q Consensus 158 vS-t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~-~~~~~~~k~~PP--LR~~~--dr~aLw~al~~G~Id~~i~SD 231 (329)
.. +.+.++...+. .-..+| |+ .+.+.... ...|....+.+| +|... ....+++++..|.+| +++||
T Consensus 183 ~d~~~~~v~~a~~~--Gv~~~E----~p-~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~~~~~~ll~~Gv~~-al~SD 254 (325)
T cd01306 183 DDDTPEHVAEAHEL--GVVISE----FP-TTLEAAKAARELGLQTLMGAPNVVRGGSHSGNVSARELAAHGLLD-ILSSD 254 (325)
T ss_pred cCCChHHHHHHHHC--CCeecc----CC-CCHHHHHHHHHCCCEEEecCcccccCccccccHhHHHHHHCCCeE-EEEcC
Confidence 74 56666655543 223344 12 22222110 023556666666 55433 345789999999999 99999
Q ss_pred CCCCCcCcccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEec
Q 020186 232 SAPHERGRKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTKI 298 (329)
Q Consensus 232 HaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~~ 298 (329)
|.|.+ .+...+.... ..+++++++++.|.|||+++|++ +| .|||++|+.
T Consensus 255 ~~p~s------------------ll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d~G~I~~G~~ADlvvvd~ 311 (325)
T cd01306 255 YVPAS------------------LLHAAFRLADLGGWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILVDD 311 (325)
T ss_pred CCcHh------------------HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEeC
Confidence 97642 2333333332 36899999999999999999994 34 699999953
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-08 Score=97.72 Aligned_cols=188 Identities=13% Similarity=0.130 Sum_probs=107.1
Q ss_pred HHHHHHHHhcCceeEEEEeeccccccCC-----CCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTNSQ-----DGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT 139 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~~~-----~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~ 139 (329)
..++.++.+.| +..+|+|+.+...... ..++ . +.+.++++.+++.|.++.+|++... .+..
T Consensus 123 ~~~v~~~~~~G-~~~iK~~~~g~~~~~~~~~~~~~~~-~-e~l~~~~~~A~~~g~~v~~H~~~~~-----------~i~~ 188 (342)
T cd01299 123 RAAVREQLRRG-ADQIKIMATGGVLSPGDPPPDTQFS-E-EELRAIVDEAHKAGLYVAAHAYGAE-----------AIRR 188 (342)
T ss_pred HHHHHHHHHhC-CCEEEEeccCCcCCCCCCCcccCcC-H-HHHHHHHHHHHHcCCEEEEEeCCHH-----------HHHH
Confidence 34677888888 4699999865321110 1233 3 7899999999999999999998531 2322
Q ss_pred HHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCC-------hh
Q 020186 140 ILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKR-------EI 210 (329)
Q Consensus 140 ~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~-------~~ 210 (329)
.+ ..|.. -|.|.. +.+.++.+++ ..++...||............ .-.|+-.. ..
T Consensus 189 ~l------~~G~~-~i~H~~~~~~~~~~~l~~---~g~~~~~t~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 251 (342)
T cd01299 189 AI------RAGVD-TIEHGFLIDDETIELMKE---KGIFLVPTLATYEALAAEGAA-------PGLPADSAEKVALVLEA 251 (342)
T ss_pred HH------HcCCC-EEeecCCCCHHHHHHHHH---CCcEEeCcHHHHHHHHhhccc-------cCCCHHHHHHHHHHHHH
Confidence 22 12443 366765 5666777664 456777887643211001000 00111000 01
Q ss_pred hHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC-C-
Q 020186 211 HRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP-R- 288 (329)
Q Consensus 211 dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~-~- 288 (329)
....+-+....|.- ++++||... . ..+|..-. .- +.......++..++++..+.|||+++|+. +
T Consensus 252 ~~~~~~~l~~~Gv~-v~~GTD~~~-~--------~~~~~~~~---~e-~~~~~~~~~~~~~al~~~T~~~a~~~g~~~~~ 317 (342)
T cd01299 252 GRDALRRAHKAGVK-IAFGTDAGF-P--------VPPHGWNA---RE-LELLVKAGGTPAEALRAATANAAELLGLSDEL 317 (342)
T ss_pred HHHHHHHHHHcCCe-EEEecCCCC-C--------CCchhHHH---HH-HHHHHHhCCCHHHHHHHHHHHHHHHhCccCCc
Confidence 12233345556754 489999642 0 01121111 00 11112336799999999999999999983 2
Q ss_pred C------cccEEEEe
Q 020186 289 N------TSKIKLTK 297 (329)
Q Consensus 289 ~------dADlvi~~ 297 (329)
| .|||+|++
T Consensus 318 G~i~~G~~ADlvvl~ 332 (342)
T cd01299 318 GVIEAGKLADLLVVD 332 (342)
T ss_pred ceECCCCcCCEEEEC
Confidence 3 69999994
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-10 Score=93.18 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=62.2
Q ss_pred cccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-------------C--h-hHHHHHHHHHHHHHHHHhcCCC
Q 020186 88 TTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-------------D--I-FDREKVFIDTILQPLIQRLPQL 151 (329)
Q Consensus 88 ~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-------------~--~-~~~E~~av~~~~~~~la~~~~~ 151 (329)
|++++.++... ..++++|++ ++++.++..||||+++.. + + -.+|...+.|.+ .||+.+||
T Consensus 55 fsddg~giq~~-~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g~~L~G~cEs~~~~rd~--lLak~~g~ 130 (142)
T PF12890_consen 55 FSDDGYGIQIQ-LLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLGVYLKGNCESVQCARDV--LLAKATGC 130 (142)
T ss_pred EecCCceeeeH-HHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhCCcCCCcchHHHHHHHH--HhhhccCC
Confidence 57788888887 899999999 899999999999997652 1 1 268999999998 99999999
Q ss_pred eEEEEecCCHHH
Q 020186 152 KVVMEHITTMDA 163 (329)
Q Consensus 152 ~lhi~HvSt~~s 163 (329)
..|||||||+++
T Consensus 131 ~yhVchvstkes 142 (142)
T PF12890_consen 131 HYHVCHVSTKES 142 (142)
T ss_pred cEEEEEEeccCC
Confidence 999999999864
|
|
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-09 Score=110.87 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=71.0
Q ss_pred hhcccCccEEEEC-----CCCCCCCC--cHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEE
Q 020186 9 ICSVSHYGRAIVM-----PNLKPPIT--TTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 9 ~Aa~GGvTtvidm-----Pnt~p~~~--~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K 81 (329)
.++++|+||++++ |||.|++. +++.++.+.+.++ ... +||++++. +...+++++.++.++|+ .+||
T Consensus 415 eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~p--vn~Gf~gk---G~~s~l~eL~elieaGa-~GfK 487 (837)
T PLN02303 415 EAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLP--LNFGFTGK---GNTAKPEGLHEIIKAGA-MGLK 487 (837)
T ss_pred HHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCC--CcEEEEcc---CcccCHHHHHHHHHcCc-EEEE
Confidence 4445555555554 67788774 5787877766433 334 89998864 32356889999998995 5999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCC
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVT 123 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~ 123 (329)
.+..+ .+++ ..+.+++++++++|.++++|||+-
T Consensus 488 ~h~d~-------gvTp--elL~raLe~AkelGVpVaIHAEdL 520 (837)
T PLN02303 488 LHEDW-------GTTP--AAIDNCLDVAEEYDIQVTIHTDTL 520 (837)
T ss_pred ECCCC-------CCCH--HHHHHHHHHHHHcCCEEEEecCcc
Confidence 87422 2333 789999999999999999999983
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-08 Score=99.72 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHH-HHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREK-VFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVA 176 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~-~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt 176 (329)
+.+.++++.+++.|.++.+|+..... .... .++.+.. ...-..+.+..|.|.+ +.+.++.+++ ..+.
T Consensus 295 e~l~~~~~~a~~~g~~v~~Ha~gd~~-----i~~~l~~~~~~~--~~~g~~~~r~~i~H~~~~~~~~~~~l~~---~gv~ 364 (479)
T cd01300 295 EELEELVRAADEAGLQVAIHAIGDRA-----VDTVLDALEAAL--KDNPRADHRHRIEHAQLVSPDDIPRFAK---LGVI 364 (479)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecHHH-----HHHHHHHHHHHH--HhcCCCCCCceeeecccCCHHHHHHHHH---cCCc
Confidence 88999999999999999999985421 0000 1111111 0111236788999988 4556665554 5688
Q ss_pred EEecchhhhcchhhhcCCCCC-CceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHH
Q 020186 177 ATVTPQHLVLNRNALFQGGLR-PHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVA 255 (329)
Q Consensus 177 ~Et~phhL~l~~~~~~~~~~~-~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~ 255 (329)
+++||+|+.+..+.......+ ...+..||+| +.+..|... +++|||.+.. .. ++ .+++..
T Consensus 365 ~~~~P~~~~~~~~~~~~~~lg~~~~~~~~p~~---------~~~~~Gv~v-~lGSD~~~~~-~~---p~-----~~~~~a 425 (479)
T cd01300 365 ASVQPNHLYSDGDAAEDRRLGEERAKRSYPFR---------SLLDAGVPV-ALGSDAPVAP-PD---PL-----LGIWAA 425 (479)
T ss_pred eEeCcccccCchHHHHHhcccHHHHhcCchHH---------HHHHCCCee-eccCCCCCCC-CC---HH-----HHHHHH
Confidence 999999988765443210012 2345566655 456778887 9999994332 11 10 111111
Q ss_pred HHHH-HH-----HHHhcCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEE
Q 020186 256 LSLY-AK-----VFEEMGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKL 295 (329)
Q Consensus 256 lpll-~~-----~~~~~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi 295 (329)
+... .. ...++++++++++..+.|||+.+|+. + | .|||+|
T Consensus 426 v~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 426 VTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred heeeCCCCCCCCCccccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 1000 00 01236799999999999999999983 2 3 699975
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-06 Score=81.12 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=32.4
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 256 LSLYAK-VFEEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 256 lpll~~-~~~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
++..+. .....++++++++.++.||||+||+++ | +|||++|+
T Consensus 281 l~~~~~~~~~~g~~~~ea~~~~t~npa~~~gl~~~g~i~~g~~ad~~~~~ 330 (365)
T TIGR03583 281 LATVMSKFLALGYSLEEVIEKVTKNAAEILKLTQKGRLQEGYDADLTIFT 330 (365)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcccEEEEe
Confidence 444443 233468999999999999999999963 4 69999984
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-06 Score=82.37 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=99.8
Q ss_pred eeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCe--EE
Q 020186 77 VFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLK--VV 154 (329)
Q Consensus 77 v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~--lh 154 (329)
+.+.|++.... ..+. +.+.++++.+++.|.++.+|+...... + .+.... ..|.. .|
T Consensus 178 ~~~~~~~~~~~-------~~~~-~~~~~~~~~A~~~g~~v~~H~~e~~~~-~-------~~~~~~------~~g~~~i~H 235 (371)
T cd01296 178 ADFCDVFCEKG-------AFSL-EQSRRILEAAKEAGLPVKIHADELSNI-G-------GAELAA------ELGALSADH 235 (371)
T ss_pred CCEEEEeecCC-------ccCH-HHHHHHHHHHHHCCCeEEEEEcCcCCC-C-------HHHHHH------HcCCCeeHH
Confidence 45778874321 1223 788999999999999999999754211 0 111111 12322 25
Q ss_pred EEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCC
Q 020186 155 MEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAP 234 (329)
Q Consensus 155 i~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaP 234 (329)
.+|+ +.+.++.+++ ..+.+.+||...+. +. .+ .||+ .+.+..|... +++|||.|
T Consensus 236 ~~~~-~~~~i~~la~---~g~~v~~~P~~~~~----l~---~~-----~~~~---------~~l~~~Gv~v-~lgsD~~p 289 (371)
T cd01296 236 LEHT-SDEGIAALAE---AGTVAVLLPGTAFS----LR---ET-----YPPA---------RKLIDAGVPV-ALGTDFNP 289 (371)
T ss_pred hcCC-CHHHHHHHHH---cCCeEEEChHHHHH----hC---CC-----CCCH---------HHHHHCCCcE-EEecCCCC
Confidence 5555 4666776665 46778889975432 11 11 4554 3567789987 99999966
Q ss_pred CCcCcccccCCcCCccchhHHHHHHHH-HH-HhcCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEEEe
Q 020186 235 HERGRKECACGCAGIYNAPVALSLYAK-VF-EEMGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKLTK 297 (329)
Q Consensus 235 h~~~eK~~~~~~~Gi~~~e~~lpll~~-~~-~~~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi~~ 297 (329)
+.. +. ..++..+. .. ..+++++++++..+.|||+++|+. + | +|||+|+|
T Consensus 290 ~~~----------~~----~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d 348 (371)
T cd01296 290 GSS----------PT----SSMPLVMHLACRLMRMTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILD 348 (371)
T ss_pred CCC----------hH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEEC
Confidence 531 10 11322222 22 247899999999999999999994 2 3 79999994
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=80.16 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe-cceeecCCccCc
Q 020186 266 MGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK-IPWKVPEAFSFS 309 (329)
Q Consensus 266 ~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~-~~~~v~~~~~~s 309 (329)
.++++++++++|.||||+||++ +| +|||+||| .+.+++.+++.+
T Consensus 426 eLSLeei~~mtT~nPAKiLGL~~kG~L~~G~~ADLvIfD~n~~~v~~~dl~s 477 (541)
T cd01304 426 EYSLYEIAIMTRAGPAKLLGLSDKGHLGVGADADIAIYDDDPDQVDPSDYEK 477 (541)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCccCCCCcCCEEEEeCCcCccCchhhcC
Confidence 4589999999999999999994 34 79999995 333676655544
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=83.71 Aligned_cols=243 Identities=13% Similarity=0.112 Sum_probs=127.0
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhC-CCCccEEEEEE-EEeCC---CC---------CHHHHHH
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKAL-PASSNFTPLMT-LYLTD---TT---------SPDEIKL 70 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~-~~~vd~~~~~~-~~~~~---~~---------~~~el~~ 70 (329)
+++.+++++||||+++|++|.|+....+.+..+.+..++.. . ..|++|.. .+++. +. ..+++.+
T Consensus 76 ~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~--~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~ 153 (374)
T cd00854 76 TIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGA--EILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKK 153 (374)
T ss_pred HHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCC--eeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHH
Confidence 45678999999999999999987776676776666554321 2 45666543 12211 11 2346677
Q ss_pred HHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEE-EecCCCCCCCChhHHHHHHHHHHHHHHHHhcC
Q 020186 71 ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLL-VHGEVTDPIVDIFDREKVFIDTILQPLIQRLP 149 (329)
Q Consensus 71 l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~-vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~ 149 (329)
+.+.+. -.+|+++- ... ... -.++++.+++.|+++. -|.-.. ...+. -|...
T Consensus 154 ~~~~~~-~~ik~~tl---aPE---~~~----~~~~i~~~~~~gi~v~~GH~~a~----------~~~~~------~a~~~ 206 (374)
T cd00854 154 WLEAAG-GLIKLVTL---APE---LDG----ALELIRYLVERGIIVSIGHSDAT----------YEQAV------AAFEA 206 (374)
T ss_pred HHHhcC-CCEEEEEE---CCC---CCC----hHHHHHHHHHCCeEEEeeCCcCC----------HHHHH------HHHHc
Confidence 766542 24677631 110 111 2467778888888884 676422 01121 12233
Q ss_pred CCeEEEEecCCHHHHHHHHcccC----------CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHH
Q 020186 150 QLKVVMEHITTMDAVKFVESCKE----------GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 150 ~~~lhi~HvSt~~sl~~i~~ak~----------~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
|.+. +.|.-..-+-. ..|+ ..++||...|-.. + +.++...+++..
T Consensus 207 G~~~-~tH~~n~m~~~---~~r~~~~~~a~l~~~~~~~~li~dg~H----------------v-----~~~~~~~~~r~~ 261 (374)
T cd00854 207 GATH-VTHLFNAMSPL---HHREPGVVGAALSDDDVYAELIADGIH----------------V-----HPAAVRLAYRAK 261 (374)
T ss_pred CCCe-eeECCCCCCCc---CCCCCcHHHHhhcCCCCeEEEEcCCCc----------------C-----CHHHHHHHHHhc
Confidence 5553 77764321100 0011 1234443332221 2 234555566654
Q ss_pred HcCCCCeEEecCCCCCC--------cCcc-----ccc--CCcCCccchhHHHHHHHH-HHH-hcCCHHHHHHHHhhhhhh
Q 020186 220 TSGSRKFFLGTDSAPHE--------RGRK-----ECA--CGCAGIYNAPVALSLYAK-VFE-EMGALDKLEAFTSFNGPD 282 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~--------~~eK-----~~~--~~~~Gi~~~e~~lpll~~-~~~-~~~~l~~~v~~~s~nPAk 282 (329)
--..+ ++.||.-... ...+ ... .....+.|-.+.|.-.+. .+. ..+++++++++.+.|||+
T Consensus 262 g~~~~--~lvtD~~~~~G~~~g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~ 339 (374)
T cd00854 262 GADKI--VLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAK 339 (374)
T ss_pred CCCcE--EEEeccccccCCCCCeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHH
Confidence 11222 5678842211 1111 000 010113332223332222 222 357999999999999999
Q ss_pred hcCCC--CC------cccEEEEecceeec
Q 020186 283 FYGLP--RN------TSKIKLTKIPWKVP 303 (329)
Q Consensus 283 ifgl~--~~------dADlvi~~~~~~v~ 303 (329)
++|++ .| .|||+++|..+++.
T Consensus 340 ~lg~~~~~G~i~~G~~ADlvv~d~~~~v~ 368 (374)
T cd00854 340 LLGLDDRKGSLKPGKDADLVVLDDDLNVK 368 (374)
T ss_pred HcCCCCCcCCcCCCCcCCEEEECCCCcEE
Confidence 99996 23 69999997655553
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-07 Score=87.22 Aligned_cols=111 Identities=10% Similarity=0.037 Sum_probs=67.9
Q ss_pred chhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCccc-ccC-CcCCccchhHHHHH
Q 020186 181 PQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE-CAC-GCAGIYNAPVALSL 258 (329)
Q Consensus 181 phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~-~~~-~~~Gi~~~e~~lpl 258 (329)
.|+.++ ++.+.. ....+..+++++ +++.+.| +....+.+. +..+++.+.....|. ... ...|..++....+-
T Consensus 193 ~~~~~~-~~~~~~--~~~~~~h~~~~~-~~~~~~l-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (333)
T PF01979_consen 193 DHLGLL-EEAIDD--GVDLIAHGTHLS-DEEIELL-KETGIGIIH-CPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAP 266 (333)
T ss_dssp HHHHSC-HHHHHH--HCEEEEEHTTSE-HHHHHHH-HHHTHEEEE-EHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHH
T ss_pred ccchhh-hhhccc--ccceeeccccCC-HHHhhhh-hccCCcccc-ccchhhhhccccccccccchhccccccccccccc
Confidence 666777 555442 145677888888 3355555 556667776 777776543333332 112 22355555444444
Q ss_pred HHHHHHh--------------------cCCHHHHHHHHhhhhhhhcCC-CC-C------cccEEEEe
Q 020186 259 YAKVFEE--------------------MGALDKLEAFTSFNGPDFYGL-PR-N------TSKIKLTK 297 (329)
Q Consensus 259 l~~~~~~--------------------~~~l~~~v~~~s~nPAkifgl-~~-~------dADlvi~~ 297 (329)
+...+.+ .++++++++++|.||||+||+ ++ | +|||||||
T Consensus 267 ~~~~~~~~g~~lgtDg~~~~l~~~~~~~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 267 LFRMLDKMGVNLGTDGVAEELKLFVRLGISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHHHHHCTTHEETTCTTCHHHHHHHHHHSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 4443332 189999999999999999999 33 4 79999985
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.4e-05 Score=67.56 Aligned_cols=141 Identities=17% Similarity=0.073 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC-CeEEEEecCCHHHHHHHHcccCCceEEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ-LKVVMEHITTMDAVKFVESCKEGFVAAT 178 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~-~~lhi~HvSt~~sl~~i~~ak~~~vt~E 178 (329)
..++..++.+++.|++|++|+.... ..+ + .+++..+ .+..|.|..+. ..+.++++.+.+++++
T Consensus 108 ~~~~~~~~~a~e~~~pv~iH~~~~~----------~~~---~--~l~~~~~~~~~~i~H~~~~-~~~~~~~~~~~g~~~~ 171 (251)
T cd01310 108 EVFRAQLELAKELNLPVVIHSRDAH----------EDV---L--EILKEYGPPKRGVFHCFSG-SAEEAKELLDLGFYIS 171 (251)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCch----------HHH---H--HHHHhcCCCCCEEEEccCC-CHHHHHHHHHcCCEEE
Confidence 6788899999999999999998541 112 3 3444454 44445576542 2223332211456666
Q ss_pred ecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHH
Q 020186 179 VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSL 258 (329)
Q Consensus 179 t~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpl 258 (329)
+++-.+. +.....+.+.+.+-.+.| +++||+ |.....+. .+..+.+. .++-
T Consensus 172 ~~~~~~~---------------------~~~~~~~~~~~~~~~dri--l~~TD~-p~~~~~~~--~~~~~~~~---~~~~ 222 (251)
T cd01310 172 ISGIVTF---------------------KNANELREVVKEIPLERL--LLETDS-PYLAPVPF--RGKRNEPA---YVKH 222 (251)
T ss_pred eeeeecc---------------------CCCHHHHHHHHhCChHHE--EEcccC-CCCCCCCC--CCCCCCCh---hHHH
Confidence 6543210 011122334444333344 789998 65433221 11123332 4554
Q ss_pred HHHHH-H-hcCCHHHHHHHHhhhhhhhcC
Q 020186 259 YAKVF-E-EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 259 l~~~~-~-~~~~l~~~v~~~s~nPAkifg 285 (329)
++..+ . ..++.+.+.+++..||+|+||
T Consensus 223 ~~~~la~~~gl~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 223 VAEKIAELKGISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhC
Confidence 55433 2 577999999999999999987
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00038 Score=67.23 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
+.+.++++.+++.|.++.+|+...... + .+.... .+ ... .--|..|+ +.+.++.+++ ..+...+
T Consensus 197 ~~~~~~~~~A~~~g~~v~~H~~e~~~~-~-------~~~~~~--~~-g~~-~~~H~~~~-~~~~l~~la~---~g~~~~~ 260 (377)
T TIGR01224 197 EQSRRILQAAQEAGLPVKLHAEELSNL-G-------GAELAA--KL-GAV-SADHLEHA-SDAGIKALAE---AGTVAVL 260 (377)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCC-C-------HHHHHH--Hc-CCC-ccHHHhcC-CHHHHHHHHh---cCCEEEE
Confidence 678999999999999999999642210 0 111111 11 111 11266666 5666776654 4678899
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCC-CCcCcccccCCcCCccchhHHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAP-HERGRKECACGCAGIYNAPVALSL 258 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaP-h~~~eK~~~~~~~Gi~~~e~~lpl 258 (329)
||..-+.- + ...||+ -+.+..|..- +++||+.| ... ... +..
T Consensus 261 ~P~~~~~l---------~---~~~~p~---------~~l~~~Gv~v-~lgTD~~~~~~~-----------~~~----~~~ 303 (377)
T TIGR01224 261 LPGTTFYL---------R---ETYPPA---------RQLIDYGVPV-ALATDLNPGSSP-----------TLS----MQL 303 (377)
T ss_pred CchHHHhc---------C---CcCccH---------HHHHHCCCCE-EEECCCCCCCCh-----------hHH----HHH
Confidence 99853210 1 122443 2334568776 99999865 210 011 111
Q ss_pred HHH--HHHhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 259 YAK--VFEEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 259 l~~--~~~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
.+. ....++++++++++.+.|||+.+|++. | .|||+++|
T Consensus 304 ~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d 352 (377)
T TIGR01224 304 IMSLACRLMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILS 352 (377)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEc
Confidence 111 123478999999999999999999842 3 69999994
|
This enzyme catalyzes the third step in histidine degradation. |
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00053 Score=67.59 Aligned_cols=177 Identities=18% Similarity=0.126 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHH-HHHHhcCCCeEEEEecC--CHHHHHHHHccc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQ-PLIQRLPQLKVVMEHIT--TMDAVKFVESCK 171 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~-~~la~~~~~~lhi~HvS--t~~sl~~i~~ak 171 (329)
+.|.++++.+++.|.++.+|+.... .|...+.+ -.. ..-....+.++.+.|.. +.+.++++++
T Consensus 189 ~~l~~~~~~A~~~g~~v~~H~~e~~-------~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~-- 259 (424)
T PRK08393 189 ALLKWVREKAREWNKLITIHLSETM-------DEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILAS-- 259 (424)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCH-------HHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHh--
Confidence 7899999999999999999985431 11111111 010 01112345555555554 6778888876
Q ss_pred CCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccc
Q 020186 172 EGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYN 251 (329)
Q Consensus 172 ~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~ 251 (329)
..+++..||.- +... +.+ .+|+ -+.+..|.- ..+|||-. ++. + ...-
T Consensus 260 -~g~~v~~~P~s-----n~~l--g~g-----~~~~---------~~~~~~Gv~-v~lGtD~~-~~~-------~--~~d~ 306 (424)
T PRK08393 260 -AGVTVAHNPAS-----NMKL--GSG-----VMPL---------RKLLNAGVN-VALGTDGA-ASN-------N--NLDM 306 (424)
T ss_pred -cCCEEEECHHH-----HHhh--ccC-----CCCH---------HHHHHCCCc-EEEecCCC-ccC-------C--chhH
Confidence 46788889942 1111 111 1333 223344644 48999952 110 0 1111
Q ss_pred h-hHHHHHHHHHHHh----cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEE--ecceeecCCccCcCCcccccCC
Q 020186 252 A-PVALSLYAKVFEE----MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFA 318 (329)
Q Consensus 252 ~-e~~lpll~~~~~~----~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~--~~~~~v~~~~~~s~~~~spf~~ 318 (329)
+ |..+..++....+ .+++++++++.+.|||+.+|++.| .|||+++ +..+.++..+..+...|+++ .
T Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~-~ 385 (424)
T PRK08393 307 LREMKLAALLHKVHNLDPTIADAETVFRMATQNGAKALGLKAGVIKEGYLADIAVIDFNRPHLRPINNPISHLVYSAN-G 385 (424)
T ss_pred HHHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHhCCCCCccCCCCccCEEEEeCCCCCcCCCCChHHHeeeeCC-C
Confidence 1 2222222221111 247899999999999999998533 7999999 45566666667777777776 5
Q ss_pred C
Q 020186 319 G 319 (329)
Q Consensus 319 G 319 (329)
+
T Consensus 386 ~ 386 (424)
T PRK08393 386 N 386 (424)
T ss_pred C
Confidence 4
|
|
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=76.65 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHH--HHhcCCHHHHHHHHhhhhhhhcCC-CC-C----
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKV--FEEMGALDKLEAFTSFNGPDFYGL-PR-N---- 289 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~--~~~~~~l~~~v~~~s~nPAkifgl-~~-~---- 289 (329)
.+..|... .++||+.|... + .. .+...+.. ....++.+++++..+.|||+.+|+ ++ |
T Consensus 304 l~~~Gi~v-~lgtD~~~~~~-----~-----~~----~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~ 368 (406)
T PRK09356 304 LRDAGVPV-ALATDFNPGSS-----P-----TE----SLLLAMNMACTLFRLTPEEALAAVTINAARALGRQDTHGSLEV 368 (406)
T ss_pred HHHCCCeE-EEeCCCCCCCC-----h-----hH----HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCC
Confidence 34668887 99999965210 1 11 12222221 224789999999999999999998 32 3
Q ss_pred --cccEEEEe
Q 020186 290 --TSKIKLTK 297 (329)
Q Consensus 290 --dADlvi~~ 297 (329)
.|||+|+|
T Consensus 369 G~~AD~vvld 378 (406)
T PRK09356 369 GKKADLVIWD 378 (406)
T ss_pred CCcCCEEEEC
Confidence 79999995
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00023 Score=70.71 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHH-------HHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV-------FIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~-------av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++.+++.|.++.+|+.... ...+.. .+.+. .-....+.++.+.|.. +.+.++.+++
T Consensus 214 e~l~~~~~~A~~~g~~v~~H~~e~~-----~~~~~~~~~~g~~~~~~l---~~~g~l~~~~~~~H~~~l~~~~~~~la~- 284 (451)
T PRK08203 214 ELMRESAALARRLGVRLHTHLAETL-----DEEAFCLERFGMRPVDYL---EDLGWLGPDVWLAHCVHLDDAEIARLAR- 284 (451)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCH-----HHHHHHHHHhCCCHHHHH---HHcCCCCCCeEEEEEeCCCHHHHHHHHh-
Confidence 7899999999999999999984321 111100 01111 1112234566555554 4566777665
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..+..-.||..- +. .+ .-.|| +.+.+..|.-= .++||..+.. ++..
T Consensus 285 --~g~~v~~~P~~~------~~---l~---~~~~~---------~~~~~~~Gv~v-~lGtD~~~~~----------~~~~ 330 (451)
T PRK08203 285 --TGTGVAHCPCSN------MR---LA---SGIAP---------VRELRAAGVPV-GLGVDGSASN----------DGSN 330 (451)
T ss_pred --cCCeEEECcHHh------hh---hc---cCCCC---------HHHHHHCCCeE-EEecCCCccC----------CCcC
Confidence 356667888521 11 11 01133 34455567664 9999964211 1111
Q ss_pred -chhHHHHHHHHHHH---hcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 251 -NAPVALSLYAKVFE---EMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 251 -~~e~~lpll~~~~~---~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
--|+.+++++.... ..+++.+++++++.||||.+|++. | .|||+|+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d 388 (451)
T PRK08203 331 LIGEARQALLLQRLRYGPDAMTAREALEWATLGGARVLGRDDIGSLAPGKLADLALFD 388 (451)
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCccCEEEEc
Confidence 12344444433221 257999999999999999999853 3 69999995
|
|
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=76.79 Aligned_cols=240 Identities=16% Similarity=0.082 Sum_probs=123.7
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEE---EEE-eCCCCC-H-HH-HHH--HHh-cCc
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLM---TLY-LTDTTS-P-DE-IKL--ARK-TGV 76 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~---~~~-~~~~~~-~-~e-l~~--l~~-~G~ 76 (329)
...+.+.|+||+.++. ....++.+.++.+++..++.... +++.++. ++- ..++.. . .. +.. +.+ .|.
T Consensus 136 ~~~~~a~GiTt~~d~~--~~~~~~~~~~~~~~~l~~~~~l~-~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~ 212 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG--GGFASDPEDLEALRELAAEGGLP-LRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA 212 (404)
T ss_dssp HHHHCHTCEEEETTCE--CCCGEHHHHHHHHHHHHHCTC---SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCeEEecCCc--cccCCCHHHHHHHHHHhhhcCCC-eeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence 5677899999999998 44455667777766655543211 5655553 221 123322 1 11 111 222 221
Q ss_pred eeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 020186 77 VFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVME 156 (329)
Q Consensus 77 v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~ 156 (329)
-.. ..+....+. +.+.+.++.+.+.|..+.+|+... .++..++. .+ +..+....+.
T Consensus 213 ~~~----------~~g~~~~~~-~~l~~~v~~a~~~g~~v~vHa~gd-----------~a~~~~l~-a~-~~~~~~~~i~ 268 (404)
T PF07969_consen 213 PVH----------ISGLPSFDP-EELEELVRAAREAGLQVAVHAIGD-----------RAIDEALD-AI-EAARARGRIE 268 (404)
T ss_dssp EEE----------ETC--SSSH-HHHHHHHHHHHHCT-EEEEEEESH-----------HHHHHHHH-HH-HHHTCCHEEE
T ss_pred ccc----------ccccccccc-hhHHHHHHHHHhcCCeeEEEEcCC-----------chHHhHHH-HH-Hhhcccceee
Confidence 101 112222333 568999999999999999999532 12322221 11 1111111455
Q ss_pred ecC--CHHHHHHHHcccCCceEEEecchhhhcchh-hhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCC
Q 020186 157 HIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRN-ALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSA 233 (329)
Q Consensus 157 HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~-~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHa 233 (329)
|.+ +++.++.+++ ..+..++.|||+..... .+.. ..+ +-| ......+...+..|..- +++||+.
T Consensus 269 h~~~~~~~~~~~~~~---l~~~~~~~p~~~~~~~~~~~~~-~~~-------~~~-~~~~~~~~~~~~~Gv~v-~~gsD~p 335 (404)
T PF07969_consen 269 HAELIDPDDIERMAE---LGVTASVQPHFLFSWGGEWYEE-RLG-------PER-ARRIYPIRSLLDAGVRV-ALGSDAP 335 (404)
T ss_dssp EHCBCCHHHHHHHHH---HTTEEEECCTHHHHETEETHHH-HHH-------HHC-GGGBTHHHHHHHCTTEE-EE--TTT
T ss_pred ccccCCHHHHHHHHH---hCCccccChhHhhhccchhhhh-hhh-------hHH-HHHHhHHHHHHhccCce-ecCcCCc
Confidence 544 6777766655 56899999988876541 1110 000 000 01113455667778665 8889973
Q ss_pred CCCcCcccccCCcCCccchhHHHHHH-HHHH-------HhcCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEE
Q 020186 234 PHERGRKECACGCAGIYNAPVALSLY-AKVF-------EEMGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKL 295 (329)
Q Consensus 234 Ph~~~eK~~~~~~~Gi~~~e~~lpll-~~~~-------~~~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi 295 (329)
.+. ..|+ .++.. ..... .... .+.+|+++.++.++.|||+.+|++ + | .|||||
T Consensus 336 -~~~---~~P~--~~~~~---~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 336 -VSP---PNPF--RGIWA---AVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp -TSS---CCHH--HHHHH---HHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred -ccc---cCcc--hhhhh---hhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence 210 0011 01111 11110 0111 157899999999999999999994 3 4 799987
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=73.31 Aligned_cols=195 Identities=18% Similarity=0.147 Sum_probs=119.4
Q ss_pred CCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHH-HHH-h---cCCCeEEEEecCC--HHHHH
Q 020186 93 DGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQP-LIQ-R---LPQLKVVMEHITT--MDAVK 165 (329)
Q Consensus 93 ~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~-~la-~---~~~~~lhi~HvSt--~~sl~ 165 (329)
..+.+. +.|.+.++.+.+.|.++.+||=-+. ++..++.. +-+ + .-+.+-.|.|++. ++-++
T Consensus 315 ~~l~~~-e~l~~~v~~a~~~gl~v~vHAiGD~-----------Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~ 382 (535)
T COG1574 315 ELLLTE-EELEELVRAADERGLPVAVHAIGDG-----------AVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIE 382 (535)
T ss_pred CcccCH-HHHHHHHHHHHHCCCcEEEEEechH-----------HHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHH
Confidence 344455 8999999999999999999996431 22222210 111 1 2368888999884 44443
Q ss_pred HHHcccCCceEEEecchhhhcchhhhcCCCCC-CceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccC
Q 020186 166 FVESCKEGFVAATVTPQHLVLNRNALFQGGLR-PHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECAC 244 (329)
Q Consensus 166 ~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~-~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~ 244 (329)
-+ +++.+.+.+-|+|++...+.+.. .+| .+.+-++|+|+ .++.|.+= .-+||- |-+..+ |+
T Consensus 383 R~---~~Lgv~~svQP~f~~~~~~~~~~-rlG~~r~~~~~p~~~---------ll~~G~~l-a~gSD~-Pv~~~d---P~ 444 (535)
T COG1574 383 RF---AKLGVIASVQPNFLFSDGEWYVD-RLGEERASRSYPFRS---------LLKAGVPL-AGGSDA-PVEPYD---PW 444 (535)
T ss_pred HH---HhcCceEeeccccccccchHHHH-hhhhhhhhccCcHHH---------HHHCCCeE-eccCCC-CCCCCC---hH
Confidence 33 33789999999999866433332 122 24555666543 45668875 888995 432111 11
Q ss_pred CcCCccchhHHHHHH-HH--H--HHhcCCHHHHHHHHhhhhhhhcCCC--CC------cccEEEEe-cceeecCCccC-c
Q 020186 245 GCAGIYNAPVALSLY-AK--V--FEEMGALDKLEAFTSFNGPDFYGLP--RN------TSKIKLTK-IPWKVPEAFSF-S 309 (329)
Q Consensus 245 ~~~Gi~~~e~~lpll-~~--~--~~~~~~l~~~v~~~s~nPAkifgl~--~~------dADlvi~~-~~~~v~~~~~~-s 309 (329)
-||.. .+--- .. . ...++++++.+++.+.|+|...|.. +| .|||+|+| ..|+++++.+. -
T Consensus 445 --~~i~~---AVtr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~f~~~~~~i~~~ 519 (535)
T COG1574 445 --LGIYA---AVTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDPFTVDPDSIKDT 519 (535)
T ss_pred --HHHHH---HHcCCCCCCCCCccccccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecCCcccCChHHhccc
Confidence 01111 00000 00 0 0116899999999999999998872 23 69999995 58999866653 3
Q ss_pred CCcccccCCCcEEE
Q 020186 310 FGDIIPMFAGNTLE 323 (329)
Q Consensus 310 ~~~~spf~~G~~l~ 323 (329)
+..-|.+ +|+.+.
T Consensus 520 ~v~~T~~-~Gk~VY 532 (535)
T COG1574 520 KVVLTIV-AGKVVY 532 (535)
T ss_pred eEEEEEE-cCeEee
Confidence 5566777 776543
|
|
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-05 Score=74.39 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=37.6
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEE
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMT 56 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~ 56 (329)
++..+++++|||++++++.|.|+.+..+.++.+.+..++. ..+.++++|.-
T Consensus 81 ~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~-~~a~~lG~HlE 131 (380)
T TIGR00221 81 IMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKE-KNAQALGLHLE 131 (380)
T ss_pred HHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhcc-CCceeeeEeee
Confidence 5678899999999999999998877777777665543221 11268998874
|
|
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00089 Score=66.03 Aligned_cols=245 Identities=16% Similarity=0.119 Sum_probs=120.8
Q ss_pred cchhcccCccEEEECCCC-CCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEe----CCCCCHHHHHHHHhcCceeEEE
Q 020186 7 LPICSVSHYGRAIVMPNL-KPPITTTAAAVAYRESILKALPASSNFTPLMTLYL----TDTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt-~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~----~~~~~~~el~~l~~~G~v~~~K 81 (329)
+..++..|+|+|-+|-+. .|.. ..++...+ +.+.-...+|+.... +.. ......+.+++..+.|+-
T Consensus 104 ~~e~l~~G~Ttvrd~~d~~~~~~---~~~~a~~~-~~~~~~~~~~~~~~a-~~~~g~~~~~~~~~~~~~~l~~g~d---- 174 (426)
T PRK07572 104 CDWAVARGLLAIRSHVDVCDPRL---LAVEALLE-VRERVAPYLDLQLVA-FPQDGVLRSPGAVDNLERALDMGVD---- 174 (426)
T ss_pred HHHHHHcCcccEeeccccCCCcc---cHHHHHHH-HHHHhhccceEEEEe-ccChhhccCccHHHHHHHHHHcCCC----
Confidence 445688999999998643 2322 22332222 221110014544322 111 011223445666666731
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEec-CCCCCCCChhHHHHHHHHHHHHHHHHhcCC--CeEEEEec
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHG-EVTDPIVDIFDREKVFIDTILQPLIQRLPQ--LKVVMEHI 158 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHa-Ed~~~~~~~~~~E~~av~~~~~~~la~~~~--~~lhi~Hv 158 (329)
++ ++.... ....++..+.+..+++.+++.|.++.+|+ |..+.. ...+.+.. ......| .++.+.|.
T Consensus 175 ~i-Gg~p~~-~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~-------~~~~~~~~--~~~~~~G~~~~v~~~H~ 243 (426)
T PRK07572 175 VV-GGIPHF-ERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPL-------SRHIETLA--AETQRLGLQGRVAGSHL 243 (426)
T ss_pred EE-eCCCCC-ccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChh-------HHHHHHHH--HHHHHhCCCCCEEEEcc
Confidence 11 111111 11111211678999999999999999999 533211 11122222 1222223 27778887
Q ss_pred CC---------HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEe
Q 020186 159 TT---------MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLG 229 (329)
Q Consensus 159 St---------~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~ 229 (329)
.. .+.+++++++ .+..=.||..-+. .. + .....|+-+.-. .+.+.+..|.- +.+|
T Consensus 244 ~~l~~~~~~~~~~~~~~la~~---g~~vv~~P~~n~~-----l~---~-~~~~~~~~~g~~---~v~~l~~~GV~-v~lG 307 (426)
T PRK07572 244 TSMHSMDNYYVSKLIPLMAEA---GVNAIANPLINIT-----LQ---G-RHDTYPKRRGMT---RVPELMAAGIN-VAFG 307 (426)
T ss_pred chhhcCCHHHHHHHHHHHHHc---CCeEEECchhhhh-----hc---C-CCCCCCCCCCCc---CHHHHHHCCCc-EEEe
Confidence 54 3457777654 4566677843211 00 0 001122222222 24455556754 4999
Q ss_pred cCCCCCCcCcccccCCcCCccc-hhHHHHHHHHHHHhcC----CHHHHHHHHhhhhhhhcCCCC------CcccEEEEe
Q 020186 230 TDSAPHERGRKECACGCAGIYN-APVALSLYAKVFEEMG----ALDKLEAFTSFNGPDFYGLPR------NTSKIKLTK 297 (329)
Q Consensus 230 SDHaPh~~~eK~~~~~~~Gi~~-~e~~lpll~~~~~~~~----~l~~~v~~~s~nPAkifgl~~------~dADlvi~~ 297 (329)
||+..- +|...|... +|.+.-.+ ...++ .+.++++..+.||||++|++. +.|||++++
T Consensus 308 tD~~~~-------~~~~~~~~~~~e~~~~~~---~~~~~~~~~~l~~~l~~aT~~~A~~lgl~~~gi~~G~~ADlvl~d 376 (426)
T PRK07572 308 HDCVMD-------PWYSLGSGDMLEVAHMGL---HVAQMTGQDAMRACFDAVTVNPARIMGLEGYGLEPGCNADLVLLQ 376 (426)
T ss_pred cCCCCC-------CCCCCCCCCHHHHHHHHH---HHHcCCCHHHHHHHHHHhhcchHHhhCCCCcCCCCCCcCCEEEEe
Confidence 998411 121123222 22222111 11122 356788899999999999842 279999995
|
|
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=66.83 Aligned_cols=179 Identities=20% Similarity=0.256 Sum_probs=101.9
Q ss_pred HHHHHHHH-hcCceeEEEEeeccccccCCCCccChHHHHH-HHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHH
Q 020186 65 PDEIKLAR-KTGVVFAVKLYPAGATTNSQDGVTDLFGKCV-HVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQ 142 (329)
Q Consensus 65 ~~el~~l~-~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~-~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~ 142 (329)
.+++.... +.| +.|+|+++... +....+ ..+. ++++.++++|.+|.+|+..... ............+.
T Consensus 87 ~~~l~~~~~~~g-~~Gv~l~~~~~----~~~~~~--~~~~~~~~~~~~~~~~pv~~H~g~~~~--~~~~~~~~~~~~~~- 156 (273)
T PF04909_consen 87 VEELERALQELG-FRGVKLHPDLG----GFDPDD--PRLDDPIFEAAEELGLPVLIHTGMTGF--PDAPSDPADPEELE- 156 (273)
T ss_dssp HHHHHHHHHTTT-ESEEEEESSET----TCCTTS--GHCHHHHHHHHHHHT-EEEEEESHTHH--HHHHHHHHHHHHHT-
T ss_pred HHHHHHhccccc-eeeeEecCCCC----cccccc--HHHHHHHHHHHHhhccceeeeccccch--hhhhHHHHHHHHHH-
Confidence 45677666 556 57999997431 222334 3444 8999999999999999761100 00011111121111
Q ss_pred HHHHhcCCCeEEEEecCCH-----HHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTM-----DAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVS 217 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~-----~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~ 217 (329)
..+.++.++++.+.|.... +.++++++. .+++++++-.+-. ....++......-..+.+
T Consensus 157 ~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~--~nvy~d~s~~~~~--------------~~~~~~~~~~~~l~~~~~ 220 (273)
T PF04909_consen 157 ELLERFPDLRIILAHLGGPFPWWEEALRLLDRF--PNVYVDLSGIPPF--------------WYFWPPSFDRPFLRRAVD 220 (273)
T ss_dssp THHHHSTTSEEEESGGGTTHHHHHHHHHHHHHH--TTEEEECHSHHSS--------------EEEETTHHCHHHHHHHHH
T ss_pred HHHHHhcCCeEEEecCcccchhHHHHHHHHHhC--Ccccccccccccc--------------cccCcccccHHHHHHHHH
Confidence 1457888999999999998 556665544 5788888652211 222233333333344444
Q ss_pred HHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHH-HHHhcCCHHHHHHHHhhhhhhhcCC
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK-VFEEMGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-~~~~~~~l~~~v~~~s~nPAkifgl 286 (329)
..-.+.| +.|||. |+..... + ....+. .....++-+..-++++.|++|+|||
T Consensus 221 ~~g~dri--lfGSD~-P~~~~~~-------~-------~~~~~~~~~~~~l~~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 221 EFGPDRI--LFGSDY-PHPDGAS-------P-------YEYIWEAYFLDDLSEEEREKILYDNARRLYGL 273 (273)
T ss_dssp HHTGGGE--EEE--T-TSSTHHH-------H-------HHHHHHHHHHHHSSHHHHHHHHTHHHHHHHTC
T ss_pred HhCCceE--EecCCC-CCCCccc-------c-------HHHHHHhhhccCCCHHHHHHHHhHhHHHHcCc
Confidence 4434565 889995 6643211 1 111111 1111268889999999999999996
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0012 Score=64.81 Aligned_cols=233 Identities=14% Similarity=0.079 Sum_probs=117.9
Q ss_pred hhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCC---CHHHHHHHHh----cCceeEEE
Q 020186 9 ICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTT---SPDEIKLARK----TGVVFAVK 81 (329)
Q Consensus 9 ~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~---~~~el~~l~~----~G~v~~~K 81 (329)
..+.+|+||++||.+..+ ....+.+ +.+.+.... +.+++... ...... ..++...+.+ .+. ..+|
T Consensus 111 e~l~~GvTTv~d~~~~~~-~~~~~~~----~a~~~~Gir-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~~i~ 182 (419)
T PRK06687 111 EMLQSGTTTFNDMYNPNG-VDIQQIY----QVVKTSKMR-CYFSPTLF-SSETETTAETISRTRSIIDEILKYKN-PNFK 182 (419)
T ss_pred HHHhcCcceeehhhcccc-ccHHHHH----HHHHHhCCc-eEeccccc-cCCcccHHHHHHHHHHHHHHHhccCC-CceE
Confidence 348899999999974332 2222222 222222211 34433210 001111 1233334432 221 2367
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHH-HH----HHHHHHH--hcCCCeEE
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFI-DT----ILQPLIQ--RLPQLKVV 154 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av-~~----~~~~~la--~~~~~~lh 154 (329)
+.++... ...+++ +.+.++++.+++.|.++.+|+.... .|...+ .+ .+. .+. ...+-++.
T Consensus 183 ~~~~~~~---~~~~s~--e~l~~~~~~A~~~g~~i~~H~~e~~-------~e~~~~~~~~g~~~~~-~l~~~g~l~~~~~ 249 (419)
T PRK06687 183 VMVAPHS---PYSCSR--DLLEASLEMAKELNIPLHVHVAETK-------EESGIILKRYGKRPLA-FLEELGYLDHPSV 249 (419)
T ss_pred EEEeCCC---CCCCCH--HHHHHHHHHHHHcCCcEEEEeCCCH-------HHHHHHHHHHCcCHHH-HHHHcCCCCCCeE
Confidence 7665421 123344 7899999999999999999986442 111111 00 010 111 22344455
Q ss_pred EEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCC
Q 020186 155 MEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDS 232 (329)
Q Consensus 155 i~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDH 232 (329)
+.|.. +.+.++++++. .+.+-.||.. +... +.| .||+ .+.+..|.- ..+|||-
T Consensus 250 ~~H~~~~~~~~~~~la~~---g~~v~~~P~s-----n~~l--~~g-----~~p~---------~~~~~~Gv~-v~lGtD~ 304 (419)
T PRK06687 250 FAHGVELNEREIERLASS---QVAIAHNPIS-----NLKL--ASG-----IAPI---------IQLQKAGVA-VGIATDS 304 (419)
T ss_pred EEEEecCCHHHHHHHHHc---CCeEEECcHH-----hhhh--ccC-----CCcH---------HHHHHCCCe-EEEeCCC
Confidence 55544 56677777653 4455568852 1111 111 2443 233444654 4899996
Q ss_pred CCCCcCcccccCCcCCccchh-HHHHHHHHHHH-h---cCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 233 APHERGRKECACGCAGIYNAP-VALSLYAKVFE-E---MGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 233 aPh~~~eK~~~~~~~Gi~~~e-~~lpll~~~~~-~---~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
.+- + +....++ ..+..++.... + .++.++++++.+.||||.+|++. | .|||+++|
T Consensus 305 ~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d 372 (419)
T PRK06687 305 VAS--------N--NNLDMFEEGRTAALLQKMKSGDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQ 372 (419)
T ss_pred CCC--------C--CChhHHHHHHHHHHHhccccCCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEEC
Confidence 321 0 0111121 12222222111 1 36899999999999999999842 3 69999995
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0042 Score=60.61 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhHc-CCcEEEecCCCCCCCChhHHHHHHHHHH-------HHH-HHHhcCCCeEEEEecC--CHHHHHHHH
Q 020186 100 GKCVHVLEEMVEQ-NMPLLVHGEVTDPIVDIFDREKVFIDTI-------LQP-LIQRLPQLKVVMEHIT--TMDAVKFVE 168 (329)
Q Consensus 100 ~~l~~~l~~~~~~-~~~v~vHaEd~~~~~~~~~~E~~av~~~-------~~~-~la~~~~~~lhi~HvS--t~~sl~~i~ 168 (329)
+.|.++++.+++. |.++.+|+..... |...+.+. +.. .-....|.++.+.|.. +.+.+++++
T Consensus 186 e~l~~~~~~A~~~~g~~v~~H~~e~~~-------~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~ 258 (401)
T TIGR02967 186 EQLAAAGELAKEYPDVYVQTHLSENKD-------EIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLA 258 (401)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCch-------HHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHH
Confidence 7899999999998 9999999853311 11111110 100 1112235577677766 456677776
Q ss_pred cccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCC
Q 020186 169 SCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAG 248 (329)
Q Consensus 169 ~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~G 248 (329)
+ ..+.+-.||..-+ .. +. -.||+ .+.+..|.-- .++||..... .
T Consensus 259 ~---~g~~v~~~P~~~~-----~~--~~-----g~~~~---------~~~~~~Gv~v-~lGtD~~~~~-----------~ 302 (401)
T TIGR02967 259 E---TGAAIAHCPTSNL-----FL--GS-----GLFNL---------KKALEHGVRV-GLGTDVGGGT-----------S 302 (401)
T ss_pred H---cCCeEEEChHHHH-----Hh--cc-----CCCCH---------HHHHHCCCeE-EEecCCCCCC-----------C
Confidence 5 3567778885311 11 11 13443 2334557544 8999963210 1
Q ss_pred ccchhH-HHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 249 IYNAPV-ALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 249 i~~~e~-~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
..-++. .+-+.+.... ..++.++++++.+.|||+.+|++. | .|||+|+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~i~~G~~ADlvi~d 361 (401)
T TIGR02967 303 FSMLQTLREAYKVSQLQGARLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLD 361 (401)
T ss_pred cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhCCcCCccccCCCCccCEEEEc
Confidence 111111 1111111112 247899999999999999999852 3 69999994
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=66.05 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 265 EMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 265 ~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
+.+++++++++++.||||+||+++ | +|||+|||
T Consensus 428 Re~sL~EI~~mtTanPAkaLGL~dkG~L~pGa~ADIaI~D 467 (556)
T TIGR03121 428 REYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYD 467 (556)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEe
Confidence 456899999999999999999953 4 79999994
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=66.80 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=79.1
Q ss_pred CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcC
Q 020186 114 MPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193 (329)
Q Consensus 114 ~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~ 193 (329)
.++.+||... ..+.+++ .+++..|.++.|.|.... .+.+.+.++.++.+-++|.+-......
T Consensus 193 ~~v~vHa~~~-----------~~i~~~l--~~~~e~g~~~~i~H~~~~--~~~~~~la~~gv~v~~~P~~~~~~~~~--- 254 (359)
T cd01309 193 IPVRIHAHRA-----------DDILTAI--RIAKEFGIKITIEHGAEG--YKLADELAKHGIPVIYGPTLTLPKKVE--- 254 (359)
T ss_pred eeEEEEeCCH-----------HHHHHHH--HHHHHcCCCEEEECchhH--HHHHHHHHHcCCCEEECccccccccHH---
Confidence 7888898743 2355555 567778888888998743 333333333456666777642211100
Q ss_pred CCCCCceEEcCCCCChhhHHHHHHHHHcC-CCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHH-HHHhcCCHHH
Q 020186 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSG-SRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK-VFEEMGALDK 271 (329)
Q Consensus 194 ~~~~~~~k~~PPLR~~~dr~aLw~al~~G-~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-~~~~~~~l~~ 271 (329)
+.+. ....+-+.+..| ..- .++|||.++. .. .++..+. .....++.++
T Consensus 255 -----------~~~~--~~~~~~~l~~aGGv~v-algsD~~~~~------------~~----~l~~~~~~a~~~gl~~~~ 304 (359)
T cd01309 255 -----------EVND--AIDTNAYLLKKGGVAF-AISSDHPVLN------------IR----NLNLEAAKAVKYGLSYEE 304 (359)
T ss_pred -----------Hhhc--chhhHHHHHHcCCceE-EEECCCCCcc------------ch----hHHHHHHHHHHcCCCHHH
Confidence 0000 001122334456 664 9999993221 00 1222122 2234689999
Q ss_pred HHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 272 LEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 272 ~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
+++.++.|||+++|+.. | +|||+||+
T Consensus 305 al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d 338 (359)
T cd01309 305 ALKAITINPAKILGIEDRVGSLEPGKDADLVVWN 338 (359)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCCCCccCEEEEC
Confidence 99999999999999942 3 79999994
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00034 Score=68.08 Aligned_cols=48 Identities=10% Similarity=-0.092 Sum_probs=34.6
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEE
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMT 56 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~ 56 (329)
..+++.+|||++++++.|.|+....+.++.+.+..++.+. +++++|.-
T Consensus 84 ~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a--~~~G~HlE 131 (382)
T PRK11170 84 QKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPN--QALGLHLE 131 (382)
T ss_pred HHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCC--eEEEEEee
Confidence 4457899999999999888876666666666554433222 78999874
|
|
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0029 Score=58.64 Aligned_cols=229 Identities=14% Similarity=0.071 Sum_probs=116.0
Q ss_pred hcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCC-ccEEEEEEEEeCC-----CCCHHHHHHHHh--cCceeEEE
Q 020186 10 CSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPAS-SNFTPLMTLYLTD-----TTSPDEIKLARK--TGVVFAVK 81 (329)
Q Consensus 10 Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~-vd~~~~~~~~~~~-----~~~~~el~~l~~--~G~v~~~K 81 (329)
++.-||||++|--.+. ..+...+....-...+..-.+ +++++-+-+..++ +-..+++.++.+ .-.+.|.|
T Consensus 81 ga~~GvTTvVDAGSaG--aanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~d~ivGlK 158 (386)
T COG3964 81 GAPNGVTTVVDAGSAG--AANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHRDVIVGLK 158 (386)
T ss_pred cccCCceEEEecCCcC--ccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCcCcEEEEE
Confidence 4678999999986333 234443333222111110011 3544433211111 112344555544 24577999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT-- 159 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS-- 159 (329)
+-+.... .+..++.- +..+++.++.+++|+|+|-.++... ..|....- +.-=.|.|.=
T Consensus 159 vR~s~~~-~g~~GitP----l~la~~ia~~~klPlmvHigePp~~----~dEvlerL-----------~~GDIitHcfng 218 (386)
T COG3964 159 VRVSTED-IGEYGITP----LTLALRIANDLKLPLMVHIGEPPVL----MDEVLERL-----------RRGDIITHCFNG 218 (386)
T ss_pred EEeeecc-ccccCCch----HHHHHHHHhhcCCceEEecCCCCcc----HHHHHHhc-----------cCCceeeeeccC
Confidence 9874321 12234433 6677888889999999999886421 12221111 1111233432
Q ss_pred --------CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC-CCeEEec
Q 020186 160 --------TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS-RKFFLGT 230 (329)
Q Consensus 160 --------t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~-Id~~i~S 230 (329)
...-...+++|++.-|-.++.- + +..+-++ --| .++.+|. -| +|+|
T Consensus 219 kpn~~l~~dg~vr~~vrra~erGV~fD~gh-------------G-~asfsf~------vAr----~aia~GllP~-~ISS 273 (386)
T COG3964 219 KPNTILTDDGVVRAEVRRARERGVIFDAGH-------------G-RASFSFN------VAR----RAIANGLLPD-IISS 273 (386)
T ss_pred CCCCccccchhHHHHHHHHHhcceEEEccC-------------C-cceeeHH------HHH----HHHhcCCCcc-eeec
Confidence 2233344555544222222210 1 1122221 122 3455565 46 9999
Q ss_pred CCCCCCcCcccccCCcCCccchhHHHHHHH-HHHHhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEE
Q 020186 231 DSAPHERGRKECACGCAGIYNAPVALSLYA-KVFEEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLT 296 (329)
Q Consensus 231 DHaPh~~~eK~~~~~~~Gi~~~e~~lpll~-~~~~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~ 296 (329)
|=-.|+ |- .+--+-++... ..+.-..+|+++++..+.|||..+|++. | +||++||
T Consensus 274 Dlh~~~---~~--------n~Pv~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~~~gtLa~G~~aD~tvf 336 (386)
T COG3964 274 DLHTIT---KL--------NGPVYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLAEIGTLAPGAFADITVF 336 (386)
T ss_pred cceeee---ec--------CchHHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCccccCccCCCcccceEEE
Confidence 955554 11 11001222222 2333467999999999999999999964 3 7999999
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=64.11 Aligned_cols=233 Identities=14% Similarity=0.121 Sum_probs=112.7
Q ss_pred cchhcccCccEEEECCCCCCC--CCcHHHHHHHHHHHHhhCCCCccEEEEEEEE----eCCCCCHHHHHHHHhcCceeEE
Q 020186 7 LPICSVSHYGRAIVMPNLKPP--ITTTAAAVAYRESILKALPASSNFTPLMTLY----LTDTTSPDEIKLARKTGVVFAV 80 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~--~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~----~~~~~~~~el~~l~~~G~v~~~ 80 (329)
+..+...|+|+|-+|-+..|. ....+.+.+..+..+ .. +++.+.. +. .......+-+++..+.|+ .+
T Consensus 104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~v~-~~~~g~~~~~~~~~ll~~~l~~g~--~~ 176 (391)
T PRK05985 104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLR--GL--IDIQIVA-FPQSGVLSRPGTAELLDAALRAGA--DV 176 (391)
T ss_pred HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhh--Cc--ccEEEEe-ccCccccCCcCHHHHHHHHHHcCC--CE
Confidence 556788999999888654443 222332222222221 11 4443321 10 011111234666666663 11
Q ss_pred EEeeccccccCC-CCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC--eEEEEe
Q 020186 81 KLYPAGATTNSQ-DGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL--KVVMEH 157 (329)
Q Consensus 81 K~f~~~~~~~~~-~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~--~lhi~H 157 (329)
.- .+.... ....+ +.|.++++.+++.|.++.+|...... .. ...+.+.+ ..+...|. ++++.|
T Consensus 177 --~g--g~~p~~~~~~~~--~~l~~~~~~A~~~g~~i~~Hv~e~~d---~~---~~~~~~~~--e~~~~~g~~~~~~i~H 242 (391)
T PRK05985 177 --VG--GLDPAGIDGDPE--GQLDIVFGLAERHGVGIDIHLHEPGE---LG---AFQLERIA--ARTRALGMQGRVAVSH 242 (391)
T ss_pred --Ee--CCCCCCcCCCHH--HHHHHHHHHHHHhCCCcEEeeCCCCC---cc---HHHHHHHH--HHHHHhCCCCCEehhh
Confidence 10 111111 11223 68899999999999999999753211 01 11222233 23333443 588999
Q ss_pred cCCH---------HHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEE
Q 020186 158 ITTM---------DAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFL 228 (329)
Q Consensus 158 vSt~---------~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i 228 (329)
..+- +.++++++++ ..|. +|+. . ..+ . +| +-+.+..|.-= .+
T Consensus 243 ~~~l~~~~~~~~~~~i~~lae~g-~~v~--~~~~----------~-~~~-~----~~---------~~~l~~~Gv~v-~l 293 (391)
T PRK05985 243 AFCLGDLPEREVDRLAERLAEAG-VAIM--TNAP----------G-SVP-V----PP---------VAALRAAGVTV-FG 293 (391)
T ss_pred hhhhhcCCHHHHHHHHHHHHHcC-CeEE--EeCC----------C-CCC-C----CC---------HHHHHHCCCeE-EE
Confidence 8642 3345555432 3332 2210 0 001 0 22 33344556653 89
Q ss_pred ecCCCC--CCcCcccccCCcCCccchhHHHHHHH-HHHHhcCCHHHHHHHHhhhhhhhcCCCC------CcccEEEEe
Q 020186 229 GTDSAP--HERGRKECACGCAGIYNAPVALSLYA-KVFEEMGALDKLEAFTSFNGPDFYGLPR------NTSKIKLTK 297 (329)
Q Consensus 229 ~SDHaP--h~~~eK~~~~~~~Gi~~~e~~lpll~-~~~~~~~~l~~~v~~~s~nPAkifgl~~------~dADlvi~~ 297 (329)
|||+.. ++ |++ +..-++...-+.. ..+...-+++++.+..+.|||+.+|++. +.|||++++
T Consensus 294 GtD~~~~~~~------p~~--~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~l~~G~~ADlvvld 363 (391)
T PRK05985 294 GNDGIRDTWW------PYG--NGDMLERAMLIGYRSGFRTDDELAAALDCVTHGGARALGLEDYGLAVGARADFVLVD 363 (391)
T ss_pred ecCCCCCCCc------CCC--CCcHHHHHHHHHHHHccCChHHHHHHHHHHcchhHHHhCCcccCCCCCCcCCEEEEC
Confidence 999742 11 111 1111221111111 1111112467899999999999999842 279999994
|
|
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0054 Score=60.58 Aligned_cols=168 Identities=12% Similarity=0.038 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCH---------HHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTM---------DAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~---------~sl~~i~~a 170 (329)
+.+.++++.+++.|.++.+|+...... ..... ..+.+.+ ...-.+.++.+.|...- +.++++++
T Consensus 195 e~l~~~~~~A~~~g~~~~~H~~E~~~~-~~~~~--~~~~~~~---~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~- 267 (426)
T PRK09230 195 ESLHKAFALAQKYDRLIDVHCDEIDDE-QSRFV--ETVAALA---HREGMGARVTASHTTAMHSYNGAYTSRLFRLLKM- 267 (426)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCCc-chHHH--HHHHHHH---HHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHH-
Confidence 678999999999999999998643211 00001 1121221 11224557777777654 34555544
Q ss_pred cCCceEEEecchh-hhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCc
Q 020186 171 KEGFVAATVTPQH-LVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249 (329)
Q Consensus 171 k~~~vt~Et~phh-L~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi 249 (329)
..+.+.+||.. +.|.. . ..--|.-|.-.. +.+.++.|.= ..|+||+.. .+|.+.|.
T Consensus 268 --~gv~vv~cP~sn~~l~~-~---------~~~~p~~~g~~p---i~~l~~aGv~-V~lGTD~~~-------d~~~~~~~ 324 (426)
T PRK09230 268 --SGINFVANPLVNIHLQG-R---------FDTYPKRRGITR---VKEMLEAGIN-VCFGHDDVF-------DPWYPLGT 324 (426)
T ss_pred --cCCeEEECcchhhhhcC-C---------CCCCCCCCCCcC---HHHHHHCCCe-EEEecCCCC-------CCCcCCCC
Confidence 46888999964 22221 1 001121122112 2344445743 489999731 12323344
Q ss_pred cchhHHHHHHHHHHHh-cC-CHHHHHHHHhhhhhhhcCCCC------CcccEEEEe
Q 020186 250 YNAPVALSLYAKVFEE-MG-ALDKLEAFTSFNGPDFYGLPR------NTSKIKLTK 297 (329)
Q Consensus 250 ~~~e~~lpll~~~~~~-~~-~l~~~v~~~s~nPAkifgl~~------~dADlvi~~ 297 (329)
..+-..+-+.+..... .. +++++.++.+.||||.+|++. +.|||++++
T Consensus 325 ~d~~~~~~~~~~~~~~~~~~~~~~~l~maT~~gA~alg~~~~gle~G~~ADlv~~~ 380 (426)
T PRK09230 325 ANMLQVLHMGLHVCQLMGYGQINDGLNLITTHSARTLNLQDYGIEVGNPANLIILP 380 (426)
T ss_pred CCHHHHHHHHHHHHhhCChhhHHHHHHHHhcchhHHhCCCCcCCCCCCcCCEEEEe
Confidence 3321111111111111 11 367899999999999999842 279999995
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0024 Score=65.45 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=116.1
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEE--EeCC--C-----CCHHHHHHHHhcCce
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTL--YLTD--T-----TSPDEIKLARKTGVV 77 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~--~~~~--~-----~~~~el~~l~~~G~v 77 (329)
+.+|+.||+|||++||++.|.....+.++...+.+.+ .+ .++++..-. .... + -..+++.++.+..-+
T Consensus 104 a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~-~p--~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v 180 (588)
T PRK10027 104 ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQ-AR--QNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQV 180 (588)
T ss_pred HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhh-CC--CeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCc
Confidence 3468899999999999999999999988877776554 33 565543211 0001 1 134577777764334
Q ss_pred eEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 020186 78 FAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEH 157 (329)
Q Consensus 78 ~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~H 157 (329)
.+.==.|++. +....|. +.+.++. .+ .|+++-=||=--+ ...+.. +++. |.. =+|
T Consensus 181 ~glgEvMn~~----~V~~~d~-~~~~ki~-~~--~~~~idGH~p~l~---------g~~L~a----y~aa--Gi~--sDH 235 (588)
T PRK10027 181 TGLAEMMDYP----GVISGQN-ALLDKLD-AF--RHLTLDGHCPGLG---------GKELNA----YIAA--GIE--NCH 235 (588)
T ss_pred eeEEeccCcc----ccccCCH-HHHHHHH-Hh--CCCceECCCCCCC---------hHHHHH----HHHc--CCC--CCc
Confidence 3442234331 1111243 4555544 33 5777666654211 112222 2221 332 334
Q ss_pred cC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC--CCCeEEecCCC
Q 020186 158 IT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG--SRKFFLGTDSA 233 (329)
Q Consensus 158 vS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G--~Id~~i~SDHa 233 (329)
-+ -.|+++-+|. -.+.. + ++ |+. ..|-++|..++.+- .- ++++||-.
T Consensus 236 E~~t~eea~eklr~----Gm~v~-------i------Re--gS~---------~~nl~~l~~~~~~~~~~~-~~l~TDd~ 286 (588)
T PRK10027 236 ESYQLEEGRRKLQL----GMSLM-------I------RE--GSA---------ARNLNALAPLINEFNSPQ-CMLCTDDR 286 (588)
T ss_pred ccCCHHHHHHHHHC----CCEEE-------E------eC--Ccc---------ccCHHHHHHHhhccCCCe-EEEEcCCC
Confidence 33 4555555552 12222 1 11 221 12334455544331 11 36777743
Q ss_pred -CCCcCcccccCCcCCccchhHHHHHHH-HHHH-hcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe
Q 020186 234 -PHERGRKECACGCAGIYNAPVALSLYA-KVFE-EMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK 297 (329)
Q Consensus 234 -Ph~~~eK~~~~~~~Gi~~~e~~lpll~-~~~~-~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~ 297 (329)
|...-++ | .+.... .... ..+++++.+++.|.|||+.||++ .| .|||++++
T Consensus 287 ~~~~l~~~-------G------hi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~d~G~IapG~~ADlvvld 347 (588)
T PRK10027 287 NPWEIAHE-------G------HIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVLLS 347 (588)
T ss_pred ChHHHHhc-------c------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEEc
Confidence 2111111 1 122222 2233 36799999999999999999996 34 69999994
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0071 Score=59.91 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~ 177 (329)
+.+.++++.+++.|.++.+|+-....... ...+.... -+...+.+..|.|.. +.+.++.+++ ..++.
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~-----~~~~~~l~---~~g~~~~~~~i~H~~~~~~~~~~~la~---~g~~v 269 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWGAT-----PRGVEQLH---DAGLLGPDLNLVHGNDLSDDELKLLAD---SGGSF 269 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcccC-----CCHHHHHH---HCCCCCCCeEEEecCCCCHHHHHHHHH---cCCCE
Confidence 77889999999999999999842211000 01122211 123446677788877 5667777765 35666
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
-+||.+-. +. +.. .||++ +.+..|.-= .+|||+.+... .. .-.+..+.
T Consensus 270 ~~~P~~~~-----~~----g~~---~~~~~---------~~~~~Gv~v-~lGtD~~~~~~---------~~-~~~~~~~a 317 (449)
T PRK08204 270 SVTPEIEM-----MM----GHG---YPVTG---------RLLAHGVRP-SLGVDVVTSTG---------GD-MFTQMRFA 317 (449)
T ss_pred EEChHHHh-----hh----cCC---CCcHH---------HHHhcCCce-eeccccCCCCC---------cC-HHHHHHHH
Confidence 78996421 11 111 24432 334557653 89999754311 00 00111222
Q ss_pred HHHHHH---------------HhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 258 LYAKVF---------------EEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 258 ll~~~~---------------~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
+..... ...++..++++..+.|+|+.+|+.. | .|||+|+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld 380 (449)
T PRK08204 318 LQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLID 380 (449)
T ss_pred HHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEc
Confidence 211110 1246889999999999999999832 3 69999995
|
|
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.053 Score=54.04 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHH-----HHHHHH--hcCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI-----LQPLIQ--RLPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~-----~~~~la--~~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++.+++.|.++.+|+.... .|.+...+. +. .+. ...+.++.+.|.. +.+.++++++
T Consensus 218 e~l~~~~~~a~~~g~~~~~H~~e~~-------~~~~~~~~~~g~~~~~-~l~~~g~l~~~~~~~H~~~l~~~d~~~la~- 288 (457)
T PRK12393 218 ELLREVARAARGMGLRLHSHLSETV-------DYVDFCREKYGMTPVQ-FVAEHDWLGPDVWFAHLVKLDAEEIALLAQ- 288 (457)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCH-------HHHHHHHHHhCCCHHH-HHHHcCCCCCCeEEEEEecCCHHHHHHHHH-
Confidence 7888999999999999999996321 111111000 00 111 1234454444443 5667777775
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..+.+-.||.. +.. +|. -.||+ .+.+..|.-= .+|||..+.. +-.
T Consensus 289 --~g~~v~~~P~s-----n~~----lg~---g~~~~---------~~~~~~Gv~v-~lGtD~~~~~-----------~~~ 333 (457)
T PRK12393 289 --TGTGIAHCPQS-----NGR----LGS---GIAPA---------LAMEAAGVPV-SLGVDGAASN-----------ESA 333 (457)
T ss_pred --cCCeEEECchh-----hhh----hcc---cCCCH---------HHHHHCCCeE-EEecCCcccC-----------CCc
Confidence 46777888842 111 121 12443 2345557654 8999964311 111
Q ss_pred ch--hHHHHHHHHHHH---hcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 251 NA--PVALSLYAKVFE---EMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 251 ~~--e~~lpll~~~~~---~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
.+ +..+..+..... ..+++++++++++.|||+++|+++ | .|||+|+|
T Consensus 334 d~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~~~G~l~~G~~ADlvv~d 392 (457)
T PRK12393 334 DMLSEAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLDAIGTLAVGQAADLAIYD 392 (457)
T ss_pred cHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCCCCCCcCCCCcCCEEEEe
Confidence 11 111111111111 137899999999999999999853 3 69999994
|
|
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0051 Score=57.76 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhH--HHHHHHHHHHH
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFD--REKVFIDTILQ 142 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~--~E~~av~~~~~ 142 (329)
..|++..+..+.+.++|+.+... +. -.++ ..++.+++.++++|+|+.+|........+... +-...+..
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~----~~-~~~~-~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~--- 185 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQ----GF-YPDD-PRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDD--- 185 (293)
T ss_pred HHHHHHHHHhcCceEEEeccccc----CC-CCCC-hHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHH---
Confidence 34788887753356999976421 11 1233 67899999999999999999997643211111 11112222
Q ss_pred HHHHhcCCCeEEEEecC--CHHHHHHHHcccC-CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHIT--TMDAVKFVESCKE-GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+.+..+.++.+.|.. -+--.+.+..+++ .+++.|++-. ..|+-+| .+|+-+
T Consensus 186 -va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~----------------~~~~~~~--------~~~~~~ 240 (293)
T COG2159 186 -VARKFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGV----------------RPKYFAP--------PLLEFL 240 (293)
T ss_pred -HHHHCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeecc----------------ccccCCh--------HHHHHH
Confidence 3457789999999998 3333333333333 5677776421 1222233 344443
Q ss_pred Hc---CCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 220 TS---GSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 220 ~~---G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.+ ..| +.||| .|+...++. + .......++-+..-+++-.|++|++|+.
T Consensus 241 ~~~~~dki--lFGSD-~P~~~~~~~--------------l---~~~~~l~l~~e~k~kiL~~NA~rll~l~ 291 (293)
T COG2159 241 KELGPDKI--LFGSD-YPAIHPEVW--------------L---AELDELGLSEEVKEKILGENAARLLGLD 291 (293)
T ss_pred HhcccCeE--EecCC-CCCcCHHHH--------------H---HHHHhcCCCHHHHHHHHHHhHHHHhCcC
Confidence 33 444 67999 566432221 1 1122235566778889999999999983
|
|
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0088 Score=57.73 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC--CeEEEEecCCHH------HHHHHHccc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ--LKVVMEHITTMD------AVKFVESCK 171 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~--~~lhi~HvSt~~------sl~~i~~ak 171 (329)
+.+.++++.+++.|.++.+|+...... .. ..+.+.+ ..++..| .++.+.|..... ..+.++..+
T Consensus 189 e~l~~~~~~A~~~g~~v~~H~~e~~~~-~~-----~~~~~~~--~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~ 260 (398)
T cd01293 189 ESLDTLFELAQEHGLDIDLHLDETDDP-GS-----RTLEELA--EEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLA 260 (398)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCc-ch-----hHHHHHH--HHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHH
Confidence 788899999999999999998643210 00 1111222 2233334 367788876432 123333333
Q ss_pred CCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccc
Q 020186 172 EGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYN 251 (329)
Q Consensus 172 ~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~ 251 (329)
+..+....||..-...... . +..|. + .....+-+.+..|.- +.++||..+- ++...|...
T Consensus 261 ~~g~~v~~~p~s~~~l~~~-~--------~~~~~-~--~~~~~~~~~~~~Gv~-v~lGTD~~~~-------~~~~~~~~~ 320 (398)
T cd01293 261 EAGISVVSLPPINLYLQGR-E--------DTTPK-R--RGVTPVKELRAAGVN-VALGSDNVRD-------PWYPFGSGD 320 (398)
T ss_pred HcCCeEEeCCCcchhhccc-c--------cCCCC-C--CCCCcHHHHHHCCCe-EEECCCCCCC-------CCcCCCCCC
Confidence 3466777888643211000 0 00111 1 111234455566765 4899998521 111112222
Q ss_pred hhHHHHHHHH-HHHhcC----CHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 252 APVALSLYAK-VFEEMG----ALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 252 ~e~~lpll~~-~~~~~~----~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
.+..+.. ....++ +.+++.+..+.|+|+.+|+..| .|||+++|
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~G~l~~Gk~ADlv~~d 374 (398)
T cd01293 321 ---MLEVANLAAHIAQLGTPEDLALALDLITGNAARALGLEDYGIKVGCPADLVLLD 374 (398)
T ss_pred ---HHHHHHHHHHHHcCCChhhHHHHHHhcChhhhhhcCCcCcccccCCcceEEEEC
Confidence 1222211 111122 3478999999999999997322 79999994
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.013 Score=54.58 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
..+.+.++.++++|.||++|+.+... + ...+.+.+ .-......++.|.|.-.....+.++++.+..++.+.
T Consensus 136 ~~f~~~~~lA~~~~~Pv~iH~~~~~~------~-~~~~l~~l--~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~ 206 (293)
T cd00530 136 KVLRAAARAQKETGVPISTHTQAGLT------M-GLEQLRIL--EEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEF 206 (293)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCCCcc------c-cHHHHHHH--HHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEe
Confidence 46778899999999999999986410 0 01111222 111112234678899521133333333222333333
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcCCccchhHHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCAGIYNAPVALSL 258 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpl 258 (329)
+.--. + . . .-.|| .....+.+.++++.|-.| ++++|| +|+...... . + +-.+....+..
T Consensus 207 ~~~~~-~----------~-~-~~~~~--~~~~~~~l~~~~~~~~~d~ill~TD-~p~~~~~~~-~-~--~~~~~~~~~~~ 266 (293)
T cd00530 207 DGIGK-D----------K-I-FGYPS--DETRADAVKALIDEGYGDRLLLSHD-VFRKSYLEK-R-Y--GGHGYDYILTR 266 (293)
T ss_pred CCCCc-c----------c-c-cCCCC--HHHHHHHHHHHHHCCCcCCEEEeCC-cCchhhhhh-c-c--CCCChHHHHHH
Confidence 31000 0 0 0 00111 133455688888888664 367888 355322100 0 1 11222223333
Q ss_pred HHHHH-HhcCCHHHHHHHHhhhhhhhc
Q 020186 259 YAKVF-EEMGALDKLEAFTSFNGPDFY 284 (329)
Q Consensus 259 l~~~~-~~~~~l~~~v~~~s~nPAkif 284 (329)
+...+ .+.++.+.+.+++..||+|+|
T Consensus 267 ~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 267 FIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 33333 346799999999999999987
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.053 Score=53.67 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhHc-CCcEEEecCCCCCCCChhHHHHHHHHH-------HHHHHHH--hcCCCeEEEEecC--CHHHHHHH
Q 020186 100 GKCVHVLEEMVEQ-NMPLLVHGEVTDPIVDIFDREKVFIDT-------ILQPLIQ--RLPQLKVVMEHIT--TMDAVKFV 167 (329)
Q Consensus 100 ~~l~~~l~~~~~~-~~~v~vHaEd~~~~~~~~~~E~~av~~-------~~~~~la--~~~~~~lhi~HvS--t~~sl~~i 167 (329)
+.+.++.+.+++. |.++.+|...... |...+.+ .+. .+. ...+.++.+.|.. +.+.++++
T Consensus 211 ~~l~~~~~lA~~~~~~~i~~Hl~E~~~-------e~~~~~~~~g~~~~~~~-~l~~~G~l~~~~~~~H~~~l~~~~~~~l 282 (433)
T PRK09228 211 EQLEAAGALAREHPDVWIQTHLSENLD-------EIAWVKELFPEARDYLD-VYERYGLLGPRAVFAHCIHLEDRERRRL 282 (433)
T ss_pred HHHHHHHHHHHHCCCCceEEeecCChh-------HHHHHHHHcCCCCCHHH-HHHHcCCCCCCeEEEeccCCCHHHHHHH
Confidence 7888999999997 9999999864421 1111111 010 111 2245677888877 56677777
Q ss_pred HcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcC
Q 020186 168 ESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247 (329)
Q Consensus 168 ~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~ 247 (329)
++ ..+.+..||..= ... +.+ .+| +.+.+..|.-- .+|||..+-.
T Consensus 283 a~---~g~~v~~~P~sn-----~~l--g~g-----~~~---------~~~~~~~Gv~v-~lGtD~~~~~----------- 326 (433)
T PRK09228 283 AE---TGAAIAFCPTSN-----LFL--GSG-----LFD---------LKRADAAGVRV-GLGTDVGGGT----------- 326 (433)
T ss_pred HH---cCCeEEECCccH-----Hhh--cCC-----CcC---------HHHHHHCCCeE-EEecCCCCCC-----------
Confidence 76 356778898631 111 111 233 33455568665 8999963210
Q ss_pred Cccchh-HHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 248 GIYNAP-VALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 248 Gi~~~e-~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
...-++ ..+.+...... ..++.++++++.+.|||+++|++. | .|||++++
T Consensus 327 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d 386 (433)
T PRK09228 327 SFSMLQTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFVVLD 386 (433)
T ss_pred CCCHHHHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEc
Confidence 111111 11111111112 246899999999999999999852 3 69999994
|
|
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.013 Score=57.97 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHH-HHHHH----HHHHHH--hcCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV-FIDTI----LQPLIQ--RLPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~-av~~~----~~~~la--~~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++.+++.|.++.+|+.... .|.. ++.+. +. .+. ...+.+..+.|.. +.+.++.+++
T Consensus 202 ~~l~~~~~~A~~~g~~v~~H~~e~~-------~~~~~~~~~~g~~~~~-~l~~~g~l~~r~~~~H~~~l~~~~~~~la~- 272 (443)
T PRK09045 202 ENLERIRTLAEQLDLPIHIHLHETA-------QEIADSLKQHGQRPLA-RLARLGLLGPRLIAVHMTQLTDAEIALLAE- 272 (443)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCcH-------HHHHHHHHHhCCCHHH-HHHHcCCCCCCeEEEEecCCCHHHHHHHHH-
Confidence 7899999999999999999985221 1111 11110 10 111 1234444455554 4566777765
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..++.-.||..- +. .+. -.+|+ ..| +..|..- .++||+.+... +..
T Consensus 273 --~g~~i~~~P~~~------~~---~~~---~~~~~------~~l---~~~Gv~v-~lGtD~~~~~~----------~~~ 318 (443)
T PRK09045 273 --TGCSVVHCPESN------LK---LAS---GFCPV------AKL---LQAGVNV-ALGTDGAASNN----------DLD 318 (443)
T ss_pred --cCCeEEECHHHH------hh---hcc---CCCcH------HHH---HHCCCeE-EEecCCCCCCC----------Ccc
Confidence 356666788421 11 010 01222 233 4457775 99999864211 111
Q ss_pred -chhHHHHHHHHHH----HhcCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEEEe
Q 020186 251 -NAPVALSLYAKVF----EEMGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKLTK 297 (329)
Q Consensus 251 -~~e~~lpll~~~~----~~~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi~~ 297 (329)
--|..+..++... ...+++++++++++.|||+.+|++ + | .|||+|+|
T Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d 378 (443)
T PRK09045 319 LFGEMRTAALLAKAVAGDATALPAHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVD 378 (443)
T ss_pred HHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEe
Confidence 1133444333221 124799999999999999999984 2 3 69999994
|
|
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0027 Score=61.63 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC--eEEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL--KVVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~--~lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
+.+.++++.+++.|.++.+|+..... ...+...+ . .|. --|.+++ +.+.++.++++ .+..
T Consensus 207 ~~l~~~~~~a~~~g~~v~~H~~~~~~--------~~~v~~~~--~----~g~~~i~H~~~l-~~~~~~~la~~---gv~~ 268 (382)
T PRK14085 207 DQSRRVLTAGRAAGLGLRVHGNQLGP--------GPGVRLAV--E----LGAASVDHCTYL-TDADVDALAGS---GTVA 268 (382)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCcccC--------ChHHHHHH--H----cCCCcHHHhCCC-CHHHHHHHHHc---CCEE
Confidence 78999999999999999999974211 01122222 1 122 1244444 45667777653 4566
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
.+||.+-+. . +.+ .|| +.+.+..|..- +++||+.|+..- + ..++
T Consensus 269 ~~~P~~~~~-----~--~~~-----~~~---------~~~l~~aGv~v-~lgsD~~~~~~~---------~-----~~~~ 312 (382)
T PRK14085 269 TLLPGAEFS-----T--RQP-----YPD---------ARRLLDAGVTV-ALASDCNPGSSY---------T-----SSMP 312 (382)
T ss_pred EECcHHHHh-----c--CCC-----Cch---------HHHHHHCCCcE-EEEeCCCCCCCh---------H-----HHHH
Confidence 678875321 1 001 122 44556668876 999998654310 1 1223
Q ss_pred HHHH-HH-HhcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEec
Q 020186 258 LYAK-VF-EEMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTKI 298 (329)
Q Consensus 258 ll~~-~~-~~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~~ 298 (329)
.... .. ...++.++++++.+.|||+.+|++ .| .|||+|+|.
T Consensus 313 ~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~~G~l~~G~~ADlvv~d~ 362 (382)
T PRK14085 313 FCVALAVRQMGMTPAEAVWAATAGGARALRRDDVGVLAVGARADLHVLDA 362 (382)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCCCcCCCCCCCEEEEcC
Confidence 2221 12 236899999999999999999984 23 699999953
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00038 Score=64.88 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHH--HHHhcCCHHHHHHHHhhhhhhhcCC-CCC-
Q 020186 214 AVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK--VFEEMGALDKLEAFTSFNGPDFYGL-PRN- 289 (329)
Q Consensus 214 aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~--~~~~~~~l~~~v~~~s~nPAkifgl-~~~- 289 (329)
+-.+....|.+| +++||..|.+ +|...+. .....++|++.++++|.|||+.+|| ++|
T Consensus 285 sA~ela~~glLD-iLsSDY~P~S------------------Ll~A~F~La~~~~~~~lpqAvalvt~nPA~algl~DRG~ 345 (377)
T COG3454 285 SARELAQHGLLD-ILSSDYVPAS------------------LLHAAFRLADLGSNISLPQAVALVTKNPARALGLTDRGR 345 (377)
T ss_pred hHHHHHhCCcee-eecccCCcHH------------------HHHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCCcccc
Confidence 445677889999 9999998875 3333222 2233569999999999999999999 555
Q ss_pred -----cccEEEE
Q 020186 290 -----TSKIKLT 296 (329)
Q Consensus 290 -----dADlvi~ 296 (329)
+|||+.+
T Consensus 346 Ia~GlrADlv~v 357 (377)
T COG3454 346 IAPGLRADLVRV 357 (377)
T ss_pred cccccccceEEE
Confidence 7999987
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0079 Score=59.03 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHc--ccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVES--CKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~--ak~~~v 175 (329)
+.++++++.+.+.|.++.+||+-.+ .+. +|-..|.. -+-|.. +.+..+++++ +- .++
T Consensus 220 ~e~~~~l~~a~~~g~~v~~HA~~~~-----------g~~------~A~~~g~~-s~~H~~~ld~~~~~~~a~~~~g-~~~ 280 (406)
T COG1228 220 EEIRAVLAAALKAGIPVKAHAHGAD-----------GIK------LAIRLGAK-SAEHGTLLDHETAALLAEKGAG-TPV 280 (406)
T ss_pred HHHHHHHHHHHHCCCceEEEecccc-----------hHH------HHHHhCcc-eehhhhhcCHhHHHHHhhccCC-Ccc
Confidence 6778899999999999999998542 121 22222222 122322 4556666654 21 111
Q ss_pred EEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHH
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVA 255 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~ 255 (329)
.+..|-. .+.+.. .+++..-.++..|.- ++++|||-|-+. .. .
T Consensus 281 -~~l~p~~---------------~~~l~e-----~~~~~~~~l~~~GV~-vai~TD~~~~~~-----------~~----~ 323 (406)
T COG1228 281 -PVLLPRT---------------KFELRE-----LDYKPARKLIDAGVK-VAIGTDHNPGTS-----------HG----S 323 (406)
T ss_pred -ccccchh---------------hhhhhc-----ccchhHHHHHHCCCE-EEEEcCCCCCch-----------hh----H
Confidence 1211111 111111 112223344556776 499999965431 11 2
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEE
Q 020186 256 LSLYAKV-FEEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLT 296 (329)
Q Consensus 256 lpll~~~-~~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~ 296 (329)
+.+.... +...++.++.++..+.||||.+|+.. | +|||+||
T Consensus 324 l~~~m~l~~~~gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~ 373 (406)
T COG1228 324 LALEMALAVRLGMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVW 373 (406)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEE
Confidence 3332222 23348999999999999999999852 3 8999999
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.089 Score=52.09 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHHHHHH--hcCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQPLIQ--RLPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~~~la--~~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++.+++.|.++.+|.-... .|...+.+ .+. .+. ...+-++.+.|.. +.+.++++++.
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~-------~e~~~~~~~~g~~~v~-~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~ 276 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGI-------YDVSDSHKKYGKDIVE-RLADFGLLGEKTLAAHCIYLSDEEIDLLKET 276 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCh-------HHHHHHHHHcCCCHHH-HHHhCCCCCCCcEEEEeecCCHHHHHHHHhc
Confidence 7888999999999999999987542 11111110 110 111 2346677666765 56668888764
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
.+.+-.||.- +.. .+. =.|| +++.+..|.-= .+|||-... .+.
T Consensus 277 ---g~~v~~~P~s------n~~---l~~---g~~p---------~~~~~~~Gv~v-~lGtD~~~~------------d~~ 319 (442)
T PRK07203 277 ---DTFVVHNPES------NMG---NAV---GYNP---------VLEMIKNGILL-GLGTDGYTS------------DMF 319 (442)
T ss_pred ---CCeEEECchh------hhh---ccc---CCCC---------HHHHHHCCCeE-EEcCCCCCc------------cHH
Confidence 4667778842 111 110 0244 34555667664 999995210 100
Q ss_pred chhHHHHHHHHHHHh---cCCHHHHHHHHhhhhhhhcC--CC-C-C------cccEEEEe
Q 020186 251 NAPVALSLYAKVFEE---MGALDKLEAFTSFNGPDFYG--LP-R-N------TSKIKLTK 297 (329)
Q Consensus 251 ~~e~~lpll~~~~~~---~~~l~~~v~~~s~nPAkifg--l~-~-~------dADlvi~~ 297 (329)
. |..+..+...... ..+++++.++.+.||||.+| +. + | .|||+++|
T Consensus 320 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d 378 (442)
T PRK07203 320 E-SYKVANFKHKHAGGDPNVGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVD 378 (442)
T ss_pred H-HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEc
Confidence 0 2233332221111 23478899999999999988 31 1 2 79999994
|
|
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.029 Score=50.58 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
..+.+.++.+++.|++|.+|+.... .+ +..+ +.+....+.-|.|.-+ .+.+.+++..+..++.++
T Consensus 108 ~~~~~~~~~a~~~~~pv~iH~~~~~-------~~---~~~~----l~~~~~~~~~i~H~~~-~~~~~~~~~~~~g~~~~~ 172 (252)
T TIGR00010 108 EVFRAQLQLAEELNLPVIIHARDAE-------ED---VLDI----LREEKPKVGGVLHCFT-GDAELAKKLLDLGFYISI 172 (252)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCcc-------HH---HHHH----HHhcCCCCCEEEEccC-CCHHHHHHHHHCCCeEee
Confidence 5677779999999999999998532 11 2222 2222112234557643 223333333213556665
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLY 259 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll 259 (329)
+.... .++.+.-.++++.+-.+.| +++||- |+-.... ..|-..-...++-+
T Consensus 173 ~~~~~---------------------~~~~~~~~~~i~~~~~dri--l~~TD~-p~~~~~~-----~~~~~~~p~~i~~~ 223 (252)
T TIGR00010 173 SGIVT---------------------FKNAKSLREVVRKIPLERL--LVETDS-PYLAPVP-----YRGKRNEPAFVRYT 223 (252)
T ss_pred ceeEe---------------------cCCcHHHHHHHHhCCHHHe--EecccC-CCCCCCC-----CCCCCCCChhHHHH
Confidence 53110 0111222234443322344 799996 4421100 01111111234433
Q ss_pred HHHH--HhcCCHHHHHHHHhhhhhhhcCC
Q 020186 260 AKVF--EEMGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 260 ~~~~--~~~~~l~~~v~~~s~nPAkifgl 286 (329)
...+ ...++.+.+.+++..||+|+|||
T Consensus 224 ~~~~a~~~g~~~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 224 VEAIAEIKGMDVEELAQITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhCc
Confidence 2222 23679999999999999999986
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=49.71 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChh-HHHHH---HHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF-DREKV---FIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEG 173 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~-~~E~~---av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~ 173 (329)
+.+.++++.+++.|.++.+|+..... ... ..+.. .+.. + .-....+.++-+.|.. +.+.++++++ .
T Consensus 186 e~l~~~~~~A~~~g~~v~~H~~e~~~--~~~~~~~~~g~~~ie~-~--~~~g~l~~~~~~~H~~~l~~~d~~~la~---~ 257 (418)
T PRK06380 186 ETYLKAKEIAEKYDTIMHMHLSETRK--EVYDHVKRTGERPVEH-L--EKIGFLNSKLIAAHCVWATYHEIKLLSK---N 257 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHH--HHHHHHHHhCCCHHHH-H--HHCCCCCCCeEEEEeecCCHHHHHHHHH---c
Confidence 78999999999999999999975421 000 00000 0111 1 1112234454444544 4666777765 4
Q ss_pred ceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccch-
Q 020186 174 FVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA- 252 (329)
Q Consensus 174 ~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~- 252 (329)
.+.+-.||.... . .+. .-.|| +.+.+..|.- ..+|||-.... +...-+
T Consensus 258 g~~v~~~P~sn~-----~----l~~--~g~~p---------~~~~~~~Gv~-v~lGTD~~~~~----------~~~d~~~ 306 (418)
T PRK06380 258 GVKVSWNSVSNF-----K----LGT--GGSPP---------IPEMLDNGIN-VTIGTDSNGSN----------NSLDMFE 306 (418)
T ss_pred CCEEEECHHHHH-----h----hcc--CCCCc---------HHHHHHCCCe-EEEcCCCCcCC----------CCcCHHH
Confidence 678888997421 1 111 01233 3344556754 48999952110 011111
Q ss_pred hHHHHHHHHHHH----hcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 253 PVALSLYAKVFE----EMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 253 e~~lpll~~~~~----~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
+..+-+++.... ..++..++++..+.|+||.+|++.| .|||+++|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~G~l~~G~~ADlvv~d 361 (418)
T PRK06380 307 AMKFSALSVKNERWDASIIKAQEILDFATINAAKALELNAGSIEVGKLADLVILD 361 (418)
T ss_pred HHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCCCCCccCCCccCCEEEEe
Confidence 112211111111 1368899999999999999997433 79999994
|
|
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.057 Score=53.43 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHHHHHH--hcCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQPLIQ--RLPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~~~la--~~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.|.++++.+++.|.++.+|+-... .|...+.+ .+. .+. ...+.++.+.|.. +.+.++++.+.
T Consensus 197 e~l~~~~~~A~~~g~~v~~H~~e~~-------~e~~~~~~~~g~~~~~-~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~ 268 (435)
T PRK15493 197 ELLEECARIAVENQTMVHIHLSETE-------REVRDIEAQYGKRPVE-YAASCGLFKRPTVIAHGVVLNDNERAFLAEH 268 (435)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCH-------HHHHHHHHHhCCCHHH-HHHHcCCCCCCcEEEEeecCCHHHHHHHHHc
Confidence 7899999999999999999985431 11111111 010 112 2345566666665 67778888764
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
.+++-.||..-+ .+ +.| .||++ +.+..|.- ..+|||..+- +. ...
T Consensus 269 ---g~~v~~~P~sn~----~l---~~g-----~~p~~---------~~~~~Gv~-v~lGtD~~~~--------~~--~~d 313 (435)
T PRK15493 269 ---DVRVAHNPNSNL----KL---GSG-----IANVK---------AMLEAGIK-VGIATDSVAS--------NN--NLD 313 (435)
T ss_pred ---CCeEEEChHHHH----HH---hcC-----cccHH---------HHHHCCCe-EEEccCcccc--------CC--CcC
Confidence 456667886421 11 111 23433 34445654 4899997431 00 111
Q ss_pred c-hhHHHHHHHHHHH----hcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe--cceeec
Q 020186 251 N-APVALSLYAKVFE----EMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK--IPWKVP 303 (329)
Q Consensus 251 ~-~e~~lpll~~~~~----~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~--~~~~v~ 303 (329)
- -|..+++++.... ..+++++++++.+.|||+.+|+++ | .|||+++| ..+.+.
T Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~~ 380 (435)
T PRK15493 314 MFEEMRIATLLQKGIHQDATALPVETALTLATKGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQ 380 (435)
T ss_pred HHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCCCCcC
Confidence 1 1344554443211 256899999999999999999853 3 69999995 345443
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.02 Score=57.51 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHHHHHHh--cCCCeEEEEecC--CH---------
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQPLIQR--LPQLKVVMEHIT--TM--------- 161 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~~~la~--~~~~~lhi~HvS--t~--------- 161 (329)
+.|.++++.+++.|.++.+|+-... .|...+.+ .+. .+.+ ..+.++.+.|.. +.
T Consensus 221 e~l~~~~~~A~~~g~~v~~H~~e~~-------~~~~~~~~~~g~~~~~-~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~ 292 (488)
T PRK06151 221 DLLRRTAAAARELGCPVRLHCAQGV-------LEVETVRRLHGTTPLE-WLADVGLLGPRLLIPHATYISGSPRLNYSGG 292 (488)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCch-------HHHHHHHHHcCCCHHH-HHHHcCCCCCCcEEEEEEEcCCccccccCCH
Confidence 7899999999999999999994321 11111111 110 1111 223454444444 23
Q ss_pred HHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCccc
Q 020186 162 DAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE 241 (329)
Q Consensus 162 ~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~ 241 (329)
+.++.+++ ..+++-.||... .. ++. -.+|+ -+.+..|.- ..+|||..|..
T Consensus 293 ~~~~~la~---~g~~v~~~P~~~----~~-----~g~---~~~p~---------~~l~~~Gv~-v~lGtD~~~~~----- 342 (488)
T PRK06151 293 DDLALLAE---HGVSIVHCPLVS----AR-----HGS---ALNSF---------DRYREAGIN-LALGTDTFPPD----- 342 (488)
T ss_pred HHHHHHHh---cCCEEEECchhh----hh-----hcc---ccccH---------HHHHHCCCc-EEEECCCCCcc-----
Confidence 66777665 456677888421 11 121 12333 334555765 49999963310
Q ss_pred ccCCcCCccchhHHHHHHHHHHH----hcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 242 CACGCAGIYNAPVALSLYAKVFE----EMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 242 ~~~~~~Gi~~~e~~lpll~~~~~----~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
-+.. ..+.+...... ..+++++++++.+.|||+++|++. | .|||+|+|
T Consensus 343 ------~~~~--~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvvld 401 (488)
T PRK06151 343 ------MVMN--MRVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDDLGRLAPGAKADIVVFD 401 (488)
T ss_pred ------HHHH--HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCcCCEEEEe
Confidence 0111 12222222121 136899999999999999999853 4 69999995
|
|
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.15 Score=48.72 Aligned_cols=237 Identities=16% Similarity=0.083 Sum_probs=118.2
Q ss_pred cchhcccCccEEEECCCCCC--CCCcHHHHHHHHHHHHhhCCCCccEEEEEEEE---eCCCCCHHHHHHHHh-cCceeEE
Q 020186 7 LPICSVSHYGRAIVMPNLKP--PITTTAAAVAYRESILKALPASSNFTPLMTLY---LTDTTSPDEIKLARK-TGVVFAV 80 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p--~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~---~~~~~~~~el~~l~~-~G~v~~~ 80 (329)
+..+.+-|+|.|=-+.+..| .....+.+...++..+. . +|+.+.+ +. +......+-+.+..+ .+++ |-
T Consensus 75 l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~--~--idlq~va-fPq~g~~~~~~~~l~~~al~~advv-GG 148 (329)
T PRK06886 75 IELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKH--D--IILKFAN-QTLKGVIEPTAKKWFDIGSEMVDMI-GG 148 (329)
T ss_pred HHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcC--c--ceEEEEe-cChhhccCccHHHHHHHHHHhCCEE-eC
Confidence 34566778888777776655 33445555444444332 2 7876642 10 011111122222211 2322 21
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT 160 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt 160 (329)
- + .+.+.+....+ +.+..+|+.++++|+++-+|+.+... ....+.+.+.+. .+..-.+.|+-+.|..+
T Consensus 149 i--P--~~~~~~~~~~~--e~l~~~~~lA~~~g~~Id~Hlde~~~---~~~~~le~l~~~---~~~~Gl~grV~~sH~~~ 216 (329)
T PRK06886 149 L--P--YRDELDYGRGL--EAMDILLDTAKSLGKMVHVHVDQFNT---PKEKETEQLCDK---TIEHGMQGRVVAIHGIS 216 (329)
T ss_pred c--c--CCcCCCCCCCH--HHHHHHHHHHHHcCCCeEEeECCCCc---hhHHHHHHHHHH---HHHcCCCCCEEEEEecc
Confidence 0 1 11111112222 78999999999999999999885431 111122222211 12222345888888775
Q ss_pred HHH---------HHHHHcccCCceEEEecchh-hhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEec
Q 020186 161 MDA---------VKFVESCKEGFVAATVTPQH-LVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGT 230 (329)
Q Consensus 161 ~~s---------l~~i~~ak~~~vt~Et~phh-L~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~S 230 (329)
-.. ++++++ ..+.+=+||.- |+|+...-. -+...=-|| +.+.+..|.- ..+||
T Consensus 217 L~~~~~~~~~~~i~~La~---agi~Vv~~P~snl~l~~~~~~----~p~~rGv~p---------v~eL~~aGV~-V~lGt 279 (329)
T PRK06886 217 IGAHSKEYRYRLYQKMRE---ADMMVIACPMAWIDSNRKEDL----MPFHNALTP---------ADEMIPEGIT-VALGT 279 (329)
T ss_pred ccCcChhhHHHHHHHHHH---cCCeEEECchhhhhhcccccc----CcCCCCCCC---------HHHHHHCCCe-EEEec
Confidence 443 455554 45677778863 333321100 000111123 2244445765 48999
Q ss_pred CCCCCCcCcccccCCcCCccch-hHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 231 DSAPHERGRKECACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 231 DHaPh~~~eK~~~~~~~Gi~~~-e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
|-..- ||.+.|-..+ |. +-++.. ..+..++.++.++.+.|+||.+|+.
T Consensus 280 Dnv~D-------~~~p~g~~Dmle~-~~l~~~-~~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 280 DNICD-------YMVPLCEGDMWQE-LSLLAA-GCRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred CCCcc-------cCCCCCCCCHHHH-HHHHHH-HcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 97421 2333344332 11 111111 1233479999999999999999984
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=51.18 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHH-----HHHHHHHHh--cCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID-----TILQPLIQR--LPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~-----~~~~~~la~--~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++.+++ |.++.+|+.+.. .|...+. +-+. .+++ ..+.++.+.|.. +.+.++++++
T Consensus 207 e~l~~~~~~a~~-g~~i~~H~~e~~-------~e~~~~~~~~g~~~i~-~l~~~g~l~~~~~~~H~~~l~~~~~~~la~- 276 (418)
T cd01313 207 EQLAALAALASE-KAPVHIHLAEQP-------KEVDDCLAAHGRRPVE-LLLDHGHLDARWCLVHATHLTDNETLLLGR- 276 (418)
T ss_pred HHHHHHHHHHhc-CCceEEEeCCCH-------HHHHHHHHHcCCCHHH-HHHHcCCCCCCEEEEeCCCCCHHHHHHHHH-
Confidence 789999999999 999999984321 1111111 0110 1222 346677777776 5677888776
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..+++-.||..-+. + +.+ .||+| +.+..|.- ..+|||- +. +..
T Consensus 277 --~g~~v~~~P~sn~~----l---g~g-----~~p~~---------~l~~~Gv~-v~lGtD~-~~------------~~d 319 (418)
T cd01313 277 --SGAVVGLCPTTEAN----L---GDG-----IFPAA---------ALLAAGGR-IGIGSDS-NA------------RID 319 (418)
T ss_pred --cCCEEEECCCchhh----c---cCC-----CCCHH---------HHHHCCCc-EEEecCC-CC------------CcC
Confidence 46778889964211 1 111 25544 33455755 4899993 21 111
Q ss_pred chhHHHHH-HH-HHHH---------hcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 251 NAPVALSL-YA-KVFE---------EMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 251 ~~e~~lpl-l~-~~~~---------~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
-++.+..+ +. .... ..++..+++++.+.|+||.+|++.| .|||+++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~~Gsle~Gk~ADlvvld 383 (418)
T cd01313 320 LLEELRQLEYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLATGALEAGARADLLSLD 383 (418)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCCCCeECCCCccCEEEEc
Confidence 11111111 11 1111 1578999999999999999998532 79999994
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.13 Score=49.82 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHH---HHHHHHHHHHHHhcCCCe-EEEEecC--CHHHHHHHHcccCC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREK---VFIDTILQPLIQRLPQLK-VVMEHIT--TMDAVKFVESCKEG 173 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~---~av~~~~~~~la~~~~~~-lhi~HvS--t~~sl~~i~~ak~~ 173 (329)
+.+.++++.+++.|.++.+|+...... .....|. ..+. .+...|.. -.+.|.. +.+.++++++ .
T Consensus 179 ~~l~~~~~~A~~~g~~v~~H~~e~~~e-~~~~~~~~G~~~v~------~~~~~G~~~~~i~H~~~~~~~~i~~la~---~ 248 (375)
T PRK07213 179 EELKFICKECKREKKIFSIHAAEHKGS-VEYSLEKYGMTEIE------RLINLGFKPDFIVHATHPSNDDLELLKE---N 248 (375)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCchhH-HHHHHHHcCCChHH------HHHhcCCCCCEEEECCCCCHHHHHHHHH---c
Confidence 789999999999999999999543210 0000000 0122 22223433 0255554 4566777765 4
Q ss_pred ceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchh
Q 020186 174 FVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253 (329)
Q Consensus 174 ~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e 253 (329)
.+++..||..= .+. +.+ .|| +.+.++.|.- +.++||..+.. -..
T Consensus 249 g~~v~~~P~sn-----~~l--~~g-----~~~---------v~~l~~~Gv~-v~lGTD~~~~~------------~~~-- 292 (375)
T PRK07213 249 NIPVVVCPRAN-----ASF--NVG-----LPP---------LNEMLEKGIL-LGIGTDNFMAN------------SPS-- 292 (375)
T ss_pred CCcEEECCcch-----hhh--ccC-----Ccc---------HHHHHHCCCE-EEEeeCCCCCc------------hHh--
Confidence 66778899521 111 111 244 3345556754 48999975321 001
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEec
Q 020186 254 VALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTKI 298 (329)
Q Consensus 254 ~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~~ 298 (329)
++--+.... ...++..++.++.+.|+|+.+|++. | .|||+++|.
T Consensus 293 -~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~G~l~~G~~ADlvv~d~ 344 (375)
T PRK07213 293 -IFREMEFIYKLYHIEPKEILKMATINGAKILGLINVGLIEEGFKADFTFIKP 344 (375)
T ss_pred -HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCCcCCcCCCCcccEEEEcC
Confidence 111111111 1257899999999999999999842 3 699999953
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.69 Score=45.87 Aligned_cols=160 Identities=9% Similarity=0.041 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHH---------HHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHH
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV---------FIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVE 168 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~---------av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~ 168 (329)
+.+.++.+.+++.|.++.+|.-... .|.. .+.+. .-....+-++.+.|.. +.+.++++.
T Consensus 204 ~~l~~~~~lA~~~~~~i~~H~~E~~-------~e~~~~~~~~g~~~~~~l---~~~G~l~~~~~~~H~~~~~~~d~~~la 273 (441)
T TIGR03314 204 AGLEMCREAVQATGRGFHIHVAEDI-------YDVEDSHHKYGKDIVERL---ADFGLLGSKTLAAHCIYLSDREIELLN 273 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCH-------HHHHHHHHHcCCCHHHHH---HHCCCCCCCeEEEEEecCCHHHHHHHH
Confidence 7888999999999999999986542 1111 11111 1112345576666655 567788887
Q ss_pred cccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCC
Q 020186 169 SCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAG 248 (329)
Q Consensus 169 ~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~G 248 (329)
+. .+++=.||-- +..- +.| -||++ +.+..|.- ..||||-.+..
T Consensus 274 ~~---g~~v~~cP~s------n~~l-~~G-----~~p~~---------~~~~~Gv~-v~LGtD~~~~d------------ 316 (441)
T TIGR03314 274 ET---DTFVVHNPES------NMGN-AVG-----YNPVL---------RMFKNGIL-LGLGTDGYTSD------------ 316 (441)
T ss_pred Hc---CCcEEECHHH------Hhhh-ccC-----CCCHH---------HHHHCCCE-EEEcCCCCCcC------------
Confidence 64 4566678831 1110 111 25543 33445643 48999953210
Q ss_pred ccchhHHHHHHHHHHHh---cCCHHHHHHHHhhhhhhhcC----CCC------CcccEEEEe--cceeecCCcc
Q 020186 249 IYNAPVALSLYAKVFEE---MGALDKLEAFTSFNGPDFYG----LPR------NTSKIKLTK--IPWKVPEAFS 307 (329)
Q Consensus 249 i~~~e~~lpll~~~~~~---~~~l~~~v~~~s~nPAkifg----l~~------~dADlvi~~--~~~~v~~~~~ 307 (329)
+ --|..+.+++..... ...+.++.++.+.|.|+.+| .+. +.|||+++| ..|.++..+.
T Consensus 317 ~-~~em~~a~~~~~~~~~~~~~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~ 389 (441)
T TIGR03314 317 M-FESLKFANFKHKDAGGDLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNI 389 (441)
T ss_pred H-HHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhc
Confidence 0 002222222221111 11356788888999999764 221 279999994 5666654443
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.79 Score=42.03 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=65.0
Q ss_pred CHHHHHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 020186 64 SPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQP 143 (329)
Q Consensus 64 ~~~el~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~ 143 (329)
..++++.+.+.| +.|+|+.... .+. .|. ..+.+.++++++.|.++.+|+....+ ..+..
T Consensus 82 ~~~~l~~~~~~g-~rGvRl~~~~----~~~--~~~-~~~~~~~~~~~~~gl~v~~~~~~~~l---------~~l~~---- 140 (263)
T cd01311 82 TDAELKEMHDAG-VRGVRFNFLF----GGV--DNK-DELDEIAKRAAELGWHVQVYFDAVDL---------PALLP---- 140 (263)
T ss_pred CHHHHHHHHHCC-CeEEEEeccc----CCC--CCH-HHHHHHHHHHHHcCCEEEEEeCHhhH---------HHHHH----
Confidence 457888888888 5799986531 111 244 77899999999999999999875421 12222
Q ss_pred HHHhcCCCeEEEEecCCHH--------H-HHHHHcccCCceEEEecch
Q 020186 144 LIQRLPQLKVVMEHITTMD--------A-VKFVESCKEGFVAATVTPQ 182 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~--------s-l~~i~~ak~~~vt~Et~ph 182 (329)
.+.+. +.++.+.|+..+. . -+.++.++..+|++.++--
T Consensus 141 l~~~~-~l~ivldH~G~p~~~~~~~~~~~~~~l~~l~~pNV~~k~Sg~ 187 (263)
T cd01311 141 FLQKL-PVAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGNVWVKVSGP 187 (263)
T ss_pred HHHHC-CCCEEEECCCCCCCCCCCCCHhHHHHHHHHhcCCEEEEecch
Confidence 23455 9999999998532 2 2334433226899998764
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.27 Score=48.53 Aligned_cols=154 Identities=12% Similarity=0.130 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHHHHHH--hcCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQPLIQ--RLPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~~~la--~~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.|.++++.+++.|.++.+|+..... |..++.. .+. .+. ...+.++.+.|.. +.+.++++++
T Consensus 190 e~l~~~~~~A~~~g~~v~~H~~e~~~-------~~~~~~~~~G~~~i~-~l~~~g~l~~r~~~~H~~~l~~~~~~~la~- 260 (430)
T PRK06038 190 EFLSKVKKLANKDGVGIHIHVLETEA-------ELNQMKEQYGMCSVN-YLDDIGFLGPDVLAAHCVWLSDGDIEILRE- 260 (430)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCCHH-------HHHHHHHHhCCCHHH-HHHHcCCCCCCeEEEEEecCCHHHHHHHHh-
Confidence 78999999999999999999875421 1111111 010 111 2235554444443 3455777765
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..+..-.||..-.. . +.+ .+|+| +.+..|.- ..+|||..+.. +..
T Consensus 261 --~g~~v~~~P~~n~~----~---~~~-----~~p~~---------~~~~~Gv~-v~lGtD~~~~~-----------~~~ 305 (430)
T PRK06038 261 --RGVNVSHNPVSNMK----L---ASG-----IAPVP---------KLLERGVN-VSLGTDGCASN-----------NNL 305 (430)
T ss_pred --cCCEEEEChHHhhh----h---ccC-----CCCHH---------HHHHCCCe-EEEeCCCCccC-----------CCc
Confidence 35666788863211 1 001 13332 34455654 49999953210 111
Q ss_pred c-h-hHHHHHHHHHHH----hcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 251 N-A-PVALSLYAKVFE----EMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 251 ~-~-e~~lpll~~~~~----~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
. + +..+..+..... ..++++++++..+.|||+.+|++.| .|||+++|
T Consensus 306 d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~~G~l~~G~~ADlvvld 364 (430)
T PRK06038 306 DMFEEMKTAALLHKVNTMDPTALPARQVLEMATVNGAKALGINTGMLKEGYLADIIIVD 364 (430)
T ss_pred CHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHhHHHHHHhCCCCCccCCCcccCEEEEe
Confidence 1 1 111211221111 2468999999999999999998533 79999994
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.088 Score=49.38 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecCCHHHHHHHHcccCCceE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHITTMDAVKFVESCKEGFVA 176 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvSt~~sl~~i~~ak~~~vt 176 (329)
..++.+.+..+++|.|+++|.+.... ... .+ .+.+..|+ ++.|.|+.....++.+++.-+.-++
T Consensus 139 kvl~Aaa~a~~~TG~pi~~Ht~~~~~----------g~e-~l--~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~ 205 (292)
T PRK09875 139 KVFIAAALAHNQTGRPISTHTSFSTM----------GLE-QL--ALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY 205 (292)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCCccc----------hHH-HH--HHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCE
Confidence 45666667778889999999775421 121 12 34455576 7999999644444444332113445
Q ss_pred EEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHH-HHcCCCC-eEEecCCCCCCcCcccccCCcCCccchhH
Q 020186 177 ATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSA-VTSGSRK-FFLGTDSAPHERGRKECACGCAGIYNAPV 254 (329)
Q Consensus 177 ~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~a-l~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~ 254 (329)
.|-+ .+ +.+.+ .| .++|..++.. +..|..| +++++|=...+ ...++| | .|...
T Consensus 206 l~fD----~~--------g~~~~---~p----d~~r~~~i~~L~~~Gy~drilLS~D~~~~~---~~~~~g--g-~G~~~ 260 (292)
T PRK09875 206 VQFD----TI--------GKNSY---YP----DEKRIAMLHALRDRGLLNRVMLSMDITRRS---HLKANG--G-YGYDY 260 (292)
T ss_pred EEec----cC--------CCccc---CC----HHHHHHHHHHHHhcCCCCeEEEeCCCCCcc---cccccC--C-CChhH
Confidence 5533 11 11111 12 3345444444 4566333 36777753221 111233 2 34333
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcC
Q 020186 255 ALSLYAKVFE-EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 255 ~lpll~~~~~-~~~~l~~~v~~~s~nPAkifg 285 (329)
.+.-+.-.+. +.++-+++-+++..||+|+|+
T Consensus 261 i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 261 LLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 4443333333 467999999999999999985
|
|
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.29 Score=48.34 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhHcC-CcEEEecCCCCCCCChhHHHHHHHHH-------HHHHHHH--hcCCCeEEEEecC--CHHHHHHH
Q 020186 100 GKCVHVLEEMVEQN-MPLLVHGEVTDPIVDIFDREKVFIDT-------ILQPLIQ--RLPQLKVVMEHIT--TMDAVKFV 167 (329)
Q Consensus 100 ~~l~~~l~~~~~~~-~~v~vHaEd~~~~~~~~~~E~~av~~-------~~~~~la--~~~~~~lhi~HvS--t~~sl~~i 167 (329)
+.+.++++.+++.| .++.+|+.... .|.+.+.+ .+. .+. ...|.++.+.|.. +.+.++++
T Consensus 208 e~l~~~~~~A~~~g~~~v~~H~~e~~-------~e~~~~~~~~g~~~~p~~-~l~~~G~l~~~~~l~H~~~l~~~~~~~l 279 (429)
T cd01303 208 ELLAALGKLAKEHPDLHIQTHISENL-------DEIAWVKELFPGARDYLD-VYDKYGLLTEKTVLAHCVHLSEEEFNLL 279 (429)
T ss_pred HHHHHHHHHHHHCCCCeEEEeeCCCH-------HHHHHHHHHcCCCCCHHH-HHHHCCCCCCCcEEEeCCCCCHHHHHHH
Confidence 78999999999999 99999985331 12222211 110 111 2235677777776 56677777
Q ss_pred HcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcC
Q 020186 168 ESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247 (329)
Q Consensus 168 ~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~ 247 (329)
++ ..+.+-.||..-. .+ +. -.+| +.+.+..|.-= .++||..+-.
T Consensus 280 ~~---~g~~v~~~P~sn~----~l-----~~---g~~~---------~~~~~~~Gv~v-~lGtD~~~~~----------- 323 (429)
T cd01303 280 KE---RGASVAHCPTSNL----FL-----GS---GLFD---------VRKLLDAGIKV-GLGTDVGGGT----------- 323 (429)
T ss_pred HH---cCCEEEECccchh----hh-----cc---CCCC---------HHHHHHCCCeE-EEeccCCCCC-----------
Confidence 65 4567777885311 01 10 1233 33455567653 8999964210
Q ss_pred Cccch-hHHHHHHHHHHH-------hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 248 GIYNA-PVALSLYAKVFE-------EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 248 Gi~~~-e~~lpll~~~~~-------~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
...-+ +..+-+...... ..++.++++++.+.||||.+|++. | .|||+|+|
T Consensus 324 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld 389 (429)
T cd01303 324 SFSMLDTLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVID 389 (429)
T ss_pred CccHHHHHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEc
Confidence 11101 111111111111 135889999999999999999842 3 69999994
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=1 Score=44.09 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhHcCCcEEEecCC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEV 122 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd 122 (329)
+.+.++++.++++|.++.+|.-.
T Consensus 206 ~~l~~~~~lA~~~g~~v~~Hv~e 228 (410)
T PRK06846 206 KSLDTMFQIAVDFNKGVDIHLHD 228 (410)
T ss_pred HHHHHHHHHHHHhCCCcEEEECC
Confidence 67889999999999999999663
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.69 Score=42.74 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 214 AVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 214 aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.+.+.++.+-+| +++.||- |+.... ..-|-.+-...++..+..+. +.++.+++.+.+..|+.++||++
T Consensus 187 ~~~~~~~~ipldrlLlETD~-P~~~p~-----~~~g~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N~~~lf~~~ 257 (265)
T PRK10812 187 QLRDAARYVPLDRLLVETDS-PYLAPV-----PHRGKENQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFARLFHID 257 (265)
T ss_pred HHHHHHHhCChhhEEEecCC-CCCCCc-----CCCCCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 344445444332 2667884 764321 11132222335555444332 46899999999999999999994
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.052 Score=52.58 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=88.7
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCC---CH-HHHHHHHhcCceeEEEE
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTT---SP-DEIKLARKTGVVFAVKL 82 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~---~~-~el~~l~~~G~v~~~K~ 82 (329)
+..+++||+||++||+++.+...+.+.+....+.+.+... ..|..++........ .+ .++..+.+. .+.+.
T Consensus 81 ~~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv--~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~g~ 155 (387)
T cd01308 81 LSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGI--TCFVYTGSYEVPTRTITGSIRKDLLLIDKV---IGVGE 155 (387)
T ss_pred HHHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCC--EEEEEecccCCCCcCchhhHHHHHHHHHHh---cCcce
Confidence 4577899999999999766665666666555555444333 344332211001011 11 123332221 11111
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCC------cEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeE-EE
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNM------PLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKV-VM 155 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~------~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~l-hi 155 (329)
..- +.....-++. ..+.+++++++..+. .+.+|.... ..++.+++ .+.+..|+++ |+
T Consensus 156 ~~~---~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~----------~~~~~~i~--~~~~~~G~~~~~~ 219 (387)
T cd01308 156 IAI---SDHRSSQPTV-EELARIAAEARVGGLLGGKAGIVHIHLGDG----------KRALSPIF--ELIEETEIPITQF 219 (387)
T ss_pred EEE---cCCCCCCCCH-HHHHHHHHHHHHHHHhcCCCcEEEEEeCCc----------hHHHHHHH--HHHHhcCCCccee
Confidence 110 0011112333 678888888876443 366666643 23566666 6777889988 99
Q ss_pred EecCCHHHHH----HHHcccC---CceEEEecchhh
Q 020186 156 EHITTMDAVK----FVESCKE---GFVAATVTPQHL 184 (329)
Q Consensus 156 ~HvSt~~sl~----~i~~ak~---~~vt~Et~phhL 184 (329)
+|.++..+.+ .++.+|+ ..+.++++|||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~ 255 (387)
T cd01308 220 LPTHINRTAPLFEQGVEFAKMGGTIDLTSSIDPQFR 255 (387)
T ss_pred ECCcccCCHHHHHHHHHHHHcCCcEEEECCCCcccc
Confidence 9999887777 4555554 567888888877
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.85 Score=44.35 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHH---------------------------HHHHHHHHHHHhcCCCe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV---------------------------FIDTILQPLIQRLPQLK 152 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~---------------------------av~~~~~~~la~~~~~~ 152 (329)
+.+.++.+.+++.|.++.+|..... .|.. .+.+ + .-....+-+
T Consensus 163 e~l~~~~~lA~~~g~~i~~Hl~E~~-------~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~-l--~~~g~L~~~ 232 (381)
T cd01312 163 ELAQDLIDLAKKLNLPLSTHFLESK-------EEREWLEESKGWFKHFWESFLKLPKPKKLATAIDF-L--DMLGGLGTR 232 (381)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCcH-------HHHHHHHHhccchhhHhhhhcccccccCCCCHHHH-H--HHcCCCCCC
Confidence 7888999999999999999976431 1111 1111 1 111234567
Q ss_pred EEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEec
Q 020186 153 VVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGT 230 (329)
Q Consensus 153 lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~S 230 (329)
+.+.|.. +.+.++++++ ..+.+-.||.. +.. .+.. .+| +-+.+..|.- ..++|
T Consensus 233 ~~~~H~~~l~~~~~~~l~~---~g~~v~~~P~s-----n~~----lg~g---~~p---------~~~~~~~Gv~-v~lGt 287 (381)
T cd01312 233 VSFVHCVYANLEEAEILAS---RGASIALCPRS-----NRL----LNGG---KLD---------VSELKKAGIP-VSLGT 287 (381)
T ss_pred cEEEECCcCCHHHHHHHHH---cCCeEEECcch-----hhh----hcCC---CcC---------HHHHHHCCCc-EEEeC
Confidence 7777766 4667777765 35677888842 111 1111 133 3344556765 48999
Q ss_pred CCCCCCcCcccccCCcCCccchhHHHHHHHHHHHh---cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 231 DSAPHERGRKECACGCAGIYNAPVALSLYAKVFEE---MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 231 DHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~---~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
|..+.. +...-++.+ -+++..... ..+..+++++.+.|+|+.+|++.| .|||+++|
T Consensus 288 D~~~~~----------~~~d~~~~~-~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~~Gsle~Gk~ADlvv~d 352 (381)
T cd01312 288 DGLSSN----------ISLSLLDEL-RALLDLHPEEDLLELASELLLMATLGGARALGLNNGEIEAGKRADFAVFE 352 (381)
T ss_pred CCCccC----------CCCCHHHHH-HHHHHhcccccccCCHHHHHHHHHHHHHHHhCCCCCccCCCCcccEEEEe
Confidence 953210 111111111 111111111 246789999999999999997422 79999995
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.5 Score=39.94 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=74.5
Q ss_pred HHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEecc
Q 020186 102 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTP 181 (329)
Q Consensus 102 l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~p 181 (329)
+.++++.+++.|.++.+|+.......+ ...+...+ .+ ....-.|.+|+ +.+.++++++ ..+.+..||
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~g-----~~~i~~~~--~~--~~~~i~H~~~l-~~~~~~~la~---~g~~v~~~P 193 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESVG-----MTDIERAL--DL--EPDLLVHGTHL-TDEDLELVRE---NGVPVVLCP 193 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCCC-----chhHHHHH--hC--CCCEEEEcCCC-CHHHHHHHHH---cCCcEEECh
Confidence 889999999999999999874421000 11233332 22 11222455554 4566777776 467788899
Q ss_pred hhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccch-hHHHHHHH
Q 020186 182 QHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA-PVALSLYA 260 (329)
Q Consensus 182 hhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~-e~~lpll~ 260 (329)
.. +... +.| .||+ .+.+..|.- ..+|||..+.. ...-+ |..+-+..
T Consensus 194 ~s-----n~~l--~~g-----~~p~---------~~l~~~Gv~-v~lGtD~~~~~-----------~~~~~~~~~~~~~~ 240 (263)
T cd01305 194 RS-----NLYF--GVG-----IPPV---------AELLKLGIK-VLLGTDNVMVN-----------EPDMWAEMEFLAKY 240 (263)
T ss_pred hh-----HHHh--CCC-----CCCH---------HHHHHCCCc-EEEECCCCccC-----------CCCHHHHHHHHHHH
Confidence 42 1110 111 1443 345556754 48999975421 11111 11111111
Q ss_pred HHHHhcCCHHHHHHHHhhhhhhh
Q 020186 261 KVFEEMGALDKLEAFTSFNGPDF 283 (329)
Q Consensus 261 ~~~~~~~~l~~~v~~~s~nPAki 283 (329)
......++..++.+..+.|+||+
T Consensus 241 ~~~~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 241 SRLQGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred hcccccCCHHHHHHHHhhccccC
Confidence 11112458999999999999985
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.8 Score=39.55 Aligned_cols=139 Identities=15% Similarity=0.063 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC-CHHHHHHHHcccCCceEEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT-TMDAVKFVESCKEGFVAAT 178 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS-t~~sl~~i~~ak~~~vt~E 178 (329)
+.+..+++.+++.|.++.+|+....- .. .+...+ ... ....=.|-.|++ .++.++++++ ..+.++
T Consensus 173 ~~~~~~~~~A~~~g~~v~~H~~E~~~-----~~---~~~~a~--~~~-g~~~i~H~~~l~~~~~~~~~l~~---~gi~v~ 238 (325)
T cd01320 173 EKFVRAFQRAREAGLRLTAHAGEAGG-----PE---SVRDAL--DLL-GAERIGHGIRAIEDPELVKRLAE---RNIPLE 238 (325)
T ss_pred HHHHHHHHHHHHCCCceEEeCCCCCC-----HH---HHHHHH--HHc-CCcccchhhccCccHHHHHHHHH---cCCeEE
Confidence 67889999999999999999853311 01 122222 101 112224555665 3557777765 578999
Q ss_pred ecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHH
Q 020186 179 VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSL 258 (329)
Q Consensus 179 t~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpl 258 (329)
+||. .+... +.+.. .-.|| +.+.+..|.- .+++||..+.. + .. ++--
T Consensus 239 ~~P~-----sn~~l--~~~~~-~~~~p---------~~~l~~~Gv~-v~lgTD~~~~~-----------~-~~---~~~e 285 (325)
T cd01320 239 VCPT-----SNVQT--GAVKS-LAEHP---------LRELLDAGVK-VTINTDDPTVF-----------G-TY---LTDE 285 (325)
T ss_pred ECCC-----ccccc--cccCC-cccCh---------HHHHHHCCCE-EEECCCCCccc-----------C-CC---HHHH
Confidence 9993 11111 11111 11233 3345566765 48999964221 1 11 1111
Q ss_pred HHHHHHh-cCCHHHHHHHHhhhhhhhcCC
Q 020186 259 YAKVFEE-MGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 259 l~~~~~~-~~~l~~~v~~~s~nPAkifgl 286 (329)
+...... .++.+++.+ ++.|+++.--+
T Consensus 286 ~~~~~~~~~l~~~el~~-~~~na~~~~f~ 313 (325)
T cd01320 286 YELLAEAFGLTEEELKK-LARNAVEASFL 313 (325)
T ss_pred HHHHHHHcCCCHHHHHH-HHHHHHHHhCC
Confidence 2112222 678888776 66898886433
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.25 Score=45.14 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCe--EEEEecCC--HHHHHHHHcccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLK--VVMEHITT--MDAVKFVESCKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~--lhi~HvSt--~~sl~~i~~ak~~~v 175 (329)
..+.+.++.+++++.|+++|+.+. ...++ .+.+..+.+ --|.|--+ .+.++.+.+ .
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~a-------------~~~~l--~il~~~~~~~~~~i~H~f~g~~~~~~~~~~---~-- 170 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRKA-------------HEELL--EILKEYGPPNLRVIFHCFSGSPEEAKKFLD---L-- 170 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEESH-------------HHHHH--HHHHHTTGGTSEEEETT--S-HHHHHHHHH---T--
T ss_pred HHHHHHHHHHHHhCCcEEEecCCc-------------HHHHH--HHHHhccccceeEEEecCCCCHHHHHHHHh---c--
Confidence 567788899999999999999863 11222 222222221 35778733 323332221 1
Q ss_pred EEEecchhhhcchhhhcCCCCCCceEEcCCCCC--hhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchh
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPHNYCLPVLKR--EIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~--~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e 253 (329)
|-++-++|.+-. .++...+.+.+-...| ++-||- |+....+. .|-...+
T Consensus 171 ---------------------g~~~S~~~~~~~~~~~~~~~~~~~ip~dri--llETD~-P~~~~~~~-----~~~~~~p 221 (255)
T PF01026_consen 171 ---------------------GCYFSFSGAITFKNSKKVRELIKAIPLDRI--LLETDA-PYLAPDPY-----RGKPNEP 221 (255)
T ss_dssp ---------------------TEEEEEEGGGGSTTSHHHHHHHHHS-GGGE--EEE-BT-TSSECTTS-----TTSE--G
T ss_pred ---------------------CceEEecccccccccHHHHHHHhcCChhhE--EEcCCC-CcCCcccc-----CCCCCCh
Confidence 223334433222 2334455566655565 788994 65432111 1322223
Q ss_pred HHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcC
Q 020186 254 VALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 254 ~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifg 285 (329)
..++-.+..+ . +.++++++.+.+..|..++||
T Consensus 222 ~~i~~~~~~la~~~~~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 222 SNIPKVAQALAEIKGISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp GGHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 3455444333 2 478999999999999999997
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.1 Score=42.65 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHHHHHHh--cCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQPLIQR--LPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~~~la~--~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++ +++.|.++.+|+.+.. .|...+.+ -+. .+.+ ..+.++.+.|.. +.+.++++++
T Consensus 216 e~l~~~~~-a~~~g~~v~~H~~e~~-------~e~~~~~~~~G~~~v~-~l~~~g~l~~~~~~~H~~~l~~~d~~~la~- 285 (455)
T TIGR02022 216 EQLAAVLQ-ASDRQAPVHIHVAEQQ-------KEVDDCLAWSGRRPVE-WLLDHGPVDARWCLVHATHLTDEETALLAR- 285 (455)
T ss_pred HHHHHHHH-HHhCCCceEEEECCCh-------HHHHHHHHHhCCCHHH-HHHHcCCCCCCEEEEEeecCCHHHHHHHHH-
Confidence 67888888 7899999999995331 11111110 010 1222 345566666655 5677888876
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..+++-.||..- .. .+.. -||++ +.+..|.- ..+|||..+ +..
T Consensus 286 --~g~~v~~~P~sn-----~~----lg~g---~~pi~---------~l~~~Gv~-v~lGTD~~~-------------~~d 328 (455)
T TIGR02022 286 --SGAVAGLCPTTE-----AN----LGDG---IFPAV---------DFVAAGGR-FGIGSDSHV-------------VID 328 (455)
T ss_pred --cCCeEEEChhhh-----cc----ccCC---CCCHH---------HHHHCCCe-EEEECCCCC-------------CCC
Confidence 467888899631 11 1111 24543 34555755 489999422 111
Q ss_pred ch-hHHHHHHHHHHH-----------hcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 251 NA-PVALSLYAKVFE-----------EMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 251 ~~-e~~lpll~~~~~-----------~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
-+ |..+-.+...+. ...+.++++++.+.|+||.+|++.| .|||+|+|
T Consensus 329 ~~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~~~GsLe~Gk~ADlvvld 393 (455)
T TIGR02022 329 VAEELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGLATGGLRAGARADFLTLD 393 (455)
T ss_pred HHHHHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCcCEEEEe
Confidence 11 112211111111 1235678899999999999997422 79999995
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.1 Score=42.64 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-----HHHHHHHh--cCCCeEEEEecC--CHHHHHHHHcc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-----ILQPLIQR--LPQLKVVMEHIT--TMDAVKFVESC 170 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-----~~~~~la~--~~~~~lhi~HvS--t~~sl~~i~~a 170 (329)
+.+.++++.+ +.|.++.+|+-+.. .|...+.+ .+. .+++ ..+.++.+.|.. +.+.++++++
T Consensus 216 e~l~~~~~~A-~~g~~i~~H~~e~~-------~e~~~~~~~~g~~~~~-~l~~~g~l~~~~~l~H~~~l~~~d~~~la~- 285 (456)
T PRK09229 216 DQLAAVLALA-APDGPVHIHIAEQT-------KEVDDCLAWSGARPVE-WLLDHAPVDARWCLVHATHLTDAETARLAR- 285 (456)
T ss_pred HHHHHHHHHh-cCCCceEEEeCCCH-------HHHHHHHHHcCCCHHH-HHHHcCCCCCCeEEEeeccCCHHHHHHHHH-
Confidence 7899999999 99999999994321 11111100 010 1222 345566666655 5666777765
Q ss_pred cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCcc
Q 020186 171 KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIY 250 (329)
Q Consensus 171 k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~ 250 (329)
..+++-.||.. +.. .+. -.+|+| +.+..|.- ..++||..+ . ..
T Consensus 286 --~g~~v~~~P~s-----n~~----lg~---g~~p~~---------~l~~~Gv~-v~lGtD~~~-~------------~d 328 (456)
T PRK09229 286 --SGAVAGLCPTT-----EAN----LGD---GIFPAV---------DYLAAGGR-FGIGSDSHV-S------------ID 328 (456)
T ss_pred --cCCeEEECchh-----hhh----hcC---CCCCHH---------HHHHCCCe-EEEecCCCC-C------------CC
Confidence 46777889953 111 111 124442 33455755 489999421 1 11
Q ss_pred chhHHHHHH-H-HHHH----------hcCCHHHHHHHHhhhhhhhcCCCC------CcccEEEEec
Q 020186 251 NAPVALSLY-A-KVFE----------EMGALDKLEAFTSFNGPDFYGLPR------NTSKIKLTKI 298 (329)
Q Consensus 251 ~~e~~lpll-~-~~~~----------~~~~l~~~v~~~s~nPAkifgl~~------~dADlvi~~~ 298 (329)
-++.+-.+. . .... .+++..++.++.+.|+|+.+|+.. |.|||+|+|.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~~GsLe~Gk~ADlvvld~ 394 (456)
T PRK09229 329 LVEELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGRAIGGLAVGARADLVVLDL 394 (456)
T ss_pred HHHHHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCCCcCCcCCCCccCEEEEeC
Confidence 111111111 1 1111 244678999999999999999732 2799999953
|
|
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.61 Score=42.89 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC--eEEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL--KVVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~--~lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
..+.+.++.++++++||++|+.+..- .+..++ +..+. +. |.|-=| .+.+..+++-
T Consensus 114 ~vf~~ql~lA~~~~~Pv~iH~r~a~~----------~~~~il-----~~~~~~~~~-i~H~fs-G~~~~a~~~l------ 170 (258)
T PRK11449 114 WLLDEQLKLAKRYDLPVILHSRRTHD----------KLAMHL-----KRHDLPRTG-VVHGFS-GSLQQAERFV------ 170 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCccH----------HHHHHH-----HhcCCCCCe-EEEcCC-CCHHHHHHHH------
Confidence 45667778888888888888876421 122222 12221 22 455544 2244444321
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCC--hhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKR--EIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVA 255 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~--~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~ 255 (329)
+ .|.++-+++.+-- .+....+.+.+-.+.| .+.||. |+-... ...|-.+....
T Consensus 171 --------------~---~G~~iS~~g~it~~~~~~~~~~~~~ipldri--L~ETD~-P~l~p~-----~~~~~~n~p~~ 225 (258)
T PRK11449 171 --------------Q---LGYKIGVGGTITYPRASKTRDVIAKLPLASL--LLETDA-PDMPLN-----GFQGQPNRPEQ 225 (258)
T ss_pred --------------H---CCCEEEeCccccccCcHHHHHHHHhCChhhE--EEecCC-CCCCCC-----CCCCCCCCChH
Confidence 0 1334444444421 1223345556655565 789995 764211 11233333345
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCC
Q 020186 256 LSLYAKVFE--EMGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 256 lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl 286 (329)
++-.+..+. +..+.+.+.+.+..|-.|+||+
T Consensus 226 ~~~~~~~ia~l~~~~~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 226 AARVFDVLCELRPEPADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCc
Confidence 665554322 4678999999999999999985
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.3 Score=43.33 Aligned_cols=107 Identities=8% Similarity=0.000 Sum_probs=61.4
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEE--E-E--eC-CC--CCHHHHHHHHhcCce
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMT--L-Y--LT-DT--TSPDEIKLARKTGVV 77 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~--~-~--~~-~~--~~~~el~~l~~~G~v 77 (329)
-+.+...=|+||+|.=|.-.--+.-.+.++...+.+++ .+ .|+.++.. + + +. .+ -..+++.++.+.--|
T Consensus 96 FA~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~-~p--l~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~V 172 (584)
T COG1001 96 FARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKE-TP--LKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEV 172 (584)
T ss_pred HHHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhh-CC--eEEEEecccCccCCccccCCceecHHHHHHHhhCCCc
Confidence 35677888999999988433334445666666666554 45 67766432 0 0 00 11 134567777664323
Q ss_pred eEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecC
Q 020186 78 FAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGE 121 (329)
Q Consensus 78 ~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaE 121 (329)
.+.==+|++. +. +..+ ..+..-++.+++.|+++-=||=
T Consensus 173 igl~E~Mn~p----gV-i~~D-~~~l~kl~a~~~~~k~VdGHap 210 (584)
T COG1001 173 IGLGEMMNFP----GV-IEGD-PDMLAKLEAARKAGKPVDGHAP 210 (584)
T ss_pred cchhhhcCCc----hh-ccCC-HHHHHHHHHHHHcCCeecccCC
Confidence 2321223321 11 1222 6677888999999999988875
|
|
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=4.7 Score=39.53 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHH---------------------HHHHHHHHhcCCCeEEEEec
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID---------------------TILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~---------------------~~~~~~la~~~~~~lhi~Hv 158 (329)
+.+.++.+.+++.|.++.+|..... .|.+.+. +.+. .+...-+.+..+.|.
T Consensus 190 e~l~~~~~~A~~~~~~i~~H~~E~~-------~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~-~l~~~g~~~~~~~H~ 261 (408)
T PRK08418 190 ILAKKALQLAKKENLLVSTHFLESK-------AEREWLEESKGWFKKFFEKFLKEPKPLYTPKE-FLELFKGLRTLFTHC 261 (408)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCH-------HHHHHHHhccCchhhhhhhhcccccccCCHHH-HHHHhCCCCeEEEec
Confidence 7899999999999999999987532 1111110 1110 122222456778887
Q ss_pred C--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCC
Q 020186 159 T--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHE 236 (329)
Q Consensus 159 S--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~ 236 (329)
. +.+.++++++. .+++-.||-- +... +.| .||++ +.+..|.- ..+|||-.+-.
T Consensus 262 ~~~~~~di~~la~~---g~~v~~cP~s-----n~~l--g~g-----~~p~~---------~~~~~Gi~-v~lGtD~~~~~ 316 (408)
T PRK08418 262 VYASEEELEKIKSK---NASITHCPFS-----NRLL--SNK-----ALDLE---------KAKKAGIN-YSIATDGLSSN 316 (408)
T ss_pred ccCCHHHHHHHHHc---CCcEEECHhH-----HHHh--cCC-----CccHH---------HHHhCCCe-EEEeCCCCCCC
Confidence 6 77888888864 4455667731 1111 112 24443 34555654 48999932110
Q ss_pred cCcccccCCcCCccch-hHHHHHHHHHHHh---cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEec
Q 020186 237 RGRKECACGCAGIYNA-PVALSLYAKVFEE---MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTKI 298 (329)
Q Consensus 237 ~~eK~~~~~~~Gi~~~-e~~lpll~~~~~~---~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~~ 298 (329)
....-+ |..+-++ ..++ ..+.++++++.+.|+|+.+|++.| .|||+++|.
T Consensus 317 ----------~~~~~~~em~~~~~--~~~~~~~~~~~~~~l~~aT~~gA~alg~~~G~l~~G~~ADlv~~d~ 376 (408)
T PRK08418 317 ----------ISLSLLDELRAALL--THANMPLLELAKILLLSATRYGAKALGLNNGEIKEGKDADLSVFEL 376 (408)
T ss_pred ----------CCcCHHHHHHHHHH--HhccCCccccHHHHHHHHHHHHHHHhCCCCccccCCCccCEEEEeC
Confidence 011111 1111111 1111 113578999999999999997433 799999953
|
|
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.8 Score=39.84 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCe--EEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLK--VVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~--lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
..|..+|+.+++.|++|..|.|+.+. +.+.++. .+|+..|.+ -.|.|-+++.-+ .|
T Consensus 145 ~vl~~a~elA~dvdc~vqLHtes~~~---------~~~~~i~--~~ak~~G~~~~~VVkHha~p~v~-----------~~ 202 (285)
T COG1831 145 EVLEYAMELAKDVDCAVQLHTESLDE---------ETYEEIA--EMAKEAGIKPYRVVKHHAPPLVL-----------KC 202 (285)
T ss_pred HHHHHHHHHhhcCCCcEEEecCCCCh---------HHHHHHH--HHHHHhCCCcceeEeecCCccch-----------hh
Confidence 67788899999999999999997642 2233333 567777752 124444332211 11
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
| . .| ++|.+- ..|+...+++..|.- |++-||. ..++..|...-|--+ +|
T Consensus 203 ~-----------~-----~G----i~pSV~--asr~~v~~a~~~g~~-FmmETDy----IDDp~RpgavL~Pkt----VP 251 (285)
T COG1831 203 E-----------E-----VG----IFPSVP--ASRKNVEDAAELGPR-FMMETDY----IDDPRRPGAVLGPKT----VP 251 (285)
T ss_pred h-----------h-----cC----cCCccc--ccHHHHHHHHhcCCc-eEeeccc----ccCcccCCCcCCccc----hh
Confidence 1 0 11 234332 445578888888887 6999997 345544433334443 34
Q ss_pred H-HHHHHHh-cCCHHHHHHHHhhhhhhhcCCC
Q 020186 258 L-YAKVFEE-MGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 258 l-l~~~~~~-~~~l~~~v~~~s~nPAkifgl~ 287 (329)
= ....+.+ ..+-+.+.+..-+||.++||+.
T Consensus 252 rr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 252 RRTREILEKGDLTEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhCHHHHhCcc
Confidence 2 1122222 3468899999999999999973
|
|
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.088 Score=50.79 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEEEecceeec
Q 020186 266 MGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKLTKIPWKVP 303 (329)
Q Consensus 266 ~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi~~~~~~v~ 303 (329)
..++++.+++.|.||||.+||. + | +||||++|+.+.|.
T Consensus 324 ~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d~~v~ 369 (380)
T COG1820 324 GISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDLNVK 369 (380)
T ss_pred CCCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEECCCCcEE
Confidence 4589999999999999999984 3 3 89999997766664
|
|
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.80 E-value=2.2 Score=41.60 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=86.8
Q ss_pred chhcccCccEEEEC---CC--CCCCCCc--HHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEE
Q 020186 8 PICSVSHYGRAIVM---PN--LKPPITT--TAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80 (329)
Q Consensus 8 ~~Aa~GGvTtvidm---Pn--t~p~~~~--~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~ 80 (329)
..|+++|+||++-= |. |+-...+ +=.+++..+.++. -+ ++++|.+- ++......|.+..++|+ +++
T Consensus 145 ~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~-~p--~N~g~lgK---Gn~s~~~~L~Eqi~aGa-~Gl 217 (568)
T COG0804 145 EEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADG-LP--MNIGFLGK---GNASNPAPLAEQIEAGA-IGL 217 (568)
T ss_pred HHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhc-Cc--eeeEEeec---CCCCCchhHHHHHhhcc-cee
Confidence 46889999999865 32 2222222 2234444444433 23 78887652 44445677888889996 599
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT 160 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt 160 (329)
|+.-.+ +-+- ..+..+|.-+-+.++-|.+|...= .|.-.|.. .++..-|.-+|-.|.--
T Consensus 218 KlHEDW-------G~Tp--aaI~~~L~VAD~~DvqVaiHtDTL--------NEsGfvEd----Ti~A~~gRtIHtyHtEG 276 (568)
T COG0804 218 KLHEDW-------GATP--AAIDTCLSVADEYDVQVAIHTDTL--------NESGFVED----TIAAIKGRTIHTYHTEG 276 (568)
T ss_pred Eeeccc-------CCCH--HHHHHHHhhhhhhceEEEEeeccc--------ccccchHh----HHHHhcCceeEEeeccC
Confidence 998543 3333 678889999999999999998732 12223332 34556688889988763
Q ss_pred ---HHHHHHHHcccC
Q 020186 161 ---MDAVKFVESCKE 172 (329)
Q Consensus 161 ---~~sl~~i~~ak~ 172 (329)
.-+=++|+-+..
T Consensus 277 AGGGHAPDiikv~~~ 291 (568)
T COG0804 277 AGGGHAPDIIKVAGQ 291 (568)
T ss_pred CCCCCccHHHHHccC
Confidence 335567776643
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.13 E-value=4.4 Score=37.30 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=49.0
Q ss_pred ceEEcCCCCChh--hHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--hcCCHHHHHH
Q 020186 199 HNYCLPVLKREI--HRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--EMGALDKLEA 274 (329)
Q Consensus 199 ~~k~~PPLR~~~--dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~ 274 (329)
++-+++.+--+. +-+.+.+.+=...+ .+=||. |+-. |.+.-|-.+-+..++...+.+. +.++.+.+.+
T Consensus 173 yisisG~itfk~a~~~~ev~~~iPldrL--L~ETDs-Pyl~-----P~p~rGkrNeP~~v~~v~~~iAelk~~~~eeva~ 244 (256)
T COG0084 173 YISISGIVTFKNAEKLREVARELPLDRL--LLETDA-PYLA-----PVPYRGKRNEPAYVRHVAEKLAELKGISAEEVAE 244 (256)
T ss_pred EEEECceeecCCcHHHHHHHHhCCHhHe--EeccCC-CCCC-----CcCCCCCCCCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 444444444443 44455555544444 567885 7742 2122354444456666665443 4779999999
Q ss_pred HHhhhhhhhcCC
Q 020186 275 FTSFNGPDFYGL 286 (329)
Q Consensus 275 ~~s~nPAkifgl 286 (329)
.++.|--|+||+
T Consensus 245 ~t~~N~~~lf~~ 256 (256)
T COG0084 245 ITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
|
|
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.2 Score=38.80 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCC-CCCChhHHH---HHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTD-PIVDIFDRE---KVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEG 173 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~-~~~~~~~~E---~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~ 173 (329)
+.+..+.+.+++.|.++.+|+-... .+ ....| ...+.+. ......+-+..+.|.. +.+.++++++ .
T Consensus 198 ~~~~~~~~l~~~~~~~v~iH~~E~~~e~--~~~~~~~g~~~~~~~---~~~g~l~~~~~~~H~~~~~~~e~~~l~~---~ 269 (421)
T COG0402 198 ELLESLDELARKYGLPVHIHLAETLDEV--ERVLEPYGARPVERL---DLLGLLGSHTLLAHCVHLSEEELELLAE---S 269 (421)
T ss_pred HHHHHHHHHHhcCCCceEEEecCcHHHH--HHHHhhcCCCHHHHH---HHcCCCCCCeEEEEeccCCHHHHHHHhh---C
Confidence 6777777777888999999976442 10 00111 0011111 1222334566666665 4556666663 4
Q ss_pred ceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccch-
Q 020186 174 FVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA- 252 (329)
Q Consensus 174 ~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~- 252 (329)
.+++=.||= .+.. ++.. +.| +++.+..|.- ..++||-+.+... ..-+
T Consensus 270 g~~v~~cP~------sN~~---L~sG--~~p----------~~~~~~~gv~-v~~gTD~~~~~~~----------~d~l~ 317 (421)
T COG0402 270 GASVVHCPR------SNLK---LGSG--IAP----------VRRLLERGVN-VALGTDGAASNNV----------LDMLR 317 (421)
T ss_pred CCeEEECcc------hhcc---ccCC--CCC----------HHHHHHcCCC-EEEecCCccccCh----------HHHHH
Confidence 677778881 1211 1212 223 4455666743 4899997655310 0001
Q ss_pred hHHHHHHHHHHHh-cC-CHH--HHHHHHhhhhhhhcCC------CC-CcccEEEEe
Q 020186 253 PVALSLYAKVFEE-MG-ALD--KLEAFTSFNGPDFYGL------PR-NTSKIKLTK 297 (329)
Q Consensus 253 e~~lpll~~~~~~-~~-~l~--~~v~~~s~nPAkifgl------~~-~dADlvi~~ 297 (329)
|.....++..... .. +.. ++.++.+.|+||.||+ .. ++|||+++|
T Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~~~G~le~G~~ADlvvld 373 (421)
T COG0402 318 EMRTADLLQKLAGGLLAAQLPGEALDMATLGGAKALGLDDIGSLEVGKKADLVVLD 373 (421)
T ss_pred HHHHHHHHHHhhcCCCcccchHHHHHHHHhhHHHHcCCcccCCcccccccCEEEEc
Confidence 1122222222222 11 222 2789999999999994 12 279999994
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=7.8 Score=35.62 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=40.0
Q ss_pred HHHHHHcCCCCeEEecCCCCCCcCcccccCCc-CCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCC
Q 020186 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGC-AGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 215 Lw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~-~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl 286 (329)
+.+.+--..| ++-||- |+....... +. -|-.+-...++-.++.+. +.++.+.+.+.+..|--++||+
T Consensus 189 ~~~~ipldrl--LlETDa-P~l~P~~~~--~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 189 LLPLIPAERL--LLETDA-PYLLPRDLT--PKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANARTLFGL 258 (258)
T ss_pred HHHhCChHHE--EEeccC-CCCCCCCcC--CCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCc
Confidence 3344433443 677884 764321100 11 133333456666665443 4679999999999999999985
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=88.91 E-value=0.5 Score=44.70 Aligned_cols=154 Identities=11% Similarity=0.096 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecCCHHHHHHHHcc-cC-Cc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHITTMDAVKFVESC-KE-GF 174 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvSt~~sl~~i~~a-k~-~~ 174 (329)
..++.+-+..+++|+++++|++-... . ...+.+++ +..|+ ++.|+|+-...-++.+++. ++ ..
T Consensus 142 k~lrAaa~A~~~TG~pI~~H~~~g~~----~---~~e~~~il-----~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~ 209 (308)
T PF02126_consen 142 KVLRAAARAHKETGAPISTHTGRGTR----M---GLEQLDIL-----EEEGVDPSRVVIGHMDRNPDLDYHRELADRGVY 209 (308)
T ss_dssp HHHHHHHHHHHHHT-EEEEEESTTGT----C---HHHHHHHH-----HHTT--GGGEEETSGGGST-HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHhCCeEEEcCCCCCc----C---HHHHHHHH-----HHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCE
Confidence 34444455567889999999986531 0 11222222 23343 6999999866666655543 22 33
Q ss_pred eEEEecchhhhcchhhhcCCCCCCceEEcCCCC--ChhhHH-HHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcC--C
Q 020186 175 VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLK--REIHRQ-AVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCA--G 248 (329)
Q Consensus 175 vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR--~~~dr~-aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~--G 248 (329)
+..++.-+.++ | +..||.+. +.++|- .|.+.+.+|.-| ++++.|=+-.+ +...++.. |
T Consensus 210 l~~D~~g~~~~-----------g--~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~---~~~~~gg~g~~ 273 (308)
T PF02126_consen 210 LEFDTIGREFS-----------G--KDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKS---RLYRYGGGGYG 273 (308)
T ss_dssp EEETTTT-B-T-----------T--TTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEE---GSSSCCHHHHT
T ss_pred EEecCCccccc-----------C--cccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccc---cccccCCCCcc
Confidence 44333322110 0 00112222 234444 455666688764 35666643211 11122222 3
Q ss_pred ccch-hHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhc
Q 020186 249 IYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFY 284 (329)
Q Consensus 249 i~~~-e~~lpll~~~~~~~~~l~~~v~~~s~nPAkif 284 (329)
..-+ +.++|.|- .+.++-+++-+++..||+|+|
T Consensus 274 ~~~i~~~fiP~L~---~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 274 YIYILTRFIPRLK---ERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp TTHHHHTHHHHHH---HTTS-HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCCHHHHHHHHHHCHHHHc
Confidence 2221 44555443 246789999999999999987
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=88.60 E-value=13 Score=33.92 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCC-CCCC-Ch--hHHHHHHHHHH
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVT-DPIV-DI--FDREKVFIDTI 140 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~-~~~~-~~--~~~E~~av~~~ 140 (329)
...+..+.+.|. -++.+|+.......+...++ ..+.++-+.+++.|+.+++|+--. .+.. +. +......+.+.
T Consensus 13 ~~~~~~~~~~G~-~~vel~~~~~~~~~~~~~~~--~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~ 89 (273)
T smart00518 13 YKAFIEAVDIGA-RSFQLFLGNPRSWKGVRLSE--ETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDE 89 (273)
T ss_pred hHHHHHHHHcCC-CEEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHH
Confidence 356788888884 68888875432111112222 456666667788899999997421 1111 11 22334456777
Q ss_pred HHHHHHhcCCCeEEEEecC
Q 020186 141 LQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 141 ~~~~la~~~~~~lhi~HvS 159 (329)
+ .+|+..|++..++|..
T Consensus 90 i--~~A~~lGa~~vv~h~g 106 (273)
T smart00518 90 I--KRCEELGIKALVFHPG 106 (273)
T ss_pred H--HHHHHcCCCEEEEccc
Confidence 7 7899999998888874
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=87.49 E-value=8 Score=36.74 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC-CHHHHHHHHcccCCceEEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT-TMDAVKFVESCKEGFVAAT 178 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS-t~~sl~~i~~ak~~~vt~E 178 (329)
..+.++++.+++.|.++.+|+....- .. .+...+ ... -+..=.|-+|++ .++.++++++ ..+.+|
T Consensus 182 ~~~~~~~~~A~~~g~~~~~H~~E~~~-----~~---~~~~al--~~l-g~~ri~Hg~~l~~~~~~~~~l~~---~gi~v~ 247 (340)
T PRK09358 182 SKFARAFDRARDAGLRLTAHAGEAGG-----PE---SIWEAL--DEL-GAERIGHGVRAIEDPALMARLAD---RRIPLE 247 (340)
T ss_pred HHHHHHHHHHHHCCCCeEEcCCCCCc-----hh---HHHHHH--HHc-CCcccchhhhhccCHHHHHHHHH---cCCeEE
Confidence 67889999999999999999974311 01 122222 101 011113555555 4567777775 478999
Q ss_pred ecch
Q 020186 179 VTPQ 182 (329)
Q Consensus 179 t~ph 182 (329)
+||-
T Consensus 248 ~cP~ 251 (340)
T PRK09358 248 VCPT 251 (340)
T ss_pred ECCC
Confidence 9996
|
|
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.4 Score=43.10 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHhhhhhhhcCC-CCC------cccEEEEec
Q 020186 266 MGALDKLEAFTSFNGPDFYGL-PRN------TSKIKLTKI 298 (329)
Q Consensus 266 ~~~l~~~v~~~s~nPAkifgl-~~~------dADlvi~~~ 298 (329)
.+||++.|+.|+..+|+-||| ++| .|||+|||-
T Consensus 473 ~l~Le~av~rmT~~~Ae~~GL~drGlvreG~rADl~viDp 512 (579)
T COG3653 473 LLSLERAVRRMTGELAEWFGLGDRGLVREGDRADLVVIDP 512 (579)
T ss_pred cccHHHHHHHHhccHHHHhCcccccccccccccceEEEcc
Confidence 469999999999999999999 455 699999953
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=44 Score=30.52 Aligned_cols=89 Identities=10% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCc---EEEecCCC-CCC-CCh--hHHHHHHHH
Q 020186 66 DEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMP---LLVHGEVT-DPI-VDI--FDREKVFID 138 (329)
Q Consensus 66 ~el~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~---v~vHaEd~-~~~-~~~--~~~E~~av~ 138 (329)
+.+..+.+.|. -++.+|+..........+++ ..+.+.-+.+++.|+. +.+|+--. .+. .+. +......+.
T Consensus 16 ~~l~~~~~~G~-d~vEl~~~~p~~~~~~~~~~--~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 16 GAVAEAAEIGA-NAFMIFTGNPQQWKRKPLEE--LNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHcCC-CEEEEECCCCCCCcCCCCCH--HHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 44677777784 68888875221111111222 4455555566777776 67777421 111 111 223344566
Q ss_pred HHHHHHHHhcCCCeEEEEecC
Q 020186 139 TILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 139 ~~~~~~la~~~~~~lhi~HvS 159 (329)
+.+ .+|+..|++..++|..
T Consensus 93 ~~i--~~A~~lga~~vv~h~G 111 (281)
T PRK01060 93 QEI--ERCAALGAKLLVFHPG 111 (281)
T ss_pred HHH--HHHHHcCCCEEEEcCC
Confidence 666 7888889988888865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 329 | ||||
| 3mjm_A | 347 | His257ala Mutant Of Dihydroorotase From E. Coli Len | 2e-93 | ||
| 1j79_A | 347 | Molecular Structure Of Dihydroorotase: A Paradigm F | 3e-93 | ||
| 1xge_A | 347 | Dihydroorotase From Escherichia Coli: Loop Movement | 3e-93 | ||
| 3jze_A | 372 | 1.8 Angstrom Resolution Crystal Structure Of Dihydr | 5e-93 | ||
| 2z24_A | 347 | Thr110ser Dihydroorotase From E. Coli Length = 347 | 8e-93 | ||
| 2e25_A | 347 | The Crystal Structure Of The T109s Mutant Of E. Col | 8e-93 | ||
| 2z29_A | 347 | Thr109ala Dihydroorotase From E. Coli Length = 347 | 1e-92 | ||
| 2z26_A | 347 | Thr110ala Dihydroorotase From E. Coli Length = 347 | 1e-92 | ||
| 2z28_A | 347 | Thr109val Dihydroorotase From E. Coli Length = 347 | 1e-92 | ||
| 2z25_A | 347 | Thr110val Dihydroorotase From E. Coli Length = 347 | 1e-92 | ||
| 2z2a_A | 347 | Thr109gly Dihydroorotase From E. Coli Length = 347 | 2e-92 | ||
| 2z2b_A | 337 | Deletion 107-116 Mutant Of Dihydroorotase From E. C | 6e-88 | ||
| 3pnu_A | 359 | 2.4 Angstrom Crystal Structure Of Dihydroorotase (P | 2e-47 |
| >pdb|3MJM|A Chain A, His257ala Mutant Of Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|1J79|A Chain A, Molecular Structure Of Dihydroorotase: A Paradigm For Catalysis Through The Use Of A Binuclear Metal Center Length = 347 | Back alignment and structure |
|
| >pdb|1XGE|A Chain A, Dihydroorotase From Escherichia Coli: Loop Movement And Cooperativity Between Subunits Length = 347 | Back alignment and structure |
|
| >pdb|3JZE|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Dihydroorotase (Pyrc) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 372 | Back alignment and structure |
|
| >pdb|2Z24|A Chain A, Thr110ser Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|2E25|A Chain A, The Crystal Structure Of The T109s Mutant Of E. Coli Dihydroorotase Complexed With An Inhibitor 5-fluoroorotate Length = 347 | Back alignment and structure |
|
| >pdb|2Z29|A Chain A, Thr109ala Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|2Z26|A Chain A, Thr110ala Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|2Z28|A Chain A, Thr109val Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|2Z25|A Chain A, Thr110val Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|2Z2A|A Chain A, Thr109gly Dihydroorotase From E. Coli Length = 347 | Back alignment and structure |
|
| >pdb|2Z2B|A Chain A, Deletion 107-116 Mutant Of Dihydroorotase From E. Coli Length = 337 | Back alignment and structure |
|
| >pdb|3PNU|A Chain A, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc) From Campylobacter Jejuni. Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* Length = 347 | Back alignment and structure |
|---|
Score = 367 bits (942), Expect = e-127
Identities = 176/312 (56%), Positives = 213/312 (68%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
YGRAIVMPNL PP+TT AAVAYR+ IL A+PA +FTPLMT YLTD+ P+E++
Sbjct: 35 IYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFN 94
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
GV A KLYPA AT NS GVT + VLE M + MPLLVHGEVT +DIFDRE
Sbjct: 95 EGVFTAAKLYPANATANSSHGVTS-VDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDRE 153
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
FI+++++PL QRL LKVV EHITT DA +V E AAT+TPQHL+ NRN +
Sbjct: 154 ARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDGNERL-AATITPQHLMFNRNHMLV 212
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH YCLP+LKR IH+QA+ V SG + FLGTDSAPH R RKE +CGCAG +NAP
Sbjct: 213 GGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAP 272
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL YA VFEEM AL EAF S NGP FYGLP N + I+L + +V E+ + + +
Sbjct: 273 TALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTL 332
Query: 314 IPMFAGNTLEWQ 325
+P AG T+ W
Sbjct: 333 VPFLAGETVRWS 344
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} Length = 359 | Back alignment and structure |
|---|
Score = 335 bits (861), Expect = e-115
Identities = 114/314 (36%), Positives = 168/314 (53%), Gaps = 12/314 (3%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
+ A++MPNL PP+ AY+ ILKA NFTPLMTL+ + E L
Sbjct: 53 DFCAAVIMPNLIPPLCNLEDLKAYKMRILKACK-DENFTPLMTLFFKNYD---EKFLYSA 108
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLF-GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR 132
+F +KLYPAG TTNS GV+ LE M + N+PLLVHGE D + DR
Sbjct: 109 KDEIFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFV---MDR 165
Query: 133 EKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALF 192
E F I + L + P+LK+VMEHITT + ++ + + AT+T HL++ + +
Sbjct: 166 ESNFAK-IYEKLAKHFPRLKIVMEHITTKTLCELLKDYE--NLYATITLHHLIITLDDVI 222
Query: 193 QGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA 252
G + PH +C P+ KR ++A+ SG K G+DSAPH + KEC AG+++A
Sbjct: 223 GGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSA 282
Query: 253 PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKI-KLTKIPWKVPEAFSFSFG 311
PV L + A++F++ + + L+ F S N Y L KI L + W+VP + +
Sbjct: 283 PVILPVLAELFKQNSSEENLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYN 342
Query: 312 DIIPMFAGNTLEWQ 325
++P AG L++Q
Sbjct: 343 QVVPYMAGEILKFQ 356
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 38/296 (12%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80
MP + P T A++ + K + + L L + D + + GVV
Sbjct: 111 MPLNQLPATVDRASIELKFDAAKG-KLTIDAAQLGGL--VSY-NIDRLHELDEVGVV-GF 165
Query: 81 KLY--PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR--EKVF 136
K + G D + +++ E P+LVH E ++ + +
Sbjct: 166 KCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGR 225
Query: 137 IDTILQPL----------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT-- 178
+ I+R+ L ++ + H+++ + V+ V ++ T
Sbjct: 226 VTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCE 285
Query: 179 VTPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHER 237
P + VL+ + + G C P ++ +++ + + +G L +D +P
Sbjct: 286 SCPHYFVLDTDQFEEIG---TLAKCSPPIRDLENQKGMWEKLFNGEID-CLVSDHSPCPP 341
Query: 238 GRKE-----CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 288
K G AG+ + + + V + +L + N D +GL +
Sbjct: 342 EMKAGNIMKAWGGIAGLQSC-MDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQ 396
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80
MPN PP TT + + I A +N+ T+ + ++ + +V +
Sbjct: 98 MPNTNPP-TTMWERLLEKRQIGADT-AWANYGFFFGG--TNDNIDEIKRVDKH--LVPGL 151
Query: 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI 140
KL+ S G L + + E ++ + H E + I + K
Sbjct: 152 KLF-----LGSSTGNM-LVDNKETLEKIFGECDLLIATHCEKEEIIRANKEHYKAKYGND 205
Query: 141 LQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCK---EGFVAA 177
L +L ++ + H++T + + + + +
Sbjct: 206 LDIHFHPLIRSEEACYRSSAEAVELAERMNARLHILHLSTEKELSLFRNDIPTAQKRITS 265
Query: 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKF-FLGTDSAPH- 235
V HL + + G P +K+E R+A+ +AV +G + + TD APH
Sbjct: 266 EVCVHHLWFSDTDYGRLG--NRIKWNPAIKKESDREALRAAVRNG--RIDIIATDHAPHL 321
Query: 236 ----ERGRKECACGCAGIYNA-PVALSLYAK 261
E + A G + ++ L L +
Sbjct: 322 LREKEGSCLQAASGGPLVQHSLLALLELCNQ 352
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 157 HITTMDAVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 214
H++T +++ +E KE G + V P HL+ + + P L+++ R A
Sbjct: 277 HVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREV--LNSGANARVNPPLRKKEDRLA 334
Query: 215 VVSAVTSGSRKFFLGTDSAPHERGRKEC----ACGCAGIYNA-PVALSLYAK-VFEEMGA 268
++ V G TD APH+ KE G G+ A P AL LY K +
Sbjct: 335 LIEGVKRGIID-CFATDHAPHQTFEKELVEFAMPGIIGLQTALPSALELYRKGIISLKKL 393
Query: 269 LDKLEAFTSFNGPDFYGLPRNT 290
++ + N G+ T
Sbjct: 394 IEMF----TINPARIIGVDLGT 411
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 37/259 (14%), Positives = 81/259 (31%), Gaps = 40/259 (15%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79
M ++ KA + ++T M + D + +++ G+ +
Sbjct: 92 MCCPSRNDDALEGYQLWKS---KAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGIS-S 147
Query: 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR--EKVFI 137
K++ + + GV D G+ L E + + H E + + + + +
Sbjct: 148 FKIF---LSYKNFFGVDD--GEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKT 202
Query: 138 DTILQPL----------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAAT--V 179
R + H++ A+ + K V
Sbjct: 203 GPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIES 262
Query: 180 TPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERG 238
H +L++ +GG+ Y P L+ + +++ + A+ G +GTD P +
Sbjct: 263 VIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFID-TVGTDHCPFDTE 321
Query: 239 RKE--------CACGCAGI 249
+K G I
Sbjct: 322 QKLLGKEAFTAIPNGIPAI 340
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 9/140 (6%)
Query: 157 HITTMDAVKFVESCK-EGF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 214
H++T ++ V K G V A TP HL L AL P P L+ E R+A
Sbjct: 233 HLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEAL--RTFDPLFKVAPPLRGEEDREA 290
Query: 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD-- 270
++ + G+ + TD APH KE A GI + VA L
Sbjct: 291 LLEGLLDGTLD-AIATDHAPHTLAEKEKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQ 349
Query: 271 KLEAFTSFNGPDFYGLPRNT 290
+L + GLP
Sbjct: 350 RLVELFTDGPRRVLGLPPLH 369
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 72/295 (24%)
Query: 56 TLYLT-DTTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHV----LEEMV 110
L T D + A T + + + T D V L K + L V
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREV 322
Query: 111 EQNMPLLVH--GEVTDPIVDIFDR-EKVFIDTI----------LQPLIQR--LPQLKVVM 155
P + E + +D + V D + L+P R +L V
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 156 E--HITTMDAVKF-VESCKEGFVAATVTPQHLV--LNRNALFQGGLRPHNYCLPVL---- 206
HI T+ + K +V L++ +L + + +P +
Sbjct: 383 PSAHIPTILLSLIWFDVIKS-------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 207 ------KREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYA 260
+ +HR +V + + F P+ Y Y+
Sbjct: 436 KVKLENEYALHRS-IVDHY-NIPKTFDSDDLIPPYLDQ-----------Y-------FYS 475
Query: 261 KVFEEMGALDKLEAFTSFNGP--DFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
+ + ++ E T F DF L + KI+ W + + +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQL 527
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-05
Identities = 56/365 (15%), Positives = 99/365 (27%), Gaps = 146/365 (40%)
Query: 37 YRESILKALPASS---NFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATTNSQD 93
+E +++ N+ LM+ T+ P + + + +LY N
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRLY------NDNQ 124
Query: 94 GVTDLF---GKCVHVLEEMVEQNMP---LLVHG-----------EV--TDPIVDIFDREK 134
+ L + + + P +L+ G +V + + D K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-K 183
Query: 135 VF---------IDTILQPLIQRL-----PQLKVVMEHITTMDAVKF-VESCKEGFVAATV 179
+F +T+L+ L Q+L P +H +K + S +
Sbjct: 184 IFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDH---SSNIKLRIHSIQAE------ 233
Query: 180 TPQHLVLNRNALFQGGLRPHNYCLPVL-----KREIH------------RQAVVSAVTSG 222
L R L + +P+ CL VL + + R V+ S
Sbjct: 234 ------LRR--LLK--SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 223 SRKF----------------------FLGTDSA--PHERGRKECACGCAGIYNAPVALSL 258
+ +L P E P LS+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTT-----NPRRLSI 332
Query: 259 YAKVFEEMGA---------LDKLEAF--TSFNG--PD-----FYGL---PRNTSKIKLTK 297
A+ + A DKL +S N P F L P +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AH 386
Query: 298 IPWKV 302
IP +
Sbjct: 387 IPTIL 391
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 157 HITTMDAVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 214
H++T +V+ + K G V A VTP HLVL + + P+ P L+ + +A
Sbjct: 231 HVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDI--PSADPNFKMNPPLRGKEDHEA 288
Query: 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD-- 270
++ + G+ + TD APH K A GI A L + G +
Sbjct: 289 LIEGLLDGTID-MIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLE 347
Query: 271 KLEAFTSFNGPDFYGLPRNT 290
+L F + D +GL
Sbjct: 348 QLIQFLTEKPADTFGLEAGR 367
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 60/317 (18%), Positives = 96/317 (30%), Gaps = 83/317 (26%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
MPN +P + KL V
Sbjct: 88 CPMPNTRPVPDS-VEHFEA-----------------------------LQKLIDDNAQV- 116
Query: 79 AVKLYPAGATTNSQDG--VTDL----------F---GKCVH-------VLEEMVEQNMPL 116
++ P + T Q G + D F G V + E + N +
Sbjct: 117 --RVLPYASITTRQLGKELVDFPALVKEGAFAFTDDGVGVQTASMMYEGMIEAAKVNKAI 174
Query: 117 LVHGEVTDPIVD-------IFDR----------EKVFIDTILQPLIQRLPQLKVVMEHIT 159
+ H E I E V I + L+ + H++
Sbjct: 175 VAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDV--LLAEAAGCHYHVCHVS 232
Query: 160 TMDAVKFVESCKE-GF-VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVS 217
T ++V+ + K G V A VTP HL+L + + G P L+ R+A++
Sbjct: 233 TKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDI--PGNNAIYKMNPPLRSTEDREALLE 290
Query: 218 AVTSGSRKFFLGTDSAPHERGRKECACGCA--GIYNAPVALSLYAKVFEEMGALD--KLE 273
+ G+ + TD APH R K A GI + A L F + G +L
Sbjct: 291 GLLDGTID-CIATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLV 349
Query: 274 AFTSFNGPDFYGLPRNT 290
+ + + + L T
Sbjct: 350 DYLTIKPCETFNLEYGT 366
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 45/260 (17%)
Query: 21 MPNLKPPITTTAAAVAYRESILKALP-ASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79
MP PP TT A + ++ +A +F + EI+ G V
Sbjct: 93 MPITFPPTTTLDAFLEKKK---QAGQRLKVDFALYGGG--VPG-NLPEIRKMHDAGAV-G 145
Query: 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT 139
K A + D V+D G+ + +E+ ++VH E I + ++++
Sbjct: 146 FKSMMAASVPGMFDAVSD--GELFEIFQEIAACGSVIVVHAENETIIQAL--QKQIKAAG 201
Query: 140 ILQPL--------------IQRLPQL------KVVMEHITTMDAVKFVESCKEGFVAATV 179
IQR L ++++ H++ D V+ + +
Sbjct: 202 GKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHC 261
Query: 180 --TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHER 237
PQ+L + + + G P+ P ++ + + +G LG+D H
Sbjct: 262 ESGPQYLNITTDDAERIG--PYMKVAPPVRSAEMNIRLWEQLENGLID-TLGSDHGGHPV 318
Query: 238 GRKE--------CACGCAGI 249
KE G G+
Sbjct: 319 EDKEPGWKDVWKAGNGALGL 338
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 40/257 (15%)
Query: 21 MP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79
MP N PP T R+ + + ++ L D ++ GV
Sbjct: 97 MPLNSNPPTITREELDKKRQLANEK--SLVDYRFWGGL--VPGN-IDHLQDLHDGGV-IG 150
Query: 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDR--EKVFI 137
K + + T+ D + ++++ L VH E + + + E+ +
Sbjct: 151 FKAFMSECGTDDFQFSHD--ETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRL 208
Query: 138 DTILQPL----------IQRLPQL------KVVMEHITTMDAVKFVESCK-EGF-VAATV 179
++R+ + + + H+++ +K ++ K EG V+
Sbjct: 209 TVKDYSEARPIVSELEAVERILRFAQLTCCPIHICHVSSRKVLKRIKQAKGEGVNVSVET 268
Query: 180 TPQHLVLNRNALFQGGLRPHNY-CLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERG 238
P +L+ + + + G C P L+ + + + +G + +D +P
Sbjct: 269 CPHYLLFSLDEFAEIGYL---AKCAPPLRERQEVEDLWDGLMAGEID-LISSDHSPSLPQ 324
Query: 239 RKE------CACGCAGI 249
K G AG
Sbjct: 325 MKTGKTIFEVWGGIAGC 341
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 100.0 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 100.0 | |
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 99.97 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 99.89 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 99.83 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 99.75 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 99.71 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 99.6 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 99.55 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 99.49 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 99.49 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 99.48 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 99.48 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 99.47 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 99.47 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 99.42 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 99.39 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 99.38 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 99.36 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.35 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.33 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 99.31 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 99.29 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 99.11 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 98.97 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 98.95 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 98.94 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 98.92 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 98.9 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 98.85 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 98.82 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 98.82 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 98.79 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 98.79 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 98.7 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 98.66 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 98.62 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 98.58 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 98.53 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 98.38 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 98.37 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 98.31 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 98.15 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 98.12 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.08 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 98.06 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 98.04 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 97.79 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 97.77 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 97.72 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 97.46 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 97.46 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 97.46 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 97.42 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.38 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 97.38 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 97.34 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 97.34 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 97.3 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 97.3 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 97.28 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 97.26 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 97.05 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 97.02 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 97.0 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 96.86 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 96.86 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 96.85 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 96.84 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 96.81 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 96.61 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 96.53 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 96.19 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 96.13 | |
| 4dzi_A | 423 | Putative TIM-barrel metal-dependent hydrolase; ami | 95.99 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 95.97 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 95.78 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 95.77 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 94.72 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 94.29 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 93.79 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 90.95 | |
| 2qpx_A | 376 | Predicted metal-dependent hydrolase of the TIM-BA; | 89.75 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 87.97 | |
| 2gwg_A | 350 | 4-oxalomesaconate hydratase; TIM-barrel like prote | 85.92 |
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-78 Score=581.14 Aligned_cols=307 Identities=36% Similarity=0.608 Sum_probs=269.0
Q ss_pred hhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeecccc
Q 020186 9 ICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGAT 88 (329)
Q Consensus 9 ~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~~ 88 (329)
+|++||||||++||||.|++++.+.++.+++++++.+. .|||+||++++++ +.+.++|.+|.+. +++||+||+++.
T Consensus 48 aA~aGG~Ttvi~mPnt~P~~~~~~~~~~~~~~a~~~~~-~vd~~~~~~l~lt-~~~~~el~~l~~~--v~~~Kl~~aga~ 123 (359)
T 3pnu_A 48 PLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACK-DENFTPLMTLFFK-NYDEKFLYSAKDE--IFGIKLYPAGIT 123 (359)
T ss_dssp HHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHHT-TSCCEEEEEEECS-CCCHHHHHHHTTT--CSEEEECBTTSS
T ss_pred HHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHHhccCC-CceEEEeeeeEec-CCCHHHHHHHHHh--hhehhheeCCCc
Confidence 78889999999999999999999999999998876543 2899999995446 6678899999876 469999998754
Q ss_pred ccC--CCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHh-cCCCeEEEEecCCHHHHH
Q 020186 89 TNS--QDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQR-LPQLKVVMEHITTMDAVK 165 (329)
Q Consensus 89 ~~~--~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~-~~~~~lhi~HvSt~~sl~ 165 (329)
.++ +..+.|+ +.|+++|++++++|.++++||||.++ ...+|.+++.|++ .+|+ .+|+|+||+||||+++++
T Consensus 124 ~~s~~~~~~~~~-~~l~~~l~~~~~~g~~v~vHaEd~~~---i~~~E~~ai~r~~--~la~~~~g~~lhi~HvSt~~~v~ 197 (359)
T 3pnu_A 124 TNSNGGVSSFDI-EYLKPTLEAMSDLNIPLLVHGETNDF---VMDRESNFAKIYE--KLAKHFPRLKIVMEHITTKTLCE 197 (359)
T ss_dssp SSCTTSBCCCCH-HHHHHHHHHHHHTTCCEEECCCCSSC---GGGTTGGGHHHHH--HHHHHCTTSCEEECSCCSHHHHH
T ss_pred ccCcCCcccCCH-HHHHHHHHHHHHcCCEEEEecCCchH---hHHHHHHHHHHHH--HHHHHcCCCcEEEEecCcHHHHH
Confidence 333 3334476 89999999999999999999999975 3457888999987 7887 679999999999999999
Q ss_pred HHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE-EecCCCCCCcCcccccC
Q 020186 166 FVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF-LGTDSAPHERGRKECAC 244 (329)
Q Consensus 166 ~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~-i~SDHaPh~~~eK~~~~ 244 (329)
+|++| .+||||||||||+||++++..+++++++|||||||+++||++||++|++|+|| + |+||||||+.++|..++
T Consensus 198 ~I~~A--~~VtaEv~phhL~lt~~~~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id-~~iaTDHaPh~~~eK~~~~ 274 (359)
T 3pnu_A 198 LLKDY--ENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEK-VMFGSDSAPHPKDTKECCG 274 (359)
T ss_dssp HHHHC--TTEEEEECSGGGTCCHHHHHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTT-EEECCCBCCCBC------C
T ss_pred HHHhc--CCceEEEechhhEEcHHHhcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCC-EEEecCCCCCCHHHhCCCC
Confidence 99998 79999999999999999986434689999999999999999999999999999 6 99999999999999899
Q ss_pred CcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC-CcccEEEEecceeecCCccCcCCcccccCCCcEEE
Q 020186 245 GCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR-NTSKIKLTKIPWKVPEAFSFSFGDIIPMFAGNTLE 323 (329)
Q Consensus 245 ~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~-~dADlvi~~~~~~v~~~~~~s~~~~spf~~G~~l~ 323 (329)
+.+|++++++.||++|+.++++++|++++++||+||||+|||+. +.|||+|||++|+|++++++|+++||||.+|++++
T Consensus 275 g~~Gi~~~~~~L~l~~~~~~~~~~l~~lv~~~s~nPAki~gL~~~~GAdlvl~d~~~~v~~~~~~s~~~~tPf~~G~~l~ 354 (359)
T 3pnu_A 275 CAAGVFSAPVILPVLAELFKQNSSEENLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILK 354 (359)
T ss_dssp CCSCBCCGGGHHHHHHHHHHHHSCHHHHHHHHTHHHHHHHTCCCSSCCEEEEECCCEECCSCEECSSCEECCTTTTCEES
T ss_pred CCCChhhHHHHHHHHHHHHhhcCCHHHHHHHHHHhHHHHhCCCCCCCCeEEEEecCEEeCchhcccCCCccccCCCCEEE
Confidence 99999999999999998888889999999999999999999953 34899999999999999999999999999999999
Q ss_pred EEEee
Q 020186 324 WQPSL 328 (329)
Q Consensus 324 G~v~~ 328 (329)
|+|++
T Consensus 355 G~v~~ 359 (359)
T 3pnu_A 355 FQLKH 359 (359)
T ss_dssp CEECC
T ss_pred EEEeC
Confidence 99974
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-72 Score=533.91 Aligned_cols=317 Identities=55% Similarity=0.888 Sum_probs=274.4
Q ss_pred chhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccc
Q 020186 8 PICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGA 87 (329)
Q Consensus 8 ~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~ 87 (329)
.+|++||||||++||||.|++++.+.+..+.+++++.+...++|.++++++.+.+.+.++|..|.+.|++.+||+||.+.
T Consensus 29 ~aa~~gGvTtvv~mpnt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~G~~~g~K~~~~~~ 108 (347)
T 2z26_A 29 VPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANA 108 (347)
T ss_dssp HHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEEEEEECCTTCCHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHhcccCCcccEEEEEEEEeCCCCCHHHHHHHHHCCCeEEEEEeecCC
Confidence 67899999999999999999999999999888887654411456666776545444688999999999536999999876
Q ss_pred cccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHH
Q 020186 88 TTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFV 167 (329)
Q Consensus 88 ~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i 167 (329)
+++++.++.|+ ..|+++|+++++.|.++++||||.+...+...+|.+++.+.+...+++++|+|+||+|+||++++++|
T Consensus 109 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~v~vH~ed~~~~~~~~~~E~~~~~~~i~~~la~~~~~~~hi~Hvst~~~~~~i 187 (347)
T 2z26_A 109 TANSSHGVTSV-DAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYV 187 (347)
T ss_dssp TCCTTTCCSCG-GGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHHHHHTHHHHHHHSTTCCEEECSCCSHHHHHHH
T ss_pred cCCCCCccCCH-HHHHHHHHHHHHhCCEEEEEecCCccccCHHHHHHHHHHHHHHHHHHhhcCCcEEEEECCcHHHHHHH
Confidence 55555666666 89999999999999999999999862223445688888887733489999999999999999999999
Q ss_pred HcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeE-EecCCCCCCcCcccccCCc
Q 020186 168 ESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFF-LGTDSAPHERGRKECACGC 246 (329)
Q Consensus 168 ~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~-i~SDHaPh~~~eK~~~~~~ 246 (329)
++|| .+||||||||||+|+++++...++++++|||||||+++||++||++|.+|+|| + |+||||||+.++|..+++.
T Consensus 188 ~~ak-~~Vt~e~~ph~L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id-~~i~SDhaP~~~~~K~~~~g~ 265 (347)
T 2z26_A 188 RDGN-ERLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNR-VFLGTDSAPHARHRKESSCGC 265 (347)
T ss_dssp HTSC-TTEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTT-EEECCCBCCCCHHHHSSSSBC
T ss_pred HHhC-CCceEeecchHheecHHHhcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCC-eEEecCCCCCCHHHhcCCCCC
Confidence 9998 79999999999999999986334689999999999999999999999999999 6 9999999999999888888
Q ss_pred CCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCC-CcEEEEE
Q 020186 247 AGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFA-GNTLEWQ 325 (329)
Q Consensus 247 ~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~-G~~l~G~ 325 (329)
+|++|+|++||++|++++++++|++++++||.||||+|||+.+.+.|+||+++|+|++++++|+++|||| + |++++|+
T Consensus 266 ~Gi~~~e~~l~l~~~~~~~~~sl~~~v~~~s~nPAki~gl~~~kG~i~l~~~~~~v~~~~~~s~~~~sPf-~~G~~l~g~ 344 (347)
T 2z26_A 266 AGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLVPF-LAGETVRWS 344 (347)
T ss_dssp CCCCCTTTHHHHHHHHHHHTTCGGGHHHHHHTHHHHHHTCCCCCCEEEEECCCEECCSCEECSSSEECCT-TTTCEESCE
T ss_pred CCcCcHHHHHHHHHHHhhcCCCHHHHHHHHhHhHHHHhCCCCCCCeEEEEcceEEEchhhccccCCcccc-cCCcEEEeE
Confidence 9999999999999987777899999999999999999999632367888899999999999999999999 7 9999999
Q ss_pred Eee
Q 020186 326 PSL 328 (329)
Q Consensus 326 v~~ 328 (329)
|++
T Consensus 345 v~~ 347 (347)
T 2z26_A 345 VKQ 347 (347)
T ss_dssp EC-
T ss_pred EeC
Confidence 974
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-60 Score=470.57 Aligned_cols=312 Identities=14% Similarity=0.115 Sum_probs=264.8
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHH-hcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLAR-KTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~-~~G~v~~~K~ 82 (329)
-++..+|++|||||+++|||+.|+.+..+.++.+.++++ .+. +||+++++++.+.++.++++.+|. +.|+ .+||+
T Consensus 73 ~~~~~aa~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~-~~~--~d~~~~~~~~~~~~~~l~el~~l~~~~G~-~~~k~ 148 (490)
T 3dc8_A 73 ESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKST-RAN--CDYSFHMAITWWGEQVFNEMETIVKDKGI-NTFKH 148 (490)
T ss_dssp HHHHHHHHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTT-TCS--SEEEEEEECCSCSHHHHHHHHHHHHHSCC-CEEEE
T ss_pred HHHHHHHHHcCEEeecccCCCCCCcCHHHHHHHHHHHhh-ccc--ceeeeEEEEecCcHHHHHHHHHHHHhCCC-CEEEE
Confidence 356788999999999999999999888888888777665 344 899999886321122366888888 7884 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
||++. +..+.++ +.|+++|++++++|.++.+||||.+++. .+..+|.+++.+.+
T Consensus 149 ~~~~~----~~~~~~~-~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i- 222 (490)
T 3dc8_A 149 FMAYK----GALMVDD-DEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAI- 222 (490)
T ss_dssp ESCST----TTTBCCH-HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHH-
T ss_pred EecCC----CCccCCH-HHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHH-
Confidence 99652 2233344 8999999999999999999999975320 12468999999998
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCC--CCceEEcCCCCChhhHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGL--RPHNYCLPVLKREIHRQAVVSA 218 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~--~~~~k~~PPLR~~~dr~aLw~a 218 (329)
.+++.+|+|+||+|+|+++++++|+++|+ .+||||||||||+|+++++...++ ++.+|||||||+++||++||++
T Consensus 223 -~la~~~g~~lhi~HvSt~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~ 301 (490)
T 3dc8_A 223 -MIADMAGCPVYIVHTSCEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAG 301 (490)
T ss_dssp -HHHHHHTCCEEESSCCSHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHH
T ss_pred -HHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHH
Confidence 89999999999999999999999999986 899999999999999999874211 6789999999999999999999
Q ss_pred HHcCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHH--HhcCCHHHHHHHHhhhhhhhcCC-CC-C
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVF--EEMGALDKLEAFTSFNGPDFYGL-PR-N 289 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~--~~~~~l~~~v~~~s~nPAkifgl-~~-~ 289 (329)
|++|.|| +|+|||+||+.++|.. +| .++|++|+|++||++|+.. .++++++++++++|.||||+||+ ++ |
T Consensus 302 l~~G~id-~i~sDh~p~~~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G 380 (490)
T 3dc8_A 302 LASGSLQ-VVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKG 380 (490)
T ss_dssp HHHTSSC-CCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred HhcCCce-EEECCCCCCCHHHhhccCCChhhCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999 9999999999999964 45 3459999999999999753 34789999999999999999999 43 3
Q ss_pred ------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 381 ~l~~G~~ADlvv~d~~~~~~i~~~~~~s~~~~sp~-~g~~~~g~v~~ 426 (490)
T 3dc8_A 381 AILVGADADLVVWDPKRSKTISAKTQQSAIDYNVF-EGKTVTGLPRF 426 (490)
T ss_dssp CCSTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTT-TTCEEEEEEEE
T ss_pred ccCCCCcCCEEEEecCcceEechhhccccCCCCcc-cCcEEeeEEEE
Confidence 7999999 68999999999999999999 99999999875
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-56 Score=439.60 Aligned_cols=312 Identities=15% Similarity=0.154 Sum_probs=266.2
Q ss_pred ecccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
.++..++++|||||+++|| |+.|+.++.+.++.+.+++...+. +||.+++++ + ..+.+++.++.+.|+ .+||+
T Consensus 94 ~~~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~--~-~~~~~~l~~l~~~G~-~~~K~ 167 (473)
T 3e74_A 94 ETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLT--IDAAQLGGL--V-SYNIDRLHELDEVGV-VGFKC 167 (473)
T ss_dssp HHHHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCS--SEEEECEEC--C-TTCTTTHHHHHHHTC-SCEEE
T ss_pred HHHHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCe--EEEEEEeec--c-cchHHHHHHHHHcCC-CEEEE
Confidence 3567889999999999999 999999999999888777766554 899999875 3 345778999999895 69999
Q ss_pred eecccccc---CCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHH
Q 020186 83 YPAGATTN---SQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDT 139 (329)
Q Consensus 83 f~~~~~~~---~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~ 139 (329)
||++.... .+....++ +.++++++++++.|.++++||||..+.. .+..+|.+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~ 246 (473)
T 3e74_A 168 FVATCGDRGIDNDFRDVND-WQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRR 246 (473)
T ss_dssp EC------------CCCCH-HHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHH
T ss_pred eccccCCcccccccCCCCH-HHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHH
Confidence 99753210 12233354 8999999999999999999999863210 124678899999
Q ss_pred HHHHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHH
Q 020186 140 ILQPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVS 217 (329)
Q Consensus 140 ~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~ 217 (329)
++ .+++.+|+|+||+|+|+++++++|+++|+ .+|+||||||||+|+++++.. +++.++|+||||+++||++||+
T Consensus 247 ~l--~la~~~g~~lhi~Hvst~~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~--~~~~~~~~Pplr~~~~~~~L~~ 322 (473)
T 3e74_A 247 VL--YLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEE--IGTLAKCSPPIRDLENQKGMWE 322 (473)
T ss_dssp HH--HHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHH--HCGGGCCSSCCCCHHHHHHHHH
T ss_pred HH--HHHHHhCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhC--CCCcEEEeCCCCCHHHHHHHHH
Confidence 99 89999999999999999999999999986 899999999999999999874 5789999999999999999999
Q ss_pred HHHcCCCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHH-HH-hcCCHHHHHHHHhhhhhhhcCCCC-C---
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKV-FE-EMGALDKLEAFTSFNGPDFYGLPR-N--- 289 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~-~~-~~~~l~~~v~~~s~nPAkifgl~~-~--- 289 (329)
+|++|.+| +|+|||+||+.++|..+|. ++|++|+|+.+|++++. +. ++++++++++++|.||||+||+++ |
T Consensus 323 ~l~~G~~~-~i~tDh~p~~~~~k~~~f~~~~~G~~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~G~l~ 401 (473)
T 3e74_A 323 KLFNGEID-CLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIA 401 (473)
T ss_dssp HHHTTCCC-EECCCBCCCCTTTTCSCTTTSCCCBCCGGGHHHHHHHHHTTTTCCCHHHHHHHHTHHHHHHTTCTTSSCCS
T ss_pred HHhCCCCc-EEEeCCCCCCHHHcccChhhcCCCcccHHhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccC
Confidence 99999999 9999999999999987774 35999999999999963 33 478999999999999999999953 4
Q ss_pred ---cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ---TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ---dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 402 ~G~~AD~vv~d~~~~~~~~~~~~~~~~~~sp~-~g~~~~g~v~~ 444 (473)
T 3e74_A 402 PGKDADFVFIQPNSSYVLTNDDLEYRHKVSPY-VGRTIGARITK 444 (473)
T ss_dssp TTSBCCEEEEESSCCEECCGGGCCSSSCCCTT-TTCEESCEEEE
T ss_pred CCCccCEEEEeCCCCEEECHHHccccCCCCCC-CCCEEeeEEEE
Confidence 7999999 58999999999999999999 99999999975
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=421.14 Aligned_cols=306 Identities=20% Similarity=0.222 Sum_probs=262.8
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K~f 83 (329)
+++.+|+.||+||+++||++.|+.++.+.++.+.+.+++... ++|.++++++.+ .++.+.++.++.+.|+ .+|.
T Consensus 74 ~~~~~~~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~l~~~G~-~~~~-- 148 (424)
T 3gri_A 74 TGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQ--VRVLPYASITTRQLGKELVDFPALVKEGA-FAFT-- 148 (424)
T ss_dssp HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS--SEECCCEESBGGGCSSSBCCHHHHHTTTC-CCEE--
T ss_pred HHHHHHHhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCC--ceEEEEEEEecCCCcchHHHHHHHHhcCc-EEEe--
Confidence 466788999999999999999999999999988888877655 799888876422 2345667888988885 3542
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPLIQ 146 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~la 146 (329)
+.+....+. +.++++++++++.|.++++|+||.++.. .+..+|..++.+.+ .++
T Consensus 149 ------~~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~v~r~~--~la 219 (424)
T 3gri_A 149 ------DDGVGVQTA-SMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDV--LLA 219 (424)
T ss_dssp ------ECSSCCCSH-HHHHHHHHHHHHHTCCEEECCCCGGGCTTCCEESSHHHHHHTCCEECTHHHHHHHHHHH--HHH
T ss_pred ------cCCcCcCCH-HHHHHHHHHHHhcCCEEEEeCCCHHHHhhhhhhcCccchhhCCCCCCHHHHHHHHHHHH--HHH
Confidence 222233455 8899999999999999999999986431 11367889999998 899
Q ss_pred hcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCC
Q 020186 147 RLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR 224 (329)
Q Consensus 147 ~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~I 224 (329)
+.+|+|+||+|+|+++++++|+++|+ .+|++|+|||||+|+++++. .+++.+||+||||+++||++||++|.+|.|
T Consensus 220 ~~~g~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~--~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i 297 (424)
T 3gri_A 220 EAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIP--GNNAIYKMNPPLRSTEDREALLEGLLDGTI 297 (424)
T ss_dssp HHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCC--SSCGGGCCSSCCCCHHHHHHHHHHHHTTSS
T ss_pred HHhCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHh--CcCceEEEeCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999986 79999999999999999986 368999999999999999999999999999
Q ss_pred CeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCCCCC------cccEE
Q 020186 225 KFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGLPRN------TSKIK 294 (329)
Q Consensus 225 d~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl~~~------dADlv 294 (329)
| +|+|||+||+.++|..+|. ++|++|+|+.+|++++.+ . ++++++++++++|.|||++||++.| +|||+
T Consensus 298 ~-~igtDhap~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~g~l~~G~~Ad~~ 376 (424)
T 3gri_A 298 D-CIATDHAPHARDEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNLEYGTLKENGYADLT 376 (424)
T ss_dssp C-EECCCBCCCCHHHHTSCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHHHHHHHTHHHHHHTTCSCSCCCTTSBCCEE
T ss_pred e-EEEcCCCCCCHHHccCCHhHCCCCCccccccHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCcccCCCcCCEE
Confidence 9 9999999999999987764 359999999999998654 3 4689999999999999999999544 79999
Q ss_pred EE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 295 LT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 295 i~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 377 ~~d~~~~~~~~~~~~~~~~~~sp~-~g~~~~g~v~~ 411 (424)
T 3gri_A 377 IIDLDSEQEIKGEDFLSKADNTPF-IGYKVYGNPIL 411 (424)
T ss_dssp EEESSCCEECCGGGCSSSCCCCTT-TTCEESCEEEE
T ss_pred EEcCCCCEEEchhhcccccCCCCc-CCCEEeeeEEE
Confidence 99 57999999999999999999 99999999875
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=412.85 Aligned_cols=312 Identities=16% Similarity=0.127 Sum_probs=261.8
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh-cCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK-TGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~-~G~v~~~K~f 83 (329)
+++.+|++|||||+++|||+.|+.+..+.++.+.+.+...+. +||++|++++-..++..+++.++.+ .|+ .++|+|
T Consensus 76 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~ik~~ 152 (461)
T 3sfw_A 76 TGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAV--IDYGFHLMVSDANDHVLEELESVVNNEGI-TSLKVF 152 (461)
T ss_dssp HHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCS--SEEEEEEECSCCCHHHHHHHHHHHHTSCC-CEEEEE
T ss_pred HHHHHHHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcE--EEEEEEEEEeCCCHHHHHHHHHHHHhCCC-CEEEEE
Confidence 457889999999999999999998888888887777665444 8999998752112234567888888 885 699999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQP 143 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~~ 143 (329)
+.+ .+....+. +.++++++++++.|.++.+|||+.+++. .+..+|.+++.+++
T Consensus 153 ~~~----~~~~~~~~-~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~-- 225 (461)
T 3sfw_A 153 MAY----KNVLMADD-ETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAI-- 225 (461)
T ss_dssp SSS----TTTTBCCH-HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHH--
T ss_pred Eec----CCCcccCH-HHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHH--
Confidence 865 12223344 8899999999999999999999865320 12357899999998
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHHH
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
.+++.+|+|+||+|+|+++++++|+++|+ .+||||+|||||+|+++++...+ .++.+||+||||+++||++||++|+
T Consensus 226 ~la~~~g~~~hi~H~s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~Pplr~~~~~~aL~~~l~ 305 (461)
T 3sfw_A 226 ALTALADAQLYVVHVSCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSALK 305 (461)
T ss_dssp HHHHHTTCEEEECSCCSHHHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTTGGGGGCCSSCCCCTHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEEecCcHHHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCccccCCcEEEcCCCCChHHHHHHHHHHh
Confidence 89999999999999999999999999986 89999999999999999986421 3788999999999999999999999
Q ss_pred cCCCCeEEecCCCCCCcCc-cc---ccC--CcCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCC-CC-C-
Q 020186 221 SGSRKFFLGTDSAPHERGR-KE---CAC--GCAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGL-PR-N- 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~e-K~---~~~--~~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl-~~-~- 289 (329)
+|.+| +|+|||+||+.++ |. .+| ..+|++|+|+.+|++++.+ . +++++++++++++.|||++||+ ++ |
T Consensus 306 ~G~~~-~i~sD~~p~~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~ 384 (461)
T 3sfw_A 306 NGILQ-TVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGT 384 (461)
T ss_dssp TTSSC-EECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSS
T ss_pred cCCce-EEECCCCCCCchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCc
Confidence 99999 9999999999554 42 344 3459999999999998743 3 4689999999999999999999 43 3
Q ss_pred -----cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 -----TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 -----dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 385 l~~G~~Ad~~~~d~~~~~~~~~~~~~~~~~~sp~-~g~~~~~~v~~ 429 (461)
T 3sfw_A 385 IAVGSDADIVLFDPTVQRTISVETHHMNVDYNPF-EGMQVHGDVIS 429 (461)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTTTCCSSSSCCTT-TTCEEEEEEEE
T ss_pred cCCCCcCCEEEEcCCCCEEEchHHcccccCCCCC-CCCEecceEEE
Confidence 7999999 57899999999999999999 99999999975
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=409.30 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=268.4
Q ss_pred ecccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 4 ITILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
.++..+++++||||+++|| |+.|+.++.+.+..+.+.++..+. +||.+++++ + +.+.+++.++.+.|+ .+||+
T Consensus 80 ~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~-~~~~~~l~~l~~~g~-~~~~~ 153 (448)
T 3hm7_A 80 ASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSL--VDYRFWGGL--V-PGNIDHLQDLHDGGV-IGFKA 153 (448)
T ss_dssp HHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCS--SEEEEEEEC--C-TTCGGGHHHHHHTTC-SEEEE
T ss_pred HHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCe--eEEEEEEEe--c-ccCHHHHHHHHHcCC-CEEEE
Confidence 3566789999999999999 999999999999888888776655 899999875 3 345788999998885 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
|+.+...++...+ +. +.++++++.+++.|+++++|+|+..+.. .+..+|.+++.+++
T Consensus 154 ~l~~~~~~~~~~~-~~-~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~- 230 (448)
T 3hm7_A 154 FMSECGTDDFQFS-HD-ETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERIL- 230 (448)
T ss_dssp ESSSCSSSSSCCC-CH-HHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHH-
T ss_pred eeccccCCccCcC-CH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHH-
Confidence 9987433222334 44 8999999999999999999999865310 11357889999998
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
.+++.+|+|+||+|+|+++++++++++|+ .++++|||||||+|+++++.. +++.+||+||||+++++++||+++.
T Consensus 231 -~la~~~g~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~--~~~~~~~~Pplr~~~~~~~l~~~l~ 307 (448)
T 3hm7_A 231 -RFAQLTCCPIHICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE--IGYLAKCAPPLRERQEVEDLWDGLM 307 (448)
T ss_dssp -HHHHHHTCCEEECCCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHH--HCSTTCCSSCCCCHHHHHHHHHHHH
T ss_pred -HHHHHhCCCEEEEeCCCHHHHHHHHHHHhcCCCEEEEechHHHccCHHHhcC--CCCeEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999986 799999999999999999863 4789999999999999999999999
Q ss_pred cCCCCeEEecCCCCCCcCccccc-CC--cCCccchhHHHHHHHHHH--HhcCCHHHHHHHHhhhhhhhcCC-CC-C----
Q 020186 221 SGSRKFFLGTDSAPHERGRKECA-CG--CAGIYNAPVALSLYAKVF--EEMGALDKLEAFTSFNGPDFYGL-PR-N---- 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK~~~-~~--~~Gi~~~e~~lpll~~~~--~~~~~l~~~v~~~s~nPAkifgl-~~-~---- 289 (329)
+|.+| +|+|||+||+.++|..+ |. ++|++|+|+.+|++++.+ .+.+++++++++++.|||++||+ ++ |
T Consensus 308 ~g~~~-~i~tD~~p~~~~~k~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~ 386 (448)
T 3hm7_A 308 AGEID-LISSDHSPSLPQMKTGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQV 386 (448)
T ss_dssp HTCCC-EECCCBCCCCGGGGCCSSTTTSCCCBCCTTTHHHHHHHHTTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCST
T ss_pred cCCcc-EEEeCCCCCCHHHcccCCHhhCCCCCccHHHHHHHHHHHHHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccC
Confidence 99999 99999999999999754 43 459999999999998743 34789999999999999999999 33 3
Q ss_pred --cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 --TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 --dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 387 G~~Ad~~~~d~~~~~~~~~~~~~~~~~~sp~-~g~~~~g~v~~ 428 (448)
T 3hm7_A 387 GAEASFTLIDLNESYTLNASDLYYRHPISPY-VGQRFRGKVKH 428 (448)
T ss_dssp TSBCCEEEEEEEEEEECCGGGCCSSSCCCTT-TTCEEEEEEEE
T ss_pred CCcCCEEEEeCCCCEEEChHhcccccCCCCC-CCCEEEEEEEE
Confidence 7999999 67999999999999999999 99999999975
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=399.19 Aligned_cols=306 Identities=21% Similarity=0.261 Sum_probs=261.2
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K~f 83 (329)
+++.+|+.|||||+++||++.|+.++.+.++.+.+.+++.+. +++.+++.++.+ .+....++.++.+.|++ +|
T Consensus 75 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~~G~~-~~--- 148 (428)
T 3mpg_A 75 TGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAH--VNVLPYGAITVRQAGSEMTDFETLKELGAF-AF--- 148 (428)
T ss_dssp HHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS--SEEEECEESBGGGCSSSBCCHHHHHHTTCC-CE---
T ss_pred HHHHHHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCC--cEEEEEeeEecCCCcchHHHHHHHHHhCCE-EE---
Confidence 457789999999999999999999999999888888777655 788888765322 23355678888888853 44
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----------------ChhHHHHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----------------DIFDREKVFIDTILQPLIQ 146 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----------------~~~~~E~~av~~~~~~~la 146 (329)
++.+....+. +.++++++++++.|.++.+|+|+..+.. .+..+|..++.+.+ .++
T Consensus 149 -----~~~~~~~~~~-~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~--~la 220 (428)
T 3mpg_A 149 -----TDDGVGVQDA-SMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDI--LLA 220 (428)
T ss_dssp -----ECTTSCCCCH-HHHHHHHHHHHHTTCCEEECCCCGGGCTTCSEETTHHHHHTTCCEECTHHHHHHHHHHH--HHH
T ss_pred -----ECCCcCCCCH-HHHHHHHHHHHhcCCeEEEECCChhHhhhHHhhcCccchhhCcCCCCHHHHHHHHHHHH--HHH
Confidence 1222333455 8899999999999999999999875421 11357888999998 899
Q ss_pred hcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCC
Q 020186 147 RLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSR 224 (329)
Q Consensus 147 ~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~I 224 (329)
+.+|+++||+|+|+++++++++++|+ .++++|+|||||+|+++++. .+++.+||+||||++++|++||++|.+|.+
T Consensus 221 ~~~g~~~~i~H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~--~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i 298 (428)
T 3mpg_A 221 EAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIP--SADPNFKMNPPLRGKEDHEALIEGLLDGTI 298 (428)
T ss_dssp HHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCC--SSCGGGCCSSCCCCHHHHHHHHHHHHHTSS
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHhcCCCEEEEEchHHhEECHHHHh--CCCCeEEEeCCCCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999986 79999999999999999986 368899999999999999999999999999
Q ss_pred CeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCCCCC------cccEE
Q 020186 225 KFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGLPRN------TSKIK 294 (329)
Q Consensus 225 d~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl~~~------dADlv 294 (329)
| +|+|||+||+.++|..+|. +.|++|+|+.+|++++.+ . +.++++++++++|.||||+||++.| +|||+
T Consensus 299 ~-~i~tDh~p~~~~~k~~~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~g~i~~G~~Ad~~ 377 (428)
T 3mpg_A 299 D-MIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLKEGRTADIT 377 (428)
T ss_dssp C-CBCCCBCCCCTTGGGSCTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHHHHHTTTHHHHHHHTCSCSCCCTTSBCCEE
T ss_pred c-EEEcCCCCCCHHHcccCHhhCCCCceehhhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCccccCCCcCCEE
Confidence 9 9999999999999987663 459999999999998753 2 4689999999999999999999643 79999
Q ss_pred EE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 295 LT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 295 i~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|| +.+|+++.++++++++|||| +|++++|+|.+
T Consensus 378 ~~d~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~v~~ 412 (428)
T 3mpg_A 378 IIDLEQEEEIDPTTFLSKGKNTPF-AGWKCQGWPVM 412 (428)
T ss_dssp EEESSCCEECCGGGCSSSCCCCSC-TTCEECCEEEE
T ss_pred EEcCCCCEEEchhhccccCCCCCc-CCCEEeeEEEE
Confidence 99 58999999999999999999 99999999875
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-47 Score=381.92 Aligned_cols=311 Identities=12% Similarity=0.127 Sum_probs=243.4
Q ss_pred cccchhcccCccEEEECCCCC---CCCC-cHHHHHHHHHHHHh-hCCCCccEEEEEEEEeCC---CC---CH-HHHHHHH
Q 020186 5 TILPICSVSHYGRAIVMPNLK---PPIT-TTAAAVAYRESILK-ALPASSNFTPLMTLYLTD---TT---SP-DEIKLAR 72 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~---p~~~-~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~---~~---~~-~el~~l~ 72 (329)
+++.++++|||||+++||++. |..+ ..+.+....+.... .+. +|+++++.++... ++ .. +++.++.
T Consensus 80 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~ 157 (559)
T 2fty_A 80 HATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLY--CDYGLHLILFQIEKPSVEARELLDVQLQAAY 157 (559)
T ss_dssp HHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCS--SEEEEEEECCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcce--eEEEeeeeeccCcCCCchhhhhHHHHHHHHH
Confidence 456788999999999999876 4444 33333100022221 233 8999887652110 01 23 5666776
Q ss_pred -hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhH
Q 020186 73 -KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFD 131 (329)
Q Consensus 73 -~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~ 131 (329)
+.| +.++|+|+++. +..++ . +.|+++++++++.|.++.+|+|+...+. .+..
T Consensus 158 ~~~G-~~~iki~~~~~----~~~~s-~-e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~ 230 (559)
T 2fty_A 158 NDYG-VSSVKMFMTYP----GLQIS-D-YDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSI 230 (559)
T ss_dssp HHHC-CCEEEEESSST----TTBCC-H-HHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHH
T ss_pred HHCC-CCEEEEEecCC----CCcCC-H-HHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHH
Confidence 567 46999998642 22333 3 8899999999999999999999764210 1235
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhc-----------------
Q 020186 132 REKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALF----------------- 192 (329)
Q Consensus 132 ~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~----------------- 192 (329)
+|.+++.+++ .+++.+++|+||+|+|+.+++++|+++|+ .+||+|+|||||+|+++++.
T Consensus 231 ~E~~av~~~i--~la~~~g~~vhi~H~s~~~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~ 308 (559)
T 2fty_A 231 VEGEATNRAI--TLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLS 308 (559)
T ss_dssp HHHHHHHHHH--HHHHHTTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGG
T ss_pred HHHHHHHHHH--HHHHHhCCCEEEEcCCCHHHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccccCcc
Confidence 7888999998 89999999999999999999999999875 78999999999999988771
Q ss_pred --------C--CC-CCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcc----------------cccC-
Q 020186 193 --------Q--GG-LRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK----------------ECAC- 244 (329)
Q Consensus 193 --------~--~~-~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK----------------~~~~- 244 (329)
. .+ .++.+||+||||++++|++||+++++|.++ +|+|||+||+.++| ..+|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~PplR~~~~~~~l~~~l~~G~~~-~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~ 387 (559)
T 2fty_A 309 SISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFT-IVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFR 387 (559)
T ss_dssp GCSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHTTSCS-EECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGG
T ss_pred ccccccccccCccccccCcEECCCCCCHHHHHHHHHHHhcCceE-EEEeCCCCCChhhccccccccccccccccccCCHh
Confidence 1 11 257889999999999999999999999999 99999999998865 1344
Q ss_pred -CcCCccchhHHHHHHHHHH-H-hcC-CHHHHHHHHhhhhhhhcCC-CC--------CcccEEEE--ec--------cee
Q 020186 245 -GCAGIYNAPVALSLYAKVF-E-EMG-ALDKLEAFTSFNGPDFYGL-PR--------NTSKIKLT--KI--------PWK 301 (329)
Q Consensus 245 -~~~Gi~~~e~~lpll~~~~-~-~~~-~l~~~v~~~s~nPAkifgl-~~--------~dADlvi~--~~--------~~~ 301 (329)
..+|++|+|+.+|++++.+ . +++ +++++++++|.||||+||+ ++ ++|||+|| +. +|+
T Consensus 388 ~~~~G~~g~e~~l~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~ 467 (559)
T 2fty_A 388 YIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKL 467 (559)
T ss_dssp GSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSB
T ss_pred hCCCCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEE
Confidence 3469999999999998643 2 468 9999999999999999999 43 47999999 45 899
Q ss_pred ecCCccCcCCcccccCCCcEEEEEEee
Q 020186 302 VPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 302 v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
++.++++|+++|||| +|++++|+|.+
T Consensus 468 ~~~~~~~s~~~~sp~-~g~~~~g~v~~ 493 (559)
T 2fty_A 468 ITNKLMEHNCDYTPF-EGIEIKNWPRY 493 (559)
T ss_dssp CCTGGGTSSCSCCTT-TTCBCSCCEEE
T ss_pred EchHHhcccCCCCCc-cCCEecceEEE
Confidence 999999999999999 99999998864
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=354.19 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=245.3
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh-cCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK-TGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~-~G~v~~~K~f 83 (329)
+++.+|++||||||++|+.+.+.....+.++....++..... +|+++|...........+++.++.+ .| +.++|+|
T Consensus 84 ~~~~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~g~h~~~~~~~~~~~~~l~~l~~~~G-~~~~k~~ 160 (521)
T 2ftw_A 84 IGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN--CDYSLHVAITWWSEQVSREMEILVKERG-VNSFKCF 160 (521)
T ss_dssp HHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCS--SEEEEEEECCSCCHHHHHHHHHHHHHSC-CCEEEEE
T ss_pred HHHHHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCce--eeEeeEEeecCCChhHHHHHHHHHHhCC-CCEEEEE
Confidence 456788999999999986444444456666666655544333 7999987642111122456777774 67 4699999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC---------CC-----------hhHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI---------VD-----------IFDREKVFIDTILQP 143 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~---------~~-----------~~~~E~~av~~~~~~ 143 (329)
+++. +...+++ +.++++++.+++.|.++.+|+|+.... .+ ....|.+++.+.+
T Consensus 161 ~~~~---~~~~~~~--e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~-- 233 (521)
T 2ftw_A 161 MAYK---NSFMVTD--QEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAI-- 233 (521)
T ss_dssp SSCT---TTTBCCH--HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHH--
T ss_pred eccC---CCcCCCH--HHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHH--
Confidence 8642 1223333 789999999999999999999975311 01 1235667777877
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC--CCCceEEcCCCCC-hhhHHHHHHH
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG--LRPHNYCLPVLKR-EIHRQAVVSA 218 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~--~~~~~k~~PPLR~-~~dr~aLw~a 218 (329)
.+++.+++|+|++|+|+++++++|+++|+ .+++||+|||||.++..++.... .+++++|+||||+ ++++++||++
T Consensus 234 ~la~~~~~p~hi~h~ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~ 313 (521)
T 2ftw_A 234 VIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDY 313 (521)
T ss_dssp HHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHH
T ss_pred HHHHHhCCCEEEEecCcHHHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHH
Confidence 78899999999999999999999998876 78999999999999988764221 1456899999999 8899999999
Q ss_pred HHcCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCC-CC-C
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGL-PR-N 289 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl-~~-~ 289 (329)
|.+|.++ +++|||+||+..+|.. +| .+.|++|+|++++++|+.++ ++++++++++++|.||||+||+ ++ |
T Consensus 314 l~~g~~~-~~gsD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G 392 (521)
T 2ftw_A 314 LARGDLD-CVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKG 392 (521)
T ss_dssp HHHTSSC-CCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred hcCCCEE-EEEeCCCCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHHhCCCCCCC
Confidence 9999999 9999999999877753 33 23599999999999887543 3689999999999999999999 43 4
Q ss_pred ------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +..|+++.++++|+++|||| +|++++|+|.+
T Consensus 393 ~i~~G~~ADlvv~d~~~~~~i~~~~~~~~~~~~p~-~g~~~~g~v~~ 438 (521)
T 2ftw_A 393 RIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIF-EGIKVTGIAVT 438 (521)
T ss_dssp CCSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTT-TTCEEEEEEEE
T ss_pred CcCCCCcCCEEEEeCCCCEEEChHHccccCCCCCc-CCCEeeeeEEE
Confidence 7999999 56899999999999999999 99999999864
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=343.21 Aligned_cols=312 Identities=14% Similarity=0.074 Sum_probs=244.5
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh-cCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK-TGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~-~G~v~~~K~f 83 (329)
+++.+|++||||||+||+.+.+.....+.++....++..... +|+++|..+....+...+++.++.+ .| +.++|+|
T Consensus 107 ~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~g~h~~~~~~~~~~~~el~~l~~~~G-~~~~k~~ 183 (541)
T 2vr2_A 107 QGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVC--CDYSLHVAVTWWSDQVKEEMKILVQDKG-VNSFKMF 183 (541)
T ss_dssp HHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCS--SEEEEEEEECSCSHHHHHHHHHHHHTSC-CCEEEEE
T ss_pred HHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCce--EEEeeeecccCCCHHHHHHHHHHHHhCC-CCEEEEE
Confidence 456778999999999997655555556666666555543333 7999987652111223456777774 57 4699999
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC------------CC--------hhHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI------------VD--------IFDREKVFIDTILQP 143 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~------------~~--------~~~~E~~av~~~~~~ 143 (329)
+++. +...+++ +.++++++.+++.|.++.+|+|+.... .. ....|..++.+.+
T Consensus 184 ~~~~---~~~~~~~--~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~-- 256 (541)
T 2vr2_A 184 MAYK---DLYMVTD--LELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAI-- 256 (541)
T ss_dssp SSST---TTTBCCH--HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHH--
T ss_pred eccC---CccCCCH--HHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHH--
Confidence 8642 2223333 789999999999999999999985321 01 1245667777877
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC--CCCceEEcCCCCC-hhhHHHHHHH
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG--LRPHNYCLPVLKR-EIHRQAVVSA 218 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~--~~~~~k~~PPLR~-~~dr~aLw~a 218 (329)
.+++.+++|+|++|+|+++++++|+++|+ ..++||+|||||.+|..++.... .+.+++|+||||+ ++++++||++
T Consensus 257 ~la~~~~~p~~~~h~ss~~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~ 336 (541)
T 2vr2_A 257 TIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNL 336 (541)
T ss_dssp HHHHHHTCCEEEEEECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHH
T ss_pred HHHHHhCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHH
Confidence 78999999999999999999999998875 78999999999999977664211 1356799999998 7899999999
Q ss_pred HHcCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCC-CC-C
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGL-PR-N 289 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl-~~-~ 289 (329)
+.+|.++ +++|||+||+..+|.. +| .+.|++|+|+.++++|+..+ ++++++++++++|.||||+||+ ++ |
T Consensus 337 l~~g~~~-~~gtD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G 415 (541)
T 2vr2_A 337 LANDDLT-TTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKG 415 (541)
T ss_dssp HHTTSSC-CCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred HhcCCeE-EEEeCCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCC
Confidence 9999999 9999999999887753 33 23599999999999886543 3689999999999999999999 33 3
Q ss_pred ------cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 ------TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 ------dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +..|+++.+.++|+++|+|| +|++++|+|.+
T Consensus 416 ~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~p~-~g~~~~g~v~~ 461 (541)
T 2vr2_A 416 RIAVGSDADIVIWDPKGTRTISAKTHHQAVNFNIF-EGMVCHGVPLV 461 (541)
T ss_dssp CCSTTSBCCEEEEEEEEEEECCTTTCSSSCSCCTT-TTCEEEEEEEE
T ss_pred ccCCCCCCCEEEEcCCcCeEeCHHHhhcccCCCcc-CCCEEeeeEEE
Confidence 7999999 57899999999999999999 99999998864
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=337.00 Aligned_cols=306 Identities=19% Similarity=0.191 Sum_probs=251.8
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEee
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYP 84 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~ 84 (329)
++..+++.+||||+++||++.|+.++.+.++.+.+.+.+.+. +||++|+++ . +.+.+++.++.+.|. .++|+|+
T Consensus 82 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~-~~~~~~i~~~~~~g~-~g~k~~~ 155 (452)
T 2gwn_A 82 SESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAW--ANYGFFFGG--T-NDNIDEIKRVDKHLV-PGLKLFL 155 (452)
T ss_dssp HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS--SEEEECEEC--C-SSCHHHHHTCCTTSC-SCEEEES
T ss_pred HHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCc--ccEEEEEee--c-CCCHHHHHHHHHcCC-CEEEEEe
Confidence 455678899999999999999999999999888888777665 899998875 3 345777887776674 6999999
Q ss_pred ccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------C--------hhHHHHHHHHHHHH
Q 020186 85 AGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------D--------IFDREKVFIDTILQ 142 (329)
Q Consensus 85 ~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------~--------~~~~E~~av~~~~~ 142 (329)
++... +.++.+. ..++++++++ +.++.+|+|+.+.+. . +..+|.+.+.+++
T Consensus 156 ~~~~~--~~~~~~~-~~~~~~~~~~---~~~~~~h~~~~~~~~~~~~~~~~~~G~~~~~~~h~~~~~~~~~~~~l~~~~- 228 (452)
T 2gwn_A 156 GSSTG--NMLVDNK-ETLEKIFGEC---DLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAV- 228 (452)
T ss_dssp SSCCG--GGBCCCH-HHHHHHHHHC---CSCEEEECCCHHHHHHHHHHHHHHHCSCCCGGGHHHHSCHHHHHHHHHHHH-
T ss_pred ccCCC--CcccCCH-HHHHHHHHHc---CCEEEEcCCCHHHHHhHHhhhhhhcCcccchhhccccCChHHHHHHHHHHH-
Confidence 75321 2334454 6677666544 788899999753210 1 2346777888888
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHc--c-cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVES--C-KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~--a-k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+++|+|+|++|+|++++++.+++ + ++.+|++|+||||++++++++.. .|..++++||+|...++..||+++
T Consensus 229 -~la~~~g~~v~i~H~~~~~~~~~~~~~~a~~~~~v~~~~~~h~~~l~~~~~~~--~g~~~~~~P~lr~~~~~~~l~~~l 305 (452)
T 2gwn_A 229 -ELAERMNARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGR--LGNRIKWNPAIKKESDREALRAAV 305 (452)
T ss_dssp -HHHHHHTCCEEECCCCCTGGGGGSCCSSCGGGCSEEEEEEHHHHHCCGGGHHH--HGGGGCCSSCCCCHHHHHHHHHHH
T ss_pred -HHHHHhCCCEEEEeCCCHHHHHHHHHhhcccCCCeEEEEchHHhhcCHHHHhc--cCceEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999988 3 43468999999999999998863 478899999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCC-CC------
Q 020186 220 TSGSRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLP-RN------ 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~-~~------ 289 (329)
.+|.++ +++|||+|++..+|..++. .+|++++|+.+++++..+. +.+++++++++++.||||+||++ .|
T Consensus 306 ~~Gv~~-~lgTD~~~~~~~~k~~~~~~~~~g~~~~e~~~~~~~~~~~~~~ls~~~~l~~~T~~~A~~lgl~~~G~l~~G~ 384 (452)
T 2gwn_A 306 RNGRID-IIATDHAPHLLREKEGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGY 384 (452)
T ss_dssp HHSSSC-EEECCBCCCCHHHHCSCTTTSCCCCCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTBTTCSSCCTTS
T ss_pred HCCCce-EEEeCCCCCChHHhcCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHcCCCCCCcccCCC
Confidence 999999 9999999999887766653 3699999999998876443 47899999999999999999995 34
Q ss_pred cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|+ +..|.++.++++++..|+|| +|++++|+|.+
T Consensus 385 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~v~~ 424 (452)
T 2gwn_A 385 YADLVLVDPSSPHTVSADNILSLCGWSPF-EGFTFSHSVAY 424 (452)
T ss_dssp BCCEEEEETTSCEECCTTTCCSTTCCCTT-TTCEESCEEEE
T ss_pred cCCEEEEcCCCCeEECHHHccccCCCCCC-CCcEEeeeEEE
Confidence 7999999 46799999999999999999 99999998865
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=324.94 Aligned_cols=306 Identities=24% Similarity=0.237 Sum_probs=246.0
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K~f 83 (329)
+++..++.+||||+++|+++.|+.++.+.++...+.+++... +|+.+++++... .+...+++.++.+.|+ .+|+-
T Consensus 71 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~i~~- 146 (426)
T 2z00_A 71 SGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGL--ARLHPAAALTEKQEGKTLTPAGLLREAGA-VLLTD- 146 (426)
T ss_dssp HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTS--SEECCEECSBGGGCSSSBCCHHHHHHHTC-CEEEC-
T ss_pred HHHHHHHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCc--ccEEEEEEeecCCChhhHHHHHHHHHcCC-EEEEC-
Confidence 345678999999999999988888888888777776666443 677666543211 1234567777877774 35542
Q ss_pred eccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC------C-----------hhHHHHHHHHHHHHHHHH
Q 020186 84 PAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV------D-----------IFDREKVFIDTILQPLIQ 146 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~------~-----------~~~~E~~av~~~~~~~la 146 (329)
......+. +.+.++++.+++.|.++.+|+++..... + ...+|..++.+.+ .++
T Consensus 147 -------~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~e~~~~~~~~--~~a 216 (426)
T 2z00_A 147 -------DGRTNEDA-GVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDGPLADLLGLPGNPPEAEAARIARDL--EVL 216 (426)
T ss_dssp -------TTSCCCCH-HHHHHHHHHHGGGTCCEEECCCCHHHHTTCSEECSHHHHHHTCCEECHHHHHHHHHHHH--HHH
T ss_pred -------CCcCCCCH-HHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhhccCccchhcccccCChHHHHHHHHHHH--HHH
Confidence 11122344 8899999999999999999998743211 0 1235777787877 677
Q ss_pred hc------CCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHH
Q 020186 147 RL------PQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSA 218 (329)
Q Consensus 147 ~~------~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~a 218 (329)
+. +|+++||.|+++.+++++++++|+ .+|++++||||++++.+++. .+|..++++||+|++++|++||++
T Consensus 217 ~~~~~~~~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~--~~~~~~~~~~plr~~~~~~~l~~~ 294 (426)
T 2z00_A 217 RYALRRSPATPRLHVQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEALR--TFDPLFKVAPPLRGEEDREALLEG 294 (426)
T ss_dssp HHHHHHCSSCCCEEETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGG--GCCGGGCCSSCCCCHHHHHHHHHH
T ss_pred hhccccccCCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhh--ccCceEEEeCCCCCHHHHHHHHHH
Confidence 77 899999999999999999998875 78999999999999988775 257789999999999999999999
Q ss_pred HHcCCCCeEEecCCCCCCcCcccccCC--cCCccchhHHHHHHHHH-H-HhcCCHHHHHHHHhhhhhhhcCCCCC-----
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKECACG--CAGIYNAPVALSLYAKV-F-EEMGALDKLEAFTSFNGPDFYGLPRN----- 289 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~~~~--~~Gi~~~e~~lpll~~~-~-~~~~~l~~~v~~~s~nPAkifgl~~~----- 289 (329)
+.+|.++ +++|||+|++..+|..+|. +.|+.++|+.++.++.. + .+++++++++++++.||||+||+++|
T Consensus 295 l~~G~~~-~lgsD~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~T~n~A~~lgl~~G~l~~G 373 (426)
T 2z00_A 295 LLDGTLD-AIATDHAPHTLAEKEKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGLPPLHLEEG 373 (426)
T ss_dssp HHHTSSC-EECCCBCCCCTTGGGSCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHHHHHHHTCCCCCSSTT
T ss_pred HhCCCcE-EEecCCCCCCHHHccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCCcccccCC
Confidence 9999999 9999999999988876663 45999999999988763 3 34799999999999999999999644
Q ss_pred -cccEEEEe-cceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 -TSKIKLTK-IPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 -dADlvi~~-~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+||| ..|+++.++++++++|+|| +|+.++|+|.+
T Consensus 374 ~~ADlvv~d~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v~~ 413 (426)
T 2z00_A 374 AEASLVLLSPKERPVDPSAFASKARYSPW-AGWVLGGWPVL 413 (426)
T ss_dssp SBCCEEEEECCCEECCGGGCSSSCCCCTT-TTCEECCEEEE
T ss_pred CCCCEEEEeCCcEEEcHHHccccCCCCCc-CCCEEEEEEEE
Confidence 79999996 7899999999999999999 99999999875
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=325.66 Aligned_cols=311 Identities=14% Similarity=0.102 Sum_probs=245.1
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeec
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPA 85 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~ 85 (329)
++.+++++||||+++|+++.|+....+.++.+.+....... +|+++|.......++..+++.++.+.|+ .++|+|+.
T Consensus 77 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 153 (458)
T 1gkp_A 77 GSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSY--CDYTFHMAVSKFDEKTEGQLREIVADGI-SSFKIFLS 153 (458)
T ss_dssp HHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCS--SEEEEEEECCCCCTTHHHHHHHHHHTTC-CEEEEEEC
T ss_pred HHHHHHhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCce--eeEEEEEeecCCchhhHHHHHHHHHhCC-CEEEEEec
Confidence 45677899999999999887776767777766554443333 7998887542112234567888888884 58999986
Q ss_pred cccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC---------C-----------ChhHHHHHHHHHHHHHHH
Q 020186 86 GATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI---------V-----------DIFDREKVFIDTILQPLI 145 (329)
Q Consensus 86 ~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~---------~-----------~~~~~E~~av~~~~~~~l 145 (329)
+. +.... +. +.+.++++.+++.|.++.+|+|+...+ . .+..+|.+++.+.+ .+
T Consensus 154 ~~---~~~~~-~~-~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~--~~ 226 (458)
T 1gkp_A 154 YK---NFFGV-DD-GEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFA--TF 226 (458)
T ss_dssp ST---TTTBC-CH-HHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHH--HH
T ss_pred cC---CCcCC-CH-HHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHH--HH
Confidence 52 11223 33 789999999999999999999975321 0 11245667888887 78
Q ss_pred HhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 146 QRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 146 a~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
++.+|+++|++|+|+.++++.|+.+|+ ..|+||+|||||+++++++.... .+..++++||+|++.++++||+++.+|
T Consensus 227 ~~~~g~~~~~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~p~r~~~~~~~l~~~~~~G 306 (458)
T 1gkp_A 227 LETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQG 306 (458)
T ss_dssp HHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHHHHHHHTT
T ss_pred HHHhCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEecccceeeCHHHhcccccCCcceEEeCCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999988775 78999999999999988764210 144678999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHHH-h-cCCHHHHHHHHhhhhhhhcCC-CC-C----
Q 020186 223 SRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVFE-E-MGALDKLEAFTSFNGPDFYGL-PR-N---- 289 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~~-~-~~~l~~~v~~~s~nPAkifgl-~~-~---- 289 (329)
.++ +++|||+|++.++|.. ++ .+.|++|+|+.+++++...+ . .++++++++++|.||||+||+ ++ |
T Consensus 307 ~~~-~~gtD~~~~~~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~ 385 (458)
T 1gkp_A 307 FID-TVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAV 385 (458)
T ss_dssp SSC-EEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCT
T ss_pred Cee-EEECCCCCCCHHHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCC
Confidence 999 9999999998776642 22 23589999999999886443 3 489999999999999999999 43 4
Q ss_pred --cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 --TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 --dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +..|+++.++++++.+|+|| +|++++|+|.+
T Consensus 386 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v~~ 427 (458)
T 1gkp_A 386 GSDADLVVYDPQYRGTISVKTQHVNNDYNGF-EGFEIDGRPSV 427 (458)
T ss_dssp TSBCCEEEEETTCCEECCGGGCCSSSSCCTT-TTCEESCEEEE
T ss_pred CCcCCEEEEeCCCCeEEchHHcccccCCCcc-CCCEEeeEEEE
Confidence 7999999 57799999999999999999 99999998865
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=310.38 Aligned_cols=308 Identities=12% Similarity=0.095 Sum_probs=246.7
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHH---HHHHHHhcCceeEEEE
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPD---EIKLARKTGVVFAVKL 82 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~---el~~l~~~G~v~~~K~ 82 (329)
++.++++|||||+++||++.|.....+.++.+.+...+.+. +|+++|+.. . ..+.+ ++.++.+.|+ .++|+
T Consensus 76 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~-~~~~~~~~~~~~~~~~G~-~~~k~ 149 (457)
T 1nfg_A 76 ATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSA--IDYGYHIIV--L-DPTDSVIEELEVLPDLGI-TSFKV 149 (457)
T ss_dssp HHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCS--SEEEEEEEC--S-SCCHHHHHHTTTGGGGTC-CEEEE
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCc--cCEEEEEee--c-CCchhHHHHHHHHHHcCC-CEEEE
Confidence 46678899999999999888887778878777666554333 899998764 2 22333 5556667785 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC---------CC-----------hhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI---------VD-----------IFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~---------~~-----------~~~~E~~av~~~~~ 142 (329)
|+.+.. ...+++ ..+.++++.+++.|.++.+|+|+.... .+ +..+|.+++.+.+
T Consensus 150 ~~~~~~---~~~~~~--~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~- 223 (457)
T 1nfg_A 150 FMAYRG---MNMIDD--VTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARAL- 223 (457)
T ss_dssp ESSSTT---TTBCCH--HHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHH-
T ss_pred eeccCC---CCCCCH--HHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHH-
Confidence 986521 123333 778889999999999999999975321 01 1246777888888
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+..|+++|++|+++.++++.++++|+ .++++|++||++.++++++.... .+..++++||+|...+++.||+++
T Consensus 224 -~~a~~~g~~~~~~H~~~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 302 (457)
T 1nfg_A 224 -ALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNAL 302 (457)
T ss_dssp -HHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHH
T ss_pred -HHHHHHCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccccCceeEEcCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999998765 67999999999999988875311 366889999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcC-ccc---ccC--CcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCC-C-C-
Q 020186 220 TSGSRKFFLGTDSAPHERG-RKE---CAC--GCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLP-R-N- 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~-eK~---~~~--~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~-~-~- 289 (329)
.+|.++ +++|||+|++.. +|. .++ ...|++|.|+.++.++..+.. .++++++++++|.||||+||++ + |
T Consensus 303 ~~G~~~-~~gtD~~~~~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~ 381 (457)
T 1nfg_A 303 RNGVFE-TVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGT 381 (457)
T ss_dssp HTTCCS-CEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred hCCCeE-EEecCCCCCChHHhhhcccCCHhHCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCCCCCcC
Confidence 999999 999999999876 564 333 235889999899987754444 5899999999999999999995 3 4
Q ss_pred -----cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 -----TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 -----dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +..|.++.++++++..|||| +|++++|+|.+
T Consensus 382 i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~v~~ 426 (457)
T 1nfg_A 382 IAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSY-EGHKVKGVPKT 426 (457)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGGGSCSSCSCCTT-TTCEEEEEEEE
T ss_pred cCCCCccCEEEEeCCCCEEecHHHccCCCCCCCc-cCCEecceEEE
Confidence 7999999 57789999999999999999 99999998865
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=310.29 Aligned_cols=308 Identities=17% Similarity=0.191 Sum_probs=247.7
Q ss_pred ccchhcccCccEEEECC-CCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEee
Q 020186 6 ILPICSVSHYGRAIVMP-NLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYP 84 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmP-nt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~ 84 (329)
++..++.+||||+++|| ++.|...+.+.++...+.+++. . +|+.++.+. . ....+++.++.+.|+ .++|+|+
T Consensus 78 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~--~-~~~~~~~~~~~~~g~-~~i~~~~ 150 (458)
T 1gkr_A 78 DSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRL-K--VDFALYGGG--V-PGNLPEIRKMHDAGA-VGFKSMM 150 (458)
T ss_dssp HHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHC-S--SEEEEEEEC--C-TTCHHHHHHHHHTTC-CEEEEES
T ss_pred HHHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhC-c--eeEEEEecc--C-CCCHHHHHHHHHcCC-cEEEEee
Confidence 45667899999999999 8888777788787776666543 2 788887653 2 345788888888885 5999998
Q ss_pred ccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC---------CC-----------hhHHHHHHHHHHHHHH
Q 020186 85 AGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI---------VD-----------IFDREKVFIDTILQPL 144 (329)
Q Consensus 85 ~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~---------~~-----------~~~~E~~av~~~~~~~ 144 (329)
++... ......+. +.+.++++.+++.|.++.+|+|+...+ .+ ...+|..++.+.+ .
T Consensus 151 ~~~~~-~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G~~~~~~h~~~~~~~~~~~~~~~~~--~ 226 (458)
T 1gkr_A 151 AASVP-GMFDAVSD-GELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRAL--L 226 (458)
T ss_dssp SCSBT-TTBCBCCH-HHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHH--H
T ss_pred cccCC-CCcccCCH-HHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcCccchhhccccCCHHHHHHHHHHHH--H
Confidence 75321 11122344 789999999999999999999975321 01 1134566777777 7
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
+++..|+++|++|+++.+++++++++|+ .++++|+||||+.++++++.. .+..++++||+|...++++||+++.+|
T Consensus 227 la~~~g~~~h~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~--~~~~~~~~pp~r~~~~~~~l~~~~~~G 304 (458)
T 1gkr_A 227 LQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER--IGPYMKVAPPVRSAEMNIRLWEQLENG 304 (458)
T ss_dssp HHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH--HGGGGCCSSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhc--cCceEEEcCCCCCHHHHHHHHHHHhCC
Confidence 8888899999999999999999988764 579999999999999888753 367899999999999999999999999
Q ss_pred CCCeEEecCCCCCCcCccc---ccC--CcCCccchhHHHHHHHHHH-Hh-cCCHHHHHHHHhhhhhhhcCCC-C-C----
Q 020186 223 SRKFFLGTDSAPHERGRKE---CAC--GCAGIYNAPVALSLYAKVF-EE-MGALDKLEAFTSFNGPDFYGLP-R-N---- 289 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~---~~~--~~~Gi~~~e~~lpll~~~~-~~-~~~l~~~v~~~s~nPAkifgl~-~-~---- 289 (329)
.++ +++|||+|++..+|. .++ ...|+.|.|+.++.++..+ .. .++++++++++|.||||+||++ + |
T Consensus 305 ~~~-~lgtD~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~ 383 (458)
T 1gkr_A 305 LID-TLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQV 383 (458)
T ss_dssp CCC-EECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCT
T ss_pred Cce-EEEeCCCCCChHHhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCC
Confidence 999 999999999988876 333 2358999998999887633 33 6899999999999999999994 3 4
Q ss_pred --cccEEEEe--cceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 --TSKIKLTK--IPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 --dADlvi~~--~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+||| ..|+++.+++.++..|||| +|++++|+|.+
T Consensus 384 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~v~~ 425 (458)
T 1gkr_A 384 GSDADLLILDLDIDTKVDASQFRSLHKYSPF-DGMPVTGAPVL 425 (458)
T ss_dssp TSBCCEEEEESCCCEECCGGGCSSSCCCCTT-TTCEECCEEEE
T ss_pred CCcCCEEEEcCCcceEEcHHHccccCCCCCc-CCCEeeeEEEE
Confidence 79999994 5699999999999999999 99999998865
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=307.17 Aligned_cols=311 Identities=13% Similarity=0.059 Sum_probs=241.7
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHh-cCceeEEEEee
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK-TGVVFAVKLYP 84 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~-~G~v~~~K~f~ 84 (329)
++.+++.||||||++|+++.|+....+.++...+...+... +++++|...........+++.++.+ .|+ .++|+|+
T Consensus 103 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~e~~~l~~~~G~-~~i~~~~ 179 (501)
T 2vm8_A 103 GTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC--CDYSLHVDISEWHKGIQEEMEALVKDHGV-NSFLVYM 179 (501)
T ss_dssp HHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEEEECCSCSHHHHHHHHHHHHHSCC-CEEEEES
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCe--eEEEEEEEecCCCcccHHHHHHHHHhCCc-eEEEEee
Confidence 45678999999999999887777667777776665554444 7898886531001112456777763 675 5999998
Q ss_pred ccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC-----------C---------ChhHHHHHHHHHHHHHH
Q 020186 85 AGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI-----------V---------DIFDREKVFIDTILQPL 144 (329)
Q Consensus 85 ~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~-----------~---------~~~~~E~~av~~~~~~~ 144 (329)
++. ..... +. +.+.++++.+++.|.++.+|+|+...+ . .+..+|..++.+.+ .
T Consensus 180 ~~~---~~~~~-~~-~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~--~ 252 (501)
T 2vm8_A 180 AFK---DRFQL-TD-CQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAI--T 252 (501)
T ss_dssp SST---TTTBC-CH-HHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHH--H
T ss_pred ccC---CCCCC-CH-HHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHH--H
Confidence 642 12233 33 789999999999999999999974310 0 01235566788877 7
Q ss_pred HHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC--CCCceEEcCCCCCh-hhHHHHHHHH
Q 020186 145 IQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG--LRPHNYCLPVLKRE-IHRQAVVSAV 219 (329)
Q Consensus 145 la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~--~~~~~k~~PPLR~~-~dr~aLw~al 219 (329)
+++.+|+|+|++|+++++++++|+++|+ ..+++++|||||+++..++.... .+..+|++||+|.+ .++++||+++
T Consensus 253 l~~~~g~~~hi~h~~~~~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l 332 (501)
T 2vm8_A 253 IANQTNCPLYITKVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLL 332 (501)
T ss_dssp HHHHHTCCEEEEEECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHH
T ss_pred HHHHhCCcEEEEeCCcHHHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHH
Confidence 8888999999999999999999988765 67899999999999987764210 12358899999987 6899999999
Q ss_pred HcCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC-C-C-
Q 020186 220 TSGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP-R-N- 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~-~-~- 289 (329)
.+|.++ +++|||+|++..+|.. ++ .+.|+.|.|+.++.++..+. +.+++++++++++.||||+||++ + |
T Consensus 333 ~~G~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~ 411 (501)
T 2vm8_A 333 SCGDLQ-VTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGR 411 (501)
T ss_dssp HHTSSC-CCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSC
T ss_pred hcCceE-EEEecCCCCChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCCc
Confidence 999999 9999999998766532 23 23589999999999886543 36899999999999999999994 3 4
Q ss_pred -----cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 -----TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 -----dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+|| +..|.++..+++|+.+|||| +|+.++|+|.+
T Consensus 412 l~~G~~ADlvv~d~~~~~~~~~~~~~s~~~~~~~-~g~~~~~~v~~ 456 (501)
T 2vm8_A 412 IAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIF-EGMECRGSPLV 456 (501)
T ss_dssp CCTTSBCCEEEEEEEEEEECCTTTSSSSCSCCTT-TTCEEEEEEEE
T ss_pred cCCCCcCCEEEEcCCCCeeeccccccccccCCCc-cCcEeCceEEE
Confidence 7999999 46799999999999999999 99999998864
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=298.49 Aligned_cols=304 Identities=20% Similarity=0.251 Sum_probs=215.3
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEEEee
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVKLYP 84 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K~f~ 84 (329)
++..++.+||||+++|+++.|+....+.++...+.+++... +++.+++++..+ .+...+++.++.+.|++ +|+
T Consensus 123 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~g~~~~~~~~~~~~~~~~l~~~g~~-~i~--- 196 (467)
T 1xrt_A 123 GSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL--CRVLPTGTITKGRKGKEIADFYSLKEAGCV-AFT--- 196 (467)
T ss_dssp HHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS--SEEEECBCSBGGGCSSSBCCHHHHHHHTCC-CBC---
T ss_pred HHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCc--ceEEEEeeecCCCCcccHHHHHHHHHcCCE-EEE---
Confidence 45678899999999999888887888888777776666543 677665543211 12345567777776742 322
Q ss_pred ccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC-----C-----------hhHHHHHHHHHHHHHHHHhc
Q 020186 85 AGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV-----D-----------IFDREKVFIDTILQPLIQRL 148 (329)
Q Consensus 85 ~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~-----~-----------~~~~E~~av~~~~~~~la~~ 148 (329)
..+....+. +.+.++++.+++.|.++.+|+++..... + ....|..++.+.+ .+++.
T Consensus 197 -----~~~~~~~~~-e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l~~g~~~~~~g~~~~~~~~e~~~~~~~~--~~~~~ 268 (467)
T 1xrt_A 197 -----DDGSPVMDS-SVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDG--ILAQR 268 (467)
T ss_dssp -----CTTSCCCCH-HHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------CHHHHHHHHH--HHHHH
T ss_pred -----cCCCCCCCH-HHHHHHHHHHHhcCCEEEEECCCHHHHHHHHhcCccchhcccccCChHHHHHHHHHHH--HHHHH
Confidence 111122344 7899999999999999999999754211 0 1235666677766 67888
Q ss_pred CCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCe
Q 020186 149 PQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKF 226 (329)
Q Consensus 149 ~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~ 226 (329)
.++++|++|+|+.+++++++++|+ ..+++++|||||+++++++. .++++++++||+|++++++.||+++..|.++
T Consensus 269 ~g~~~hi~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~--~~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~- 345 (467)
T 1xrt_A 269 TGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVL--NSGANARVNPPLRKKEDRLALIEGVKRGIID- 345 (467)
T ss_dssp HCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC------------------------CCHHHHHHHHHHTCSC-
T ss_pred hCCCEEEEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhh--ccCceEEEcCCCCCHHHHHHHHHHHhCCceE-
Confidence 899999999999999999998865 67999999999999988764 2467899999999999999999999999999
Q ss_pred EEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEE-
Q 020186 227 FLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLT- 296 (329)
Q Consensus 227 ~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~- 296 (329)
+++|||+|++..+|.. | .+.|++++|+.+++++..... .+++++++++++.||||+||++.| +|||+|+
T Consensus 346 ~lgTD~~~~~~~~~~~-~~~~~~g~~g~e~~l~~~l~~~~~g~ls~~~al~~aT~n~A~~lgl~~G~I~~G~~ADlvvld 424 (467)
T 1xrt_A 346 CFATDHAPHQTFEKEL-VEFAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIGVDLGTLKLGSPADITIFD 424 (467)
T ss_dssp EECCCBCCCCC------------CCCCGGGHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTCSCSCCCTTSBCCEEEEE
T ss_pred EEeeCCCCCChhHhcc-cccCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHhccCHHHHhCCCcccccCCCCCCEEEEe
Confidence 9999999999887754 4 235899999999987763333 489999999999999999998643 7999999
Q ss_pred -ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 297 -KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 297 -~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+..|.++.++++++++|+|| +|+.++|+|.+
T Consensus 425 ~~~~~~i~~~~~~~~~~~~p~-~g~~~~~~V~~ 456 (467)
T 1xrt_A 425 PNKEWILNEETNLSKSRNTPL-WGKVLKGKVIY 456 (467)
T ss_dssp EEEEEECSTTTCCSSCCCCTT-TTCEEEEEEEE
T ss_pred CCCCEEEChHHccCcCCCCCc-cCCEEeEEEEE
Confidence 56799999999999999999 99999998865
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=251.24 Aligned_cols=285 Identities=11% Similarity=0.007 Sum_probs=202.5
Q ss_pred ccchhcccCccEEEE---------CCCCCCCCCcH---------HHHHHHHHHHHhhCCCCccEEEEEEEE---------
Q 020186 6 ILPICSVSHYGRAIV---------MPNLKPPITTT---------AAAVAYRESILKALPASSNFTPLMTLY--------- 58 (329)
Q Consensus 6 ~~~~Aa~GGvTtvid---------mPnt~p~~~~~---------~~l~~~~~~~~~~~~~~vd~~~~~~~~--------- 58 (329)
+...+++||+||+++ |||+.|+.+.. +.+..+.+.+++.. ..+||+++++..
T Consensus 78 ~~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~r~~~~g~ 156 (480)
T 3gip_A 78 DLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQR-PMINVAALVGHANLRLAAMRD 156 (480)
T ss_dssp TCHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSC-CSSEEEEEEEHHHHHHHHCSS
T ss_pred hHHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCC-CCceEEEccccHHHHHHhcCC
Confidence 455779999999999 89988876542 22556666655322 128999987531
Q ss_pred eC---CCCCHHHHHHHH----hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhH
Q 020186 59 LT---DTTSPDEIKLAR----KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFD 131 (329)
Q Consensus 59 ~~---~~~~~~el~~l~----~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~ 131 (329)
.. .++.++++.++. +.|+ .+||.|+.|.. +...++ +.++++++++++.|.++.+|+|+...
T Consensus 157 ~~~~~~~~~l~~m~~l~~~~~~~Ga-~g~~~~~~y~p---~~~~~~--~el~~~~~~a~~~g~~v~~H~~~~~~------ 224 (480)
T 3gip_A 157 PQAAPTAAEQQAMQDMLQAALEAGA-VGFSTGLAYQP---GAVAQA--AELEGLARVAAERRRLHTSHIRNEAD------ 224 (480)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTC-CEEEEETTSTT---GGGCCH--HHHHHHHHHHHHTTCEEEEECSCSST------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCC-cEEeecCccCC---cccCCH--HHHHHHHHHHHHcCCEEEEEecCccc------
Confidence 00 112334555555 5785 59999987631 122333 78889999999999999999998743
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEecC---------CHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCce
Q 020186 132 REKVFIDTILQPLIQRLPQLKVVMEHIT---------TMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHN 200 (329)
Q Consensus 132 ~E~~av~~~~~~~la~~~~~~lhi~HvS---------t~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~ 200 (329)
.|.+++.+.+ .+++.+|+|+||+|+| +++++++|+++|+ .+|+||+||||+.++..++.. .+..+
T Consensus 225 ~~~~a~~e~i--~la~~~g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~~~l~~--~~~~~ 300 (480)
T 3gip_A 225 GVEAAVEEVL--AIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTILIPER--AETID 300 (480)
T ss_dssp THHHHHHHHH--HHHHHHCCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCEEEEECSCSCEEEECCGGG--TTTSS
T ss_pred cHHHHHHHHH--HHHHHhCCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCceEEEeeccccCcchhhhcC--HHHHH
Confidence 4567788888 8899999999999999 5999999999986 899999999999999888763 46789
Q ss_pred EEc-------CCCCC-----------hhhHHHHHHHHHcCCCC----------------eEEecCCCCCCcCcccccCCc
Q 020186 201 YCL-------PVLKR-----------EIHRQAVVSAVTSGSRK----------------FFLGTDSAPHERGRKECACGC 246 (329)
Q Consensus 201 k~~-------PPLR~-----------~~dr~aLw~al~~G~Id----------------~~i~SDHaPh~~~eK~~~~~~ 246 (329)
|++ ||++. .++++++|+.+.+|.|+ .+++||+.|+..
T Consensus 301 ~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~gsD~~~~~~--------- 371 (480)
T 3gip_A 301 DIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDA--------- 371 (480)
T ss_dssp CCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCS---------
T ss_pred HHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHHHHHHcCCCeEEecCCcccCC---------
Confidence 999 99944 66788888666544433 045555544421
Q ss_pred CCccchhHHHHHHHHH-HH--hcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEecceeecCCccCcCCccccc
Q 020186 247 AGIYNAPVALSLYAKV-FE--EMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTKIPWKVPEAFSFSFGDIIPM 316 (329)
Q Consensus 247 ~Gi~~~e~~lpll~~~-~~--~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~~~~~v~~~~~~s~~~~spf 316 (329)
.+.+.++..+|.++.. +. +.++++++++++|.|||++||++. | +|||+|||.....+...+. ..++++
T Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~t~~~a~~~g~~~~G~l~~G~~AD~vv~d~~~~~~~~~~~--~~~~~~ 449 (480)
T 3gip_A 372 RPHPRLWGSFTRVLGRYVREARLMTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWD--EPTLAS 449 (480)
T ss_dssp SCCTHHHHHHHHHHHCCCCCTCSSCHHHHHHHHTHHHHHHHTCTTCSSCSTTSBCCEEEECTTTCBCCCCSS--STTCCC
T ss_pred CCChhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCCCCEEEEcCccccCccccc--cccccC
Confidence 1234456688888763 32 358999999999999999999953 4 7999999533333333332 335555
Q ss_pred CCC
Q 020186 317 FAG 319 (329)
Q Consensus 317 ~~G 319 (329)
.|
T Consensus 450 -~~ 451 (480)
T 3gip_A 450 -VG 451 (480)
T ss_dssp -BS
T ss_pred -CC
Confidence 44
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=204.61 Aligned_cols=268 Identities=11% Similarity=0.042 Sum_probs=181.4
Q ss_pred ccchhcccCccEEEECCC---CCCCCC-c---------------HHHHHHHHHHHHhhCCCCccEEEEEEEE--------
Q 020186 6 ILPICSVSHYGRAIVMPN---LKPPIT-T---------------TAAAVAYRESILKALPASSNFTPLMTLY-------- 58 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPn---t~p~~~-~---------------~~~l~~~~~~~~~~~~~~vd~~~~~~~~-------- 58 (329)
++.++++|||||+++||+ +.|..+ . .+.+..+.+.+++.. ..+++.++.+..
T Consensus 92 ~~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~g~~~~~~~~~~ 170 (496)
T 1rk6_A 92 DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAP-PAVNAACMVGHSTLRAAVMP 170 (496)
T ss_dssp TCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSC-CSSEEEEEEEHHHHHHHHCS
T ss_pred HHHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHhccC-CccceEEecccccceeeecc
Confidence 466889999999999985 344321 1 233445556555422 126776654310
Q ss_pred -eCCCC---CHHHHHHHH----hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChh
Q 020186 59 -LTDTT---SPDEIKLAR----KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF 130 (329)
Q Consensus 59 -~~~~~---~~~el~~l~----~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~ 130 (329)
..... ...++..+. +.|+ .+||.+..+.. + ...+. +.+.++++++++.|.++.+|+++...
T Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~G~-~~~~~~~~~~~---~-~~~~~-~el~~~~~~a~~~g~~v~~H~~~~~~----- 239 (496)
T 1rk6_A 171 DLRREATADEIQAMQALADDALASGA-IGISTGAFYPP---A-AHAST-EEIIEVCRPLITHGGVYATHMRDEGE----- 239 (496)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTC-CEEEEETTSGG---G-TTCCH-HHHHHHHTHHHHHTCEEEEECSCSST-----
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCC-cEEeeccccCC---C-CCCCH-HHHHHHHHHHHHcCCEEEEEeCCCcc-----
Confidence 01111 233444444 5675 57776653311 1 12234 77888999999999999999997632
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEec---------CCHHHHHHHHcccC-CceEEEecchhhhcchhhhcCCC-C-CC
Q 020186 131 DREKVFIDTILQPLIQRLPQLKVVMEHI---------TTMDAVKFVESCKE-GFVAATVTPQHLVLNRNALFQGG-L-RP 198 (329)
Q Consensus 131 ~~E~~av~~~~~~~la~~~~~~lhi~Hv---------St~~sl~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~-~-~~ 198 (329)
+|.+++.+.+ .+|+.+|+++||.|+ ++++.+++++++|+ .++++|+|||++..+..+++... . +.
T Consensus 240 -~~~~~l~~~~--~~a~~~g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g~v~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (496)
T 1rk6_A 240 -HIVQALEETF--RIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAGRT 316 (496)
T ss_dssp -THHHHHHHHH--HHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSSCE
T ss_pred -cHHHHHHHHH--HHHHHcCCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcCCeEEEEeccCCCCCcccHHHhcCccce
Confidence 5566777777 788899999999999 77888999998865 58999999999877654443210 1 23
Q ss_pred ceEEcCCC--------------CChhhHHHHHHHHHcCCC----------------CeEEecCCCCCCcCcccccCCcCC
Q 020186 199 HNYCLPVL--------------KREIHRQAVVSAVTSGSR----------------KFFLGTDSAPHERGRKECACGCAG 248 (329)
Q Consensus 199 ~~k~~PPL--------------R~~~dr~aLw~al~~G~I----------------d~~i~SDHaPh~~~eK~~~~~~~G 248 (329)
...++||. |...++++||+++.+|.| ..++||||+|+.. + .
T Consensus 317 ~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~~~~v~~~~~~~~~~iGTD~~~~~~--~-------~ 387 (496)
T 1rk6_A 317 LITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDE--R-------P 387 (496)
T ss_dssp EEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCS--S-------C
T ss_pred EEeccCCCcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCCHHHHHHHHcCCCEEEecCCCCCCC--C-------C
Confidence 44444554 777889999999999986 2389999998851 1 1
Q ss_pred ccchhHHHHHHHHHHH---hcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe
Q 020186 249 IYNAPVALSLYAKVFE---EMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK 297 (329)
Q Consensus 249 i~~~e~~lpll~~~~~---~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~ 297 (329)
....+..++.+++.++ +.++++++++++|.||||+||++ .| +|||+|||
T Consensus 388 ~~~~~~~~~~~l~~~v~~~~~l~~~~~l~~~T~~~A~~lgl~~~G~i~~G~~ADlv~~d 446 (496)
T 1rk6_A 388 HPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFD 446 (496)
T ss_dssp CTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCSSCCTTSBCCEEEEC
T ss_pred CchhhccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcccEEEEc
Confidence 1223446777664322 34899999999999999999996 34 79999995
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-21 Score=196.37 Aligned_cols=254 Identities=10% Similarity=0.045 Sum_probs=166.4
Q ss_pred cchhcccCccEEEEC---CC--CCCCCCc--HHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIVM---PN--LKPPITT--TAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvidm---Pn--t~p~~~~--~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
+.+|++|||||+++| |+ +.+..++ +..++.+.+..++ .. +|+.+++. +.....+++.++.+.|+ .+
T Consensus 145 ~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~~-~~--~~~~~~g~---g~~~~~~~l~e~~~~Ga-~g 217 (569)
T 1e9y_B 145 IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YS--MNLGFLAK---GNASNDASLADQIEAGA-IG 217 (569)
T ss_dssp HHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTT-SS--SEEEEEEE---CCCSCHHHHHHHHHTTC-SE
T ss_pred HHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhcc-cC--ceEEEECC---CCcCCHHHHHHHHHcCC-CE
Confidence 457899999999999 42 3333333 4556555554433 33 89888764 22345778899988896 69
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
+|++..+. . +. +.+.++++.+++.|.++.+|+++.... + .+.. .++...|.++|+.|++
T Consensus 218 ik~~~~~~-------~-t~-e~l~~~l~~A~~~g~~V~iHa~~~~e~-g-------~~~~----~la~~~g~~~hi~H~~ 276 (569)
T 1e9y_B 218 FKIHEDWG-------T-TP-SAINHALDVADKYDVQVAIHTDTLNEA-G-------CVED----TMAAIAGRTMHTFHTE 276 (569)
T ss_dssp EEECGGGC-------C-CH-HHHHHHHHHHHHTTCEEEECCCTTCSS-C-------CHHH----HHHHHTTCCEEETTTT
T ss_pred EEecCCCC-------C-CH-HHHHHHHHHHHHhCCEEEEEcCCcccc-h-------HHHH----HHHHHcCCCEEEEEcc
Confidence 99986431 2 23 789999999999999999999963211 1 0111 2344578999999999
Q ss_pred CHHH---HHHHHcccCCceEEEecchhhhcchhhhcCCCCCC---ceEEcCCC---------CChhhHHHHHHHHHc-CC
Q 020186 160 TMDA---VKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRP---HNYCLPVL---------KREIHRQAVVSAVTS-GS 223 (329)
Q Consensus 160 t~~s---l~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~---~~k~~PPL---------R~~~dr~aLw~al~~-G~ 223 (329)
+.++ .++|+.+++..+.+.+++|+|.++.+.+.. .++. ..+.+|++ |.+.++.++|+.|.+ |.
T Consensus 277 ~~~~~~~~d~I~~~~~~gv~~~~~~ptl~~t~~~~~~-~~d~~~v~h~l~~~~~ed~~~~~~rlr~~~~a~~~~L~d~Gv 355 (569)
T 1e9y_B 277 GAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAE-HMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGA 355 (569)
T ss_dssp STTSCSTTTGGGGGGSTTEEEEECGGGCSCBTTHHHH-HHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTS
T ss_pred cCcccccHHHHHHHHHcCCeeEeeCCccccccchhhh-hhchhhhhhhcCcccHHHHHHhhcchhhhHHHHHHHHHhCCC
Confidence 8765 678888776666677777777665443310 0000 02234554 234578899999995 99
Q ss_pred CCeEEecCCCCCCcC-cccc-cC-------CcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC--C---
Q 020186 224 RKFFLGTDSAPHERG-RKEC-AC-------GCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR--N--- 289 (329)
Q Consensus 224 Id~~i~SDHaPh~~~-eK~~-~~-------~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~--~--- 289 (329)
++ +++|||+|+... ++.. ++ ...|..+.+. .....+++++++++++.|||+++|++. |
T Consensus 356 ~v-~iGSD~~~~~~~g~~~~~~~~~~~~~~~~~G~l~~~~-------~~~~~ls~~~al~~~T~npA~~lGl~~~~GsIe 427 (569)
T 1e9y_B 356 FS-ITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEK-------GDNDNFRIKRYLSKYTINPAIAHGISEYVGSVE 427 (569)
T ss_dssp CC-EECCCTTSSCCTTSHHHHHHHHHHHHHHHHCSCSSCC-------SSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSC
T ss_pred EE-EEeCCCCccCcccccccchhhHHHHhHhhccCcchhh-------ccccCCCHHHHHHHHhHHHHHHcCCCCCccCcC
Confidence 99 999999988641 1000 00 0001111100 012356889999999999999999952 3
Q ss_pred ---cccEEEEe
Q 020186 290 ---TSKIKLTK 297 (329)
Q Consensus 290 ---dADlvi~~ 297 (329)
+|||+|||
T Consensus 428 ~Gk~ADlvv~d 438 (569)
T 1e9y_B 428 VGKVADLVLWS 438 (569)
T ss_dssp TTSBCCEEEEC
T ss_pred CCCCCCEEEEC
Confidence 79999995
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=164.91 Aligned_cols=259 Identities=13% Similarity=0.006 Sum_probs=154.7
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEE-eC--CC-C-------CHHHHHHHHh
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLY-LT--DT-T-------SPDEIKLARK 73 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~-~~--~~-~-------~~~el~~l~~ 73 (329)
++..+++.+||||+++|+++.+ ++.+.+. +.+++. . -++..+.... .+ +. . ..+++.++.+
T Consensus 73 ~~~~~~~~~GvTtv~d~~~~~~--~~~~~~~---~~~~~~-~--~~i~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 144 (379)
T 2ics_A 73 YPDEIGVKKGVTTVIDAGTTGA--ENIHEFY---DLAQQA-K--TNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQ 144 (379)
T ss_dssp CHHHHTGGGTEEEEEEESSSCT--TTHHHHH---HHHHTS-S--SEEEEEEESSTTTTSSSCTTSSGGGCCHHHHHHHHH
T ss_pred chhhhHhhCceeEEEcCCCCCc--cCHHHHH---HHHHhh-c--ccEEEEccccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999996543 3444333 333221 1 1221111110 01 11 1 1245666554
Q ss_pred ---cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhH-cCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcC
Q 020186 74 ---TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVE-QNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLP 149 (329)
Q Consensus 74 ---~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~-~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~ 149 (329)
.| +.++|.|+.+... ..++. +.+.++++.+++ .|.++.+|+++... ...|...+.+.-....-.+.
T Consensus 145 ~~~~~-~~~i~~~~~~~~~---~~~~~--~~~~~~~~~a~~~~g~~v~~H~~~~~~----~~~~~~~~~~~g~~~~H~~~ 214 (379)
T 2ics_A 145 ELPDF-VVGIKARMSRTVI---GDNGI--TPLELAKQIQQENQEIPLMVHIGSAPP----HLDEILALMEKGDVLTHCFN 214 (379)
T ss_dssp HCTTT-EEEEEEEESHHHH---TTCTT--HHHHHHHHHHHTTTTCCEEEEECSSSS----CHHHHHHHCCTTCEEESTTC
T ss_pred hhhCc-ceEEEEecccccc---ccchH--HHHHHHHHHHHHhcCCeEEEeCCCCcc----hHHHHHHHhhcCCeeeeccC
Confidence 35 5689999753211 01233 678889999999 99999999986421 11121111000000011133
Q ss_pred CCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC-CCCeEE
Q 020186 150 QLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG-SRKFFL 228 (329)
Q Consensus 150 ~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G-~Id~~i 228 (329)
+.+.|++|+|++++.+.++++++..+++++||++..+ +.+.++++++.| .++ ++
T Consensus 215 ~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~p~~~~~------------------------~~~~~~~~~~~G~~~~-~l 269 (379)
T 2ics_A 215 GKENGILDQATDKIKDFAWQAYNKGVVFDIGHGTDSF------------------------NFHVAETALREGMKAA-SI 269 (379)
T ss_dssp CSTTSSEETTTTEECHHHHHHHHTTCEEECCCTTTSC------------------------CHHHHHHHHHTTCCCS-BC
T ss_pred CCccchhhccCHHHHHHHHHHHHcCCEEEecCCCCCc------------------------CHHHHHHHHHcCCCcc-eE
Confidence 4556777777775555555543356788999864211 235688999999 999 99
Q ss_pred ecCCCCCCcCcccccCCcCCccchhHHHHHHHHH-HHhcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe--c
Q 020186 229 GTDSAPHERGRKECACGCAGIYNAPVALSLYAKV-FEEMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK--I 298 (329)
Q Consensus 229 ~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~-~~~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~--~ 298 (329)
+|||.|.. +. .+ + . ..++.++.. ....+++++++++++.||||+||++ +| +|||+||| .
T Consensus 270 ~TD~~~~~---~~--~~-~-~----~~~~~~l~~~~~~~ls~~~~~~~~T~n~A~~lgl~~~G~l~~G~~ADlvv~d~~~ 338 (379)
T 2ics_A 270 STDIYIRN---RE--NG-P-V----YDLATTMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQA 338 (379)
T ss_dssp CCCBCHHH---HH--SS-S-C----CCHHHHHHHHHHHTCCHHHHHHTTTHHHHHHTTCTTSSSCCTTSBCCEEEEEEEE
T ss_pred eccCcccC---CC--CC-c-H----hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCCCCCCccCEEEEeccc
Confidence 99985321 10 01 1 1 134443332 2347899999999999999999995 34 79999995 3
Q ss_pred ceeecCCccCcCCcccccCCCcEEEE----EEee
Q 020186 299 PWKVPEAFSFSFGDIIPMFAGNTLEW----QPSL 328 (329)
Q Consensus 299 ~~~v~~~~~~s~~~~spf~~G~~l~G----~v~~ 328 (329)
.|. .++|| +|+.++| +|.+
T Consensus 339 ~~~----------~~~~~-~g~~~~~~~~~~v~~ 361 (379)
T 2ics_A 339 EEK----------TLTDS-NGLTRVAKEQIRPIK 361 (379)
T ss_dssp EEE----------EEECT-TSCEEEEEEEEEEEE
T ss_pred ccc----------eeecC-CCCEEEeeeeeeeEE
Confidence 332 37899 9999999 8764
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=149.63 Aligned_cols=265 Identities=10% Similarity=0.053 Sum_probs=148.1
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCC-C---CCH-HHHHHHHhcCceeEE
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTD-T---TSP-DEIKLARKTGVVFAV 80 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~-~---~~~-~el~~l~~~G~v~~~ 80 (329)
++..++.+|+||+++|+++.|...+.+.+....+.+.+... ..+...+. +..+ . ... .++. +.+ . ..++
T Consensus 88 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~-~-~~g~ 161 (390)
T 1onw_A 88 ALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGI--SAWMLTGA-YHVPSRTITGSVEKDVA-IID-R-VIGV 161 (390)
T ss_dssp CHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTS--EEEEEEEC-SCSSCCCSSSCHHHHHH-HCT-T-EEEE
T ss_pred HHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCC--ceEEeccc-cCCCchhhhhhhcchhh-hHH-H-hhcc
Confidence 45678999999999999998887777766555555544332 22322221 1011 1 111 1121 112 1 2355
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcC------CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEE
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQN------MPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVV 154 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~------~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lh 154 (329)
|+++.. ......+. ..+.++++.++..+ .++.+|...... .+..+. .+++..+.+++
T Consensus 162 ~~~~~~----~~~~~~~~-~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~----------~~~~~~--~~~~~g~~~v~ 224 (390)
T 1onw_A 162 KCAISD----HRSAAPDV-YHLANMAAESRVGGLLGGKPGVTVFHMGDSKK----------ALQPIY--DLLENCDVPIS 224 (390)
T ss_dssp EEEESS----TTSCCCCH-HHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT----------TTHHHH--HHHHTCCCCGG
T ss_pred eeeecC----CCCCCCCH-HHHHHHHHHHhhhhhhhccCceEEEEeCCCHH----------HHHHHH--HHHhccCCceE
Confidence 666532 11122343 66777666654432 246678632211 122222 34455566554
Q ss_pred E---EecCCHHHH--HHHHcccC-CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC-CC-e
Q 020186 155 M---EHITTMDAV--KFVESCKE-GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS-RK-F 226 (329)
Q Consensus 155 i---~HvSt~~sl--~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~-Id-~ 226 (329)
+ +|++....+ +.++.+++ ..+.+ ...++|| ..+++.||++++.|. +| .
T Consensus 225 ~l~~~h~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~---~~~~~~l~~~~~~g~~~d~i 280 (390)
T 1onw_A 225 KLLPTHVNRNVPLFEQALEFARKGGTIDI---------------------TSSIDEP---VAPAEGIARAVQAGIPLARV 280 (390)
T ss_dssp GEEEECGGGSHHHHHHHHHHHHTTCCEEE---------------------ETTCCSS---SCHHHHHHHHHHTTCCGGGE
T ss_pred EeeccccccCHHHHHHHHHHHhcCCcccc---------------------ccccCCC---CcCHHHHHHHHHcCCCccce
Confidence 3 566543322 23332221 10000 0113455 368899999999997 76 6
Q ss_pred EEecCCCCCCcC-cccccCCcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 227 FLGTDSAPHERG-RKECACGCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 227 ~i~SDHaPh~~~-eK~~~~~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
+++|||.|.... .+.......|+.+++++++.++..+ ...++++++++++|.||||+||+++ | +|||+|||
T Consensus 281 ~l~TD~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~npA~~~gl~~~G~i~~G~~ADlvv~d 360 (390)
T 1onw_A 281 TLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMT 360 (390)
T ss_dssp EEECCBTCC-------------CCCCSHHHHHHHHHHHHHHCCCHHHHHGGGTHHHHHHTTCTTCSSCCTTSBCCEEEEC
T ss_pred EEEccCCCCCcccCCccccccccCCCHHHHHHHHHHHHHHcCCCHHHHHHHHhHHHHHHhCCCCCcccCCCCcCCEEEEc
Confidence 899999865321 1111112347888888999887655 3478999999999999999999963 4 79999997
Q ss_pred cceeecCCccCcCCcccccCCCc
Q 020186 298 IPWKVPEAFSFSFGDIIPMFAGN 320 (329)
Q Consensus 298 ~~~~v~~~~~~s~~~~spf~~G~ 320 (329)
..|+|. ...+++++..- +|+
T Consensus 361 ~~~~v~--~v~~~G~~v~~-~g~ 380 (390)
T 1onw_A 361 PELRIE--QVYARGKLMVK-DGK 380 (390)
T ss_dssp TTCCEE--EEEETTEEEEE-TTE
T ss_pred CCCcEE--EEEECCEEEEE-CCe
Confidence 667764 34455555443 543
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=132.64 Aligned_cols=246 Identities=11% Similarity=0.073 Sum_probs=145.6
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEE-eC--C-----C------CCHHHHH
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLY-LT--D-----T------TSPDEIK 69 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~-~~--~-----~------~~~~el~ 69 (329)
.+...+++.+||||++|||++.| ++.+.+. +...+... ..+..+.... .+ . + ...+++.
T Consensus 89 ~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~---~~~~~~~~--~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~~ 161 (417)
T 2ogj_A 89 IRPSECGAERGVTTLVDAGSAGE--ANFHGFR---EYIIEPSR--ERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRIL 161 (417)
T ss_dssp CCGGGTSGGGTEEEEEEESSCCS--TTHHHHH---HHTTTTCS--SEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHHH
T ss_pred CCHHHHHHhCCcCeEEeCCcCCC--cCHHHHH---HHHhhccc--cCeEEEeccccCcCCCCCCcccccchhhcCHHHHH
Confidence 45667889999999999997655 3443222 21222111 1111111110 01 1 0 0124555
Q ss_pred HHHhc--CceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHh
Q 020186 70 LARKT--GVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQR 147 (329)
Q Consensus 70 ~l~~~--G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~ 147 (329)
++.+. +.+.++|+|+..... ..++. ..+.++++.+++.|.++.+|+++.... ...... .+.
T Consensus 162 ~~~~~~~~~~~~ik~~~~~~~~---~~~~~--~~l~~~~~~a~~~g~~v~~H~~~~~~~----------~~~~~~-~l~- 224 (417)
T 2ogj_A 162 ECYAENSEHIVGLKVRASHVIT---GSWGV--TPVKLGKKIAKILKVPMMVHVGEPPAL----------YDEVLE-ILG- 224 (417)
T ss_dssp HHHHTCTTTEEEEEEEESHHHH---TTCTT--HHHHHHHHHHHHHTCCEEEEECSSSSC----------HHHHHH-HCC-
T ss_pred HHHHhCCCceEEEEEEecCCcc---ccccH--HHHHHHHHHHHHcCCcEEEEcCCCccc----------HHHHHH-Hhc-
Confidence 55543 235689999863211 11233 678889999999999999999864320 111110 111
Q ss_pred cCCCeEEEEec----------CCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHH
Q 020186 148 LPQLKVVMEHI----------TTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVS 217 (329)
Q Consensus 148 ~~~~~lhi~Hv----------St~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~ 217 (329)
.| ..+.|. +++...+.++++++..+.+++||++. . ..+..+|+
T Consensus 225 -~g--~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v~~~~~~~--------------~----------~~~~~~~~ 277 (417)
T 2ogj_A 225 -PG--DVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGA--------------S----------FSFKVAEA 277 (417)
T ss_dssp -TT--CEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEEECCBCSS--------------S----------CCHHHHHH
T ss_pred -CC--CEEEeccCCCccchhccCHHHHHHHHHHHhcCcEEEecCCCc--------------c----------ccchHHHH
Confidence 12 345553 34556677777655446667766421 0 13567999
Q ss_pred HHHcC-CCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHH-HHhcCCHHHHHHHHhhhhhhhcCCC-CC-----
Q 020186 218 AVTSG-SRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKV-FEEMGALDKLEAFTSFNGPDFYGLP-RN----- 289 (329)
Q Consensus 218 al~~G-~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~-~~~~~~l~~~v~~~s~nPAkifgl~-~~----- 289 (329)
+++.| ..+ +++|||. ++. +. + + +. .++.++.. ....+++++++++++.||||+||++ .|
T Consensus 278 ~~~~G~~~~-~lgtD~~-~~~--~~---g-~-~~----~l~~~~~~~~~~~l~~~~al~~~T~n~A~~lgl~~~G~l~~G 344 (417)
T 2ogj_A 278 AIARGLLPF-SISTDLH-GHS--MN---F-P-VW----DLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVG 344 (417)
T ss_dssp HHHTTCCCS-BCCBCBS-TTT--TT---T-T-CC----CHHHHHHHHHHTTCCHHHHHHTTTHHHHHHTTCCCSSTTSTT
T ss_pred HHHcCCCce-EEEcCCC-CCc--cC---C-C-hh----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 99999 999 9999997 631 11 1 1 11 34444432 3356899999999999999999996 34
Q ss_pred -cccEEEEe--cceeecCCccCcCCcccccCCCcEEEE
Q 020186 290 -TSKIKLTK--IPWKVPEAFSFSFGDIIPMFAGNTLEW 324 (329)
Q Consensus 290 -dADlvi~~--~~~~v~~~~~~s~~~~spf~~G~~l~G 324 (329)
+|||+||| ..|. .+++| .|+.++|
T Consensus 345 ~~ADlvv~d~~~~~~----------~~~~~-~g~~~~~ 371 (417)
T 2ogj_A 345 QRADFTVFDLVDADL----------EATDS-NGDVSRL 371 (417)
T ss_dssp SBCEEEEEEEEEEEE----------EEECT-TSCEEEE
T ss_pred CcccEEEEecccCCc----------eecCC-CCceEec
Confidence 79999995 3332 35678 8888887
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-15 Score=144.21 Aligned_cols=251 Identities=8% Similarity=0.015 Sum_probs=142.1
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhC----CCCccEEEEEEE-EeCC---C---------CCHHH
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKAL----PASSNFTPLMTL-YLTD---T---------TSPDE 67 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~----~~~vd~~~~~~~-~~~~---~---------~~~~e 67 (329)
+++.+++.||||||+|||++.|+....+.++.+.+..++.. . ...+++|... +... + ...+.
T Consensus 82 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 160 (396)
T 2vhl_A 82 IMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLG-AELLGIHLEGPFVSPKRAGAQPKEWIRPSDVEL 160 (396)
T ss_dssp HHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSS-SEEEEEEEECSSSCGGGCTTSCGGGCCCCCHHH
T ss_pred HHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccc-cceEEEeeecCccCccccCCCCHHHccCCCHHH
Confidence 45778999999999999988765433334555555443311 1 1356665431 0000 0 02344
Q ss_pred HHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEE-ecCCCCCCCChhHHHHHHHHHHHHHHHH
Q 020186 68 IKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLV-HGEVTDPIVDIFDREKVFIDTILQPLIQ 146 (329)
Q Consensus 68 l~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~v-HaEd~~~~~~~~~~E~~av~~~~~~~la 146 (329)
+.++.+.+. -..|++... . .+ ..+.+..+.+++.|.++.+ |+.... . .+ ..+
T Consensus 161 ~~~~~~~~~-~~ik~~~~~---p-----~~--~~~~~~~~~a~~~g~~v~~gH~~~~~-------~---~~------~~a 213 (396)
T 2vhl_A 161 FKKWQQEAG-GLIKIVTLA---P-----EE--DQHFELIRHLKDESIIASMGHTDADS-------A---LL------SDA 213 (396)
T ss_dssp HHHHHHHTT-TCEEEEEEC---G-----GG--SGGGHHHHHHHHTTCEEEECSBCCCH-------H---HH------HHH
T ss_pred HHHHHHhcC-CcceEEEEC---C-----CC--CCHHHHHHHHHHCCCEEeecccCCCH-------H---HH------HHH
Confidence 566655431 123544311 0 01 1122456677888888877 876320 1 11 123
Q ss_pred hcCCCeEEEEecCCHHHHHHHHcccC----------CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHH
Q 020186 147 RLPQLKVVMEHITTMDAVKFVESCKE----------GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVV 216 (329)
Q Consensus 147 ~~~~~~lhi~HvSt~~sl~~i~~ak~----------~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw 216 (329)
...|++ ||+|+++..+. ++ +|+ .++++|+++|++.++.+++. ..++++||.|.....+.+|
T Consensus 214 ~~~G~~-~i~H~~~~~~~--~~-~~~~G~~~~~~~~~~~~~e~~~h~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~ 284 (396)
T 2vhl_A 214 AKAGAS-HMTHLYNAMSP--FH-HREPGVIGTALAHDGFVTELIADGIHSHPLAAK-----LAFLAKGSSKLILITDSMR 284 (396)
T ss_dssp HHTTCC-EESSTTSSBCC--CC-SSSCHHHHHHHHCTTCEEEEECSSSSSCHHHHH-----HHHHHHCTTSEEEECCBCT
T ss_pred HHcCCC-EeEeCCccCcc--cc-cCCCCchhhhhcCCCcEEEEcCCccccCHHHHH-----HHHhhcCCccEEEECcChh
Confidence 346777 89999875432 11 121 24799999999999987764 1344445544333333344
Q ss_pred -HHHHcCCCCeEEecCCCCCCcCcccccC--CcCCccchhHHHHHHHHH-HH-hcCCHHHHHHHHhhhhhhhcCCC--CC
Q 020186 217 -SAVTSGSRKFFLGTDSAPHERGRKECAC--GCAGIYNAPVALSLYAKV-FE-EMGALDKLEAFTSFNGPDFYGLP--RN 289 (329)
Q Consensus 217 -~al~~G~Id~~i~SDHaPh~~~eK~~~~--~~~Gi~~~e~~lpll~~~-~~-~~~~l~~~v~~~s~nPAkifgl~--~~ 289 (329)
.++.+|.++ . +|+....|...+ ...|.+|.+..++..+.. +. ..++++++++++|.||||+||++ .|
T Consensus 285 ~~g~~~~~~~-~-----~~~~~~~~~g~~~~~d~~~~g~~~~l~~~l~~~~~~~~~~~~~~l~~aT~~~A~~lgl~~~~G 358 (396)
T 2vhl_A 285 AKGLKDGVYE-F-----GGQSVTVRGRTALLSDGTLAGSILKMNEGARHMREFTNCSWTDIANITSENAAKQLGIFDRKG 358 (396)
T ss_dssp TTTSCSEEEE-E-----TTEEEEEETTEEECTTSCBCSBCCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHHTCTTTSS
T ss_pred hcCCCCceEE-E-----CCeEEEEECCEEEeCCCcccccccCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCc
Confidence 334444443 2 355444443211 113555555567765543 33 36899999999999999999995 24
Q ss_pred ------cccEEEEec
Q 020186 290 ------TSKIKLTKI 298 (329)
Q Consensus 290 ------dADlvi~~~ 298 (329)
+|||+|||.
T Consensus 359 ~i~~G~~ADlvv~d~ 373 (396)
T 2vhl_A 359 SVTVGKDADLVIVSS 373 (396)
T ss_dssp SCCTTSBCCEEEECT
T ss_pred eeCCCCcCCEEEECC
Confidence 799999954
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-12 Score=122.69 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=134.2
Q ss_pred ccchhcccCccEEEECCC----CCCCCCcHHHHH--HHHHHHHhhCCCCccEEEEEEE-EeCCCCCHHHHHHHHhcCcee
Q 020186 6 ILPICSVSHYGRAIVMPN----LKPPITTTAAAV--AYRESILKALPASSNFTPLMTL-YLTDTTSPDEIKLARKTGVVF 78 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPn----t~p~~~~~~~l~--~~~~~~~~~~~~~vd~~~~~~~-~~~~~~~~~el~~l~~~G~v~ 78 (329)
++..++++||||+++|+| +.| .+.+.++ ...+..........-+.++.+. .+..+...+++.++.+.|. .
T Consensus 84 ~~~~~l~~GvTtv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~ 160 (386)
T 2vun_A 84 FISSALHGGVTTMISAGSPHFPGRP--KDAAGTKALAITLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGV-W 160 (386)
T ss_dssp HHHHHHTTTEEEEEECCCTTSTTCC--CSHHHHHHHHHHHHHHHHHCCGGGCEEECCEECCCTTCCHHHHHHHHHTTC-C
T ss_pred HHHHHHhCCceEEEeccccccCCCh--hhHHHHHHHHHHhhcccccccccceeeccCcccccCCcCHHHHHHHHHhCC-C
Confidence 678899999999999986 233 3443343 2111111100100011122110 0122334577888888874 5
Q ss_pred EEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 020186 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 79 ~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv 158 (329)
.+|+++.. .+.+. +.+.++++.+++.|.++.+|+++....... .| .+.. +...|++ .|.|.
T Consensus 161 ~ik~~~~~-------~~~~~-~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~--~~--~i~~------~~~~G~~-~i~H~ 221 (386)
T 2vun_A 161 IVGEVGLG-------TIKNP-EDAAPMVEWAHKHGFKVQMHTGGTSIPGSS--TV--TADD------VIKTKPD-VVSHI 221 (386)
T ss_dssp EEEEETSS-------SCCSH-HHHHHHHHHHHHTTCEEEEECSCCSCSTTC--SC--CHHH------HHHHCCS-EEETT
T ss_pred eEEEeecC-------CCCCH-HHHHHHHHHHHHCCCeEEEecCCccccccC--HH--HHHH------HHHcCCC-EEEEc
Confidence 88988531 12244 789999999999999999999854321000 00 1221 1123666 58997
Q ss_pred CC------HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC--CCeEEec
Q 020186 159 TT------MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS--RKFFLGT 230 (329)
Q Consensus 159 St------~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~--Id~~i~S 230 (329)
++ .+.++.+++.. ..+ -.+++ . + ....+++.+|++++.|. .. +++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~g-~~v--l~~~~---------~----g---------~~~~~~~~~~~~~~~g~~d~v-~lgT 275 (386)
T 2vun_A 222 NGGPTAISVQEVDRIMDET-DFA--MEIVQ---------C----G---------NPKIADYVARRAAEKGQLGRV-IFGN 275 (386)
T ss_dssp TCSSSCCCHHHHHHHHHHC-CCE--EEEES---------S----S---------CHHHHHHHHHHHHHHTCGGGE-EEEC
T ss_pred cCCCCCCCHHHHHHHHHcC-CeE--EEecc---------C----C---------cccccHHHHHHHHHcCCCcee-EEec
Confidence 65 45555444321 323 11111 0 1 03556788999999998 66 8999
Q ss_pred CCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 231 DSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 231 DHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
|| |+.. +..+.|....|.. + .....+++++++++++.||||+||+..| +|||+|||
T Consensus 276 D~-p~~~-----~~~~~g~~~~~~~--~---~~~~~ls~~~~~~~~T~n~A~~lgl~~G~i~~G~~ADlvv~d 337 (386)
T 2vun_A 276 DA-PSGT-----GLIPLGILRNMCQ--I---ASMSDIDPEVAVCMATGNSTAVYGLNTGVIAPGKEADLIIMD 337 (386)
T ss_dssp CB-SBTT-----BBCTTHHHHHHHH--H---HHHSCCCHHHHHHHHTHHHHHHHTCSCSSCSTTSBCCEEEEE
T ss_pred CC-CCCC-----CCCcchhHHHHHH--H---HhhcCCCHHHHHHHHhHHHHHHcCCCceeeCCCCeeCEEEEC
Confidence 99 5311 1111233222221 1 1234789999999999999999998323 79999994
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=134.54 Aligned_cols=261 Identities=9% Similarity=-0.121 Sum_probs=146.8
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCC--C----CC----HHHHHHHHh--
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTD--T----TS----PDEIKLARK-- 73 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~--~----~~----~~el~~l~~-- 73 (329)
++..++.+||||+++|+++. ++.++...+.+++.. +++.+...+ ... . +. ..+..++.+
T Consensus 123 ~~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~~~~g---~r~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (475)
T 2ood_A 123 FLDALLAAGTTTCQAFTSSS-----PVATEELFEEASRRN---MRVIAGLTG-IDRNAPAEFIDTPENFYRDSKRLIAQY 193 (475)
T ss_dssp HHHHHHHTTEEEEEEECCSS-----HHHHHHHHHHHHHHT---CCEEECCEE-CCSSSCTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCceEEEEecccC-----chhHHHHHHHHHHcC---CeEEEEeee-cccCCCcccccCHHHHHHHHHHHHHHh
Confidence 46688999999999998643 234445545444432 343211111 110 1 11 122344443
Q ss_pred --cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHc-CCcEEEecCCCCCCCChhHHHHHHHHH-------HHHH
Q 020186 74 --TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQ-NMPLLVHGEVTDPIVDIFDREKVFIDT-------ILQP 143 (329)
Q Consensus 74 --~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~-~~~v~vHaEd~~~~~~~~~~E~~av~~-------~~~~ 143 (329)
.|. +|++++.. .....+. +.+.++++.+++. |.++.+|+.... .|.....+ .+
T Consensus 194 ~~~~~---~~~~~~~~----~~~~~~~-e~l~~~~~~a~~~~g~~v~~H~~e~~-------~~~~~~~~~~g~~~~~~-- 256 (475)
T 2ood_A 194 HDKGR---NLYAITPR----FAFGASP-ELLKACQRLKHEHPDCWVNTHISENP-------AECSGVLVEHPDCQDYL-- 256 (475)
T ss_dssp TTBTT---EEEEEEEC----BGGGCCH-HHHHHHHHHHHHCTTSEEEEECSCCH-------HHHHHHHHHCTTCSSHH--
T ss_pred ccCCc---eEEEEecc----ccCcCCH-HHHHHHHHHHHhCCCCcEEEeeCCCh-------HHHHHHHHHcCCCccHH--
Confidence 342 34443221 1111233 7889999999999 999999997431 12222111 22
Q ss_pred HHHhc---CCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHH
Q 020186 144 LIQRL---PQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSA 218 (329)
Q Consensus 144 ~la~~---~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~a 218 (329)
.+.+. .+.+..+.|.. +.+.++.+++ ..+++++||++-. .+ + ...||+ +++
T Consensus 257 ~~~~~~g~~~~~~~i~H~~~~~~~~i~~~~~---~g~~~~~~P~~~~----~l-----~---~~~~~~---------~~~ 312 (475)
T 2ood_A 257 GVYEKFDLVGPKFSGGHGVYLSNNEFRRMSK---KGAAVVFCPCSNL----FL-----G---SGLFRL---------GRA 312 (475)
T ss_dssp HHHHTTTCCSTTEEEECCTTCCHHHHHHHHH---HTCEEEECHHHHH----HT-----T---CCCCCH---------HHH
T ss_pred HHHHHcCCCCCCcEEEEeecCCHHHHHHHHH---cCCEEEEChhhhh----hc-----c---cCcCCH---------HHH
Confidence 22232 45676666655 4566666654 3578899998632 11 1 124554 477
Q ss_pred HHcCCC--CeEEecCCCCCCcCcccccCCc--CCccchhHHHHHHHH------------HHHhcCCHHHHHHHHhhhhhh
Q 020186 219 VTSGSR--KFFLGTDSAPHERGRKECACGC--AGIYNAPVALSLYAK------------VFEEMGALDKLEAFTSFNGPD 282 (329)
Q Consensus 219 l~~G~I--d~~i~SDHaPh~~~eK~~~~~~--~Gi~~~e~~lpll~~------------~~~~~~~l~~~v~~~s~nPAk 282 (329)
+..|.+ + +++|||+|++... ++.. .++ .++..+|+++. .....+++++++++++.||||
T Consensus 313 ~~~Gv~~~~-~lgTD~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~ 387 (475)
T 2ood_A 313 TDPEHRVKM-SFGTDVGGGNRFS---MISVLDDAY-KVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAE 387 (475)
T ss_dssp TCTTSCCEE-EECCCBTTBSCCC---HHHHHHHHH-HHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHH
T ss_pred HhCCCCCcE-EEEccCCCCCCcC---HHHHHHHHH-HHhcccchhccCCcccccccccccccCCCCHHHHHHHHHHHHHH
Confidence 889999 9 9999998753211 0000 000 11111111110 112478999999999999999
Q ss_pred hcCCCC--C------cccEEEEe--cceeecCCccC------c----CCcccccCCCcEE
Q 020186 283 FYGLPR--N------TSKIKLTK--IPWKVPEAFSF------S----FGDIIPMFAGNTL 322 (329)
Q Consensus 283 ifgl~~--~------dADlvi~~--~~~~v~~~~~~------s----~~~~spf~~G~~l 322 (329)
+||++. | +|||+|+| ..|.++.++++ | ++.|+|| +|+.+
T Consensus 388 ~lgl~~~~GsL~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~s~~~~~~~~~p~-~~~~~ 446 (475)
T 2ood_A 388 GLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASML-FAVMM 446 (475)
T ss_dssp HTTCTTTSSSCCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHH-HHHHH
T ss_pred HhCCCCCceeeCCCCccCEEEEeCCCccccccccccccccccccccccchhhHH-HHHHh
Confidence 999952 4 79999994 45655543333 3 2358899 87655
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-13 Score=135.25 Aligned_cols=246 Identities=13% Similarity=0.058 Sum_probs=148.0
Q ss_pred chhcccCccEEE-------ECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEE
Q 020186 8 PICSVSHYGRAI-------VMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80 (329)
Q Consensus 8 ~~Aa~GGvTtvi-------dmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~ 80 (329)
.+|++|||||++ +|||+.|..+....++.+.+.+++ .. +||++++.. ...+++++.++.++|+ ++|
T Consensus 147 ~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~-~~--v~~~~~g~~---~~~~l~el~el~~aGa-~gf 219 (570)
T 4ac7_C 147 DVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEG-LP--INVGILGKG---HGSSIAPIMEQIDAGA-AGL 219 (570)
T ss_dssp HHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHTT-CS--SEEEEEEEC---CCSSHHHHHHHHHHTC-CEE
T ss_pred HHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhhh-CC--eeEEEEecc---CCcCHHHHHHHHHcCC-CeE
Confidence 578999999999 788988888888888777766543 44 899999863 3446889999999995 599
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT 160 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt 160 (329)
|+|+.+. . +. ..|+++|++++++|.++++|||+.... + .+...+ +...|.++|..|+..
T Consensus 220 K~~~~~~-------~-~~-~~L~~aL~~A~~~g~~V~iHae~l~e~-g-------~Vedal----ea~~Gr~ih~~HiEg 278 (570)
T 4ac7_C 220 KIHEDWG-------A-TP-ASIDRSLTVADEADVQVAIHSDTLNEA-G-------FLEDTL----RAINGRVIHSFHVEG 278 (570)
T ss_dssp EEEGGGC-------C-CH-HHHHHHHHHHHHHTCEEEEECCTTCSS-C-------CHHHHH----HHHTTCCEEETTTTS
T ss_pred eeccCCC-------C-CH-HHHHHHHHHHHHcCCEEEEEcCCcchh-h-------HHHHHH----HHhCCCcceeEeeec
Confidence 9997532 2 34 889999999999999999999954321 1 122211 222477888888764
Q ss_pred HHH---HHHHHcccCCceEEEec-c---hhhhcchhhhcCCCCCCceEEcCCC---------CChhhHHHHHH-HHHcCC
Q 020186 161 MDA---VKFVESCKEGFVAATVT-P---QHLVLNRNALFQGGLRPHNYCLPVL---------KREIHRQAVVS-AVTSGS 223 (329)
Q Consensus 161 ~~s---l~~i~~ak~~~vt~Et~-p---hhL~l~~~~~~~~~~~~~~k~~PPL---------R~~~dr~aLw~-al~~G~ 223 (329)
... =++++.+.+.+|..-.+ | |-.-.-++.++- .-.....+|-+ |=..++.+-|+ .+..|.
T Consensus 279 ag~~hapd~i~~~~~~~vlps~t~Pt~p~~~n~~~e~ld~--l~v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~ 356 (570)
T 4ac7_C 279 AGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDM--LMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGI 356 (570)
T ss_dssp TTSSSTTTGGGGGGSTTEEEBCCGGGSSCBTTHHHHHHHH--HHHHTTCCTTCHHHHHHHHHHSCHHHHHHHHHHHHTTS
T ss_pred cccccChHHHHHhccCCccccccCCCCCcccchhHHhhhh--eeeecccCccccchhHHHHhhhhhhhcccccchhhcCC
Confidence 322 34555554445554332 1 111000011000 00000011111 00112233343 355688
Q ss_pred CCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHH-----HHH----------hcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 224 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK-----VFE----------EMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-----~~~----------~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
+- +++||.-.... .| |...+.+.. ... .++++++.++..+.|||+.+|+..
T Consensus 357 ~v-~~gSD~p~~~~---------~g----e~~~~~~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~ 422 (570)
T 4ac7_C 357 IS-MMSTDALAMGR---------AG----EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAH 422 (570)
T ss_dssp SC-BCCCCBTTSSC---------TT----CHHHHHHHHHHHHHHHHCSCTTCCTTCCHHHHHHHHHHHTHHHHHHHTCTT
T ss_pred EE-EEECcccccCC---------cC----cccCcHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCC
Confidence 87 99999632110 01 111111111 011 134689999999999999999842
Q ss_pred --C------cccEEEEe
Q 020186 289 --N------TSKIKLTK 297 (329)
Q Consensus 289 --~------dADlvi~~ 297 (329)
| .|||++++
T Consensus 423 ~~Gsi~~Gk~ADlvvld 439 (570)
T 4ac7_C 423 EVGSIEEGKFADLVLWE 439 (570)
T ss_dssp TSSSCCTTSBCCEEEEC
T ss_pred CCcccCCCCccCEEEEC
Confidence 3 79999995
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=133.47 Aligned_cols=250 Identities=11% Similarity=0.030 Sum_probs=135.6
Q ss_pred hhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHh-hCCCCccEEEEEEEEe----CCCCCHHHHHHHHhcCceeEEEEe
Q 020186 9 ICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILK-ALPASSNFTPLMTLYL----TDTTSPDEIKLARKTGVVFAVKLY 83 (329)
Q Consensus 9 ~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~----~~~~~~~el~~l~~~G~v~~~K~f 83 (329)
.++.+|||||.+|+++..+. ...++...+..++ ... +++.++. +.. ......+.+.++.+.|. ++.-+
T Consensus 114 ~~l~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~ 186 (430)
T 1ra0_A 114 WQIANGIQHVRTHVDVSDAT--LTALKAMLEVKQEVAPW--IDLQIVA-FPQEGILSYPNGEALLEEALRLGA--DVVGA 186 (430)
T ss_dssp HHHHTTEEEEEEEEECCSTT--CHHHHHHHHHHHHHTTT--CEEEEEE-ECTTCSSSSTTHHHHHHHHHHTTC--SEECC
T ss_pred HHHhcCccEEeeccccCChH--HHHHHHHHHHHHhhhhh--EEEEEEe-cCCcccccCchHHHHHHHHHHhCC--CeEee
Confidence 34699999999999763222 1233333333222 222 6765543 210 01111234666766652 22222
Q ss_pred eccccccCCCC-ccChHHHHHHHHHHhhHcCCcEEEecCCCC-CCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCH
Q 020186 84 PAGATTNSQDG-VTDLFGKCVHVLEEMVEQNMPLLVHGEVTD-PIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTM 161 (329)
Q Consensus 84 ~~~~~~~~~~~-~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~-~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~ 161 (329)
.. . .... ..+. +.+.++++.+++.|.++.+|++... ..... . + ..+.... . ... +.+++|.|.+..
T Consensus 187 ~~---~-~~~~~~~~~-~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~-~-~-~~~~~~~--~-~g~-~~~~~i~H~~~~ 254 (430)
T 1ra0_A 187 IP---H-FEFTREYGV-ESLHKTFALAQKYDRLIDVHCDEIDDEQSRF-V-E-TVAALAH--H-EGM-GARVTASHTTAM 254 (430)
T ss_dssp CG---G-GSSSHHHHH-HHHHHHHHHHHHHTCEEEEEECCSSCTTCCH-H-H-HHHHHHH--H-HTC-GGGEEEEECGGG
T ss_pred ee---c-ccccccccH-HHHHHHHHHHHHcCCCEEEEECCCCchhHHH-H-H-HHHHHHH--H-hCC-CCCEEEEecccc
Confidence 10 0 1111 0123 7889999999999999999996432 21111 0 1 0111111 1 223 678878887643
Q ss_pred HH------HHHHHcccCCceEEEecchh-hhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCC
Q 020186 162 DA------VKFVESCKEGFVAATVTPQH-LVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAP 234 (329)
Q Consensus 162 ~s------l~~i~~ak~~~vt~Et~phh-L~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaP 234 (329)
.. .+.++.+++..+++++||++ +.+... .+ .+||+|.... +++.+..|.++ +++|||++
T Consensus 255 ~~~~~~~~~~~i~~~~~~gv~v~~~p~~~~~~~~~------~~----~~p~~~~~~~---~~~~~~~Gv~~-~lgTD~~~ 320 (430)
T 1ra0_A 255 HSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGR------FD----TYPKRRGITR---VKEMLESGINV-CFGHDGVF 320 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHTCEEEECHHHHHHHTTT------TC----CSSCCCCCCC---HHHHHHTTCCE-EECCBCSS
T ss_pred ccCChHhHHHHHHHHHHcCCEEEECchhhhhhccc------cC----CCCCcCCCCC---HHHHHHCCCEE-EEeCCCCc
Confidence 21 13344333345788999974 333211 11 2688877655 55667789998 99999984
Q ss_pred CCcCcccccCCcCCccch-hHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 235 HERGRKECACGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 235 h~~~eK~~~~~~~Gi~~~-e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
+... +++ +..-+ |..+++.+....+.+++++++++++.|||++||++.| +|||+|+|
T Consensus 321 ~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~G~i~~G~~ADlvv~d 384 (430)
T 1ra0_A 321 DPWY----PLG--TANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQDYGIAAGNSANLIILP 384 (430)
T ss_dssp BTTB----SCC--CCCHHHHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSSCSSCTTSBCCEEEES
T ss_pred ccCC----CCC--CCCHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCcCCEEEEc
Confidence 2110 000 11111 2223322211111248899999999999999998533 79999994
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-13 Score=135.25 Aligned_cols=246 Identities=13% Similarity=0.058 Sum_probs=147.6
Q ss_pred chhcccCccEEE-------ECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEE
Q 020186 8 PICSVSHYGRAI-------VMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAV 80 (329)
Q Consensus 8 ~~Aa~GGvTtvi-------dmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~ 80 (329)
.+|++|||||++ +|||+.|..+....++.+.+.+++ .. +||++++.. ...+++++.++.++|+ ++|
T Consensus 147 ~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~-~~--v~~~~~g~~---~~~~l~el~el~~aGa-~gf 219 (570)
T 4ubp_C 147 DVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEG-LP--INVGILGKG---HGSSIAPIMEQIDAGA-AGL 219 (570)
T ss_dssp HHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTT-CS--SEEEEEEEC---CCSSHHHHHHHHHHTC-CEE
T ss_pred HHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhhh-CC--eeEEEEecc---CCcCHHHHHHHHHcCC-CeE
Confidence 578999999999 788988888888888777766543 44 899999863 3446889999999995 599
Q ss_pred EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 020186 81 KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT 160 (329)
Q Consensus 81 K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt 160 (329)
|+|+.+. . +. ..|+++|++++++|.++++|||+.... + .+...+ +...|.++|..|+..
T Consensus 220 K~~~~~~-------~-~~-~~L~~aL~~A~~~g~~V~iHae~l~e~-g-------~Vedal----ea~~Gr~ih~~HiEg 278 (570)
T 4ubp_C 220 KIHEDWG-------A-TP-ASIDRSLTVADEADVQVAIHSDTLNEA-G-------FLEDTL----RAINGRVIHSFHVEG 278 (570)
T ss_dssp EEEGGGC-------C-CH-HHHHHHHHHHHHHTCEEEEECCTTCSS-C-------CHHHHH----HHHTTCCEEETTTTS
T ss_pred eeccCCC-------C-CH-HHHHHHHHHHHHcCCEEEEEcCCcchh-h-------HHHHHH----HHhCCCceeEEEecc
Confidence 9997532 2 34 889999999999999999999954321 1 122211 222477888888764
Q ss_pred HHH---HHHHHcccCCceEEEec-c---hhhhcchhhhcCCCCCCceEEcCCC---------CChhhHHHHHH-HHHcCC
Q 020186 161 MDA---VKFVESCKEGFVAATVT-P---QHLVLNRNALFQGGLRPHNYCLPVL---------KREIHRQAVVS-AVTSGS 223 (329)
Q Consensus 161 ~~s---l~~i~~ak~~~vt~Et~-p---hhL~l~~~~~~~~~~~~~~k~~PPL---------R~~~dr~aLw~-al~~G~ 223 (329)
... =++++.+.+.+|..-.+ | |-.-.-++.++- .-.....+|-+ |=..++.+-|+ .+..|.
T Consensus 279 ag~~hapd~i~~~~~~~vlps~t~Pt~p~~~n~~~e~ld~--l~v~hhl~~~i~~D~~~a~~Rir~~~i~a~~~L~d~G~ 356 (570)
T 4ubp_C 279 AGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDM--LMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGI 356 (570)
T ss_dssp TTSSSTTTGGGGGGSTTEEEBCCSTTSSCBTTHHHHHHHH--HHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTS
T ss_pred cccccChHHHHHhccCCccccccCCCCCcccchhHHhhhh--eeeecccCccccchhHHHHhhhhhhccccccchhhcCC
Confidence 322 34555554445554332 1 110000000000 00000001111 00112233343 355688
Q ss_pred CCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHH-----HHH----------hcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 224 RKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAK-----VFE----------EMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-----~~~----------~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
+- +++||.-.... .| |...+.+.. ... .++++++.++..+.|||+.+|+..
T Consensus 357 ~v-~~gSD~p~~~~---------~g----e~~~~~~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~ 422 (570)
T 4ubp_C 357 IS-MMSTDALAMGR---------AG----EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAH 422 (570)
T ss_dssp SC-BCCCCBTTSSC---------TT----CHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTT
T ss_pred EE-EEECcccccCC---------cC----cccCcHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCC
Confidence 87 99999632110 01 111121111 111 134689999999999999999842
Q ss_pred --C------cccEEEEe
Q 020186 289 --N------TSKIKLTK 297 (329)
Q Consensus 289 --~------dADlvi~~ 297 (329)
| .|||++++
T Consensus 423 ~~Gsi~~Gk~ADlvvld 439 (570)
T 4ubp_C 423 EVGSIEEGKFADLVLWE 439 (570)
T ss_dssp TSSSCCTTSBCCEEEEC
T ss_pred CCcccCCCCccCEEEEC
Confidence 3 79999995
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-14 Score=152.03 Aligned_cols=254 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred chhcccCccEEEECCCCCC--------CCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeE
Q 020186 8 PICSVSHYGRAIVMPNLKP--------PITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 8 ~~Aa~GGvTtvidmPnt~p--------~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~ 79 (329)
..|+++|+||++++- +.| .......+....... .... +|+++++. +.....+++.++.+.|+ .+
T Consensus 417 ~eALasGVTTvv~gG-tgp~~~~~~~~~~~~~~~~~~~l~a~-~~~~--vn~g~~~~---~~~~~~~~L~el~~aGa-~g 488 (840)
T 4gy7_A 417 YEAISSGITTLVGGG-TGPAAGTRATTCTPSPTQMRLMLQST-DDLP--LNFGFTGK---GSSSKPDELHEIIKAGA-MG 488 (840)
T ss_dssp HHHHHHTEEEEEEEC-SSSCHHHHHSSCCCSHHHHHHHHHHT-TTSS--SEEEEEEE---CCCSSSHHHHHHHHHTC-SE
T ss_pred HHHHHhhHHHHHhCC-CceecCcccccccchHHHHHHHHhhh-hcce--eEEEEeCC---CCcccHHHHHHhhhcee-eE
Confidence 457889999999874 222 122233232222221 2122 78877654 33445678999999995 69
Q ss_pred EEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Q 020186 80 VKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 80 ~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS 159 (329)
+|+|+.+. . +. ..+.++++.+++.|..+.+|+|+...... +.. .++...+...|..|..
T Consensus 489 ~K~~~~~~-------~-t~-~~i~~aL~~A~e~g~~V~ih~e~~~~~~~--------vee----~laA~~g~~~h~~~~e 547 (840)
T 4gy7_A 489 LKLHEDWG-------S-TP-AAIDNCLTIAEHHDIQINIHTDTLNEAGF--------VEH----SIAAFKGRTIHTYHSE 547 (840)
T ss_dssp EEEETTTC-------C-CH-HHHHHHHHHHHHHTCEEEEECCTTCSSCC--------HHH----HHHHHTTCCEEETTTT
T ss_pred EEeccccC-------C-CH-HHHHHHHHHHHHhCCEEEEeccCcchhHH--------HHH----HHHhhcCCcccceecc
Confidence 99997542 2 23 78899999999999999999998654211 111 1223345667777765
Q ss_pred CHH---HHHHHHcccC-CceEEEecchhhh-----------------cchhhhcCCCCCCceEEcCCCCChhhHHHHHHH
Q 020186 160 TMD---AVKFVESCKE-GFVAATVTPQHLV-----------------LNRNALFQGGLRPHNYCLPVLKREIHRQAVVSA 218 (329)
Q Consensus 160 t~~---sl~~i~~ak~-~~vt~Et~phhL~-----------------l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~a 218 (329)
... +.++++.+.. ..+...+.+++.. ++.+..+ +..+.++||+|...+++.+|..
T Consensus 548 ~~~~~~A~dii~~~~~a~~l~~~t~~~~~~~~~~~~e~l~~~~~~~~l~~~i~e----d~~~~~s~~~~~~~a~~~ll~d 623 (840)
T 4gy7_A 548 GAGGGHAPDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMVCHHLDREIPE----DLAFAHSRIRKKTIAAEDVLND 623 (840)
T ss_dssp STTSCSTTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHHHTTCCTTSHH----HHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHhhcccceeeEeeccchhhhhhhhhhheeEEeeeccCccchh----hhhhccCcCCccchhHHHHHHh
Confidence 432 2233333322 2222223222211 1111111 2346678999999899999987
Q ss_pred HHcCCCCeEEecCCCCCCcCcccccCCcC-CccchhHHHHHHHH-HHHhcCCHHHHHHHHhhhhhhhcCC-CC-C-----
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKECACGCA-GIYNAPVALSLYAK-VFEEMGALDKLEAFTSFNGPDFYGL-PR-N----- 289 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~~~~~~-Gi~~~e~~lpll~~-~~~~~~~l~~~v~~~s~nPAkifgl-~~-~----- 289 (329)
+ |.++ +++|||+|+....+....... +......+.+.... +...++++++++++++.||||+||| ++ |
T Consensus 624 l--Gvi~-~isSD~~p~~~~~e~~~~~~~~a~~~~~~~g~~~~e~~~~~~Lsl~eAIr~aTiNPAraLGLddr~GSIEpG 700 (840)
T 4gy7_A 624 I--GAIS-IISSDSQAMGRVGEVISRTWQTADKMKAQTGPLKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVG 700 (840)
T ss_dssp T--TSSC-EEECCBTTTBCGGGHHHHHHHHHHHHHHHHCSCTTSCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSSCTT
T ss_pred C--CCeE-EEeccccccccccccchhhhcccccchhhcccchhhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCccccCCC
Confidence 7 9999 999999999876653211000 00000000000000 1112468999999999999999999 44 3
Q ss_pred -cccEEEEe
Q 020186 290 -TSKIKLTK 297 (329)
Q Consensus 290 -dADlvi~~ 297 (329)
+|||||||
T Consensus 701 K~ADLVLfD 709 (840)
T 4gy7_A 701 KLADLVMWK 709 (840)
T ss_dssp SBCCEEEEC
T ss_pred CcceEEEEC
Confidence 89999996
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=125.11 Aligned_cols=236 Identities=10% Similarity=0.022 Sum_probs=130.9
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC---CC---C----CHHHHHHHHh---
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT---DT---T----SPDEIKLARK--- 73 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~---~~---~----~~~el~~l~~--- 73 (329)
+..++.+||||+.+|++.. .+.+....+.+++.. ....+...+ .+ +. . ...+..++.+
T Consensus 119 ~~~~l~~GvTtv~~~~~~~-----~~~~~~~~~~~~~~g---~r~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 189 (439)
T 2i9u_A 119 IKDLIKNGTTRVALFATLH-----KDSTIELFNMLIKSG---IGAYVGKVN-MDYNCPDYLTENYITSLNDTEEIILKYK 189 (439)
T ss_dssp HHHHHHTTEEEEEEECCSC-----HHHHHHHHHHHHHHT---CEEEEECEE-CCSSCCTTSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCceEEEEccccc-----cchHHHHHHHHHHcC---CEEEEEeee-ccccCCcccchhHHHHHHHHHHHHHHHh
Confidence 3578999999999998642 233333344333322 332221111 11 10 1 1223334433
Q ss_pred cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH-------HHHHHHH
Q 020186 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT-------ILQPLIQ 146 (329)
Q Consensus 74 ~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~-------~~~~~la 146 (329)
.|. -.+|++.+. ......+. +.+.++++.+++.|.++.+|+.+.. .|...+.+ .+ ..+
T Consensus 190 ~~~-~~i~~~~~~----~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~~~~~-------~~~~~~~~~~~~~~~~~--~~~ 254 (439)
T 2i9u_A 190 DKS-NIVKPIITP----RFVPSCSN-ELMDGLGKLSYKYRLPVQSHLSENL-------DEIAVVKSLHKKSNFYG--EVY 254 (439)
T ss_dssp TTC-SSEEECBEE----CCGGGCCH-HHHHHHHHHHHHHTCCEEEEESCCH-------HHHHHHHHHCTTCSSHH--HHH
T ss_pred CCC-CceEEEEec----CCcCcCCH-HHHHHHHHHHHhcCCcEEEeecCCh-------HHHHHHHHHhCCCCCHH--HHH
Confidence 221 124665432 11111234 7899999999999999999998641 11111110 11 112
Q ss_pred h---cCC-CeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH
Q 020186 147 R---LPQ-LKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 147 ~---~~~-~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
+ ..+ .+..+.|.. +.+.++++++ ..+++++||++-. .+ +. ..||+| +.+.
T Consensus 255 ~~~g~~~~~~~~i~H~~~~~~~~~~~l~~---~g~~~~~~p~~~~----~l-----~~---~~~~~~---------~~~~ 310 (439)
T 2i9u_A 255 DKFGLFGNTPTLMAHCIHSSKEEINLIKR---NNVTIVHCPTSNF----NL-----GS---GMMPVR---------KYLN 310 (439)
T ss_dssp HHTTCSSSSCEEEEECCSCCHHHHHHHHH---TTCEEEECHHHHH----HT-----TC---CCCCHH---------HHHH
T ss_pred HHcCCCCCCCeEEEEEecCCHHHHHHHHH---cCCEEEECccchh----hc-----cc---ccCCHH---------HHHH
Confidence 2 223 444455543 4567777764 3578899998632 11 11 245543 5678
Q ss_pred cCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--------hcCCHHHHHHHHhhhhhhhcCCCCC---
Q 020186 221 SGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--------EMGALDKLEAFTSFNGPDFYGLPRN--- 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--------~~~~l~~~v~~~s~nPAkifgl~~~--- 289 (329)
.|.++ +++|||.|... .-.--+..+.+.+.... ..+++++++++++.||||+|| ..|
T Consensus 311 ~Gv~~-~lgtD~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg-~~Gsl~ 378 (439)
T 2i9u_A 311 LGINV-VLGSDISAGHT----------CSLFKVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFG-KVGSFE 378 (439)
T ss_dssp TTCEE-EECCCBTTBCC----------SCHHHHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTS-SCSSCS
T ss_pred CCCcE-EEecCCCCCCC----------cCHHHHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHHHhc-cCCccC
Confidence 89998 99999976320 00001223333332222 468999999999999999998 433
Q ss_pred ---cccEEEE--ecceee
Q 020186 290 ---TSKIKLT--KIPWKV 302 (329)
Q Consensus 290 ---dADlvi~--~~~~~v 302 (329)
+|||+|+ +..|++
T Consensus 379 ~G~~ADlvvld~~~~~~~ 396 (439)
T 2i9u_A 379 EGYDFDALVINDSNLYPE 396 (439)
T ss_dssp TTCBCCEEEECCTTSCGG
T ss_pred CCCccCEEEEeCCCcccc
Confidence 7999999 344544
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-12 Score=123.25 Aligned_cols=248 Identities=10% Similarity=0.048 Sum_probs=138.0
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEE-EEEeCC----------CCCHHH----HHH
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLM-TLYLTD----------TTSPDE----IKL 70 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~-~~~~~~----------~~~~~e----l~~ 70 (329)
++.+++++||||+++|+++.+. ...++ +..+.......++.+.+ .+.... ....++ +.+
T Consensus 120 ~~~~~l~~GvTtv~d~~~~~~~---~~~~~---~~~~~g~~~g~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (458)
T 2p9b_A 120 NATTLLESGVTTIRTLGDVGYE---VVTLR---DQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEARTAVAQ 193 (458)
T ss_dssp HHHHHHHTTEEEEEESCCSSSH---HHHHH---HHHHTTSSCCCEEECCCSCEECCCSSCCCCEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEeCCCCccc---cHHHH---HHHHcCCCCCCeEEecccccccCCCCCccccCccCCCHHHHHHHHHH
Confidence 5678899999999999865431 12222 22221110001221110 010010 012333 334
Q ss_pred HHhcCceeEEEEeeccccccC------CCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHH
Q 020186 71 ARKTGVVFAVKLYPAGATTNS------QDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPL 144 (329)
Q Consensus 71 l~~~G~v~~~K~f~~~~~~~~------~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~ 144 (329)
+.+.|. ..+|+|+.++.... +....+. +.+.++++.+++.|.++.+|+++.. .+.+.+ .
T Consensus 194 ~~~~g~-~~ik~~~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~~~~~-----------~i~~~~--~ 258 (458)
T 2p9b_A 194 NLKAGV-NAIKIAATGGVTDAQEIGEAGSPQMSV-EQMRAICDEAHQYGVIVGAHAQSPE-----------GVRRSL--L 258 (458)
T ss_dssp HHHTTC-SCEEEECSCCTTSCCCC------CCCH-HHHHHHHHHHHHTTCCEEEEECSHH-----------HHHHHH--H
T ss_pred HHHcCC-CEEEEEecCCcCCCCccCCCCCCcCCH-HHHHHHHHHHHHCCCeEEEEeCCHH-----------HHHHHH--H
Confidence 455563 47899975422111 1112233 7899999999999999999998531 233322 1
Q ss_pred HHhcCCCeEEEEecC--CHHHHHHHH------cccCCceEEEecc--hhhhcchhhhcCCCCCCceEEcCCCCChhhHHH
Q 020186 145 IQRLPQLKVVMEHIT--TMDAVKFVE------SCKEGFVAATVTP--QHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA 214 (329)
Q Consensus 145 la~~~~~~lhi~HvS--t~~sl~~i~------~ak~~~vt~Et~p--hhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~a 214 (329)
.|.. .+.|.. +.+.++.++ +.. ..+.....| +++++.... . +.......+||.|.+.++..
T Consensus 259 ----~G~~-~i~H~~~~~~~~~~~~~~~~~~~~~g-~~v~p~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 329 (458)
T 2p9b_A 259 ----AGVD-TIEHGSVLDDELIGMFRHNPNALRGY-SALIPTLSAGLPLTLLGQDV-T--GITDIQLENSKNVVGGMVSG 329 (458)
T ss_dssp ----HTCS-EEEECCCCCHHHHHHHHCCTTSTTSC-CEEECCHHHHHHHHHSCHHH-H--CCCHHHHHHHHHHHHHHHHH
T ss_pred ----cCCC-EEEECCCCCHHHHHHHhcccccccCC-eEEEeecchhhHHHhhhccc-c--cCCHHHHHHHHHHHHHHHHH
Confidence 1433 355544 467777777 322 333222211 223333211 1 11122334467777778889
Q ss_pred HHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCC--C--
Q 020186 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPR--N-- 289 (329)
Q Consensus 215 Lw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~--~-- 289 (329)
+++.+..|... +++|||.+ ++.+.|....|.. .... ..+++++++++++.||||++|++. |
T Consensus 330 ~~~~~~~Gv~~-~~gtD~~~--------~~~~~~~~~~e~~-----~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~Gsi 395 (458)
T 2p9b_A 330 ARQAHEAGLMI-GVGTDTGM--------TFVPQYATWRELE-----LLVAYAGFSPAEALHAATAVNASILGVDAETGSL 395 (458)
T ss_dssp HHHHHHTTCCB-CCCCCTTS--------TTSCTTCHHHHHH-----HHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSSSC
T ss_pred HHHHHHCCCeE-EEecCCCC--------CCCccccHHHHHH-----HHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCCcc
Confidence 99999999998 99999842 1112232222221 1223 378999999999999999999952 3
Q ss_pred ----cccEEEEe
Q 020186 290 ----TSKIKLTK 297 (329)
Q Consensus 290 ----dADlvi~~ 297 (329)
+|||+|+|
T Consensus 396 ~~Gk~ADlvvld 407 (458)
T 2p9b_A 396 EVGKSADLLVLN 407 (458)
T ss_dssp CTTSBCCEEEES
T ss_pred CCCCcCCEEEEC
Confidence 79999994
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-14 Score=133.21 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=95.2
Q ss_pred HHHhcCCCeEEEEecC-CHHHHHHHHc-----ccCCceEEEecchhh---hcchhhhcCCCCCCceEEcCC--CCChhhH
Q 020186 144 LIQRLPQLKVVMEHIT-TMDAVKFVES-----CKEGFVAATVTPQHL---VLNRNALFQGGLRPHNYCLPV--LKREIHR 212 (329)
Q Consensus 144 ~la~~~~~~lhi~HvS-t~~sl~~i~~-----ak~~~vt~Et~phhL---~l~~~~~~~~~~~~~~k~~PP--LR~~~dr 212 (329)
.+|+..|.++|+ |++ +.++++.+.+ +++..+..++++|++ .+++++++. ...++|+ +|-...+
T Consensus 188 ~~a~~~g~~v~~-H~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~H~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~ 261 (406)
T 1p1m_A 188 DTAKSLNAPVTI-HLYETSKEEYDLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPF-----FVSHNPASNLKLGNGI 261 (406)
T ss_dssp HHHHHTTCCEEE-EESCSTTCCCCTHHHHTTTTTTSCEEEEECTTCCGGGTTTTTTSSE-----EEEECHHHHHHTTCCC
T ss_pred HHHHHCCCcEEE-EcCCCchHHHHHHHhhhCCHhHcCcceeEeeeccCcccCCHHHHHH-----HHHhCcHHHhhcCCCc
Confidence 445555555555 554 4333333332 333334448999999 898887642 2256665 2322344
Q ss_pred HHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHH--HhcCCHHHHHHHHhhhhhhhcCCCCC-
Q 020186 213 QAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVF--EEMGALDKLEAFTSFNGPDFYGLPRN- 289 (329)
Q Consensus 213 ~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~--~~~~~l~~~v~~~s~nPAkifgl~~~- 289 (329)
..+|+++.+|.++ +++|||+++..... .-.|..+++++... .+.+++++++++++.||||+||++.|
T Consensus 262 ~~~~~~~~~Gv~~-~lgtD~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~G~ 331 (406)
T 1p1m_A 262 APVQRMIEHGMKV-TLGTDGAASNNSLN---------LFFEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSGK 331 (406)
T ss_dssp CCHHHHHHTTCEE-EECCCCTTTTSCCC---------HHHHHHHHHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCSCSS
T ss_pred CcHHHHHhCCCeE-EEECCCCcCCCCCC---------HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHhCCCCcc
Confidence 5799999999998 99999988642211 11245566555432 34689999999999999999998534
Q ss_pred -----cccEEEE--ecceeecCCc
Q 020186 290 -----TSKIKLT--KIPWKVPEAF 306 (329)
Q Consensus 290 -----dADlvi~--~~~~~v~~~~ 306 (329)
+|||+|+ +..|.++.++
T Consensus 332 l~~G~~ADlvv~d~~~~~~~~~~~ 355 (406)
T 1p1m_A 332 IEEGWNADLVVIDLDLPEMFPVQN 355 (406)
T ss_dssp CCTTSBCCEEEEECCSGGGCSGGG
T ss_pred cCCCCcccEEEEeCCccccCCccC
Confidence 7999999 4566655444
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=123.39 Aligned_cols=233 Identities=11% Similarity=-0.064 Sum_probs=125.8
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCC----CHHHHHHHHhc----Cc
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTT----SPDEIKLARKT----GV 76 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~----~~~el~~l~~~----G~ 76 (329)
++..++++|||||+||+++ .+.++. .+.+ .. ++..+...+ .+ ... ..++..++.+. +.
T Consensus 137 ~~~~~l~~GvTtv~d~~~~------~~~~~~---~~~~-~g--~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (420)
T 2imr_A 137 GADTLTRLGAGGVGDIVWA------PEVMDA---LLAR-ED--LSGTLYFEV-LNPFPDKADEVFAAARTHLERWRRLER 203 (420)
T ss_dssp HHHHHHHTTCCCEEEEECS------HHHHHH---HHTC-TT--CCEEEEEEE-CBCCGGGHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHhcCcEEEEEccCC------HHHHHH---HHHh-cC--cEEEEEeee-cCCCchhhHHHHHHHHHHHHHHhcccC
Confidence 4567899999999999853 233321 2222 22 444333222 12 111 11233333321 11
Q ss_pred eeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCC-CCCChhH------------------HH----
Q 020186 77 VFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTD-PIVDIFD------------------RE---- 133 (329)
Q Consensus 77 v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~-~~~~~~~------------------~E---- 133 (329)
-.+|++++.. .....+. +.+.++++.+++.|.++.+|+.... ....... .+
T Consensus 204 -~~i~~~~~~~----~~~~~~~-~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 2imr_A 204 -PGLRLGLSPH----TPFTVSH-RLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGR 277 (420)
T ss_dssp -TTEEEEEEEC----CSSSBCH-HHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTS
T ss_pred -CceEEEecCC----cCCCcCH-HHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHhhccccccccccchhhhhhhhccc
Confidence 1347765431 1122234 7899999999999999999996431 0000000 00
Q ss_pred -----HHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCC
Q 020186 134 -----KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKR 208 (329)
Q Consensus 134 -----~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~ 208 (329)
...+......-+........|.+|++ .+.++++++. .+++++||++... + + ..+||+|
T Consensus 278 ~~~~~~~~~~~~~~~g~l~~~~~i~H~~~l~-~~~i~~l~~~---g~~~~~~p~~~~~----~-----~---~~~~~l~- 340 (420)
T 2imr_A 278 EPGPDLTPVRYLDELGVLAARPTLVHMVNVT-PDDIARVARA---GCAVVTCPRSNHH----L-----E---CGTFDWP- 340 (420)
T ss_dssp CCCTTCCHHHHHHHHTCGGGCCEEEECCSCC-HHHHHHHHHH---TCCEEECHHHHHH----T-----T---CCCCCHH-
T ss_pred cccCCCCHHHHHHHcCCCCCCeEEEecCcCC-HHHHHHHHHc---CCeEEECHHHHHH----h-----c---cCCCCHH-
Confidence 00011110000111123456777776 6778888764 4678999997431 1 1 1257765
Q ss_pred hhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC-
Q 020186 209 EIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP- 287 (329)
Q Consensus 209 ~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~- 287 (329)
+.+++|.++ +++|||.++.. +..-.+ -+..+.+ ....+++++++++++.||||+||++
T Consensus 341 --------~~~~~Gv~~-~lgtD~~~~~~----------~~~~~~-~~~~~~~-~~~~ls~~~al~~aT~n~A~~lgl~~ 399 (420)
T 2imr_A 341 --------AFAAAGVEV-ALGTDSVASGE----------TLNVRE-EVTFARQ-LYPGLDPRVLVRAAVKGGQRVVGGRT 399 (420)
T ss_dssp --------HHHHTTCCE-EECCCCHHHHS----------CSCTHH-HHHHHHH-HCTTSCHHHHHHHHHHHHHHHHC--C
T ss_pred --------HHHHCCCeE-EEECCCCccCC----------CCCHHH-HHHHHHh-cCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 577889998 99999965311 111011 1111111 1136899999999999999999994
Q ss_pred -CC------cccEEEE
Q 020186 288 -RN------TSKIKLT 296 (329)
Q Consensus 288 -~~------dADlvi~ 296 (329)
.| +||| ||
T Consensus 400 ~~GsL~~Gk~ADl-vv 414 (420)
T 2imr_A 400 PFLRRGETWQEGF-RW 414 (420)
T ss_dssp CCCSTTSBCCGGG-BG
T ss_pred CceeeCCCCccCE-EE
Confidence 24 7999 55
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-14 Score=146.61 Aligned_cols=253 Identities=11% Similarity=-0.037 Sum_probs=154.9
Q ss_pred hhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeecccc
Q 020186 9 ICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGAT 88 (329)
Q Consensus 9 ~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~~ 88 (329)
++..|+++....||++.++. .. ...+...+..... +|+++++.. .......+..+..+++ .++|.+..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~t~~--~~-~~~~~~~a~~~~~--~~~~~~~~~---~~~~~~~~~~~~~a~~-~g~~~~~~~~- 222 (566)
T 4ep8_C 153 MVGGGTGPAAGTHATTCTPG--PW-YISRMLQAADSLP--VNIGLLGKG---NVSQPDALREQVAAGV-IGLKIHEDWG- 222 (566)
T ss_dssp EEEECSSSSHHHHHCCCCCH--HH-HHHHHHHHHTTSS--SEEEEEEEC---CCSCHHHHHHHHHHTC-SEEEEEGGGC-
T ss_pred HhhCceEEEEecCCCCCchH--HH-HHHHHHHhccccc--eeeeeeccc---ccccchhhHHHhhhcc-cccccccccc-
Confidence 34455566666677665543 22 2233333333333 899998764 2445667777777774 5889886432
Q ss_pred ccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCCh--------------------hHHHHHHHHHHHHHHHHhc
Q 020186 89 TNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDI--------------------FDREKVFIDTILQPLIQRL 148 (329)
Q Consensus 89 ~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~--------------------~~~E~~av~~~~~~~la~~ 148 (329)
... ..+...+......+....+|++........ ...+..++.+.. ..+..
T Consensus 223 -------~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~ 292 (566)
T 4ep8_C 223 -------ATP-AAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITAC--AHPNI 292 (566)
T ss_dssp -------CCH-HHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGG--GCTTE
T ss_pred -------ccc-hhhhhHhHHHHHhcchhhhhhhhHHHHHHHHhhHhhccCccccccccccchhHHHHHHHHHH--HHHhh
Confidence 122 566777888888899999999876543110 011222333443 34555
Q ss_pred CCCeEEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEE
Q 020186 149 PQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFL 228 (329)
Q Consensus 149 ~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i 228 (329)
...+.++.|.++..+++... ..+++.||+.++..... .+.+..++.+ .....|..+..|.++ ++
T Consensus 293 ~~~~~~~~~~~~~~~~~e~~-------~~~~~~h~l~~~~~~~~-----~~~~~~~~~~---~~~~~~~l~~~G~~~-~i 356 (566)
T 4ep8_C 293 LPSSTNPTLPYTLNTIDEHL-------DMLMVCHHLDPDIAEDV-----AFAESRIRRE---TIAAEDVLHDLGAFS-LT 356 (566)
T ss_dssp EEEECSTTSSCBTTHHHHHH-------HHHHHHHTCCTTCHHHH-----HHHHHHCCHH---HHHHHHHHHHHTSSC-EE
T ss_pred cCCceeehhHHHHHHhhccc-------ceEEEeecccCChhhHH-----hhccCCCccc---chHHHHHHHhCCCcc-eE
Confidence 56677777887777666543 33578899988865543 2444445433 334455556679999 99
Q ss_pred ecCCCCCCcCcccccCCcCCccchhHHHHHHHHH-H-HhcCCHHHHHHHHhhhhhhhcCC-CC-C------cccEEEEe
Q 020186 229 GTDSAPHERGRKECACGCAGIYNAPVALSLYAKV-F-EEMGALDKLEAFTSFNGPDFYGL-PR-N------TSKIKLTK 297 (329)
Q Consensus 229 ~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~-~-~~~~~l~~~v~~~s~nPAkifgl-~~-~------dADlvi~~ 297 (329)
+|||+|+....+.......+....+..+..++.. . ...+++++++++++.||||+||| ++ | +|||||||
T Consensus 357 ~sD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~d~iGSIevGK~ADLVL~D 435 (566)
T 4ep8_C 357 SSDSQAMGRVGEVILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWS 435 (566)
T ss_dssp CCCTTSSSCTTCHHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEEC
T ss_pred eecccccccccccccccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCEEEEC
Confidence 9999999877664221112222222222222221 1 22568999999999999999999 43 3 89999996
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-14 Score=138.31 Aligned_cols=244 Identities=12% Similarity=-0.003 Sum_probs=128.3
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEee
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYP 84 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~ 84 (329)
+++.+++.|||||++||+++.|+.+..+.++.+.+.+++... ..-+++|.. ++-.... ..|.
T Consensus 77 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~g~~~~---g~~~~~~------~~g~-------- 138 (376)
T 1o12_A 77 EMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILENPS-TSLLGVHLE---GPYISKE------KKGA-------- 138 (376)
T ss_dssp HHHHHHHTTTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCTT-CSEEEEEEE---CSSSCGG------GCTT--------
T ss_pred HHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhccCC-CceEEEEEE---cCcCCcc------cCCC--------
Confidence 456788999999999999887765555556555555543111 012344432 2100000 0111
Q ss_pred ccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHH
Q 020186 85 AGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAV 164 (329)
Q Consensus 85 ~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl 164 (329)
.+ ...+... . .+.++.....-..+.+++|... . +++ .+|+..|+++|+.|.. +++
T Consensus 139 ----~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~pe~~~------------~-~~i--~~A~~~g~~v~igH~~--~~~ 193 (376)
T 1o12_A 139 ----HS-EKHIRPP-S--ERELSEIDSPAKMLTFAPEIES------------S-ELL--LRLVKRDIVLSAGHSI--ATF 193 (376)
T ss_dssp ----SC-TTTCCCC-C--HHHHTTCCTTEEEEEECTTSTT------------G-GGG--GGGGGGTCEEEECSBC--CCH
T ss_pred ----CC-HHHhcCC-C--HHHHHHhhCCeEEEEEccCCcc------------H-HHH--HHHHHCCCEEEeecCc--cCH
Confidence 00 0001110 0 1122222111124556665331 1 345 6789999999999965 345
Q ss_pred HHHHcccC---Cce----EEEecchhhh-------cchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC-CCeEEe
Q 020186 165 KFVESCKE---GFV----AATVTPQHLV-------LNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS-RKFFLG 229 (329)
Q Consensus 165 ~~i~~ak~---~~v----t~Et~phhL~-------l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~-Id~~i~ 229 (329)
+.++++++ ..+ ++++++|||. |+.++....-.....+++|| +.+.+++.. |. .. ++.
T Consensus 194 ~~i~~a~~~G~~~itH~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~p~-----~~~~~~~~~--g~~~~-~~~ 265 (376)
T 1o12_A 194 EEFMKFYKEGVKRITHFPNGLKPLHHREIGITGAGLLLDDVKLELICDGVHLSRE-----MVKLVYKVK--KANGI-VLV 265 (376)
T ss_dssp HHHHHHHTTTCCEESSTTTTBCCCCSSCCHHHHHHHHCTTCEEEEECSSSSSCHH-----HHHHHHHHH--TGGGE-EEE
T ss_pred HHHHHHHHCCCCeEEecccCcCChhhcccchhhhhhcCCcceEEEeCCCcCcCHH-----HHHHHHhhC--CCCCE-EEe
Confidence 55555543 223 2889999974 21122100000112455553 455565543 22 45 788
Q ss_pred cCCCCCC-----c----------CcccccCCcCCccchhHHHHHHHH-HHH-hcCCHHHHHHHHhhhhhhhcCCCC-C--
Q 020186 230 TDSAPHE-----R----------GRKECACGCAGIYNAPVALSLYAK-VFE-EMGALDKLEAFTSFNGPDFYGLPR-N-- 289 (329)
Q Consensus 230 SDHaPh~-----~----------~eK~~~~~~~Gi~~~e~~lpll~~-~~~-~~~~l~~~v~~~s~nPAkifgl~~-~-- 289 (329)
||..... . +++.......++.|.+..|+..+. .+. ..+++++++++++.||||+||++. |
T Consensus 266 sd~~~~~g~~~g~~~~~g~~~~~~~g~~~~~~g~~~g~~~~l~~~l~~~~~~~~~~~~~~l~~~T~~~A~~lgl~~~G~i 345 (376)
T 1o12_A 266 TDSISAAGLKDGTTTLGDLVVKVKDGVPRLEDGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLDDRGRI 345 (376)
T ss_dssp CCBCTTTTSCSCEEESSSSEEEEETTEEECTTSCBCCBCCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTSSCC
T ss_pred cCchhhcCCCCeeEEECCeEEEEeCCeEEeCCCcccccccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCccC
Confidence 9874111 0 111100122345555556666554 333 478999999999999999999953 4
Q ss_pred ----cccEEEEecc
Q 020186 290 ----TSKIKLTKIP 299 (329)
Q Consensus 290 ----dADlvi~~~~ 299 (329)
+|||+|+|..
T Consensus 346 ~~G~~ADlv~~d~~ 359 (376)
T 1o12_A 346 AEGTRADLVLLDED 359 (376)
T ss_dssp STTSBCCEEEECTT
T ss_pred CCCCcCCEEEECCC
Confidence 7999999643
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.4e-11 Score=116.16 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=126.5
Q ss_pred hcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCC-------------C----CHHHHHHHH
Q 020186 10 CSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDT-------------T----SPDEIKLAR 72 (329)
Q Consensus 10 Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~-------------~----~~~el~~l~ 72 (329)
++.+||||+++|+++.|...+.+.++.+.+..++. . +...+..+. ...+ . ..+++.++.
T Consensus 126 ~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-g--~r~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 201 (492)
T 2paj_A 126 LARSGCATVADHNYVYYPGMPFDSSAILFEEAEKL-G--LRFVLLRGG-ATQTRQLEADLPTALRPETLDAYVADIERLA 201 (492)
T ss_dssp HHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHT-T--CEEEEEECC-CSCCCSCSTTSCGGGCCCCHHHHHHHHHHHH
T ss_pred HHhcCcEEEEechhhcccccccchHHHHHHHHHHc-C--CEEEEEchh-hcccccccccCCccccccCHHHHHHHHHHHH
Confidence 89999999999997666443344455555544432 2 444332221 1100 0 123344555
Q ss_pred hc--Cce--eEEEEeeccccccCCC-CccChHHHHHHHHHHhhHcCCcEEEecCCCCC-CCChhHH-HHHHHHHHHHHHH
Q 020186 73 KT--GVV--FAVKLYPAGATTNSQD-GVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDP-IVDIFDR-EKVFIDTILQPLI 145 (329)
Q Consensus 73 ~~--G~v--~~~K~f~~~~~~~~~~-~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~-~~~~~~~-E~~av~~~~~~~l 145 (329)
+. +.. -.+|++++. .+. ...+. +.+.++++.+++.|.++.+|+++... ....... ....+.. + .-
T Consensus 202 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g~~~~~~-~--~~ 273 (492)
T 2paj_A 202 ARYHDASPRAMRRVVMAP----TTVLYSISP-REMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYGKSPVAF-C--GE 273 (492)
T ss_dssp HHTCCCSTTCSEEEEECC----TTTTTSSCH-HHHHHHHHHHHHTTCEEEEECC-------------CCCHHHH-H--HH
T ss_pred HHhccCCCCCceEEEEec----ccCCCCCCH-HHHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHcCCCHHHH-H--HH
Confidence 42 100 025666542 122 12234 78999999999999999999986421 1000000 0001111 1 11
Q ss_pred HhcCCCe---EEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 146 QRLPQLK---VVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 146 a~~~~~~---lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
....+.+ .|.+|++ .+.++.+++ ..+++++||..- +. .+ .-.||+|+ .+..|
T Consensus 274 ~g~~~~~~~i~H~~~~~-~~~i~~l~~---~gv~v~~~p~~~------~~---l~---~~~~p~~~---------~~~~G 328 (492)
T 2paj_A 274 HDWLGSDVWYAHLVKVD-ADEIALLAQ---TGTGVAHCPQSN------GR---LG---SGICPVRE---------MADAG 328 (492)
T ss_dssp TTCCSTTEEEESCCSCC-HHHHHHHHH---HTCEEEECHHHH------HC---C--------CCTT---------HHHHT
T ss_pred CCCCCCCcEEEEEecCC-HHHHHHHHH---cCCEEEECchhh------cc---cC---CCCCCHHH---------HHHCC
Confidence 1122334 4555554 455666665 357899999531 11 11 12488887 45679
Q ss_pred CCCeEEecCCCCCCcCcccccC-CcCCccchhHHHH--HHHH-H-------HHhcCCHHHHHHHHhhhhhhhcCCCC-C-
Q 020186 223 SRKFFLGTDSAPHERGRKECAC-GCAGIYNAPVALS--LYAK-V-------FEEMGALDKLEAFTSFNGPDFYGLPR-N- 289 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~-~~~Gi~~~e~~lp--ll~~-~-------~~~~~~l~~~v~~~s~nPAkifgl~~-~- 289 (329)
... +++|||.++.... .++ ...+..+++...+ .+|. . ....+++++++++.+.||||++|+++ |
T Consensus 329 v~v-~lgTD~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lgl~~~Gs 405 (492)
T 2paj_A 329 VPV-SIGVDGAASNEAA--DMISEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLDEVGK 405 (492)
T ss_dssp CCE-EECCCHHHHCSCC--SHHHHHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCTTSSC
T ss_pred CcE-EEeCCCCCCCCCC--CHHHHHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhCCCCccc
Confidence 888 9999997642110 000 0001111111111 0111 0 12358999999999999999999852 3
Q ss_pred -----cccEEEEe
Q 020186 290 -----TSKIKLTK 297 (329)
Q Consensus 290 -----dADlvi~~ 297 (329)
+|||+|+|
T Consensus 406 l~~Gk~ADlvvld 418 (492)
T 2paj_A 406 VAVGYAADIAVYR 418 (492)
T ss_dssp CSTTSBCCEEEEE
T ss_pred cCCCCccCEEEEe
Confidence 79999994
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-11 Score=111.93 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=111.1
Q ss_pred hcCceeEEEEeeccccccC----CCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 020186 73 KTGVVFAVKLYPAGATTNS----QDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRL 148 (329)
Q Consensus 73 ~~G~v~~~K~f~~~~~~~~----~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~ 148 (329)
+.|. ..+|+|..++.... +....+. +.+.++++.+++.|.++.+|+.+. ..+...+ .
T Consensus 177 ~~g~-~~ik~~~~g~~~~~~~~~g~~~~~~-~~l~~~~~~A~~~g~~v~~H~~~~-----------~~i~~~~--~---- 237 (408)
T 3be7_A 177 KYGA-DLIKFCATGGVMSRNTDVNAKQFTL-EEMKAIVDEAHNHGMKVAAHAHGL-----------IGIKAAI--K---- 237 (408)
T ss_dssp HTTC-SEEEEECBCCSSSSSCCTTSBCSCH-HHHHHHHHHHHHTTCEEEEEECSH-----------HHHHHHH--H----
T ss_pred hcCC-CEEEEEecCCcCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCEEEEEeCCH-----------HHHHHHH--H----
Confidence 4564 57899975421111 1122234 789999999999999999999853 1233322 1
Q ss_pred CCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCCh------hhHHHHHHHHH
Q 020186 149 PQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE------IHRQAVVSAVT 220 (329)
Q Consensus 149 ~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~------~dr~aLw~al~ 220 (329)
.|+. .|.|.. +.+.++.+++. .+.. ||+.+. .+.+.. .+...++.|++|.+ .++..+++.+.
T Consensus 238 ~g~~-~i~H~~~~~~~~i~~~~~~---g~~v--~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T 3be7_A 238 AGVD-SVEHASFIDDETIDMAIKN---NTVL--SMDIFV--SDYILG--EGAKAGIREESLNKERLVGKKQRENFMNAHR 307 (408)
T ss_dssp HTCS-EEEECTTCCHHHHHHHHHT---TCEE--ECCCST--HHHHHT--TTTTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-EEEECCCCCHHHHHHHHHC---CCEE--eeeecH--HHHhhh--hccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444 477776 45666666542 3333 444322 122211 12234566666553 23567899999
Q ss_pred cCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC-CC------cccE
Q 020186 221 SGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP-RN------TSKI 293 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~-~~------dADl 293 (329)
.|... +++|||.++ +. |....|..+ + .+..+++++++++++.|||++||++ .| +|||
T Consensus 308 ~Gv~~-~~gTD~~~~-------p~---~~~~~~~~~--~---~~~gls~~~al~~~T~n~A~~lgl~~~G~i~~G~~ADl 371 (408)
T 3be7_A 308 RGAII-TFGTDAGIF-------DH---GDNAKQFAY--M---VEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADI 371 (408)
T ss_dssp HTCCE-ECCCCBTTB-------CT---TCGGGHHHH--H---HHTTCCHHHHHHTTTHHHHHHHTCSSCSSCCTTSBCCE
T ss_pred CCCEE-EEECCCCCC-------CC---chHHHHHHH--H---HHcCCCHHHHHHHHHHHHHHHhCCCcccccCCCCccCE
Confidence 99998 999999542 11 222222221 1 2347899999999999999999985 33 7999
Q ss_pred EEEe
Q 020186 294 KLTK 297 (329)
Q Consensus 294 vi~~ 297 (329)
+|+|
T Consensus 372 vvld 375 (408)
T 3be7_A 372 VGVI 375 (408)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9994
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=114.33 Aligned_cols=223 Identities=8% Similarity=-0.060 Sum_probs=136.7
Q ss_pred ccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEE-EEEe-----C---CCCCHHHHHHHHhc-C
Q 020186 6 ILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLM-TLYL-----T---DTTSPDEIKLARKT-G 75 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~-~~~~-----~---~~~~~~el~~l~~~-G 75 (329)
.+.+|+.+|+||+++|||+.|...+.+.++...+.+++ .. +++.+.+ +... . .....+++.++.+. |
T Consensus 108 ~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~-~~--~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~~~ 184 (608)
T 3nqb_A 108 YAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIEN-LP--LRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPE 184 (608)
T ss_dssp HHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTT-CS--SEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTSTT
T ss_pred HHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhh-cC--cEEEEeccccCCCCCccccCcccCCHHHHHHHHhccC
Confidence 45788999999999999998887777777766665543 33 6766654 2100 0 01245688888764 6
Q ss_pred ceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEE
Q 020186 76 VVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVM 155 (329)
Q Consensus 76 ~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi 155 (329)
+.+++-||.+. +....+ +.+++.++.+++.|.++.+||++.. ...+... + ..|...
T Consensus 185 -v~glgE~~~~~----~v~~~d--~~l~~~l~~A~~~g~pV~~Ha~~~~---------~~~L~~~----~--~aGv~~-- 240 (608)
T 3nqb_A 185 -IGGIAEIMNMR----GVIERD--PRMSGIVQAGLAAEKLVCGHARGLK---------NADLNAF----M--AAGVSS-- 240 (608)
T ss_dssp -EEEEEEECCHH----HHHTTC--HHHHHHHHHHHHHTCEEEECCTTCC---------HHHHHHH----H--HTTCCE--
T ss_pred -cceeeEeeccC----CcCCCc--HHHHHHHHHHHHcCCEEEEcCCCCC---------HHHHHHH----H--HcCCCe--
Confidence 56999988542 111234 7789999999999999999999642 1122221 1 245553
Q ss_pred EecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH----cCCCCeEEe
Q 020186 156 EHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT----SGSRKFFLG 229 (329)
Q Consensus 156 ~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~----~G~Id~~i~ 229 (329)
+|.+ ..++++.++. .++... . + ....+.+.|.+++. .|.-- +++
T Consensus 241 ~H~~~~~eea~e~l~~----G~~i~i-------~---------g---------s~~~~~~~l~~~i~~~~~~g~~v-~lg 290 (608)
T 3nqb_A 241 DHELVSGEDLMAKLRA----GLTIEL-------R---------G---------SHDHLLPEFVAALNTLGHLPQTV-TLC 290 (608)
T ss_dssp ECCCCSHHHHHHHHHT----TCEEEE-------E---------S---------SSGGGHHHHHHHHHHHTSCCTTE-EEE
T ss_pred eeccCCHHHHHHHHHC----CCEEEE-------e---------c---------cccccHHHHHHHHHhHhhcCceE-EEe
Confidence 6744 3555555542 112211 0 0 01223455666665 56654 999
Q ss_pred cCCCCCCcCcccccCCcCCccchhHHHHHHHH-HHHhcCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe
Q 020186 230 TDSAPHERGRKECACGCAGIYNAPVALSLYAK-VFEEMGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK 297 (329)
Q Consensus 230 SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~-~~~~~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~ 297 (329)
||..+ |....+-. .++..+. .....++++++++..+.|||++||++ .| +|||++++
T Consensus 291 TD~~~--------p~~~~~~g----~l~~~v~~~~~~Gls~~eal~~aT~n~A~~lgl~~~G~i~~G~~ADlvv~d 354 (608)
T 3nqb_A 291 TDDVF--------PDDLLQGG----GLDDVVRRLVRYGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIVVFE 354 (608)
T ss_dssp CBSCC--------HHHHHHTC----SHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHTCTTSSCCSTTSBCCEEEES
T ss_pred cCCCC--------Ccchhhhc----chHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcCcCCCCCccEEEEC
Confidence 99631 10000101 1233222 22347899999999999999999994 23 79999994
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=97.32 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=109.5
Q ss_pred hcCceeEEEEeeccccccC----CCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 020186 73 KTGVVFAVKLYPAGATTNS----QDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRL 148 (329)
Q Consensus 73 ~~G~v~~~K~f~~~~~~~~----~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~ 148 (329)
+.|. ..+|+|+.++.... +....+. +.+.++++.+++.|.++.+|++.. ..+...+ .
T Consensus 187 ~~g~-~~ik~~~~g~~~~~~~~~g~~~~~~-~~l~~~~~~A~~~g~~v~~H~~~~-----------~~i~~~~--~---- 247 (418)
T 2qs8_A 187 KDGA-DGIKITVTGGVLSVAKSGQNPQFTQ-EEVDAVVSAAKDYGMWVAVHAHGA-----------EGMKRAI--K---- 247 (418)
T ss_dssp HHTC-SEEEEECBCCSSSSSSCSSCBCSCH-HHHHHHHHHHHHTTCEEEEEECSH-----------HHHHHHH--H----
T ss_pred HcCC-CEEEEEecCCCCCCCCCCCcccCCH-HHHHHHHHHHHHcCCEEEEEECCH-----------HHHHHHH--H----
Confidence 3463 47899975421100 1122234 789999999999999999999843 1233333 2
Q ss_pred CCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCC-h-------hhHHHHHHH
Q 020186 149 PQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKR-E-------IHRQAVVSA 218 (329)
Q Consensus 149 ~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~-~-------~dr~aLw~a 218 (329)
.|.. .|.|.. +.+.++.+++. .+. +||.++.++... .. + ..+..||.+. + .+...+++.
T Consensus 248 ~g~~-~i~H~~~~~~~~i~~l~~~---gv~--v~p~~~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (418)
T 2qs8_A 248 AGVD-SIEHGTFMDLEAMDLMIEN---GTY--YVPTISAGEFVA-EK---S-KIDNFFPEIVRPKAASVGPQISDTFRKA 316 (418)
T ss_dssp HTCS-EEEECTTCCHHHHHHHHHH---TCE--EECCHHHHHHHH-HH---T-TSTTSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-EEEECCCCCHHHHHHHHHC---CCE--EeeeechHHHhh-hh---c-cccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333 355654 57788887763 333 578866543211 00 1 1123477654 2 224568889
Q ss_pred HHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC-C-C------c
Q 020186 219 VTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP-R-N------T 290 (329)
Q Consensus 219 l~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~-~-~------d 290 (329)
+..|... +++||+ |.. +. +-...| +.++ ...++++++++++.+.|||+++|++ + | +
T Consensus 317 ~~~Gv~v-~~gTD~-~~~------~~---~~~~~e--~~~~---~~~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ 380 (418)
T 2qs8_A 317 YEKGVKI-AFGTDA-GVQ------KH---GTNWKE--FVYM---VENGMPAMKAIQSATMETAKLLRIEDKLGSIESGKL 380 (418)
T ss_dssp HHHTCCB-CCCCCB-TTB------CT---TCTTHH--HHHH---HHTTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSB
T ss_pred HHCCCEE-EEeCCC-CcC------Cc---chHHHH--HHHH---HHcCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCc
Confidence 9999987 999998 321 11 111111 2221 2347899999999999999999994 2 3 7
Q ss_pred ccEEEEe
Q 020186 291 SKIKLTK 297 (329)
Q Consensus 291 ADlvi~~ 297 (329)
|||+|+|
T Consensus 381 ADlvvld 387 (418)
T 2qs8_A 381 ADLIAVK 387 (418)
T ss_dssp CCEEEES
T ss_pred cCEEEEC
Confidence 9999994
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.8e-09 Score=99.46 Aligned_cols=188 Identities=12% Similarity=0.212 Sum_probs=111.0
Q ss_pred HHHHHHhcCceeEEEEeeccccccCC-----CCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHH
Q 020186 67 EIKLARKTGVVFAVKLYPAGATTNSQ-----DGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTIL 141 (329)
Q Consensus 67 el~~l~~~G~v~~~K~f~~~~~~~~~-----~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~ 141 (329)
.+.++.+.|+ ..+|+|+.++..... ..+ +. +.+.++++.+++.|.++.+|+... .++.+.+
T Consensus 180 ~v~~~~~~g~-~~ik~~~~G~~~~~~~p~~~~~~-~~-e~l~~~~~~A~~~g~~v~~H~~~~-----------~~i~~al 245 (426)
T 2r8c_A 180 AVREELQMGA-DQIKIMASGGVASPTDPVGVFGY-SE-DEIRAIVAEAQGRGTYVLAHAYTP-----------AAIARAV 245 (426)
T ss_dssp HHHHHHHHTC-SSEEEECBCCSSSSSCCSSCBCS-CH-HHHHHHHHHHHHTTCCEEEEECSH-----------HHHHHHH
T ss_pred HHHHHHHcCC-CEEEEEecCCCCCCCCCcccccC-CH-HHHHHHHHHHHHcCCEEEEEeCCh-----------HHHHHHH
Confidence 3555666784 589999865322110 123 33 789999999999999999999843 1343333
Q ss_pred HHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCC--hhhHHHHHH
Q 020186 142 QPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKR--EIHRQAVVS 217 (329)
Q Consensus 142 ~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~--~~dr~aLw~ 217 (329)
..|.. .|.|.. +.+.++.+++.. ..+.....+++.++...+.. ...+. .+-.++. ......+.+
T Consensus 246 ------~~G~~-~i~H~~~~~~~~~~~~~~~g-v~~~pt~~~~~~~~~~~~~~--~~~p~--~~~~~~~~~~~~~~~~~~ 313 (426)
T 2r8c_A 246 ------RCGVR-TIEHGNLIDDETARLVAEHG-AYVVPTLVTYDALASEGEKY--GLPPE--SIAKIADVHGAGLHSIEI 313 (426)
T ss_dssp ------HTTCS-EEEECTTCCHHHHHHHHHTT-CEEECCTHHHHHHHHHTTTT--TCCHH--HHTTSTTTGGGHHHHHHH
T ss_pred ------HcCCC-EEecCCcCCHHHHHHHHHcC-CeEeechHHHHHHhhhcccc--CCCHH--HHHHHHHHHHHHHHHHHH
Confidence 13554 377766 577777776543 33333333554444322210 00000 0111222 123445667
Q ss_pred HHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC--C------
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR--N------ 289 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~--~------ 289 (329)
.+..|..- +++||+.+.. .+....|. ....+.++++++++..+.|||+++|++. |
T Consensus 314 ~~~~Gv~v-~lgTD~~~~~----------~~~~~~e~------~~~~~~l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~ 376 (426)
T 2r8c_A 314 MKRAGVKM-GFGTDLLGEA----------QRLQSDEF------RILAEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGA 376 (426)
T ss_dssp HHHTTCEE-CCCCCCCGGG----------GGGTTHHH------HHHTTTSCHHHHHHHTTHHHHHHTTCTTTSSSCCTTS
T ss_pred HHHcCCeE-EEecCCCCCC----------CcchHHHH------HHHHhcCCHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 77888876 8999985211 11111121 1223458999999999999999999942 3
Q ss_pred cccEEEEe
Q 020186 290 TSKIKLTK 297 (329)
Q Consensus 290 dADlvi~~ 297 (329)
.|||+|+|
T Consensus 377 ~ADlvvld 384 (426)
T 2r8c_A 377 HADVLVVD 384 (426)
T ss_dssp BCCEEEES
T ss_pred cCCEEEEC
Confidence 79999994
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-08 Score=95.21 Aligned_cols=153 Identities=10% Similarity=0.009 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHH-HHHHHHHHHHHHHhcCC--CeEEEEecCCH---------HHHHHH
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE-KVFIDTILQPLIQRLPQ--LKVVMEHITTM---------DAVKFV 167 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E-~~av~~~~~~~la~~~~--~~lhi~HvSt~---------~sl~~i 167 (329)
+.+.++++.+++.|.++.+|+.... .| ..++...+ ..++..| .+..+.|.... +.++.+
T Consensus 198 ~~l~~~~~~A~~~g~~v~~H~~~~~-------~~~~~~~~~~~--~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l 268 (403)
T 2qt3_A 198 GSLDLCFKLAKEYDVDIDYHIHDIG-------TVGVYSINRLA--QKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLY 268 (403)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCH-------HHHHHHHHHHH--HHHHHTTCTTSEEEEECTHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCcc-------cchhHHHHHHH--HHHHHcCCCCCeEEEehhhhccCChhhHHHHHHHH
Confidence 6788999999999999999987541 11 12233333 3333344 47889998753 445555
Q ss_pred HcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcC
Q 020186 168 ESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247 (329)
Q Consensus 168 ~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~ 247 (329)
++ ..+.+..|| |++.. ...+++.+..|... +++||+..+ ++.+.
T Consensus 269 ~~---~g~~v~~~p-----------------------~~~~~--~~~~~~~~~~Gv~v-~lgtD~~~~-------~~~~~ 312 (403)
T 2qt3_A 269 KD---SGMKFVTCF-----------------------SSTPP--TMPVIKLLEAGINL-GCASDNIRD-------FWVPF 312 (403)
T ss_dssp HH---HTCEEEEET-----------------------TTCCT--TCCHHHHHHTTCEE-EEECCSCSS-------SSCSC
T ss_pred HH---cCCEEEECC-----------------------CCCCC--CCCHHHHHHcCCcE-EEeCCCCCC-------CCCCC
Confidence 43 234444555 33322 12356677789886 999999632 11112
Q ss_pred Cccch-hHH-HHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 248 GIYNA-PVA-LSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 248 Gi~~~-e~~-lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
|...+ +.+ +......+...++++++++.++.|||+.||++. | +|||+|+|
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~g~i~~G~~ADlvv~d 371 (403)
T 2qt3_A 313 GNGDMVQGALIETQRLELKTNRDLGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLN 371 (403)
T ss_dssp CCCCHHHHHHHHHHHTTCCSHHHHHHHHHHTTHHHHHHHTCGGGCSSSTTSBCCEEEES
T ss_pred CCCCHHHHHHHHHHHhCcCCccCHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCEEEEc
Confidence 33222 211 111111111135889999999999999999842 3 79999994
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-08 Score=89.76 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC---CeEEEEecCCHHHHHHHHcccC--Cc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ---LKVVMEHITTMDAVKFVESCKE--GF 174 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~---~~lhi~HvSt~~sl~~i~~ak~--~~ 174 (329)
..+.+.++.++++|.+|++|+++... +. +.+ .+.+..| .+++|.|.+...+++.++++.+ ..
T Consensus 138 ~~~~~~~~~a~~~~~pv~iH~~~~~~------~~-----~~~--~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~ 204 (291)
T 1bf6_A 138 KVFIAAALAHNQTGRPISTHTSFSTM------GL-----EQL--ALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY 204 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCS------HH-----HHH--HHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCCC------hH-----HHH--HHHHHcCCCchhEEEECCCCCCCHHHHHHHHHCCCE
Confidence 45777899999999999999986421 11 222 2233333 5789999965444555554432 44
Q ss_pred eEEEecchhhhcchhhhcCCCCCCceEE-cCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcCCccch
Q 020186 175 VAATVTPQHLVLNRNALFQGGLRPHNYC-LPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCAGIYNA 252 (329)
Q Consensus 175 vt~Et~phhL~l~~~~~~~~~~~~~~k~-~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~~ 252 (329)
|+++++. ++ .|| ...+.+.+++.++.|.+| ++++||. |+....+ + .+| .+.
T Consensus 205 i~~~~~~-------------------~~~~~~--~~~~~~~~~~~~~~~~~dril~~TD~-p~~~~~~--~--~~~-~~~ 257 (291)
T 1bf6_A 205 VQFDTIG-------------------KNSYYP--DEKRIAMLHALRDRGLLNRVMLSMDI-TRRSHLK--A--NGG-YGY 257 (291)
T ss_dssp EEECCTT-------------------CTTTSC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSG--G--GTS-CCT
T ss_pred EEEccCc-------------------ccCCCC--HHHHHHHHHHHHHhCCCCeEEEcCCC-CCCccch--h--cCC-CCH
Confidence 4444321 11 133 345677899999998777 1347875 4421111 1 123 444
Q ss_pred hHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcC
Q 020186 253 PVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 253 e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifg 285 (329)
+..++.++..+. +.++.+++.++++.||+|+||
T Consensus 258 ~~~~~~~~~~l~~~g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 258 DYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp THHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHhC
Confidence 445555554443 467999999999999999996
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-08 Score=91.78 Aligned_cols=146 Identities=12% Similarity=-0.010 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC--eEEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL--KVVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~--~lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
+.+.++++.+++.|.++.+|+...... + .+.. +...|. -.|..|+ +.+.++.+++. .+++
T Consensus 223 ~~~~~~~~~a~~~g~~v~~H~~~~~~~------~--~~~~------~~~~g~~~~~H~~~~-~~~~~~~~~~~---g~~~ 284 (416)
T 2q09_A 223 AQTEQVYLAADQYGLAVKGHMDQLSNL------G--GSTL------AANFGALSVDHLEYL-DPEGIQALAHR---GVVA 284 (416)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSCCC------S--HHHH------HHHTTCSEEEECTTC-CHHHHHHHHHH---TCEE
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCch------H--HHHH------HHHcCCCEEeecccC-CHHHHHHHHHc---CCeE
Confidence 789999999999999999998754210 0 1211 112233 3455554 46777777653 5788
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
.+||.+.+.. . + .-.|| +++.+..|... +++|||.|++. + ... ++.
T Consensus 285 ~~~p~~~~~~-----~---~---~~~~~---------~~~~~~~Gv~~-~~gtD~~~~~~---------~-~~~---~~~ 330 (416)
T 2q09_A 285 TLLPTAFYFL-----K---E---TKLPP---------VVALRKAGVPM-AVSSDINPGTA---------P-IVS---LRM 330 (416)
T ss_dssp EECHHHHHHT-----T---C---CCCCC---------HHHHHHTTCCE-EECCCCBTTTB---------C-CCC---HHH
T ss_pred EEcCccHHhh-----c---c---ccccC---------HHHHHHCCCeE-EEecCCCCccC---------C-CCC---HHH
Confidence 8999875421 0 1 01244 44677889998 99999976531 0 111 333
Q ss_pred HHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 258 LYAKVF-EEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 258 ll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
.+...+ ..++++++++++++.|||+++|++. | +|||+|+|
T Consensus 331 ~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld 379 (416)
T 2q09_A 331 AMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWN 379 (416)
T ss_dssp HHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEES
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEEEC
Confidence 333333 3579999999999999999999942 3 79999994
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-07 Score=89.75 Aligned_cols=156 Identities=12% Similarity=0.016 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH----HHH-HHHHhcCCCeEEEEecC--CHHHHHHHHcccC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT----ILQ-PLIQRLPQLKVVMEHIT--TMDAVKFVESCKE 172 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~----~~~-~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~ 172 (329)
+.+.++++.+++.|.++.+|+.... .|.....+ .+. ..-....+.+..+.|.. +.+.++.+++.
T Consensus 219 ~~l~~~~~~a~~~g~~v~~H~~e~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~H~~~~~~~~~~~l~~~-- 289 (456)
T 3ls9_A 219 ELFEAFAQMAADYDVRLHTHFYEPL-------DAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADA-- 289 (456)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCTT-------HHHHHHHHHSSCHHHHHHHTTCSSTTEEEEECCSCCGGGHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCc-------hHHHHHHHhCCCHHHHHHHcCCCCCCcEEEeccCCCHHHHHHHHHc--
Confidence 7899999999999999999996542 11111110 010 01122234566666654 45667777653
Q ss_pred CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccch
Q 020186 173 GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA 252 (329)
Q Consensus 173 ~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~ 252 (329)
.+.+.+||..-.. + +.+ .+| +.+.+..|... +++||+.+... +..-.
T Consensus 290 -g~~~~~~p~s~~~----l---~~~-----~~~---------~~~~~~~Gv~v-~lgtD~~~~~~----------~~~~~ 336 (456)
T 3ls9_A 290 -GVAIAHLIAPDLR----M---GWG-----LAP---------IREYLDAGITV-GFGTTGSASND----------GGNLL 336 (456)
T ss_dssp -TCEEEECHHHHHH----T---TCC-----CCC---------HHHHHHTTCEE-EECCCCTTSSC----------CCCHH
T ss_pred -CCEEEEChhHHhh----c---CCC-----cch---------HHHHHHCCCcE-EEECCCCccCC----------CCCHH
Confidence 5788899975321 1 111 123 34556779987 99999975321 11111
Q ss_pred -hHHHHHHHHHHH--h----cCCHHHHHHHHhhhhhhhcCCC-CC------cccEEEEe
Q 020186 253 -PVALSLYAKVFE--E----MGALDKLEAFTSFNGPDFYGLP-RN------TSKIKLTK 297 (329)
Q Consensus 253 -e~~lpll~~~~~--~----~~~l~~~v~~~s~nPAkifgl~-~~------dADlvi~~ 297 (329)
|..+.+.+.... . .+++++++++.+.|||+++|++ .| .|||+|+|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d 395 (456)
T 3ls9_A 337 GDLRLAALAHRPADPNEPEKWLSARELLRMATRGSAECLGRPDLGVLEEGRAADIACWR 395 (456)
T ss_dssp HHHHHHHHHTGGGSTTCGGGSCCHHHHHHHTTHHHHHHTTCTTSSCCSTTSBCCEEEEE
T ss_pred HHHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEe
Confidence 112222111111 1 6899999999999999999985 34 79999994
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=96.03 Aligned_cols=185 Identities=11% Similarity=0.117 Sum_probs=107.4
Q ss_pred HHHHHHhcCceeEEEEeeccccccC----CCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHH
Q 020186 67 EIKLARKTGVVFAVKLYPAGATTNS----QDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQ 142 (329)
Q Consensus 67 el~~l~~~G~v~~~K~f~~~~~~~~----~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~ 142 (329)
.+.++.+.|+ ..+|+|..+..... +....+. +.+.++++.+++.|.++.+|+... .++.+.+
T Consensus 177 ~v~~~~~~g~-~~ik~~~~g~~~~~~~p~~~~~~~~-e~l~~~~~~A~~~g~~v~~H~~~~-----------~~i~~~l- 242 (423)
T 3feq_A 177 AVREEIQKGA-TQIKIMASGGVASPTDPIANTQYSE-DEIRAIVDEAEAANTYVMAHAYTG-----------RAIARAV- 242 (423)
T ss_dssp HHHHHHHTTC-SSEEEECBCCSSSSSCCTTSBCSCH-HHHHHHHHHHHHTTCCEEEEEEEH-----------HHHHHHH-
T ss_pred HHHHHHHcCC-CEEEEeccCCcCCCCCCcccccCCH-HHHHHHHHHHHHCCCeEEEEeCCh-----------HHHHHHH-
Confidence 4555666774 58999986432111 1111233 789999999999999999999843 2344433
Q ss_pred HHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCCh------hhHHH
Q 020186 143 PLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE------IHRQA 214 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~------~dr~a 214 (329)
. .|.. .|.|.. +.+.++.+++.. ..+.-...++..++...+. ..++|..+.+ .....
T Consensus 243 -~----~g~~-~i~H~~~~~~~~~~~l~~~g-v~~~pt~~~~~~~~~~~~~--------~~~~p~~~~~~~~~~~~~~~~ 307 (423)
T 3feq_A 243 -R----CGVR-TIEHGNLVDEAAAKLMHEHG-AFVVPTLVTYDALAKHGAE--------FGMPPESVAKVASVQQKGRES 307 (423)
T ss_dssp -H----HTCC-EEEEEEECCHHHHHHHHHHT-CEEECCTHHHHHHHHHTGG--------GTCCTTTSSTHHHHHHHHHHH
T ss_pred -H----cCCC-EEeccCcCCHHHHHHHHHCC-CccccchHHHHHHHhcccc--------cCCCHHHHHHHHHHHHHHHHH
Confidence 2 2433 244433 677777776543 3332222234333332221 1122332221 12334
Q ss_pred HHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC--C---
Q 020186 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR--N--- 289 (329)
Q Consensus 215 Lw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~--~--- 289 (329)
+...+..|..- +++||+.+. + .|....|. ....+.++++++++.++.|||+++|++. |
T Consensus 308 ~~~l~~~Gv~v-~~gTD~~~~-------~---~~~~~~e~------~~~~~~ls~~eal~~aT~~~A~~lg~~~~~G~i~ 370 (423)
T 3feq_A 308 LEIYANAGVKM-GFGSDLLGE-------M---HAFQSGEF------RIRAEVLGNLEALRSATTVAAEIVNMQGQLGVIA 370 (423)
T ss_dssp HHHHHHHTCCB-CCCCCCCGG-------G---GGGTTHHH------HHHHTTSCHHHHHHTTTHHHHHHTTCBTTBSSCC
T ss_pred HHHHHHCCCEE-EECCCCCCC-------C---CcchHHHH------HHHHhhCCHHHHHHHHHHHHHHHhCCCCCceeEC
Confidence 55667788886 899998521 1 11111121 1223459999999999999999999842 3
Q ss_pred ---cccEEEEe
Q 020186 290 ---TSKIKLTK 297 (329)
Q Consensus 290 ---dADlvi~~ 297 (329)
.|||+|+|
T Consensus 371 ~G~~ADlvv~d 381 (423)
T 3feq_A 371 VGAIADLVVLD 381 (423)
T ss_dssp TTSBCCEEEES
T ss_pred CCCcCCEEEEC
Confidence 79999994
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=90.42 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHH-H----HHH-HHHHhcCCCeEEEEecC--CHHHHHHHHccc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID-T----ILQ-PLIQRLPQLKVVMEHIT--TMDAVKFVESCK 171 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~-~----~~~-~~la~~~~~~lhi~HvS--t~~sl~~i~~ak 171 (329)
+.+.++++.+++.|.++.+|+.+.. .|...+. + .+. ..-....+.+..+.|.. +.+.++.+++
T Consensus 200 ~~l~~~~~~A~~~g~~v~iH~~~~~-------~~~~~~~~~~g~~~i~~~~~~g~~~~~~~~~H~~~~~~~~~~~~~~-- 270 (447)
T 4f0r_A 200 DTFRKVVTLAEQEDMLIHCHIHETA-------DEVNNSVKEHGQRPLARLQRLGLLSPRLVAAHMVHLNDAEVELAAR-- 270 (447)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCCH-------HHHHHHHHHHSSCHHHHHHHHTCCSTTEEEEECCSCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCH-------HHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEeccCCCHHHHHHHHH--
Confidence 7899999999999999999997541 1111110 0 010 01112344566677765 5666666665
Q ss_pred CCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccc
Q 020186 172 EGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYN 251 (329)
Q Consensus 172 ~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~ 251 (329)
..++...||..-+.. +.+ .+| +.+.+..|... +++||+.+.. ++..-
T Consensus 271 -~g~~~~~~p~~~~~~-------~~~-----~~~---------~~~~~~~Gv~v-~lgTD~~~~~----------~~~~~ 317 (447)
T 4f0r_A 271 -HGLSTAHNPASNMKL-------ASG-----ISP---------VSKLMDAGVAV-GIGTDGAASN----------NKLDM 317 (447)
T ss_dssp -HTCEEEECHHHHHHT-------TCC-----CCC---------HHHHHHTTCEE-EECCCCGGGT----------CCCCH
T ss_pred -cCCEEEECchhhhhc-------CCC-----CCc---------HHHHHHCCCcE-EEeCCCCcCC----------CCCCH
Confidence 357788899642210 111 122 56677889887 9999986531 11111
Q ss_pred -hhHHHHHHHHH-HH---hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe--cceeec
Q 020186 252 -APVALSLYAKV-FE---EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK--IPWKVP 303 (329)
Q Consensus 252 -~e~~lpll~~~-~~---~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~--~~~~v~ 303 (329)
.+..+..++.. .. ..+++++++++++.|||++||++. | +|||+|+| ..|.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~ 384 (447)
T 4f0r_A 318 LAETRLAALLAKVGTLDPTSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAP 384 (447)
T ss_dssp HHHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCS
T ss_pred HHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCC
Confidence 12333333322 21 267999999999999999999953 4 79999994 444443
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-07 Score=86.42 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHH-HHH----HHHHHHH---hcCCCeEEEEecC--CHHHHHHHHc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVF-IDT----ILQPLIQ---RLPQLKVVMEHIT--TMDAVKFVES 169 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~a-v~~----~~~~~la---~~~~~~lhi~HvS--t~~sl~~i~~ 169 (329)
+.+.++++.+++.|.++.+|+.... .|... +.+ .+ ... ...+.+..+.|.. +.+.++.+++
T Consensus 227 ~~l~~~~~~A~~~g~~v~~H~~e~~-------~~~~~~~~~~g~~~i--~~~~~~g~l~~~~~~~H~~~~~~~~~~~l~~ 297 (468)
T 3lnp_A 227 EPLKEITMLSDQLDMPVQIHLHETD-------FEVSESLETFNKRPT--QRLADIGFLNERVSCVHMTQVDDGDIKILQK 297 (468)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCSH-------HHHHHHHHHHSSCHH--HHHHHTTCCSTTEEEEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCH-------HHHHHHHHHhCCCHH--HHHHHcCCCCCCeEEEeccCCCHHHHHHHHh
Confidence 7899999999999999999997541 11111 100 01 111 2234566666665 5666777665
Q ss_pred ccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCc
Q 020186 170 CKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249 (329)
Q Consensus 170 ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi 249 (329)
. .+++.+||..-+. + +.+ .+| +.+.+..|... +++||+.+.. .+.
T Consensus 298 ~---g~~v~~~p~s~~~----~---~~~-----~~~---------~~~~~~~Gv~v-~lgtD~~~~~----------~~~ 342 (468)
T 3lnp_A 298 T---GASIIHCPESNLK----L---ASG-----FCP---------IAKLSAANIPL-AIGTDGAASN----------NDL 342 (468)
T ss_dssp H---CCEEEECHHHHHH----T---TCC-----CCC---------HHHHHHTTCCE-EECCCCTTSS----------CCC
T ss_pred c---CCEEEEChhhhhh----c---CCC-----CCC---------HHHHHHCCCeE-EEECCCCcCC----------CCC
Confidence 3 5678889964321 1 111 122 45567789887 9999986531 111
Q ss_pred cch-hHHHHHHHHH-H---HhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 250 YNA-PVALSLYAKV-F---EEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 250 ~~~-e~~lpll~~~-~---~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
.-+ +..+..++.. . ...+++++++++++.|||+.+|++. | +|||+|||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d 403 (468)
T 3lnp_A 343 DMFSETKTAALLAKGVSQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAID 403 (468)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEE
T ss_pred CHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEe
Confidence 111 2233332221 1 1267999999999999999999953 4 79999994
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-07 Score=85.16 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHH-H----HHH-HHHHhcCCCeEEEEecC--CHHHHHHHHccc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID-T----ILQ-PLIQRLPQLKVVMEHIT--TMDAVKFVESCK 171 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~-~----~~~-~~la~~~~~~lhi~HvS--t~~sl~~i~~ak 171 (329)
+.+.++++.+++.|.++.+|+.... .|...+. + .+. ..-....+.+..+.|.. +.+.++.+++
T Consensus 202 ~~l~~~~~~A~~~g~~v~~H~~e~~-------~~~~~~~~~~g~~~i~~~~~~g~~~~~~~~~H~~~~~~~~~~~l~~-- 272 (451)
T 4dyk_A 202 DKLEQILVLTEELDASIQMHVHETA-------FEVEQAMERNGERPLARLHRLGLLGPRFQAVHMTQVDNDDLAMLVE-- 272 (451)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCCH-------HHHHHHHHHHSSCHHHHHHHTTCCSTTEEEEECCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCH-------HHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEECCCCCHHHHHHHHH--
Confidence 7899999999999999999996541 1111110 0 010 01112234566666665 4666776665
Q ss_pred CCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccc
Q 020186 172 EGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYN 251 (329)
Q Consensus 172 ~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~ 251 (329)
..+.+.+||..-+. + +.+ .+| +.+.+..|... +++||+.+.. .+..-
T Consensus 273 -~g~~v~~~p~s~~~----~---~~~-----~~~---------~~~~~~~Gv~v-~lgtD~~~~~----------~~~~~ 319 (451)
T 4dyk_A 273 -TNSSVIHCPESNLK----L---ASG-----FCP---------VEKLWQAGVNV-AIGTDGAASN----------NDLDL 319 (451)
T ss_dssp -HTCEEEECHHHHHH----T---TCC-----CCC---------HHHHHHHTCCE-EECCCCGGGS----------SCCCH
T ss_pred -cCCEEEEChhhhhh----c---cCC-----ccc---------HHHHHhCCCeE-EEECCCCccC----------CCCCH
Confidence 36788889964221 1 111 123 44566779887 9999996521 11111
Q ss_pred h-hHHHHHHHHH-H---HhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 252 A-PVALSLYAKV-F---EEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 252 ~-e~~lpll~~~-~---~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
. +..+..++.. . ...+++++++++++.|||+.+|++. | +|||+|+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d 378 (451)
T 4dyk_A 320 LGETRTAALLAKAVYGQATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFD 378 (451)
T ss_dssp HHHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEe
Confidence 1 2233332222 1 1257999999999999999999943 4 79999994
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-06 Score=83.76 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHH---------HHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHH
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVF---------IDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVE 168 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~a---------v~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~ 168 (329)
+.+.++++.+++.|.++.+|+.... .|... +... .-....+.+..+.|.. +.+.++.++
T Consensus 209 ~~l~~~~~~A~~~g~~v~iH~~e~~-------~~~~~~~~~~g~~~i~~~---~~~g~~~~~~~~~H~~~l~~~~i~~l~ 278 (472)
T 4dzh_A 209 ANFERVRMLADQLDMPVHLHTHETA-------QEVADSVAQYGQRPLARL---DRLGLVNDRLIAVHMTQLTEAEIHLCA 278 (472)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCCH-------HHHHHHHHHHSSCHHHHH---HHHTCCSTTEEEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCH-------HHHHHHHHHhCCCHHHHH---HHcCCCCCCeEEEeccCCCHHHHHHHH
Confidence 7899999999999999999986431 11111 1111 1123345566677765 566677776
Q ss_pred cccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCC
Q 020186 169 SCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAG 248 (329)
Q Consensus 169 ~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~G 248 (329)
+. .+.+.+||..-+. + +.+ .+| +.+.+..|... +++||+.+.. ++
T Consensus 279 ~~---g~~v~~~p~s~~~----~---~~~-----~~~---------~~~~~~~Gv~v-~lgtD~~~~~----------~~ 323 (472)
T 4dzh_A 279 ER---GVSVVHCPESNLK----L---ASG-----FCP---------ACALQRASVNL-AIGTDGCASN----------ND 323 (472)
T ss_dssp HH---TCEEEECHHHHHH----T---TCC-----CCC---------HHHHHHTTCEE-EECCCCTTSS----------CC
T ss_pred Hc---CCEEEEChHHHHh----c---CCC-----Ccc---------HHHHHHCCCCE-EEECCCCcCC----------CC
Confidence 53 5677889864321 1 111 122 55567789887 9999986421 11
Q ss_pred ccch-hHHHHHHHHH-HH---hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 249 IYNA-PVALSLYAKV-FE---EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 249 i~~~-e~~lpll~~~-~~---~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
..-+ +..+...+.. .. ..+++++++++++.|||+.+|++. | +|||+|+|
T Consensus 324 ~~~~~~~~~a~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d 385 (472)
T 4dzh_A 324 LDMFSENRTAAILAKAVANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVD 385 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEE
T ss_pred CCHHHHHHHHHHHhhhhcCCCCcCCHHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEc
Confidence 1111 2222222221 11 258999999999999999999843 4 79999994
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-08 Score=93.85 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHhcCCCe--EEEEecCCHHHHHHHHcccCCceEEEecchhhhcchhhhcCC-CCCCceEEcCC----CCChhhHHHHH
Q 020186 144 LIQRLPQLK--VVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQG-GLRPHNYCLPV----LKREIHRQAVV 216 (329)
Q Consensus 144 ~la~~~~~~--lhi~HvSt~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~-~~~~~~k~~PP----LR~~~dr~aLw 216 (329)
..|+..|.+ +|+.+.+..++++.+.+++ ..++| |++++++++++.- ..|....++|+ +|.. ....+.
T Consensus 242 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~g--~~~~~---H~~~~~~~~~~~~~~~g~~~~~~p~~~~~l~~~-~~~~~~ 315 (419)
T 2puz_A 242 AAAQQRGLPVKLHAEQLSNLGGAELAASYN--ALSAD---HLEYLDETGAKALAKAGTVAVLLPGAFYALREK-QLPPVQ 315 (419)
T ss_dssp HHHHHTTCCBEEEESSSSCCSHHHHHHHTT--CSEEE---ECTTCCHHHHHHHHHHTCEEEECHHHHHHHTCC-CCCCHH
T ss_pred HHHHHCCCcEEEEecccccCCHHHHHHhcC--Cceeh---HhccCCHHHHHHHHHcCCcEEECCchhhhhccc-ccccHH
Confidence 445555543 3333333334455544432 22332 6666666554310 01344555554 3321 001234
Q ss_pred HHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC-C-C-----
Q 020186 217 SAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP-R-N----- 289 (329)
Q Consensus 217 ~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~-~-~----- 289 (329)
..++.|... +++|||.|++. ...++...+... +...++++++++++.+.|||+.+|++ + |
T Consensus 316 ~~~~~Gv~~-~lgsD~~~~~~----------~~~~l~~~~~~~--~~~~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~G 382 (419)
T 2puz_A 316 ALRDAGAEI-ALATDCNPGTS----------PLTSLLLTMNMG--ATLFRMTVEECLTATTRNAAKALGLLAETGTLEAG 382 (419)
T ss_dssp HHHHHTCCE-EECCCCCSSSC----------CBCCHHHHHHHH--HHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTT
T ss_pred HHHHCCCeE-EEECCCCCCCC----------ccccHHHHHHHh--ccccCCCHHHHHHHHHHHHHHHcCCCCCccccCCC
Confidence 455679998 99999976531 112221122211 22358999999999999999999994 2 3
Q ss_pred -cccEEEEe
Q 020186 290 -TSKIKLTK 297 (329)
Q Consensus 290 -dADlvi~~ 297 (329)
+|||+|+|
T Consensus 383 k~ADlvvld 391 (419)
T 2puz_A 383 KSADFAIWD 391 (419)
T ss_dssp SBCCEEEEC
T ss_pred CcCCEEEEC
Confidence 79999995
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.7e-06 Score=81.54 Aligned_cols=230 Identities=15% Similarity=0.084 Sum_probs=130.8
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCc---------e
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGV---------V 77 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~---------v 77 (329)
...++.-|+|+|.||--. .+.++.+.+..++.... +++..+. . ....+++ .+.|. +
T Consensus 228 ~~~~~~~GiTsv~d~~~~------~~~~~~~~~l~~~g~l~-~rv~~~~----~-~~~~~~~---~~~~~~~~~~~~~~~ 292 (534)
T 3icj_A 228 QEHLLSLGVHSVGFMSVG------EKALKALFELEREGRLK-MNVFAYL----S-PELLDKL---EELNLGKFEGRRLRI 292 (534)
T ss_dssp HHHHHHTTEEEEEEEEEC------HHHHHHHHHHHHTTCCC-SEEEEEE----C-GGGHHHH---HHHTCCSEECSSEEE
T ss_pred HHHHHhCCCEEEEeCCCC------HHHHHHHHHHHhCCCCc-EEEEEec----C-HHHHHHH---HHhccccCCCCcEEE
Confidence 445678899999998521 34455555544432111 5655432 2 2223333 33331 4
Q ss_pred eEEEEeecccccc---------------CCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHH
Q 020186 78 FAVKLYPAGATTN---------------SQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQ 142 (329)
Q Consensus 78 ~~~K~f~~~~~~~---------------~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~ 142 (329)
.++|+|..++... .+....+. +.|.++++.+.+.|..+.+||... .++.+.+
T Consensus 293 ~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~-e~l~~~v~~A~~~G~~v~~Ha~gd-----------~ai~~~l- 359 (534)
T 3icj_A 293 WGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNK-DEIVEVIERAKPLGLDVAVHAIGD-----------KAVDVAL- 359 (534)
T ss_dssp EEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCH-HHHHHHHHHHTTTTCEEEEEECSH-----------HHHHHHH-
T ss_pred EeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCH-HHHHHHHHHHHHCCCEEEEEEcCh-----------HHHHHHH-
Confidence 5789997543211 11112234 789999999999999999999732 1333333
Q ss_pred HHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCC-ceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRP-HNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~-~~k~~PPLR~~~dr~aLw~al 219 (329)
..-+..+.+..|.|.+ +++.++.+++ ..+.+.+||.|...+. .+.. ..|. +.+-.+|+| .|++
T Consensus 360 -~a~~~~~~r~~ieH~~~~~~e~i~~la~---~gv~~~~~P~~~~~~~-~~~~-~lg~~r~~~~~p~~------~l~~-- 425 (534)
T 3icj_A 360 -DAFEEAEFSGRIEHASLVRDDQLERIKE---LKVRISAQPHFIVSDW-WIVN-RVGEERAKWAYRLK------TLSS-- 425 (534)
T ss_dssp -HHHHHHTCCCEEEECCBCCHHHHHHHHH---HTCEEEECTTHHHHCT-THHH-HHHHHHGGGBTCHH------HHHH--
T ss_pred -HHHHhccCCCEEEECCCCCHHHHHHHHH---cCCeEEEccccccchh-HHHH-hhCHHHHhccHHHH------HHHH--
Confidence 1112222677788877 6788887775 4678889998876432 1110 0010 011112221 2333
Q ss_pred HcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHH-------HhcCCHHHHHHHHhhhhhhhcCCC-CC--
Q 020186 220 TSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVF-------EEMGALDKLEAFTSFNGPDFYGLP-RN-- 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~-------~~~~~l~~~v~~~s~nPAkifgl~-~~-- 289 (329)
. +-..++||. |.+. .. .+..++..+ ..+++.+++++..+.|+|+.+|++ .|
T Consensus 426 -~--v~valGSD~-p~~~------~~---------p~~~~~~av~r~~~~~~~~ls~~eaL~~~T~~~A~~lg~e~~GsL 486 (534)
T 3icj_A 426 -I--TKLGFSTDS-PIEP------AD---------PWVSIDAAVNRYVVDPGERVSREEALHLYTHGSAQVTLAEDLGKL 486 (534)
T ss_dssp -H--SCEEECCTT-TTSC------CC---------HHHHHHHHHHCCSSCGGGCCCHHHHHHHTTHHHHHHTTCTTCSCC
T ss_pred -h--CCEEeecCC-CCCC------CC---------HHHHHHHHHhccccCcccCCCHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 2 334899997 4321 00 111122111 236899999999999999999874 22
Q ss_pred ----cccEEEEe
Q 020186 290 ----TSKIKLTK 297 (329)
Q Consensus 290 ----dADlvi~~ 297 (329)
.|||+|+|
T Consensus 487 e~Gk~ADlvvld 498 (534)
T 3icj_A 487 ERGFRAEYIILD 498 (534)
T ss_dssp STTSBCCEEEES
T ss_pred CCCCCcCEEEEC
Confidence 79999993
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-05 Score=78.15 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHH-------HHHHHHHHh---cCCCeEEEEecC--CHHHHHHH
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID-------TILQPLIQR---LPQLKVVMEHIT--TMDAVKFV 167 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~-------~~~~~~la~---~~~~~lhi~HvS--t~~sl~~i 167 (329)
+.|.++++.+++.|.++.+|+.... .|...+. +.+ ...+ ..+.+..+.|.. +.+.++++
T Consensus 243 e~l~~~~~~A~~~g~~v~~H~~e~~-------~e~~~~~~~~~~~~~~~--~~~~~~g~l~~~~~~~H~~~l~~~~~~~l 313 (476)
T 4aql_A 243 TLMGELGNIAKTRDLHIQSHISENR-------DEVEAVKNLYPSYKNYT--SVYDKNNLLTNKTVMAHGCYLSAEELNVF 313 (476)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCSH-------HHHHHHHHHCTTSSSHH--HHHHTTTCCSTTEEEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEecCCH-------HHHHHHHHHhCCCCCHH--HHHHHcCCCCCCEEEEeCCCCCHHHHHHH
Confidence 7899999999999999999986431 2222221 111 1122 234567777765 66777877
Q ss_pred HcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcC
Q 020186 168 ESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCA 247 (329)
Q Consensus 168 ~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~ 247 (329)
++. .+....||-.-.. + +.| .+| +.+.+..|..- .++||..+...
T Consensus 314 ~~~---g~~v~~~P~sn~~----l---~~g-----~~p---------~~~~~~~Gv~v-~lGtD~~~~~~---------- 358 (476)
T 4aql_A 314 HER---GASIAHCPNSNLS----L---SSG-----FLN---------VLEVLKHEVKI-GLGTDVAGGYS---------- 358 (476)
T ss_dssp HHH---TCEEEECHHHHHH----T---TCC-----CCC---------HHHHHHTTCEE-EECCCTTTSSC----------
T ss_pred HHc---CCEEEECchhhhh----h---Ccc-----hHH---------HHHHHHCCCcE-EEeCCCCCCCC----------
Confidence 764 5677889964211 1 111 133 33455678776 99999854311
Q ss_pred Cccch-hHHHHHHHH-HHH------hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 248 GIYNA-PVALSLYAK-VFE------EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 248 Gi~~~-e~~lpll~~-~~~------~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
..-+ +....+.+. ... ..+++++++++.+.|||+.+|++. | +|||+|+|
T Consensus 359 -~~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~d 423 (476)
T 4aql_A 359 -YSMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILIN 423 (476)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEC
T ss_pred -CCHHHHHHHHHHHHhhhhcccCCCCcCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEEc
Confidence 1111 112222221 111 267999999999999999999942 3 79999994
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-05 Score=75.61 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHH---------------------HHHHHHHhcCCCeEEEEec
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDT---------------------ILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~---------------------~~~~~la~~~~~~lhi~Hv 158 (329)
+.+.++++.+++.|.++.+|+.... .|...+.+ ... .+....+.+..+.|.
T Consensus 187 e~l~~~~~~A~~~g~~v~~H~~E~~-------~e~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~H~ 258 (427)
T 3v7p_A 187 ILAKRALDIAKKYGSLVSVHFMESR-------AEREWLDKGSGEFAKFFKEFLNQTRPVNDTKS-FLELFKELHTLFVHM 258 (427)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCSH-------HHHHHHHHSCSHHHHHHHHHTCCCSCSSCHHH-HHHTTTTSEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCH-------HHHHHHHHhcCcchhhhhhhccCCCcccCHHH-HHhhhcCCCEEEEEC
Confidence 7889999999999999999975331 12222211 110 122225778888887
Q ss_pred C--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCC
Q 020186 159 T--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHE 236 (329)
Q Consensus 159 S--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~ 236 (329)
. +.+.++.+++ ..+.+..||..-.. + +.+ .||+|.- .|..- +++||..+..
T Consensus 259 ~~~~~~~~~~l~~---~g~~~~~~p~s~~~----~---~~~-----~~~~~~~-----------~Gv~v-~lgtD~~~~~ 311 (427)
T 3v7p_A 259 VWANEEEIQTIAS---YNAHIIHCPISNRL----L---GNG-----VLDLEKI-----------KSIPY-AIATDGLSSN 311 (427)
T ss_dssp TTCCHHHHHHHHH---SEEEEEECHHHHHH----T---TCC-----CCCTTTT-----------TTSCE-EECCCCTTSC
T ss_pred CCCCHHHHHHHHH---cCCEEEECHHHHHH----h---cCC-----CCCHHHH-----------CCCeE-EEeCCCCCCC
Confidence 6 5677777765 47888899964221 1 111 3677654 57776 9999953211
Q ss_pred cCcccccCCcCCccch-hHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCCC------cccEEEE--ecceeecC
Q 020186 237 RGRKECACGCAGIYNA-PVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPRN------TSKIKLT--KIPWKVPE 304 (329)
Q Consensus 237 ~~eK~~~~~~~Gi~~~-e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~--~~~~~v~~ 304 (329)
....-+ |..+.++.... ...+++++++++++.|||+++|++.| .|||+|+ +..|++..
T Consensus 312 ----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~g~l~~G~~Ad~~~~d~~~~~~~~~ 379 (427)
T 3v7p_A 312 ----------YSLNMYEELKAALFVHPNKEATTFAKELIIRATKAGYDALGFEGGEIAVGKDADMQLIDLPEGLTNVE 379 (427)
T ss_dssp ----------SCCCHHHHHHHHHHHSTTSCHHHHHHHHHHHHTHHHHHHHTCSCSSCCTTSBCCEEEEECCTTCCCGG
T ss_pred ----------CCCCHHHHHHHHHHhccCCCcccCHHHHHHHHHHHHHHHhCCCCceeCCCCccCEEEEcCCCccCCCc
Confidence 011111 12222221100 01245789999999999999998543 7999999 46666543
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-05 Score=76.69 Aligned_cols=154 Identities=15% Similarity=0.045 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHH--------HHHHHHHHhcCCCeEEEEecC--CHHHHHHHHc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID--------TILQPLIQRLPQLKVVMEHIT--TMDAVKFVES 169 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~--------~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ 169 (329)
+.+.++++.++ |.++.+|+.... .|...+. ..+ .-....+.+..+.|.. +.+.++.+++
T Consensus 224 ~~l~~~~~~a~--g~~v~~H~~e~~-------~~~~~~~~~~g~~~~~~l--~~~g~l~~~~~~~H~~~~~~~~~~~l~~ 292 (458)
T 4f0l_A 224 DELDSVTQLLP--DAPVHIHVAEQV-------KEVEDCIAWSGKRPVEWL--LDHQDVTARWCLIHATHMSDEETKHMAK 292 (458)
T ss_dssp HHHHHHTTSST--TSCEEEEESCSH-------HHHHHHHHHHSSCHHHHH--HHHSCCCTTEEEEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCEEEEeCCCH-------HHHHHHHHHhCCCHHHHH--HHcCCCCCCeEEEEeccCCHHHHHHHHH
Confidence 67777777776 999999986431 1111111 011 1122356677777775 6777777765
Q ss_pred ccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCc
Q 020186 170 CKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249 (329)
Q Consensus 170 ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi 249 (329)
. .+.+..||..-. .+ +.+ .+| +.+.+..|..- +++||.. ++.
T Consensus 293 ~---g~~~~~~p~s~~----~l---~~~-----~~~---------~~~~~~~Gv~v-~lgtD~~-------------~~~ 334 (458)
T 4f0l_A 293 A---GAIAGLCPVTEA----NL---GDG-----TFN---------ATEFAAAGGKF-GIGSDSN-------------VLI 334 (458)
T ss_dssp H---TCEEEECHHHHH----HT---TCC-----CCC---------HHHHHHTTCEE-EECCBTT-------------SSC
T ss_pred c---CCeEEECccccc----cc---cCC-----Ccc---------HHHHHHCCCeE-EEECCCC-------------CCC
Confidence 3 567888886311 11 111 122 44556678886 9999921 122
Q ss_pred cch-hHHHHHHHHHHHh----------cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe--cceee
Q 020186 250 YNA-PVALSLYAKVFEE----------MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK--IPWKV 302 (329)
Q Consensus 250 ~~~-e~~lpll~~~~~~----------~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~--~~~~v 302 (329)
.-. |.....++..... .+++++++++.+.|||+.+|++.| +|||+|+| ..|.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~~~G~l~~G~~ADlvv~d~~~~~~~ 406 (458)
T 4f0l_A 335 GIGDELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGRPEDGLKKGASADFVSLDVERLPHA 406 (458)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTCTTCSSSTTSBCCEEEEECTTSTTC
T ss_pred CHHHHHHHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCCCCCcCCCCCcCCEEEEeCCCCccC
Confidence 222 2233333322211 378999999999999999998433 79999994 44443
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-05 Score=74.34 Aligned_cols=40 Identities=18% Similarity=-0.097 Sum_probs=30.8
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHh
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILK 43 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~ 43 (329)
-+++.++++|||||++.+++|.|+.+..+.++.+.+..++
T Consensus 81 ~~~~~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~~~~~ 120 (381)
T 3iv8_A 81 DTMHKANLKSGCTSFLPTLITSSDENMRQAIAAAREYQAK 120 (381)
T ss_dssp HHHHHHHHHTTEEEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999886666666666655443
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00023 Score=68.84 Aligned_cols=149 Identities=14% Similarity=0.103 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHH---------HHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHH
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKV---------FIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVE 168 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~---------av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~ 168 (329)
+.+.++++.++ .|.++.+|+-... .|.. .+... .-....+.+..+.|.. +.+.++.++
T Consensus 214 e~l~~~~~~A~-~g~~v~~H~~e~~-------~e~~~~~~~~g~~~v~~l---~~~g~~~~~~~~~H~~~~~~~~i~~la 282 (453)
T 3mdu_A 214 QQIATVLAAGH-DDLPVHIHIAEQQ-------KEVDDCQAWSGRRPLQWL---YENVAVDQRWCLVHATHADPAEVAAMA 282 (453)
T ss_dssp HHHHHHHTSSC-TTSCEEEEESCSH-------HHHHHHHHHHSSCHHHHH---HHHSCCCTTEEEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCCH-------HHHHHHHHHhCCCHHHHH---HHcCCCCCCeEEEEcCCCCHHHHHHHH
Confidence 78888988888 8999999964321 1111 12111 1223456677777765 677888877
Q ss_pred cccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCC
Q 020186 169 SCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAG 248 (329)
Q Consensus 169 ~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~G 248 (329)
+. .+.+..||..-. .+ +.+ .+| +.+.+..|..- .++||. +. +
T Consensus 283 ~~---g~~v~~~P~sn~----~l---g~g-----~~p---------~~~~~~~Gv~v-~lgtD~-~~------------~ 324 (453)
T 3mdu_A 283 RS---GAVAGLCLSTEA----NL---GDG-----IFP---------ATDFLAQGGRL-GIGSDS-HV------------S 324 (453)
T ss_dssp HH---TCEEEECHHHHH----HT---TCC-----CCC---------HHHHHHTTCEE-EECCBT-CS------------C
T ss_pred Hc---CCEEEECchhHh----hc---CCC-----CCC---------HHHHHHCCCEE-EEECCC-CC------------C
Confidence 63 678889996321 11 111 133 33445668775 999993 21 1
Q ss_pred ccch-hHHHHHHHHHH-Hh----------cCCHHHHHHHHhhhhhhhcCCCCC------cccEEEEe
Q 020186 249 IYNA-PVALSLYAKVF-EE----------MGALDKLEAFTSFNGPDFYGLPRN------TSKIKLTK 297 (329)
Q Consensus 249 i~~~-e~~lpll~~~~-~~----------~~~l~~~v~~~s~nPAkifgl~~~------dADlvi~~ 297 (329)
..-. +.....+.... .+ .+++++++++.+.|||+.+|++.| .|||+|+|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~~~G~l~~G~~AD~~~~d 391 (453)
T 3mdu_A 325 LSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQPIGSLAVGRRADLLVLD 391 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTSSCSSCCTTSBCCEEEEC
T ss_pred CCHHHHHHHHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCCCCCccCCCCcCCEEEEe
Confidence 1111 12222221111 11 568999999999999999997433 79999994
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=67.06 Aligned_cols=220 Identities=14% Similarity=0.126 Sum_probs=121.7
Q ss_pred chhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccc
Q 020186 8 PICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGA 87 (329)
Q Consensus 8 ~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~ 87 (329)
+.+..-||+.++.+.......++... .+.+++ .+ =.+...++ +......++|..+.+.| ++|+|++..+
T Consensus 60 ~~~~~~GV~~~V~v~~~~~~~~n~~~----~~~~~~-~p--~r~~g~~~--v~P~~~~~eL~~l~~~g-v~Gi~l~~~~- 128 (294)
T 4i6k_A 60 SHLDEHNFTHGVLVQPSFLGTNNQAM----LNAIQQ-YP--DRLKGIAV--VQHTTTFNELVNLKAQG-IVGVRLNLFG- 128 (294)
T ss_dssp HHHHHTTCCEEEEECCGGGTTCCHHH----HHHHHH-ST--TTEEEEEC--CCTTCCHHHHHHHHTTT-EEEEEEECTT-
T ss_pred HHHHHcCCCeEEEecCcccccchHHH----HHHHHH-CC--CeEEEEEE--eCCcccHHHHHHHHHCC-CcEEEeccCC-
Confidence 34556788887777422222333221 222222 22 12332222 24333467898888888 5699976532
Q ss_pred cccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCH------
Q 020186 88 TTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTM------ 161 (329)
Q Consensus 88 ~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~------ 161 (329)
.+...+.+ ..+.+.++.++++|.++.+|+... . +..+. .+++...+++.|.|.+.+
T Consensus 129 --~~~~~~~~--~~~~~~~~~a~~~glpv~iH~~~~---------~---l~~~~--~~l~~~p~~~Vi~H~g~p~~~~g~ 190 (294)
T 4i6k_A 129 --LNLPALNT--PDWQKFLRNVESLNWQVELHAPPK---------Y---LVQLL--PQLNEYSFDVVIDHFGRVDPVKGI 190 (294)
T ss_dssp --SCCCCSSS--HHHHHHHHHHHHTTCEEEEECCHH---------H---HHHHH--HHHTTSSSCEEESGGGCCCTTTCT
T ss_pred --CCCCCccc--HHHHHHHHHHHHcCCEEEEeeCcc---------h---HHHHH--HHHHHCCCCEEEECCCCCCCCCCC
Confidence 11112445 789999999999999999998743 1 22223 334444599999999863
Q ss_pred --HHHHHHHc-ccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHH---HHHHHHcCCCCeEEecCCCCC
Q 020186 162 --DAVKFVES-CKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQA---VVSAVTSGSRKFFLGTDSAPH 235 (329)
Q Consensus 162 --~sl~~i~~-ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~a---Lw~al~~G~Id~~i~SDHaPh 235 (329)
+..+.+.+ ++..++++.++--+.+-+ . + .|+ ..+.+. +++.+--..| +++||- |+
T Consensus 191 ~~~~~~~~~~l~~~~nv~~k~Sg~~~~~~-~-------~-----~~~---~~~~~~l~~~~~~~g~dRl--l~gSD~-P~ 251 (294)
T 4i6k_A 191 EDPDYQKFLSLLNVKQHWIKVSGFYRLGA-T-------P-----SNI---NIAQQAYNIFKEKGFLHKL--IWGSDW-PH 251 (294)
T ss_dssp TCHHHHHHHHHCCTTTEEEECCCGGGSSS-T-------T-----HHH---HHHHHHHHHHHHHTCGGGE--ECCCCB-TC
T ss_pred CCHHHHHHHHHHhCCCEEEEecccccccc-c-------C-----CCc---hhhHHHHHHHHHHhCcccE--EEeCCC-CC
Confidence 13333332 221478888764322110 0 0 010 122333 3343434454 789994 77
Q ss_pred CcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCC
Q 020186 236 ERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 236 ~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~ 287 (329)
..-. |.++ ... +++.+.+ .++.+..-+++..|++|+||++
T Consensus 252 ~~~~--------~~~~---y~~-~~~~l~~~~~~~~~~~~i~~~NA~rl~~l~ 292 (294)
T 4i6k_A 252 TQHE--------SLIT---YED-AIKAFKQIVFDKHEQCLILNQNPTELFGFS 292 (294)
T ss_dssp TTCT--------TTCC---HHH-HHHHHHHHCCCHHHHHHHHTHHHHHHHTC-
T ss_pred CCCc--------CCCC---HHH-HHHHHHHHCCCHHHHHHHHHHCHHHHhCCC
Confidence 6432 2222 112 2232222 4788999999999999999984
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=98.06 E-value=8.7e-05 Score=67.22 Aligned_cols=219 Identities=16% Similarity=0.183 Sum_probs=121.4
Q ss_pred hcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeeccccc
Q 020186 10 CSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAGATT 89 (329)
Q Consensus 10 Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~~~~ 89 (329)
+...||+..+.++......++...+ +.+++ .+ -.+...+++ ......++|+.+.+.| +.|+|+.+.+.
T Consensus 49 m~~~GV~~~v~~~~~~~~~~n~~~~----~~~~~-~p--~r~~~~~~v--~p~~~~~el~~~~~~g-~~Gi~~~~~~~-- 116 (288)
T 2ffi_A 49 LRAHGFSHGVLVQPSFLGTDNRYLL----SALQT-VP--GQLRGVVML--ERDVEQATLAEMARLG-VRGVRLNLMGQ-- 116 (288)
T ss_dssp HHHTSCCEECCBCCGGGTTCCHHHH----HHHHH-ST--TTBCCBBCC--CSSCCHHHHHHHHTTT-CCEEECCCSSS--
T ss_pred HHHhCCCeEEEECCccccccHHHHH----HHHHH-CC--CCEEEEEEe--CCCCCHHHHHHHHHCC-CeEEEEecccC--
Confidence 4457888777765211123343322 22222 22 113222232 3333357899888888 46999877531
Q ss_pred cCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHH------
Q 020186 90 NSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDA------ 163 (329)
Q Consensus 90 ~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~s------ 163 (329)
++..+.+ ..+.+.++.++++|.+|.+|+.+... ..+.. .+.++. .++.+.|...+..
T Consensus 117 -~~~~~~~--~~~~~~~~~a~~~~lpv~iH~~~~~~---------~~~~~----~~~~~p-l~~vi~H~g~~~~~~~~~~ 179 (288)
T 2ffi_A 117 -DMPDLTG--AQWRPLLERIGEQGWHVELHRQVADI---------PVLVR----ALQPYG-LDIVIDHFGRPDARRGLGQ 179 (288)
T ss_dssp -CCCCTTS--TTTHHHHHHHHHHTCEEEECSCTTTH---------HHHHH----HHTTTT-CCEEESGGGSCCTTSCTTC
T ss_pred -CCCCccc--HHHHHHHHHHHHCCCeEEEeechhhH---------HHHHH----HHHHCC-CCEEEECCCCCCCCCCCCC
Confidence 1223444 67889999999999999999986521 12222 234455 9999999987542
Q ss_pred --HHHHHcccC-CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH---cCCCCeEEecCCCCCCc
Q 020186 164 --VKFVESCKE-GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT---SGSRKFFLGTDSAPHER 237 (329)
Q Consensus 164 --l~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~---~G~Id~~i~SDHaPh~~ 237 (329)
.+.+++..+ .+++++++..+.......+ | ....++.+-+.+. .+.| +++||. ||..
T Consensus 180 ~~~~~~~~l~~~~n~y~~~sg~~~~~~~~~~------------~---~~~~~~~~~~~~~~~g~drl--l~gSD~-P~~~ 241 (288)
T 2ffi_A 180 PGFAELLTLSGRGKVWVKVSGIYRLQGSPEE------------N---LAFARQALCALEAHYGAERL--MWGSDW-PHTQ 241 (288)
T ss_dssp TTHHHHTTCCCCSCEEEEEECGGGSSSCHHH------------H---HHHHHHHHHHHHHHTCGGGE--EEECCT-TCTT
T ss_pred hhHHHHHHHHhCCCEEEEeCcchhhccccCC------------C---HHHHHHHHHHHHHHhCCCce--EEecCC-CCCC
Confidence 344444333 4677777653321100000 0 0112233333333 3454 889996 8853
Q ss_pred CcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCC
Q 020186 238 GRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 238 ~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.+ +.++ ++-.++.+.+ .++.+..-+++..|++|+||++
T Consensus 242 ~~--------~~~~----~~~~~~~~~~~~~~~~~~~~i~~~NA~rl~~l~ 280 (288)
T 2ffi_A 242 HE--------SEVS----FGSAVEQFEALGCSAQLRQALLLDTARALFGFE 280 (288)
T ss_dssp CT--------TTCC----HHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCC
T ss_pred CC--------CCCC----HHHHHHHHHHHCCCHHHHHHHHHHCHHHHhCcc
Confidence 21 1122 1222233332 4588999999999999999985
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=76.56 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=91.8
Q ss_pred HHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHH-HHHHHHcccCCceEEEec
Q 020186 102 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMD-AVKFVESCKEGFVAATVT 180 (329)
Q Consensus 102 l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~-sl~~i~~ak~~~vt~Et~ 180 (329)
..+.|+.+.+.|.++.+|+...+ .+.+.+ .+++..|.++.|.|..... .++.+++ ..+.+.+|
T Consensus 209 ~~e~l~~~~~~~~~v~iHa~~~~-----------~i~~~~--~~~~~~g~~~~i~H~~~~~~~~~~l~~---~gv~v~~~ 272 (396)
T 3ooq_A 209 KMEVGEMVLRKKIPARMHAHRAD-----------DILTAI--RIAEEFGFNLVIEHGTEAYKISKVLAE---KKIPVVVG 272 (396)
T ss_dssp HHHHHHHHHTTSSCEEEEECSHH-----------HHHHHH--HHHHHHTCCEEEEECTTGGGGHHHHHH---HTCCEEEC
T ss_pred hHHHHHHHHcCCCcEEEEECchh-----------HHHHHH--HHHHHcCCCEEEecCchHHHHHHHHHH---CCCCEEEC
Confidence 44566666788999999997541 233444 5566678999999998533 2333333 45677888
Q ss_pred chhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHH
Q 020186 181 PQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYA 260 (329)
Q Consensus 181 phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~ 260 (329)
|.+.+.+.... |. .....+...+..|..- +++||+ |... .+ .+...+
T Consensus 273 P~~~~~~~~~~---------------~~-~~~~~~~~l~~~Gv~v-~lgtD~-~~~~---------~~------~l~~~~ 319 (396)
T 3ooq_A 273 PLLTFRTKLEL---------------KD-LTMETIAKLLKDGVLI-ALMCDH-PVIP---------LE------FATVQA 319 (396)
T ss_dssp CCSSCCCSGGG---------------TT-CCTTHHHHHHHTTCCE-EECCTT-TTSC---------GG------GHHHHH
T ss_pred cccccccchhH---------------Hh-hhhHHHHHHHHCCCEE-EEEcCC-CccC---------cc------HHHHHH
Confidence 87543221111 10 0111244455668886 999998 3211 01 122222
Q ss_pred HHH-HhcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEe
Q 020186 261 KVF-EEMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTK 297 (329)
Q Consensus 261 ~~~-~~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~ 297 (329)
... ...++++++++.++.|||++||++. | +|||+|+|
T Consensus 320 ~~~~~~gl~~~~al~~~T~n~A~~lg~~~~~G~i~~G~~ADlvv~d 365 (396)
T 3ooq_A 320 ATAMRYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWS 365 (396)
T ss_dssp HHGGGGTCCHHHHHHTTTHHHHHHTTCTTTSSSCCTTSBCCEEEES
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCCCCeeeECCCCcCCEEEEC
Confidence 222 3468999999999999999999942 3 79999994
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00017 Score=66.00 Aligned_cols=221 Identities=14% Similarity=0.122 Sum_probs=123.4
Q ss_pred chhcccCccEEEECCCCCCC---CCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCC---CHHHHHHHHhcCceeEEE
Q 020186 8 PICSVSHYGRAIVMPNLKPP---ITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTT---SPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 8 ~~Aa~GGvTtvidmPnt~p~---~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~---~~~el~~l~~~G~v~~~K 81 (329)
+.+...||+..+.++...+. .++.. ..+.+++ .+ =.|...+++ .... ..+||+.+.+.|+ .|+|
T Consensus 54 ~~md~~GV~~~V~~~~~~~~~~~~~N~~----~~~~~~~-~p--~r~~~~~~v--~p~~~~~a~~eL~~~~~~g~-~Gi~ 123 (291)
T 3irs_A 54 EEMAAAGIEQGVCVGRNSSVLGSVSNAD----VAAVAKA-YP--DKFHPVGSI--EAATRKEAMAQMQEILDLGI-RIVN 123 (291)
T ss_dssp HHHHHTTCCEEEEECCEETTTEECCHHH----HHHHHHH-ST--TTEEEEEEC--CCSSHHHHHHHHHHHHHTTC-CCEE
T ss_pred HHHHHCCCCEEEEcCCCccccccccHHH----HHHHHHH-CC--CcEEEEEec--CccCHHHHHHHHHHHHhCCC-eEEE
Confidence 44566789988888643221 22322 2222322 22 124444443 3221 2457777666784 6999
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTM 161 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~ 161 (329)
+++.+. ..+..++| ..++..++.++++|.+|.+|+.+... .+........+.. .+.++.+.++.+.|...+
T Consensus 124 ~~~~~~--~~~~~~~d--~~~~~~~~~a~e~glpv~iH~~~~~~-~~~~~~~p~~~~~----v~~~~P~l~ivl~H~G~~ 194 (291)
T 3irs_A 124 LEPGVW--ATPMHVDD--RRLYPLYAFCEDNGIPVIMMTGGNAG-PDITYTNPEHIDR----VLGDFPDLTVVSSHGNWP 194 (291)
T ss_dssp ECGGGS--SSCCCTTC--GGGHHHHHHHHHTTCCEEEECSSSCS-SSGGGGCHHHHHH----HHHHCTTCCEEEEGGGTT
T ss_pred EeCCCC--CCCCCCCC--HHHHHHHHHHHHcCCeEEEeCCCCCC-CCCccCCHHHHHH----HHHHCCCCEEEeecCCcc
Confidence 986431 11233445 67899999999999999999987521 1111111122333 345778999999998765
Q ss_pred HHHHHHHcccC-CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcc
Q 020186 162 DAVKFVESCKE-GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK 240 (329)
Q Consensus 162 ~sl~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK 240 (329)
..-+++..+++ .+++++++--. + . .| ..++-..+++.+-.+.| +++||. ||..-.
T Consensus 195 ~~~~~~~l~~~~~nvy~~~Sg~~---~-----------~---~~---~~~~~~~~~~~~g~drl--lfgSD~-P~~~~~- 250 (291)
T 3irs_A 195 WVQEIIHVAFRRPNLYLSPDMYL---Y-----------N---LP---GHADFIQAANSFLADRM--LFGTAY-PMCPLK- 250 (291)
T ss_dssp CHHHHHHHHHHCTTEEEECGGGG---S-----------S---ST---THHHHHHHHTTGGGGTB--CCCCCB-TSSCHH-
T ss_pred cHHHHHHHHhHCCCeEecHHHHh---c-----------c---CC---CHHHHHHHHHHhCcceE--EEecCC-CCCCHH-
Confidence 44444443322 46777654210 0 0 01 01121223344444555 678884 774210
Q ss_pred cccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCCCC
Q 020186 241 ECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 241 ~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
-.++.+.+ .++.+..-+++..|++|+||+++
T Consensus 251 -----------------~~~~~~~~l~l~~e~~~~i~~~NA~rl~~~~~ 282 (291)
T 3irs_A 251 -----------------EYTEWFLTLPIKPDAMEKILHGNAERLLAQAG 282 (291)
T ss_dssp -----------------HHHHHHHTSSCCHHHHHHHHTHHHHHHHHHSC
T ss_pred -----------------HHHHHHHHCCCCHHHHHHHHHHHHHHHhCccc
Confidence 11222333 57889999999999999999954
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0004 Score=61.86 Aligned_cols=142 Identities=17% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC--CeEEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ--LKVVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~--~~lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
..+.+.++.++++|+||++|+.+.. ..+.+++ +..+ .++.+ |.-+.. .+.++++.+..++.
T Consensus 114 ~~f~~~~~~a~~~~~Pv~iH~~~a~----------~~~~~il-----~~~~~~~~~i~-H~~~g~-~~~~~~~~~~g~~i 176 (259)
T 1zzm_A 114 WLLDEQLKLAKRYDLPVILHSRRTH----------DKLAMHL-----KRHDLPRTGVV-HGFSGS-LQQAERFVQLGYKI 176 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCH----------HHHHHHH-----HHHCCTTCEEE-TTCCSC-HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCcEEEEecccH----------HHHHHHH-----HhcCCCCCEEE-EcCCCC-HHHHHHHHHCCCEE
Confidence 5788889999999999999998641 1222222 2222 35544 974321 22222221134555
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
.+++.-. + . +.+.-| .+.+.+-...| +++||. |+..-. ++ .|-.+....++
T Consensus 177 ~~~g~~~-~-----~--------------~~~~~~-~~~~~~~~dri--l~eTD~-P~~~p~---~~--~g~~~~p~~l~ 227 (259)
T 1zzm_A 177 GVGGTIT-Y-----P--------------RASKTR-DVIAKLPLASL--LLETDA-PDMPLN---GF--QGQPNRPEQAA 227 (259)
T ss_dssp EECGGGG-C-----T--------------TTCSHH-HHHHHSCGGGE--EECCCB-TSSCCT---TC--TTSCCCGGGHH
T ss_pred EECceee-c-----c--------------ccHHHH-HHHHhCCHHHE--EEecCC-CCccCC---CC--CCCCCcHHHHH
Confidence 5543211 0 0 111223 33444322343 789996 654221 11 12222222454
Q ss_pred HHHHHH-H-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 258 LYAKVF-E-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 258 ll~~~~-~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.....+ . ..++.+++.+.+..||+|+||+|
T Consensus 228 ~~~~~la~~~g~~~e~~~~~~~~Na~rl~~l~ 259 (259)
T 1zzm_A 228 RVFAVLCELRREPADEIAQALLNNTYTLFNVP 259 (259)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHhCcC
Confidence 444433 2 46799999999999999999985
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=97.72 E-value=4.7e-05 Score=72.62 Aligned_cols=146 Identities=13% Similarity=0.134 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~ 177 (329)
+.+.++++.+++.|.++.+|+-..... + .+.. +...|.. .+.|.. +++.++.+.+. .+.+
T Consensus 230 e~l~~~~~~a~~~g~~v~~H~~~~~~~-~-------~~~~------~~~~g~~-~~~H~~~~~~~~i~~~~~~---g~~~ 291 (421)
T 2bb0_A 230 SQSRRYLQKAAEAGFGLKIHADEIDPL-G-------GAEL------AGKLKAV-SADHLVGTSDEGIKKLAEA---GTIA 291 (421)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSSCC-S-------HHHH------HHHTTCS-EEEECTTCCHHHHHHHHHH---TCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEecccccc-C-------HHHH------HHHcCCc-EEhhhhcCCHHHHHHHHHc---CCeE
Confidence 789999999999999999997432110 1 1111 1112322 244544 67777777654 4677
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
-.||.+.+. + . +.+ .+| ++..+..|... .++||+.|.+. + ... ++-
T Consensus 292 ~~~p~~~~~----l-~-~~~-----~~~---------~~~~~~~Gv~v-~lgtD~~~~~~---------~-~~~---~~~ 337 (421)
T 2bb0_A 292 VLLPGTTFY----L-G-KST-----YAR---------ARAMIDEGVCV-SLATDFNPGSS---------P-TEN---IQL 337 (421)
T ss_dssp EECHHHHHH----T-T-CCC-----CCC---------HHHHHHTTCCE-EECCCBBTTTB---------C-CCC---HHH
T ss_pred EECCchhhh----h-c-ccc-----cch---------HHHHHHCCCeE-EEeCCCCCCCC---------c-ccC---HHH
Confidence 788865321 1 1 001 122 45677889887 99999855210 0 111 222
Q ss_pred HHHHH-HHhcCCHHHHHHHHhhhhhhhcCCC-C-C------cccEEEEe
Q 020186 258 LYAKV-FEEMGALDKLEAFTSFNGPDFYGLP-R-N------TSKIKLTK 297 (329)
Q Consensus 258 ll~~~-~~~~~~l~~~v~~~s~nPAkifgl~-~-~------dADlvi~~ 297 (329)
.+... ...++++++++++.+.|||+.+|+. + | +|||+|+|
T Consensus 338 ~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld 386 (421)
T 2bb0_A 338 IMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQ 386 (421)
T ss_dssp HHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEES
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEEEC
Confidence 22222 2357899999999999999999994 2 3 79999995
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00084 Score=60.80 Aligned_cols=35 Identities=3% Similarity=-0.081 Sum_probs=30.2
Q ss_pred HHhcCCHHHHHHHHhhhhhhhcCC-CC-C------cccEEEEe
Q 020186 263 FEEMGALDKLEAFTSFNGPDFYGL-PR-N------TSKIKLTK 297 (329)
Q Consensus 263 ~~~~~~l~~~v~~~s~nPAkifgl-~~-~------dADlvi~~ 297 (329)
.+..++++++++++|.||||+||+ ++ | +|||||||
T Consensus 335 ~~~gls~~eal~~~T~npA~~lgl~~~~GsI~~G~~ADlvvld 377 (403)
T 3mtw_A 335 VRYGATPLQAIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVA 377 (403)
T ss_dssp HHTTCCHHHHHHHTTHHHHHHHTCTTTSSSCCTTSBCCEEEES
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcceEEEEC
Confidence 345789999999999999999999 33 4 79999995
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0036 Score=55.56 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~ 177 (329)
..+.+.++.++++|.+|.+|+.+.. ..+.+++ .-....+.++.+ |.- +.+.++.+.+ .++++
T Consensus 111 ~~~~~~~~~a~~~~~pv~iH~~~~~----------~~~~~~l--~~~~~p~~~~v~-H~~~~~~~~~~~~~~---~g~~~ 174 (265)
T 1yix_A 111 ESFIHHIQIGRELNKPVIVHTRDAR----------ADTLAIL--REEKVTDCGGVL-HCFTEDRETAGKLLD---LGFYI 174 (265)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH----------HHHHHHH--HHTTGGGTCEEE-TTCCSCHHHHHHHHT---TTCEE
T ss_pred HHHHHHHHHHHHhCCCEEEEecCch----------HHHHHHH--HhcCCCCCCEEE-EcCCCCHHHHHHHHH---CCcEE
Confidence 6788899999999999999998541 1222222 111234567765 874 3333332221 46777
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
++++. +.+ +..+.-..+.+.+-...| +++||. |+....+.. |..+-+ ..++
T Consensus 175 ~~sg~-~~~--------------------~~~~~~~~~~~~~~~drl--l~~TD~-P~~~~~~~~--g~~~~~---~~l~ 225 (265)
T 1yix_A 175 SFSGI-VTF--------------------RNAEQLRDAARYVPLDRL--LVETDS-PYLAPVPHR--GKENQP---AMVR 225 (265)
T ss_dssp EECGG-GGS--------------------TTCHHHHHHHHHSCGGGE--EECCCB-TSCCCTTCT--TSCCCG---GGHH
T ss_pred EECCc-ccc--------------------CchHHHHHHHHhCChHHE--EEecCC-CCCCCcccC--CCCCch---HHHH
Confidence 77652 110 001122234444322343 799996 664322110 111222 1233
Q ss_pred HHHHHH-H-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 258 LYAKVF-E-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 258 ll~~~~-~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
-....+ . ..++.+.+.+++..||+|+||++
T Consensus 226 ~~~~~l~~~~~~~~~~~~~i~~~Na~rl~~l~ 257 (265)
T 1yix_A 226 DVAEYMAVLKGVAVEELAQVTTDNFARLFHID 257 (265)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHhCcC
Confidence 332322 2 36799999999999999999994
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0075 Score=53.89 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=93.3
Q ss_pred HHHHHHH-hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHc-CCcEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 020186 66 DEIKLAR-KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQ-NMPLLVHGEVTDPIVDIFDREKVFIDTILQP 143 (329)
Q Consensus 66 ~el~~l~-~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~-~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~ 143 (329)
++|+.+. +.| +.+++.+.. +. . .+ ..+.+.++.++++ |.+|.+|+..+.. ..+ ...+..
T Consensus 105 ~el~~~~~~~g-~~gi~~~g~----~~--~-~~--~~~~~~~~~a~~~~~lpv~iH~~~~~~----~~~-~~~~~~---- 165 (272)
T 3cjp_A 105 SYIEENIVNNK-LVGIGELTP----AS--G-QI--KSLKPIFKYSMDSGSLPIWIHAFNPLV----LQD-IKEIAE---- 165 (272)
T ss_dssp HHHHHHTTTTT-CSEEEEECC----CT--T-CG--GGGHHHHHHHHHTTCCCEEECCSTTCC----HHH-HHHHHH----
T ss_pred HHHHHHHHhcC-ceEEEecCC----CC--C-cc--HHHHHHHHHHHhccCCcEEEeCCCCCc----ccc-HHHHHH----
Confidence 5666655 356 468887632 11 2 33 6788999999999 9999999986421 001 112222
Q ss_pred HHHhcCCCeEEEEecCCHHHHHHHHcccC-CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcC
Q 020186 144 LIQRLPQLKVVMEHITTMDAVKFVESCKE-GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSG 222 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~sl~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G 222 (329)
.+.++.+.++.++|.....-.+.++.+++ .+++++++.. .. ...-+.+++.+- +
T Consensus 166 ~l~~~p~l~iv~~H~G~~~~~~~~~~~~~~~~~y~~~s~~-----------------------~~-~~~~~~~~~~~~-d 220 (272)
T 3cjp_A 166 LCKAFPKVPVILGHMGGSNWMTAVELAKEIQNLYLDTSAY-----------------------FS-TFVLKIVINELP-L 220 (272)
T ss_dssp HHHHSTTSCEEEGGGGGGGHHHHHHHHHHCTTEEEECTTC-----------------------SC-HHHHHHHHHHST-T
T ss_pred HHHHCCCceEEEECCCCccHHHHHHHHHhCCCEEEEeccc-----------------------cc-HHHHHHHHHhCC-C
Confidence 34566788998999876544333333322 3555555421 11 123345566653 4
Q ss_pred CCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 223 SRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 223 ~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.| +++||. |+..- +.....+ ....++-+..-+++..|++|+||++
T Consensus 221 ri--l~gSD~-P~~~~--------------~~~~~~~---~~~~l~~~~~~~i~~~Na~rl~~l~ 265 (272)
T 3cjp_A 221 KC--IFGTDM-PFGDL--------------QLSIEAI---KKMSNDSYVANAVLGDNISRLLNIE 265 (272)
T ss_dssp TE--ECCCCT-TSSCH--------------HHHHHHH---HHHCSSHHHHHHHHTHHHHHHHTC-
T ss_pred eE--EEeCCC-CCCCh--------------HHHHHHH---HhcCCCHHHHHHHHHHHHHHHhCcc
Confidence 44 789996 76310 0111111 1236788999999999999999995
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0062 Score=53.94 Aligned_cols=143 Identities=10% Similarity=0.055 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcC--CCeEEEEecCCHHHHHHHHcccC-CceE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLP--QLKVVMEHITTMDAVKFVESCKE-GFVA 176 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~--~~~lhi~HvSt~~sl~~i~~ak~-~~vt 176 (329)
..+.+.++.++++|.++.+|+.+.. ..+.++ +.++. +.++. .|.-+. ..+.++++-+ .+++
T Consensus 109 ~~~~~~~~~a~~~~~pv~iH~~~~~----------~~~~~~----l~~~p~~~~~~i-~H~~~g-~~~~~~~~l~~~~~y 172 (265)
T 2gzx_A 109 EVFRKQIALAKRLKLPIIIHNREAT----------QDCIDI----LLEEHAEEVGGI-MHSFSG-SPEIADIVTNKLNFY 172 (265)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH----------HHHHHH----HHHTTGGGTCEE-ETTCCS-CHHHHHHHHHTSCCE
T ss_pred HHHHHHHHHHHHcCCcEEEEecccH----------HHHHHH----HHhcCCCCCcEE-EEcCCC-CHHHHHHHHHHCCce
Confidence 6788999999999999999997541 122222 23333 57774 566532 1222221111 4567
Q ss_pred EEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHH
Q 020186 177 ATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVAL 256 (329)
Q Consensus 177 ~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~l 256 (329)
++++.... + . ..+.-..+++.+-.+.| +++||. |+...... .+.++.+ ..+
T Consensus 173 ~~~sg~~~-~-----~---------------~~~~~~~~i~~~~~dri--l~gSD~-P~~~~~~~--~g~~~~~---~~~ 223 (265)
T 2gzx_A 173 ISLGGPVT-F-----K---------------NAKQPKEVAKHVSMERL--LVETDA-PYLSPHPY--RGKRNEP---ARV 223 (265)
T ss_dssp EEECGGGG-C-----S---------------SCCHHHHHHHHSCTTTE--EECCCT-TSCCCTTC--TTSCCCG---GGH
T ss_pred EEecceee-c-----C---------------CcHHHHHHHHhCChhhE--EEccCC-CCCCCccc--CCCCCCh---HHH
Confidence 76664211 0 0 01122334454423444 899996 66432210 0222222 234
Q ss_pred HHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 257 SLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 257 pll~~~~~--~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+.+...+. ..++.+.+.+++..||+|+||++
T Consensus 224 ~~~~~~l~~~~~~~~~~~~~i~~~Na~rl~~~~ 256 (265)
T 2gzx_A 224 TLVAEQIAELKGLSYEEVCEQTTKNAEKLFNLN 256 (265)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCc
Confidence 44444332 46799999999999999999984
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0082 Score=53.36 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcC---CCeEEEEecCCHHHHHHHHcccCCceE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLP---QLKVVMEHITTMDAVKFVESCKEGFVA 176 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~---~~~lhi~HvSt~~sl~~i~~ak~~~vt 176 (329)
..+.+.++.++++|+||++|+.+. ....+ .+.+.. ..++.+ |.-+. +.+.++++-+..++
T Consensus 112 ~~f~~~l~~a~~~~lpv~iH~~~a-------------~~~~~--~il~~~~~~~~~~v~-H~~~g-~~~~~~~~~~~g~y 174 (264)
T 1xwy_A 112 RAFVAQLRIAADLNMPVFMHCRDA-------------HERFM--TLLEPWLDKLPGAVL-HCFTG-TREEMQACVAHGIY 174 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESC-------------HHHHH--HHHGGGGGGSSCEEE-CSCCC-CHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCcEEEEcCCc-------------hHHHH--HHHHhcCCCCCcEEE-EccCC-CHHHHHHHHHCCeE
Confidence 458888999999999999999753 11122 222332 456644 97332 22333322113566
Q ss_pred EEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHH
Q 020186 177 ATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVAL 256 (329)
Q Consensus 177 ~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~l 256 (329)
+.++.. +. .+ +..+.-..+.+.+-.+.| +++||. |+....+..+ ...|-.+....+
T Consensus 175 i~~~g~-~~----~~---------------~~~~~l~~~~~~~~~drl--l~eTD~-P~~~~~~~~~-~~~g~~n~p~~~ 230 (264)
T 1xwy_A 175 IGITGW-VC----DE---------------RRGLELRELLPLIPAEKL--LIETDA-PYLLPRDLTP-KPSSRRNEPAHL 230 (264)
T ss_dssp EEECGG-GG----CT---------------TTSHHHHHHGGGSCGGGE--EECCCT-TSCCCTTCTT-CCCSSCCCGGGH
T ss_pred EEECcc-cc----CC---------------cCcHHHHHHHHhCCHHHE--EEecCC-CCcCcccccc-ccCCCCCchHHH
Confidence 666532 10 00 011111223332212333 789996 6632110000 011222111234
Q ss_pred HHHHHHH--HhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 257 SLYAKVF--EEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 257 pll~~~~--~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+-....+ ...++.+++.+.+..||+|+||++
T Consensus 231 ~~~~~~~a~~~g~~~e~~~~~~~~Na~rl~~l~ 263 (264)
T 1xwy_A 231 PHILQRIAHWRGEDAAWLAATTDANVKTLFGIA 263 (264)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCcc
Confidence 4333332 247899999999999999999984
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0056 Score=57.88 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhHc-CCcEEEec-CCCCCCCChhHHHHHHHHHHHHHHHHhcCCCe---EEEEecC-CHHHHHHHHcccCC
Q 020186 100 GKCVHVLEEMVEQ-NMPLLVHG-EVTDPIVDIFDREKVFIDTILQPLIQRLPQLK---VVMEHIT-TMDAVKFVESCKEG 173 (329)
Q Consensus 100 ~~l~~~l~~~~~~-~~~v~vHa-Ed~~~~~~~~~~E~~av~~~~~~~la~~~~~~---lhi~HvS-t~~sl~~i~~ak~~ 173 (329)
..+...++.++++ |+||++|+ .+.+. -...+. .+.+.++.+ +.+.|+- +...++..+++-+.
T Consensus 179 ~~f~aq~~~A~~~~glPV~iH~~r~~~a-----------~~e~l~-iL~e~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~ 246 (365)
T 3rhg_A 179 NSLRAAALAQNNNPYASMNIHMPGWQRR-----------GDEVLD-ILLTEMGCDPAKISLAHSDPSGKDIDYQCKMLDR 246 (365)
T ss_dssp HHHHHHHHHHTTCTTCEEEEECCTTSCC-----------HHHHHH-HHTTTTCCCGGGEEESCCGGGTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCCCcC-----------HHHHHH-HHHhccCCCCCceEEecCCCCCCCHHHHHHHHhC
Confidence 5677888899999 99999997 64321 111221 233333544 7788987 43444444433112
Q ss_pred ceEEEecchhhhcchhhhcCCCCCCceEEcCCCCCh-hhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcCCccc
Q 020186 174 FVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE-IHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCAGIYN 251 (329)
Q Consensus 174 ~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~-~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~ 251 (329)
..+.+.+-- .. .-.+. +.. + ..+. +.-+.|.+.++.|-.| ++|+|| +|+....+ ..|.+|
T Consensus 247 G~~I~~~g~--g~-~~tf~----~~~--~---~~~d~~~a~~l~~li~~g~~drilleTD-~p~l~~~~--~~G~~~--- 308 (365)
T 3rhg_A 247 GVWLEFDMI--GL-DISFP----KEG--A---APSVMDTVEAVATLIERGYGNQIVLSHD-VFLKQMWA--KNGGNG--- 308 (365)
T ss_dssp TCEEEECCT--TC-CCBCS----SSC--B---CCCHHHHHHHHHHHHHTTCGGGEEECCC-CCSGGGSG--GGTSCT---
T ss_pred CCEEEecCC--Cc-ccccc----ccc--c---ccchHHHHHHHHHHHHhCCCCcEEEeCC-CCCCCCCC--cCCCCC---
Confidence 333333210 00 00010 000 0 1122 2334677878788655 246777 45522111 112223
Q ss_pred hhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCCC
Q 020186 252 APVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPRN 289 (329)
Q Consensus 252 ~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~~ 289 (329)
....+..+...+ .+.++.+++.+++..||+|+|+++.+
T Consensus 309 ~~~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~l~~~ 347 (365)
T 3rhg_A 309 WGFVPNVFLSLLAQRGIDKTIIDKLCIDNPANLLAAENL 347 (365)
T ss_dssp TTHHHHTHHHHHHHTTCCHHHHHHHTTHHHHHHHHSCCS
T ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCc
Confidence 222333222233 35689999999999999999999654
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0071 Score=55.73 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=100.0
Q ss_pred HHHHHHHHh-cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC--h---hHHH-HHHH
Q 020186 65 PDEIKLARK-TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD--I---FDRE-KVFI 137 (329)
Q Consensus 65 ~~el~~l~~-~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~--~---~~~E-~~av 137 (329)
.+||+.+.+ .| +.|+|+++.. .+..+.| ..+..+++.++++|.+|.+|+.......+ . +..| ..++
T Consensus 113 ~~el~r~~~~~G-~~Gv~l~~~~----~~~~l~d--~~~~p~~~~~~e~g~pv~iH~g~~~~~p~~~~~~~~~~~~~~~~ 185 (312)
T 3ij6_A 113 CKVISSIKDDEN-LVGAQIFTRH----LGKSIAD--KEFRPVLAQAAKLHVPLWMHPVFDARKPDNNLVFSWEYELSQAM 185 (312)
T ss_dssp HHHHHHHHHCTT-EEEEEEESEE----TTEETTS--TTTHHHHHHHHHTTCCEEEECCCCTTSSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CceEeccCCC----CCCCCCC--ccHHHHHHHHHHcCCeEEEcCCCCCCCCCcccccccHHHHHHHH
Confidence 457888865 57 5699998642 1223444 67889999999999999999975422111 0 1112 1222
Q ss_pred HHH-HHHHHHhcCCCeEEEEecCC--HHHHHHHHcc-c-----C-CceEEEecchhhhcchhhhcCCCCCCceEEcCCCC
Q 020186 138 DTI-LQPLIQRLPQLKVVMEHITT--MDAVKFVESC-K-----E-GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLK 207 (329)
Q Consensus 138 ~~~-~~~~la~~~~~~lhi~HvSt--~~sl~~i~~a-k-----~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR 207 (329)
.++ +...+.++++.++.+.|... +.-++.+... + . .+++++|+. +-
T Consensus 186 ~~li~~gv~~rfP~Lkii~~H~Gg~~P~~~~r~~~~~~~~~~~~~~nvy~dts~------------------------~~ 241 (312)
T 3ij6_A 186 LQLVQSDLFQDYPNLKILVHHAGAMVPFFSGRIDHILDEKHAQDFKKFYVDTAI------------------------LG 241 (312)
T ss_dssp HHHHHTTHHHHCTTCCEEESGGGTTTTTSHHHHHHHSCHHHHHHGGGCEEECCS------------------------SS
T ss_pred HHHHHcChHhhCCCCeEEecCCcccHHHHHHHHHHhcccchHHHcCeEEEeCCC------------------------CC
Confidence 222 11246789999999999872 2222222210 0 0 133444321 01
Q ss_pred ChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhhhhcCC
Q 020186 208 REIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGPDFYGL 286 (329)
Q Consensus 208 ~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPAkifgl 286 (329)
++..-+.+.+.+-.+.| +.+||. ||.. .+ .|. .....+.+.+ .++-++.-+++..|.+|+||-
T Consensus 242 ~~~~l~~~~~~~g~dri--lfgSD~-P~~~----~p---~~~------~~~~~~~l~~l~l~~~~~~~i~~~NA~rl~~~ 305 (312)
T 3ij6_A 242 NTPALQLAIDYYGIDHV--LFGTDA-PFAV----MP---SGA------DQIITQAINDLTISDKDKQKIFHDNYYSLIKE 305 (312)
T ss_dssp CHHHHHHHHHHHCGGGE--ECCCCB-TSSS----TT---TCS------HHHHHHHHHTSSSCHHHHHHHHTHHHHHHHCC
T ss_pred CHHHHHHHHHhCCCCeE--EEeCCC-CCCc----CC---Ccc------hHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 12333456666644454 789995 7742 01 121 1112233333 578899999999999999985
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=59.19 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=55.3
Q ss_pred HHHHHHHHh-cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC-----CCh-------hH
Q 020186 65 PDEIKLARK-TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI-----VDI-------FD 131 (329)
Q Consensus 65 ~~el~~l~~-~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~-----~~~-------~~ 131 (329)
.+||+.+.+ .|+ .++|+...+. +....| ..+...++.++++|.+|.+|+.+.... ... ..
T Consensus 106 ~~el~~~~~~~g~-~gi~~~~~~~----~~~~~~--~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~ 178 (307)
T 2f6k_A 106 VKTVQQALDQDGA-LGVTVPTNSR----GLYFGS--PVLERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFFM 178 (307)
T ss_dssp HHHHHHHHHTSCC-SEEEEESEET----TEETTC--GGGHHHHHHHHTTTCEEEEECCCCSCCCTTSSTTCCHHHHHHHH
T ss_pred HHHHHHHHhccCC-cEEEEeccCC----CCCCCc--HhHHHHHHHHHHcCCeEEECCCCCccccccccccccchhccchH
Confidence 457777775 574 6999886431 122344 678899999999999999999865321 000 01
Q ss_pred HHHHHHHHH-HHHHHHhcCCCeEEEEecCC
Q 020186 132 REKVFIDTI-LQPLIQRLPQLKVVMEHITT 160 (329)
Q Consensus 132 ~E~~av~~~-~~~~la~~~~~~lhi~HvSt 160 (329)
....++.+. +...+.++.+.++.+.|.+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~P~l~~v~~H~gg 208 (307)
T 2f6k_A 179 DTTMTFINMLKYHFFEKYPNIKVIIPHAGA 208 (307)
T ss_dssp HHHHHHHHHHHTTHHHHCTTCEEEESGGGT
T ss_pred HHHHHHHHHHhcCccccCCCCeEEccCCCc
Confidence 122223221 11134567889999999964
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0092 Score=56.36 Aligned_cols=158 Identities=11% Similarity=0.012 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecC-CCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecC-CHHHHHHHHcccCCc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGE-VTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHIT-TMDAVKFVESCKEGF 174 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaE-d~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvS-t~~sl~~i~~ak~~~ 174 (329)
..+...++.++++|+||++|++ ..+. .. .+.+++ +..|. ++.+.|+- +..+++..+++-+..
T Consensus 190 ~~f~aq~~~A~~~glPV~iH~~gr~~a-----~~---e~l~iL-----~e~g~~~~~vvi~H~~~s~~~~e~a~~~l~~G 256 (364)
T 3k2g_A 190 KSLRGAARAQVRTGLPLMVHLPGWFRL-----AH---RVLDLV-----EEEGADLRHTVLCHMNPSHMDPVYQATLAQRG 256 (364)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTSCC-----HH---HHHHHH-----HHTTCCGGGEEECCCGGGTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCeEEEecCCCCcc-----HH---HHHHHH-----HHcCCCCCceEEECCCCCCCCHHHHHHHHhCC
Confidence 5677888889999999999985 2111 01 122222 23343 47778997 332444444331112
Q ss_pred eEEEecchhhhcchhhhcCCCCCCceEEcCCCCCh-hhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcCCccch
Q 020186 175 VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE-IHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCAGIYNA 252 (329)
Q Consensus 175 vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~-~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~~ 252 (329)
++.+.+-- -+...|. +.... .| +. +.-+.|.+.++.|-.| ++|+|| +|.....+ +++.+|..
T Consensus 257 ~~I~f~g~---gt~~~f~----~~~~~-~~---~d~~ra~~l~~lv~~gp~drilleTD-~p~~~~~~--~~gg~~~~-- 320 (364)
T 3k2g_A 257 AFLEFDMI---GMDFFYA----DQGVQ-CP---SDDEVARAILGLADHGYLDRILLSHD-VFVKMMLT--RYGGNGYA-- 320 (364)
T ss_dssp CEEEECCT---TCCCEET----TTTEE-CC---CHHHHHHHHHHHHHTTCGGGEEECCC-CCSGGGSG--GGTSCTTS--
T ss_pred cEEEecCC---ccccccc----ccccc-cc---cHHHHHHHHHHHHHhCCcccEEEeCC-CCCCCCCC--CCCCCCcc--
Confidence 23222100 0000010 00000 11 22 2345677778777655 246788 45421111 12212322
Q ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 253 PVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 253 e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
..+..+...+ .+.++.+++.+++..||+|+|+++
T Consensus 321 -~l~~~~~~~l~~~Gis~eei~~~~~~Np~rlf~l~ 355 (364)
T 3k2g_A 321 -FVTKHFLPRLRRHGLDDAALETLMVTNPRRVFDAS 355 (364)
T ss_dssp -HHHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHCTT
T ss_pred -hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 2333222222 356899999999999999999994
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0094 Score=54.44 Aligned_cols=225 Identities=15% Similarity=0.054 Sum_probs=109.9
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCC-------CCCHHHHHHHHhcCceeE
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTD-------TTSPDEIKLARKTGVVFA 79 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~-------~~~~~el~~l~~~G~v~~ 79 (329)
+..|..-||..++... + +++..+...+.+++... -+..+++++.+.+ +...++|.++.+.+-+++
T Consensus 23 l~~a~~~gV~~~v~~g-~-----~~~~~~~~~~la~~~~~--~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~vva 94 (287)
T 3rcm_A 23 VERALEAGVTQMLLTG-T-----SLAVSEQALELCQQLDA--SGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRA 94 (287)
T ss_dssp HHHHHHTTEEEEEECC-C-----SHHHHHHHHHHHHHHCT--TSSSEEEEECCCGGGGGGCCTTHHHHHHHHHTSTTEEE
T ss_pred HHHHHHcCCeEEEEec-C-----CHHHHHHHHHHHHhCCC--CCceEEEEEEECcCccccCCHHHHHHHHHHhcCCCeEE
Confidence 4556777999888763 2 34444444444443211 0011233332221 122456777765432323
Q ss_pred E-EEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC---CeEEE
Q 020186 80 V-KLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ---LKVVM 155 (329)
Q Consensus 80 ~-K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~---~~lhi 155 (329)
+ .+-+.+.......... . ..+.+.++.++++|+||++|+.+.. ...+ .+.+..+ .+. |
T Consensus 95 IGEiGLD~~~~~~~~~~Q-~-~~F~~ql~lA~e~~lPv~iH~r~a~-------------~~~l--~il~~~~~~~~~~-V 156 (287)
T 3rcm_A 95 VGECGLDFNRDFSPRPLQ-E-KALEAQLTLAAQLRLPVFLHERDAS-------------ERLL--AILKDYRDHLTGA-V 156 (287)
T ss_dssp EEEEEEETTTCSSCHHHH-H-HHHHHHHHHHHHHTCCEEEEEESCH-------------HHHH--HHHHTTGGGCSCE-E
T ss_pred EEEeeeCCCcccCcHHHH-H-HHHHHHHHHHHHhCCCEEEEcCCcH-------------HHHH--HHHHHcCCCCCeE-E
Confidence 2 3322211000000111 1 5778889999999999999998641 1122 2223322 244 4
Q ss_pred EecC--CHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCC----ChhhHHHHHHHHHcCCCCeEEe
Q 020186 156 EHIT--TMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLK----REIHRQAVVSAVTSGSRKFFLG 229 (329)
Q Consensus 156 ~HvS--t~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR----~~~dr~aLw~al~~G~Id~~i~ 229 (329)
.|.= +.+.++.+.+ ..++..+ ++++- .++-| .+.+.+-...| ++.
T Consensus 157 ~H~fsG~~e~a~~~l~---~G~yis~-----------------------~g~i~~~k~~~~l~-~~v~~ip~drl--LlE 207 (287)
T 3rcm_A 157 VHCFTGEREALFAYLD---LDLHIGI-----------------------TGWICDERRGTHLH-PLVGNIPEGRL--MLE 207 (287)
T ss_dssp ECSCCCCHHHHHHHHH---TTCEEEE-----------------------CGGGGCTTTCGGGH-HHHTTSCTTSE--EEC
T ss_pred EEeCCCCHHHHHHHHH---CCcEEEE-----------------------CchhccccCHHHHH-HHHHhcCCccE--EEe
Confidence 5863 3333332221 2222222 22221 22222 33343322343 788
Q ss_pred cCCCCCCcCcccccCCcCCccchhHHHHHHHHHH--HhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 230 TDSAPHERGRKECACGCAGIYNAPVALSLYAKVF--EEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 230 SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~--~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
||- |+....-..+ ...|-.+-...++..+..+ .+.++.+++.+.+..|+.|+||++.
T Consensus 208 TD~-P~l~p~~~~~-~~rg~~n~P~~l~~v~~~lA~~~g~s~eev~~~~~~N~~rlf~l~~ 266 (287)
T 3rcm_A 208 SDA-PYLLPRSLRP-KPKSGRNEPAFLPEVLREVALHRGESAEHTAAHTTATARDFFQLPA 266 (287)
T ss_dssp CCT-TSCCCTTCSS-CCTTCCCCGGGHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred ccC-CccCcccccc-ccCCCcCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHCCCh
Confidence 994 6643110000 0024333344566655543 3478999999999999999999953
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.012 Score=52.58 Aligned_cols=143 Identities=17% Similarity=0.076 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcC--CCeEEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLP--QLKVVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~--~~~lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
..+.+.++.++++|+||++|+.+.. ..+.++ +.++. ..++.+ |.-+. ..+.++++-+.++++
T Consensus 120 ~~f~~~~~~a~~~~lPv~iH~~~~~----------~~~~~i----l~~~p~~~~~~I~-H~~~g-~~~~~~~~~~~g~y~ 183 (268)
T 1j6o_A 120 RVFVEQIELAGKLNLPLVVHIRDAY----------SEAYEI----LRTESLPEKRGVI-HAFSS-DYEWAKKFIDLGFLL 183 (268)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH----------HHHHHH----HHHSCCCSSCEEE-TTCCS-CHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCchH----------HHHHHH----HHhcCCCCCCEEE-EcCCC-CHHHHHHHHHCCCeE
Confidence 6788999999999999999998531 122222 33444 678777 96432 122222211135666
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
+++.... + +..+.-..+.+.+-.+.| +++||- |+...... .|-.+-...++
T Consensus 184 ~~sg~~~-~--------------------~~~~~l~~~i~~~~~dri--L~eTD~-P~~~~~~~-----~g~~n~p~~~~ 234 (268)
T 1j6o_A 184 GIGGPVT-Y--------------------PKNEALREVVKRVGLEYI--VLETDC-PFLPPQPF-----RGKRNEPKYLK 234 (268)
T ss_dssp EECGGGG-C--------------------TTCHHHHHHHHHHCGGGE--EECCCB-TSCCCGGG-----TTSCCCGGGHH
T ss_pred Eeccccc-c--------------------cchHHHHHHHHhCChhhE--EEecCC-CCCCCccc-----CCCCCchHHHH
Confidence 6653210 0 011222345555534555 799996 66432211 12222112344
Q ss_pred HHHHHH-H-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 258 LYAKVF-E-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 258 ll~~~~-~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.....+ . ..++.+++.+.+..|++|+||+.
T Consensus 235 ~~~~~la~~~~~~~e~~~~i~~~Na~rlf~l~ 266 (268)
T 1j6o_A 235 YVVETISQVLGVPEAKVDEATTENARRIFLEV 266 (268)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHhCcc
Confidence 443333 2 46899999999999999999984
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0076 Score=55.68 Aligned_cols=188 Identities=16% Similarity=0.155 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC---CCh-------hHHHH
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI---VDI-------FDREK 134 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~---~~~-------~~~E~ 134 (329)
.+||+.+.+.|+ .|+|+...+ .+..++| ..++..++.++++|.+|.+|+.+.... ... ...|.
T Consensus 130 ~~el~~~~~~g~-~Gv~l~~~~----~~~~l~d--~~~~p~~~~~~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~p~~~ 202 (334)
T 2hbv_A 130 CKEASRAVAAGH-LGIQIGNHL----GDKDLDD--ATLEAFLTHCANEDIPILVHPWDMMGGQRMKKWMLPWLVAMPAET 202 (334)
T ss_dssp HHHHHHHHHHTC-CCEEEESCB----TTBCTTS--HHHHHHHHHHHHTTCCEEEECCSCSCTTTTCSTTHHHHTHHHHHH
T ss_pred HHHHHHHHHcCC-eEEEECCCC----CCCCCCc--HHHHHHHHHHHHCCCEEEECCCCCCCCcchhhhhhhhhhhcHHHH
Confidence 467888777785 699988643 2334455 789999999999999999999864211 110 11122
Q ss_pred -HHHHHH-HHHHHHhcCC-CeEEEEecCC--HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCCh
Q 020186 135 -VFIDTI-LQPLIQRLPQ-LKVVMEHITT--MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE 209 (329)
Q Consensus 135 -~av~~~-~~~~la~~~~-~~lhi~HvSt--~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~ 209 (329)
.++.+. +...+.++.+ .++.+.|... +.-++.+... .... +++...|.-.-..+.+ +-++. +-+. +.
T Consensus 203 ~~~~~~l~~~~v~~~~P~~l~~v~~H~Gg~~p~~~~r~~~~--~~~~-~~~~~~~~~~~~~~~~---~~y~d-s~~~-~~ 274 (334)
T 2hbv_A 203 QLAILSLILSGAFERIPKSLKICFGHGGGSFAFLLGRVDNA--WRHR-DIVREDCPRPPSEYVD---RFFVD-SAVF-NP 274 (334)
T ss_dssp HHHHHHHHHTTGGGTSCTTCCEEESGGGTTHHHHHHHHHHH--HHHC-HHHHTTCCSCGGGGGG---GCEEE-CCCS-SH
T ss_pred HHHHHHHHHcCchhhCCCcceEEeecccchHHHHHHHHHhh--hhcc-cccccccCCCHHHHHh---hhEEE-eccC-CH
Confidence 222221 1113456778 9999999852 1111111100 0000 1100000000011110 11222 2121 23
Q ss_pred hhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 210 IHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 210 ~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
..-+.+.+.+-.+.| +.+||. ||....+. + . ..+ ...++-++.-+++..|++|+||++
T Consensus 275 ~~l~~~~~~~g~dri--lfGSD~-P~~~~~~~-----~----~--------~~l~~~~l~~~~~~~i~~~NA~rl~~l~ 333 (334)
T 2hbv_A 275 GALELLVSVMGEDRV--MLGSDY-PFPLGEQK-----I----G--------GLVLSSNLGESAKDKIISGNASKFFNIN 333 (334)
T ss_dssp HHHHHHHHHHCGGGE--ECCCCB-TSTTSCSS-----T----T--------HHHHTSSCCHHHHHHHHTHHHHHHHTCC
T ss_pred HHHHHHHHHhCcccE--EEeCCC-CCCCCCcC-----H----h--------hHhhhcCCCHHHHHHHHhHHHHHHhCCC
Confidence 334455565544555 789997 88543221 0 1 111 136788999999999999999984
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0054 Score=56.07 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCceeEEEEeeccccccCCC-CccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHH
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTNSQD-GVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQP 143 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~~~~-~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~ 143 (329)
.++|+.+.+.| ++|+|....+. .+.. .+.+ ..+.+.++.++++|.++.+|....++ ..+.+
T Consensus 91 ~~~L~~l~~~g-v~Gir~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~glpv~ih~~~~~l---------~~l~~---- 152 (303)
T 4do7_A 91 AERVAEWRGTK-LRGFRHQLQDE--ADVRAFVDD--ADFARGVAWLQANDYVYDVLVFERQL---------PDVQA---- 152 (303)
T ss_dssp HHHHTTCCSSC-EEEEECCGGGS--SCHHHHHHC--HHHHHHHHHHHHTTCEEEECCCGGGH---------HHHHH----
T ss_pred HHHHHHHhhcC-ceEEEecCcCC--CCccccccC--HHHHHHHHHHHHCCCeEEEecCHHHH---------HHHHH----
Confidence 45677766556 57999764321 1101 2344 68899999999999999999875421 12332
Q ss_pred HHHhcCCCeEEEEecCCHH----------------HHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCC
Q 020186 144 LIQRLPQLKVVMEHITTMD----------------AVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLK 207 (329)
Q Consensus 144 ~la~~~~~~lhi~HvSt~~----------------sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR 207 (329)
.+.+..++++.|.|...+. .+..+. +..+|++.++--+.....+. +. -.+|
T Consensus 153 ll~~~P~l~iVi~H~G~p~~~~~~~~~~~~~~w~~~l~~la--~~~nv~~klSg~~~~~~~~~------~~---~~~~-- 219 (303)
T 4do7_A 153 FCARHDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELA--ALPHVVCKLSGLVTEADWRR------GL---RASD-- 219 (303)
T ss_dssp HHHHCCSSCEEEGGGGCCCGGGCC---CHHHHHHHHHHHHH--TSTTEEEEECSCGGGSCTTT------CC---CHHH--
T ss_pred HHHHCCCCCEEEeCCCCCCccccccccchHHHHHHHHHHHH--hCCCEEEEeCCccccccccc------cc---cCCC--
Confidence 3456778999999998742 222222 22688999874332211000 00 0000
Q ss_pred Chhh----HHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhh
Q 020186 208 REIH----RQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDF 283 (329)
Q Consensus 208 ~~~d----r~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAki 283 (329)
.++ -+.+.+.+-...| +.|||. ||.... + +.+..+-.+-..+...++-+..-+++..|++|+
T Consensus 220 -~~~~~~~~~~~~~~~G~dri--~fgSD~-P~~~~~--------~--~~~~~~~~~~~~~~~~l~~~~~~~i~~~Na~rl 285 (303)
T 4do7_A 220 -LRHIEQCLDAALDAFGPQRL--MFGSDW-PVCLLA--------A--SYDEVASLVERWAESRLSAAERSALWGGTAARC 285 (303)
T ss_dssp -HHHHHHHHHHHHHHHCGGGE--EECCCB-TGGGGT--------C--CHHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCcccE--EEeCCC-CCCcCc--------C--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 122 1244555534454 789995 775321 0 111122222111223578888999999999999
Q ss_pred cCCCC
Q 020186 284 YGLPR 288 (329)
Q Consensus 284 fgl~~ 288 (329)
||++.
T Consensus 286 ~~l~~ 290 (303)
T 4do7_A 286 YALPE 290 (303)
T ss_dssp TTCC-
T ss_pred hCCCC
Confidence 99953
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0082 Score=54.89 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=96.7
Q ss_pred HHHHHHHHhc-CceeEEEEeecccccc--CCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC-------C-C-----
Q 020186 65 PDEIKLARKT-GVVFAVKLYPAGATTN--SQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI-------V-D----- 128 (329)
Q Consensus 65 ~~el~~l~~~-G~v~~~K~f~~~~~~~--~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~-------~-~----- 128 (329)
.+||+.+.+. |+ .++|+.+.+...+ .+..+++ ..+...++.++++|.+|.+|+.+.... . .
T Consensus 110 ~~el~~~~~~~g~-~gi~i~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~ 186 (327)
T 2dvt_A 110 TEELQRCVNDLGF-VGALVNGFSQEGDGQTPLYYDL--PQYRPFWGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPT 186 (327)
T ss_dssp HHHHHHHHHTTCC-CEEEEESSBCCTTCCSCBCTTS--GGGHHHHHHHHHHTCCEEEECCCCCGGGCGGGTTCGGGSGGG
T ss_pred HHHHHHHHhcCCc-eEEEECCCCCCCcccCCCCCCC--cchHHHHHHHHHcCCeEEECCCCCCcchhhhhccchhhhccc
Confidence 4578887654 74 6999876532100 0223445 678999999999999999999764311 0 0
Q ss_pred h-hHHHH-HHHHH-HHHHHHHhcCCCeEEEEecCC--HHHHHHHHcccC-CceEEEecchhhhcchhhhcCCCCCCceEE
Q 020186 129 I-FDREK-VFIDT-ILQPLIQRLPQLKVVMEHITT--MDAVKFVESCKE-GFVAATVTPQHLVLNRNALFQGGLRPHNYC 202 (329)
Q Consensus 129 ~-~~~E~-~av~~-~~~~~la~~~~~~lhi~HvSt--~~sl~~i~~ak~-~~vt~Et~phhL~l~~~~~~~~~~~~~~k~ 202 (329)
. +..|. .++.. ++...+.++.+.++.+.|.+. +.-++.+...-. .... .-.+ +.-.-..+... +-++++
T Consensus 187 ~~~~~~~~~~~~~l~~~~v~~~~P~l~~v~~H~gg~~p~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~--n~y~~~ 261 (327)
T 2dvt_A 187 WAFAQETAVHALRLMASGLFDEHPRLNIILGHMGEGLPYMMWRIDHRNAWVKLP-PRYP--AKRRFMDYFNE--NFHITT 261 (327)
T ss_dssp THHHHHHHHHHHHHHHTTHHHHCTTCCEEESGGGTTHHHHHHHHHHTTTTCCSC-CSSS--CSSCHHHHHHH--HEEEEC
T ss_pred ccccHHHHHHHHHHHHcCcHhhCCCCeEEEecccccHHHHHHHHHhhhhhcccc-ccCC--CCCCHHHHHhh--cEEEec
Confidence 0 11121 11111 111135677889999999862 112222221000 0000 0000 00000111000 123334
Q ss_pred cCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhhhhh
Q 020186 203 LPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSFNGP 281 (329)
Q Consensus 203 ~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~nPA 281 (329)
+.... ...-+.+.+.+-.+.| +++||. ||.. .+. ....+.+ .++-+..-+++..|++
T Consensus 262 sg~~~-~~~~~~~~~~~g~dri--l~gSD~-P~~~--------------~~~----~~~~~~~~~l~~~~~~~i~~~Na~ 319 (327)
T 2dvt_A 262 SGNFR-TQTLIDAILEIGADRI--LFSTDW-PFEN--------------IDH----ASDWFNATSIAEADRVKIGRTNAR 319 (327)
T ss_dssp TTCCC-HHHHHHHHTTTCGGGE--ECCCCT-TTSC--------------HHH----HHHHHHHSSSCHHHHHHHHTHHHH
T ss_pred cCCCC-HHHHHHHHHHhCcccE--EEecCC-CCcc--------------HHH----HHHHHHHCCCCHHHHHHHHHHhHH
Confidence 43332 2222333343322343 789995 7631 011 1122222 5788999999999999
Q ss_pred hhcCCC
Q 020186 282 DFYGLP 287 (329)
Q Consensus 282 kifgl~ 287 (329)
|+||++
T Consensus 320 rl~~l~ 325 (327)
T 2dvt_A 320 RLFKLD 325 (327)
T ss_dssp HHTTCC
T ss_pred HHhCCC
Confidence 999985
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.018 Score=53.87 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecC-CHHHHHHHHcccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHIT-TMDAVKFVESCKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvS-t~~sl~~i~~ak~~~v 175 (329)
..+...++.++++|+||++|+++... + ..+ + .+.+..+. ++.+.|+- +. +++..+++-+...
T Consensus 173 ~~f~aq~~lA~~~glPViiH~~~gr~------a--~~~---~--~iL~~~~~~~~~~vi~H~~~~~-~~e~a~~~l~~G~ 238 (339)
T 3gtx_A 173 LFFRAAARVQRETGVPIITHTQEGQQ------G--PQQ---A--ELLTSLGADPARIMIGHMDGNT-DPAYHRETLRHGV 238 (339)
T ss_dssp HHHHHHHHHHHHHCCCEEEECSTTCC------H--HHH---H--HHHHHTTCCGGGEEECCGGGCC-CHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCcC------H--HHH---H--HHHHHcCCCcccEEEEccCCCC-CHHHHHHHHHcCc
Confidence 56778888999999999999975421 1 112 2 22333343 46788995 32 3444443211222
Q ss_pred EEEecchhhhcchhhhcCCCCCCceEEcCCCCCh-hhHHHHHHHHHcCCCC-eEEecCCCCCCc-Ccc-cccC-C-c-CC
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE-IHRQAVVSAVTSGSRK-FFLGTDSAPHER-GRK-ECAC-G-C-AG 248 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~-~dr~aLw~al~~G~Id-~~i~SDHaPh~~-~eK-~~~~-~-~-~G 248 (329)
+.+.+- -. ...+.. .| +. ..-+.|.+.+..|-.| ++++|| +|+.. .+. ..|. . . .|
T Consensus 239 ~i~~~g-------~~-----t~~~~~-~p---~~~~~~~~l~~li~~~~~drilleTD-~p~~~~~~P~~~p~~~~~~~g 301 (339)
T 3gtx_A 239 SIAFDR-------IG-----LQGMVG-TP---TDAERLSVLTTLLGEGYADRLLLSHD-SIWHWLGRPPAIPEAALPAVK 301 (339)
T ss_dssp EEEECC-------TT-----CCSSTT-CC---CHHHHHHHHHHHHHTTCGGGEEECCC-CEEEESSSCCCCCGGGHHHHH
T ss_pred EEEEcc-------Cc-----cccccC-CC---chHHHHHHHHHHHHhcCCCeEEEecC-CCccccCCcccccccccccCC
Confidence 333211 00 000100 01 22 3344566777766555 256788 45531 000 0000 0 0 01
Q ss_pred ccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcC
Q 020186 249 IYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 249 i~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifg 285 (329)
..+..+.+-.+...+ .+.++.+++.+++..||+|+||
T Consensus 302 ~n~p~~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 302 DWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp TCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 122222222222333 3467999999999999999996
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.016 Score=51.78 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
..+.+.++.++++|+||++|+.+.. . .+.++ +.+....++.+ |.-+. +.+.++++.+..++.++
T Consensus 126 ~~f~~~~~la~~~~lPv~iH~~~a~-------~---~~~~i----l~~~~~~~~v~-H~~~g-~~~~~~~~~~~g~~i~~ 189 (272)
T 2y1h_A 126 QVLIRQIQLAKRLNLPVNVHSRSAG-------R---PTINL----LQEQGAEKVLL-HAFDG-RPSVAMEGVRAGYFFSI 189 (272)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTCH-------H---HHHHH----HHHTTCCSEEE-ETCCS-CHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCcH-------H---HHHHH----HHhCCCCCEEE-EccCC-CHHHHHHHHHCCCEEEE
Confidence 5788899999999999999998641 1 12222 22333456766 87432 22333322113455555
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLY 259 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll 259 (329)
++..+ +++.-| .+.+.+-...+ +++||. |+....+ |-.+....++-.
T Consensus 190 ~g~~~----------------------~~~~~~-~~~~~~~~drl--l~eTD~-P~~~p~~-------g~~~~p~~l~~~ 236 (272)
T 2y1h_A 190 PPSII----------------------RSGQKQ-KLVKQLPLTSI--CLETDS-PALGPEK-------QVRNEPWNISIS 236 (272)
T ss_dssp CGGGG----------------------TCHHHH-HHHHHSCGGGE--EECCCT-TSSCSST-------TSCCCGGGHHHH
T ss_pred CCccc----------------------CcHHHH-HHHHhCCHHHE--EEecCC-CCCCCCC-------CCcCcHHHHHHH
Confidence 43210 112222 23333322333 799996 6532211 111111233333
Q ss_pred HHHH-H-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 260 AKVF-E-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 260 ~~~~-~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+..+ . ..++.+.+.+.+..||+|+||++
T Consensus 237 ~~~la~~~g~~~e~~~~~~~~N~~~l~~~~ 266 (272)
T 2y1h_A 237 AEYIAQVKGISVEEVIEVTTQNALKLFPKL 266 (272)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHhH
Confidence 3322 2 36799999999999999999983
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.03 Score=52.91 Aligned_cols=183 Identities=11% Similarity=0.183 Sum_probs=100.3
Q ss_pred HHHHHHHHhc-CceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC------------h-h
Q 020186 65 PDEIKLARKT-GVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD------------I-F 130 (329)
Q Consensus 65 ~~el~~l~~~-G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~------------~-~ 130 (329)
.+||+.+.+. |+ .|+|+++.. .+..++| ..++.+++.++++|.+|.+|+........ . +
T Consensus 162 ~~EL~r~~~~~G~-~Gv~l~~~~----~g~~l~d--~~~~pi~~~~~e~g~pV~iH~g~~~~~~~~p~~~~~~~~~~~g~ 234 (373)
T 4inf_A 162 AREIHRGARELGF-KGIQINSHT----QGRYLDE--EFFDPIFRALVEVDQPLYIHPATSPDSMIDPMLEAGLDGAIFGF 234 (373)
T ss_dssp HHHHHHHHHTSCC-CCEEECSCB----TTBCTTS--GGGHHHHHHHHHHTCCEEECCCCCCTTTCHHHHHHTCSSTTTHH
T ss_pred HHHHHHHHhhcCc-eEEEECCCC----CCCCCCC--cchHHHHHHHHHcCCeEEECCCCCCccccccccccccchhhhhh
Confidence 3578888876 85 699988642 2233455 67899999999999999999997642110 0 1
Q ss_pred HHHH-HHHHHH-HHHHHHhcCCCeEEEEecCC-----HHHHHHHH-----cccC-CceEEEecchhhhcchhhhcCCCCC
Q 020186 131 DREK-VFIDTI-LQPLIQRLPQLKVVMEHITT-----MDAVKFVE-----SCKE-GFVAATVTPQHLVLNRNALFQGGLR 197 (329)
Q Consensus 131 ~~E~-~av~~~-~~~~la~~~~~~lhi~HvSt-----~~sl~~i~-----~ak~-~~vt~Et~phhL~l~~~~~~~~~~~ 197 (329)
..|. .++.++ +...+.++++.++.+.|... .+-++..- ..+. ..-...-.|- ++.+
T Consensus 235 ~~et~~~~~~Li~~gv~~rfP~LkiilaH~Gg~~P~~l~Rld~~~~~~~~~~~~~~~~~l~~~ps-------e~~~---- 303 (373)
T 4inf_A 235 GVETGMHLLRLITIGIFDKYPSLQIMVGHMGEALPYWLYRLDYMHQAGVRSQRYERMKPLKKTIE-------GYLK---- 303 (373)
T ss_dssp HHHHHHHHHHHHHHTHHHHCTTCCEEECHHHHTTTTTHHHHHHHHHHHHHHTCCTTCCCCSSCHH-------HHHH----
T ss_pred HHHHHHHHHHHHHcCchhhCcCCeEEEecccchHHHHHHHHHHHHhhccccccccccccccCCHH-------HHHh----
Confidence 1232 223332 22235789999999999751 11222111 0110 0000001111 1100
Q ss_pred CceEEcC-CCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHH
Q 020186 198 PHNYCLP-VLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAF 275 (329)
Q Consensus 198 ~~~k~~P-PLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~ 275 (329)
..+.+.+ ..-+...-..+.+.+-.+.| +.+||. ||...+ .. ...+.. .++-++.-++
T Consensus 304 ~nvy~d~sg~~~~~~l~~~~~~~g~dri--lfgSD~-P~~~~~--------------~~----~~~l~~~~l~~e~~~~I 362 (373)
T 4inf_A 304 SNVLVTNSGVAWEPAIKFCQQVMGEDRV--MYAMDY-PYQYVA--------------DE----VRAMDAMDMSAQTKKKF 362 (373)
T ss_dssp HTEEEECTTCCCHHHHHHHHHHHCGGGE--ECCCCT-TTTCCH--------------HH----HHHHHTCSCCHHHHHHH
T ss_pred cCeEEeecccccHHHHHHHHHHcCcceE--EEecCC-CCCccH--------------HH----HHHHHhCCCCHHHHHHH
Confidence 0111111 11123344456666644555 789996 775321 01 122222 5788999999
Q ss_pred HhhhhhhhcCC
Q 020186 276 TSFNGPDFYGL 286 (329)
Q Consensus 276 ~s~nPAkifgl 286 (329)
+..|.+|+|||
T Consensus 363 ~~~NA~rlf~L 373 (373)
T 4inf_A 363 FQTNAEKWFKL 373 (373)
T ss_dssp HTHHHHHHTTC
T ss_pred HhHHHHHHhCc
Confidence 99999999986
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0083 Score=55.39 Aligned_cols=185 Identities=18% Similarity=0.171 Sum_probs=99.9
Q ss_pred HHHHHHHHh-cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC---CCh-------hHHH
Q 020186 65 PDEIKLARK-TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI---VDI-------FDRE 133 (329)
Q Consensus 65 ~~el~~l~~-~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~---~~~-------~~~E 133 (329)
.+||+.+.+ .|+ .|+|+...+ .+..++| ..++..++.++++|.+|.+|+.+.... ... ...|
T Consensus 126 ~~el~~~~~~~g~-~Gv~l~~~~----~~~~l~d--~~~~~~~~~~~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 2wm1_A 126 VKEMERCVKELGF-PGVQIGTHV----NEWDLNA--QELFPVYAAAERLKCSLFVHPWDMQMDGRMAKYWLPWLVGMPAE 198 (336)
T ss_dssp HHHHHHHHHTSCC-SEEEEESEE----TTEETTC--GGGHHHHHHHHHHTCEEEEECCSCCCSGGGSSTTHHHHTHHHHH
T ss_pred HHHHHHHHHccCC-eEEEECCcC----CCCCCCC--ccHHHHHHHHHHcCCEEEECCCCCCccccccccchHHHhccHHH
Confidence 467888875 574 699987643 1233445 678999999999999999999864211 010 1112
Q ss_pred H-HHHHHH-HHHHHHhcCCCeEEEEecCC--HHHHHHHHcc-cC-Cce---EEEecchhhhcchhhhcCCCCCCceEEcC
Q 020186 134 K-VFIDTI-LQPLIQRLPQLKVVMEHITT--MDAVKFVESC-KE-GFV---AATVTPQHLVLNRNALFQGGLRPHNYCLP 204 (329)
Q Consensus 134 ~-~av~~~-~~~~la~~~~~~lhi~HvSt--~~sl~~i~~a-k~-~~v---t~Et~phhL~l~~~~~~~~~~~~~~k~~P 204 (329)
. .++.+. +...+.++.+.++.+.|.+. +.-++.+... +. ..+ .....| ..+-+ +-++. +.
T Consensus 199 ~~~~~~~l~~~~v~~~~P~l~~v~~H~Gg~~p~~~~r~~~~~~~~~~~~~~~l~~~p-------~~~~~---~~~~d-s~ 267 (336)
T 2wm1_A 199 TTIAICSMIMGGVFEKFPKLKVCFAHGGGAFPFTVGRISHGFSMRPDLCAQDNPMNP-------KKYLG---SFYTD-AL 267 (336)
T ss_dssp HHHHHHHHHHTTHHHHCTTCCEEESGGGTTHHHHHHHHHHHHHHCHHHHSSSCCSCG-------GGGTT---SSEEE-CC
T ss_pred HHHHHHHHHHcCchhhCCCCeEehhcccchHHHHHHHHHhhhhhChhhhhccCCCCH-------HHHHH---hhEEE-ec
Confidence 1 222221 11135677889999999852 1112211100 00 000 000112 11111 11222 22
Q ss_pred CCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhh
Q 020186 205 VLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPD 282 (329)
Q Consensus 205 PLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAk 282 (329)
+ -+...-+.+.+.+-.+.| +.+||. ||...++. + . ..+. ..++-+..-+++..|++|
T Consensus 268 ~-~~~~~l~~~i~~~g~dri--lfGSD~-P~~~~~~~-----~----~--------~~l~~~~~l~~~~~~~i~~~NA~r 326 (336)
T 2wm1_A 268 V-HDPLSLKLLTDVIGKDKV--ILGTDY-PFPLGELE-----P----G--------KLIESMEEFDEETKNKLKAGNALA 326 (336)
T ss_dssp C-CSHHHHHHHHHHHCTTSE--ECCCCB-TSTTSCSS-----T----T--------HHHHTCTTSCHHHHHHHHTHHHHH
T ss_pred c-cCHHHHHHHHHHhCCccE--EEeCCC-CCCcCCcC-----H----H--------HHHHhccCCCHHHHHHHHHHHHHH
Confidence 2 223334455566644555 789996 88543221 0 0 1222 356889999999999999
Q ss_pred hcCCCC
Q 020186 283 FYGLPR 288 (329)
Q Consensus 283 ifgl~~ 288 (329)
+||++.
T Consensus 327 l~~l~~ 332 (336)
T 2wm1_A 327 FLGLER 332 (336)
T ss_dssp HHTCCC
T ss_pred HhCcCc
Confidence 999953
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.024 Score=51.58 Aligned_cols=154 Identities=8% Similarity=0.043 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhHcCCcEEEecC-CCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecCCHHHHHHHHcccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGE-VTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHITTMDAVKFVESCKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaE-d~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvSt~~sl~~i~~ak~~~v 175 (329)
..+.+.++.++++|++|++|+. ... .. . ..+ .+.+..|. ++.|.|.-+..+.+.++++.+..+
T Consensus 151 ~~~~~~~~lA~~~~~pv~iH~~~~~~------~~--~---~~~--~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~ 217 (314)
T 2vc7_A 151 KVIRAAAIANKETKVPIITHSNAHNN------TG--L---EQQ--RILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGS 217 (314)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCTTTT------HH--H---HHH--HHHHHTTCCGGGEEETTGGGCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCEEEEeCCCccc------Ch--H---HHH--HHHHHcCCCcccEEEECCCCCCCHHHHHHHHHcCC
Confidence 3466678888999999999997 211 01 1 122 22233343 678889853222333333211122
Q ss_pred EEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCc-CcccccCCc-CCcc--
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHER-GRKECACGC-AGIY-- 250 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~-~eK~~~~~~-~Gi~-- 250 (329)
+...+-.- ..++ + +....++.+.+.+..|-.| ++++||- |+.. .....|.-. .|-+
T Consensus 218 ~i~~~~~~------------~~~~----~--~~~~~~~~i~~~~~~g~~drilleTD~-~~~~~~~~~~p~~~~~g~~~~ 278 (314)
T 2vc7_A 218 FIGLDRYG------------LDLF----L--PVDKRNETTLRLIKDGYSDKIMISHDY-CCTIDWGTAKPEYKPKLAPRW 278 (314)
T ss_dssp EEEECCTT------------CTTT----S--CHHHHHHHHHHHHHTTCTTTEEECCCC-BSSBCCGGGCTTSHHHHCTTC
T ss_pred EEEEeCCC------------cccC----C--CHHHHHHHHHHHHHcCCCCeEEEcCCc-cccccccccchhhhhcCCCCc
Confidence 33322100 0000 0 1123345565666543333 2789995 3321 000001100 1222
Q ss_pred chhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcC
Q 020186 251 NAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 251 ~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifg 285 (329)
+....++-+...+. +.++.+++.+.+..||+|+||
T Consensus 279 ~~~~~~~~~~~~l~~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 279 SITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp STTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 32233443333333 467999999999999999986
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0044 Score=58.78 Aligned_cols=160 Identities=11% Similarity=0.004 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHH---HHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREK---VFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGF 174 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~---~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~ 174 (329)
+.+.++.+.+.+.|..+.+|........ ....+. ..+.. . .-....+.+..+.|.. +....+++.+ ..
T Consensus 240 ~~~~~~~~~a~~~g~~~~~h~~~~~~~~-~~~~~~~g~~~~~~-~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~---~~ 312 (479)
T 3hpa_A 240 DLMRDAAVLAREYGVSLHTHLAENVNDI-AYSREKFGMTPAEY-A--EDLGWVGHDVWHAHCVQLDDAGIGLFAR---TG 312 (479)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCSHHHH-HC-------CHHHH-H--HHTTCCSTTEEEEECTTCCHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHhcCCeEEeecccchHHH-HHHHHHcCCchHHH-H--hhhccccccceeeeeEecchhHHHHHHh---cC
Confidence 6677788888888888888865331000 000000 01111 1 1122344556666654 3444444443 23
Q ss_pred eEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhH
Q 020186 175 VAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPV 254 (329)
Q Consensus 175 vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~ 254 (329)
+....+|...... . .+ .+|. ...+..|..- .++||..+... ......+.
T Consensus 313 ~~~~~~p~~~~~~----~---~~-----~~~~---------~~~~~~~~~v-~~gtD~~~~~~---------~~~~~~~~ 361 (479)
T 3hpa_A 313 TGVAHCPCSNMRL----A---SG-----IAPV---------KKMRLAGVPV-GLGVDGSASND---------GAQMVAEV 361 (479)
T ss_dssp CEEEECHHHHHHT----T---CC-----CCCH---------HHHHHHTCCE-EECCCCTTSSC---------CCCHHHHH
T ss_pred Cceeecccccccc----c---cC-----ccch---------hHHHhcCCcE-EeeccccccCC---------CccHHHHH
Confidence 4555566432211 0 11 1221 1223345554 78999754321 11111222
Q ss_pred HHHHHH-HHH--HhcCCHHHHHHHHhhhhhhhcCCCC-C------cccEEEEe
Q 020186 255 ALSLYA-KVF--EEMGALDKLEAFTSFNGPDFYGLPR-N------TSKIKLTK 297 (329)
Q Consensus 255 ~lpll~-~~~--~~~~~l~~~v~~~s~nPAkifgl~~-~------dADlvi~~ 297 (329)
.+..++ ... .+.+++++++++++.||||+||+++ | +|||||||
T Consensus 362 ~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~G~I~~G~~ADlvv~D 414 (479)
T 3hpa_A 362 RQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALKPGMAADFAAFD 414 (479)
T ss_dssp HHHHHHHHHHHCTTSCCHHHHHHHTTHHHHHHHTCSSSSSCSTTSBCCEEEEE
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHHhCCCCCccCCCCCcCCEEEEc
Confidence 333322 222 2368999999999999999999953 4 79999995
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.022 Score=53.48 Aligned_cols=184 Identities=14% Similarity=0.183 Sum_probs=99.1
Q ss_pred HHHHHHHH-hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC------CC-h-------
Q 020186 65 PDEIKLAR-KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI------VD-I------- 129 (329)
Q Consensus 65 ~~el~~l~-~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~------~~-~------- 129 (329)
.+||+.+. +.|+ .|+|++... .+..++| ..++.+++.++++|.+|.+|+...... .+ .
T Consensus 144 ~~El~r~~~~~G~-~Gv~l~~~~----~~~~~~d--~~~~p~~~~~~e~g~pV~iH~g~~~~~~~~~~~~g~~~~~~~~~ 216 (357)
T 3nur_A 144 AREFERCINDLGF-KGALIMGRA----QDGFLDQ--DKYDIIFKTAENLDVPIYLHPAPVNSDIYQSYYKGNYPEVTAAT 216 (357)
T ss_dssp HHHHHHHHHTTCC-CCEEEESCB----TTBCTTS--GGGHHHHHHHHHHTCCEEEECCCCCHHHHHHHTCCSSCHHHHHH
T ss_pred HHHHHHHHhhcCc-eEEEeCCCC----CCCCCCC--ccHHHHHHHHHhcCCeEEEecCCCCccccccccccCcccchhhh
Confidence 46788865 5684 699998532 1223444 678999999999999999999864210 00 0
Q ss_pred -------hHHHH-HHHHH-HHHHHHHhcCCCeEEEEecCC--HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCC
Q 020186 130 -------FDREK-VFIDT-ILQPLIQRLPQLKVVMEHITT--MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRP 198 (329)
Q Consensus 130 -------~~~E~-~av~~-~~~~~la~~~~~~lhi~HvSt--~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~ 198 (329)
+..|. .++.+ ++...+.++++.++.+.|... +--++.+...- ...+|--.-+++-+ .
T Consensus 217 ~~~~~~~~~~~t~~~~~~li~~gv~~rfP~LkiilaH~Gg~~P~~~~rld~~~--------~~~~l~~~ps~~~~----~ 284 (357)
T 3nur_A 217 FACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEAL--------FAEHLNHSVSYYFK----N 284 (357)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHTTHHHHSTTCCEEECGGGTTGGGGHHHHHHHS--------CCTTSSSCHHHHHH----H
T ss_pred hhhhhhchhHHHHHHHHHHHHcCchhhCCCCeEEEecccccHHHHHHHHHhhh--------ccccccCCHHHHHH----h
Confidence 00111 11111 222235689999999999872 22233332210 00011000011100 1
Q ss_pred ceEEcCC-CCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHH
Q 020186 199 HNYCLPV-LKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFT 276 (329)
Q Consensus 199 ~~k~~PP-LR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~ 276 (329)
.+.+.+. .-+...-+.+.+.+-.+.| +.+||. ||...+. . ...+.. .++-++.-+++
T Consensus 285 nvy~~~sg~~~~~~l~~~~~~~g~dri--lfgSD~-P~~~~~~--------------~----~~~~~~~~l~~~~~~~i~ 343 (357)
T 3nur_A 285 SFYITPSGMLTKPQFDLVKKEVGIDRI--LYAADY-PYIEPEK--------------L----GVFLDELGLTDEEKEKIS 343 (357)
T ss_dssp SEEECCTTCCCHHHHHHHHHHHCGGGB--CBCCCT-TTCCCTT--------------H----HHHTTSSCCCHHHHHHHH
T ss_pred ceeeecccCCCHHHHHHHHHHcCCceE--EEeCCC-CCCCchH--------------H----HHHHHHcCCCHHHHHHHH
Confidence 2222221 1123344456666644555 789996 7753211 0 112222 46788899999
Q ss_pred hhhhhhhcCCCC
Q 020186 277 SFNGPDFYGLPR 288 (329)
Q Consensus 277 s~nPAkifgl~~ 288 (329)
..|.+|+|||++
T Consensus 344 ~~NA~rl~~l~~ 355 (357)
T 3nur_A 344 YTNGAKLLGLSS 355 (357)
T ss_dssp THHHHHHHTC--
T ss_pred hHHHHHHhCCCC
Confidence 999999999954
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.14 Score=46.55 Aligned_cols=23 Identities=9% Similarity=-0.244 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 265 EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 265 ~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+.++.+.+.+.+..|+.|+||++
T Consensus 271 ~g~~~e~~~~~~~~Na~rlf~~~ 293 (301)
T 2xio_A 271 RDEDPLELANTLYNNTIKVFFPV 293 (301)
T ss_dssp HTCCHHHHHHHHHHHHHHHHCCC
T ss_pred HCcCHHHHHHHHHHHHHHHhCch
Confidence 46899999999999999999985
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0071 Score=54.75 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCC-CC-C---
Q 020186 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR-N--- 289 (329)
Q Consensus 215 Lw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl-~~-~--- 289 (329)
.......|... .++||..+... +. ...++..+.+.+|+++++++++.||||+||+ ++ |
T Consensus 311 ~~~~~~~g~~~-~~g~d~~~~~~----------~~------~~~~~~~~~~gls~~eal~~~T~~pA~~lgl~~~~Gsi~ 373 (426)
T 3mkv_A 311 IEIMKRAGVKM-GFGTDLLGEAQ----------RL------QSDEFRILAEVLSPAEVIASATIVSAEVLGMQDKLGRIV 373 (426)
T ss_dssp HHHHHHHTCCB-CCCCCCCGGGG----------GG------TTHHHHHHHTTSCHHHHHHHTTHHHHHHTTCBTTBSSCC
T ss_pred hHHhhhcCcee-eeccCCccccc----------ch------HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCCcceeC
Confidence 44455567666 77777643211 11 1112234456789999999999999999999 34 4
Q ss_pred ---cccEEEEe
Q 020186 290 ---TSKIKLTK 297 (329)
Q Consensus 290 ---dADlvi~~ 297 (329)
+|||||||
T Consensus 374 ~G~~ADlvvlD 384 (426)
T 3mkv_A 374 PGAHADVLVVD 384 (426)
T ss_dssp TTSBCCEEEES
T ss_pred CCCcceEEEEC
Confidence 79999994
|
| >4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase, bimetal binding site, enzyme FUNC initiative, EFI; HET: SO4; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.02 Score=55.11 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=125.3
Q ss_pred ccCccEEEECCCCCCC-----CCcH----HHHHHHHHHHHhhCC-CCc--cEEEEEEEEeCC-CCCHHHHHHHHhcCcee
Q 020186 12 VSHYGRAIVMPNLKPP-----ITTT----AAAVAYRESILKALP-ASS--NFTPLMTLYLTD-TTSPDEIKLARKTGVVF 78 (329)
Q Consensus 12 ~GGvTtvidmPnt~p~-----~~~~----~~l~~~~~~~~~~~~-~~v--d~~~~~~~~~~~-~~~~~el~~l~~~G~v~ 78 (329)
..||...+.+|+.... ..++ +..+...+.+.+... ..- .|...+.+...+ +...+||+.+.+.|+ .
T Consensus 112 ~~GId~~Vl~p~~~~~~~~~~~~d~e~a~~~~r~~Nd~lae~~~~~~P~~Rf~g~a~v~~~d~~~a~~EL~r~~~~G~-~ 190 (423)
T 4dzi_A 112 EQDIETAFMLPTFGCGVEEALKHDIEATMASVHAFNLWLDEDWGFDRPDHRIIAAPIVSLADPTRAVEEVDFVLARGA-K 190 (423)
T ss_dssp HHTEEEEEEECSGGGGHHHHTTTCHHHHHHHHHHHHHHHHHHTCSSCTTCCEEECCBCCCSSHHHHHHHHHHHHHTTC-S
T ss_pred HcCCcEEEECCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCccCHHHHHHHHHHHHHcCC-e
Confidence 4588887777753211 1232 233444444444211 112 244333331111 113468888888885 6
Q ss_pred EEEEeecccccc-CCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC--------C---------Chh------HHHH
Q 020186 79 AVKLYPAGATTN-SQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI--------V---------DIF------DREK 134 (329)
Q Consensus 79 ~~K~f~~~~~~~-~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~--------~---------~~~------~~E~ 134 (329)
|+|+++....+. ++..+.| ..+..+++.++++|.+|.+|+.+.... . ... ..+.
T Consensus 191 Gv~l~p~~~~~~~g~~~l~d--~~~~pl~~~~~elg~pV~iH~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
T 4dzi_A 191 LVLVRPAPVPGLVKPRSLGD--RSHDPVWARLAEAGVPVGFHLSDSGYLHIAAAWGGKSTFEGFGAKDPLDQVLLDDRAI 268 (423)
T ss_dssp CEECCSSCBCCSSSCBCTTC--GGGHHHHHHHHHHTCCEEEECCCCSTHHHHHHTTCC-------CCCHHHHHHHTTHHH
T ss_pred EEEEecCCCCCCCCCCCCCC--ccHHHHHHHHHhcCCeEEEeCCCCCccccccccccccccccccccchhHHHhccchHH
Confidence 999986431111 1233445 678999999999999999999875321 0 000 0111
Q ss_pred -HHHHHH-HHHHHHhcCCCeEEEEecCC---HHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCCh
Q 020186 135 -VFIDTI-LQPLIQRLPQLKVVMEHITT---MDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKRE 209 (329)
Q Consensus 135 -~av~~~-~~~~la~~~~~~lhi~HvSt---~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~ 209 (329)
.++.++ +...+-++++.++.+.|... +.-++-+...-+ ..|..+--.-.++-+ .++.+.| . .+
T Consensus 269 ~~a~~~Li~sGvf~RfP~Lkiil~h~Gg~wlP~~l~Rld~~~~------~~~~~~~~~Pse~~r----~n~y~t~-~-~~ 336 (423)
T 4dzi_A 269 HDTMASMIVHGVFTRHPKLKAVSIENGSYFVHRLIKRLKKAAN------TQPQYFPEDPVEQLR----NNVWIAP-Y-YE 336 (423)
T ss_dssp HHHHHHHHHTTHHHHCTTCCEEEESSCSTHHHHHHHHHHHHHH------HCGGGCSSCHHHHHH----HHEEECC-C-TT
T ss_pred HHHHHHHHHcCchhhCCCCeEEEeCCCcchHHHHHHHHHHHHH------hCccccCCCHHHHHh----hCeEEee-c-Ch
Confidence 122222 22235689999999999984 333333322100 001111111112211 1233333 3 23
Q ss_pred hhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 210 IHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 210 ~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
..-..+.+.+-.+.| +.+||. ||...... ..+. +..+ ..++-++.-+++..|.+|+|||+.
T Consensus 337 ~~l~~~~~~~G~dri--lfgSDy-P~~~~~~~---------~~~~-----~~~l-~~l~~~~~~~I~~~NA~rl~~l~~ 397 (423)
T 4dzi_A 337 DDLPELARVIGVDKI--LFGSDW-PHGEGLAS---------PVSF-----TAEL-KGFSESDIRKIMRDNALDLLGVQV 397 (423)
T ss_dssp SCHHHHHHHHCGGGB--CCCCCB-TSTTSCSS---------GGGG-----GGGC-TTSCHHHHHHHHTHHHHHHHC---
T ss_pred HHHHHHHHHcCcceE--EEecCC-CCccCccC---------HHHH-----HHHh-cCCCHHHHHHHHHHHHHHHHCCCc
Confidence 445677777755555 789996 88532110 0000 0101 246778889999999999999964
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.049 Score=50.63 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecC-CHHHHHHHHcccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHIT-TMDAVKFVESCKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvS-t~~sl~~i~~ak~~~v 175 (329)
..+...++.++++|+||++|+.+... ..| ..++ .+..+. ++.+.|+- + .+++..+++-+...
T Consensus 168 ~~f~aq~~~A~~~glPViiH~r~g~~-----a~~---~l~i-----L~e~~~~~~~vvi~H~~~s-~~~e~a~~~l~~G~ 233 (330)
T 3pnz_A 168 KTIRAVARAHHETKAPIHSHTEAGTM-----ALE---QIEI-----LKQENIPLEYLSIGHMDRN-LDPYYHKQVAKTGA 233 (330)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCC-----HHH---HHHH-----HHHTTCCGGGEEETTGGGS-CCHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCCeEEEeCCCCcC-----hHH---HHHH-----HHHcCCCCCeEEEecCCCC-CCHHHHHHHHHcCc
Confidence 56778888899999999999986321 011 1122 223343 47788984 3 22333333211222
Q ss_pred EEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCC-cCCccch-
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACG-CAGIYNA- 252 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~-~~Gi~~~- 252 (329)
+.+.+- .+++ +. +| ..+.-+.|.+.+..|-.| ++++|| +|+..--+ ++| .+|...+
T Consensus 234 ~i~~~g--------------~~t~-~~-~~--~~~~~~~l~~lv~~g~~drilleTD-~p~~~~~~--~~G~~~~~~~~~ 292 (330)
T 3pnz_A 234 FMSFDG--------------IAKI-KY-AP--ESARIAAILYLVSEGFEDQILVSGD-TARKTYYK--HYGHGPGLEYIA 292 (330)
T ss_dssp EEEECC--------------TTCT-TT-CC--HHHHHHHHHHHHHTTCGGGEEECCC-CCSGGGSH--HHHCCSTTTHHH
T ss_pred EEEEcc--------------Cccc-CC-CC--hHHHHHHHHHHHHcCCCCeEEEeCC-CCCCCCCC--ccCCCCCcchHH
Confidence 333220 0100 00 11 122233566666666443 356787 35421111 122 2354433
Q ss_pred hHHHHHHHHH-HHhcCCHHH-HHHHHhhhhhhhcCCC
Q 020186 253 PVALSLYAKV-FEEMGALDK-LEAFTSFNGPDFYGLP 287 (329)
Q Consensus 253 e~~lpll~~~-~~~~~~l~~-~v~~~s~nPAkifgl~ 287 (329)
...+|.+... -.+.++.++ +.+++..||+|+|+++
T Consensus 293 ~~~~~~l~~~a~~~Gis~ee~i~~~t~~Np~rlf~l~ 329 (330)
T 3pnz_A 293 KKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTFK 329 (330)
T ss_dssp HTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHhcCC
Confidence 3334444222 235779998 9999999999999985
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.21 Score=46.98 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEec-CCHHHHHHHHcccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHI-TTMDAVKFVESCKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~Hv-St~~sl~~i~~ak~~~v 175 (329)
..++...+.++++|+||++|+.+... ..| .+ +++ . +.|+ ++.|.|+ -+. ..+..+++-+.-+
T Consensus 193 k~frA~a~aa~etG~Pv~iHt~~~~~-----~~e--~l-~iL----~-eeG~~~~~vvi~H~~~~~-d~~~~~~~l~~G~ 258 (360)
T 3tn4_A 193 MFFRAAARAQKETGAVIITHTQEGTM-----GPE--QA-AYL----L-EHGADPKKIVIGHMCDNT-DPDYHRKTLAYGV 258 (360)
T ss_dssp HHHHHHHHHHHHHCCEEEEECSTTCC-----HHH--HH-HHH----H-HTTCCGGGEEECCGGGCC-CHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhCCcEEEEcCcccC-----CHH--HH-HHH----H-HcCCCCCceEEEcCCCCC-CHHHHHHHHHcCC
Confidence 56777888889999999999987632 011 11 222 2 2343 5788895 221 2233332211122
Q ss_pred EEEecchhhhcchhhhcCCCCCCc-eEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCC------CCCcCccccc-CCc
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPH-NYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSA------PHERGRKECA-CGC 246 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~-~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHa------Ph~~~eK~~~-~~~ 246 (329)
+.+ ||. +|.. +.-.|| +.+..+.|.+.++.|-.| ++|++|-+ |+...+.-.. .+.
T Consensus 259 yl~-------fD~-------iG~~~~~~~p~--d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~py~~p~p~r~~~~~ 322 (360)
T 3tn4_A 259 YIA-------FDR-------FGIQGMVGAPT--DEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPEPFAEMMKN 322 (360)
T ss_dssp EEE-------ECC-------TTCCCSTTCCC--HHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCHHHHHHTTT
T ss_pred EEE-------Ecc-------cccccccCCCC--hHHHHHHHHHHHHhcCcceEEEecCCCcccccCCCCCcccccccCCC
Confidence 222 221 1110 000121 123334566777777654 35678832 4432211000 011
Q ss_pred CCccch-hHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcC
Q 020186 247 AGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 247 ~Gi~~~-e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifg 285 (329)
+|..-+ ..++|.| ..+.++.+++-+++..||+|+|-
T Consensus 323 ~~y~~i~~~~ip~L---~~~Gvs~e~I~~i~~~NP~rlfs 359 (360)
T 3tn4_A 323 WHVEHLFVNIIPAL---KNEGIRDEVLEQMFIGNPAALFS 359 (360)
T ss_dssp CSTTHHHHTHHHHH---HHTTCCHHHHHHHHTHHHHHHHC
T ss_pred CCchhHHHHHHHHH---HHcCCCHHHHHHHHHHhHHHHhc
Confidence 232211 2233332 12467999999999999999983
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.028 Score=52.99 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHccc-CCceEEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCK-EGFVAAT 178 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak-~~~vt~E 178 (329)
..+...++.++++|+||++|+.+... +. .+.+++ .-......++.++|+-+...++..+++- +...+.+
T Consensus 169 ~~f~aq~~~A~e~glPViiH~r~gr~------a~--d~l~iL--~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~ 238 (363)
T 3ovg_A 169 KALEVAARTSILTGCPILVHTQLGTM------AL--EVAKHL--IGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLC 238 (363)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEETTCS------HH--HHHHHH--HHHTCCGGGEEEECGGGSCCHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCC------HH--HHHHHH--HhcCCCCCcEEEEcCCCCCCHHHHHHHHHHCCcEEE
Confidence 56778888899999999999986421 11 122333 1111122457899987423332222210 0111222
Q ss_pred ecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCCc-CCc--cchhH
Q 020186 179 VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACGC-AGI--YNAPV 254 (329)
Q Consensus 179 t~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~-~Gi--~~~e~ 254 (329)
|+.- +.+ +. +| +.+.-+.|.+.++.|-.| ++++|| +|+...-. +.+. .|. .+..
T Consensus 239 -------f~g~-------~~~-~~-~~--~~~ra~~l~~lv~~~p~drILleTD-ap~~~~l~--~~G~~~g~~~n~p~- 296 (363)
T 3ovg_A 239 -------FDGP-------DRV-KY-YP--DSLLAENIKYLVDKGLQKHITLSLD-AGRILYQR--NYGLTKGKQTFGLA- 296 (363)
T ss_dssp -------ECCT-------TCT-TT-CC--HHHHHHHHHHHHHTTCGGGEEECCC-CCSGGGSH--HHHHHTTEECCCTH-
T ss_pred -------ECCe-------ecc-cc-CC--hhHHHHHHHHHHHhcCCCeEEEeCC-CCCCcCCC--CCCccCCCCCCCcc-
Confidence 2110 000 00 11 122334666777767655 356787 46421110 1111 111 1211
Q ss_pred HHHH-HHHHH-HhcCCHHHHHHHHhhhhhhhcCCCCC
Q 020186 255 ALSL-YAKVF-EEMGALDKLEAFTSFNGPDFYGLPRN 289 (329)
Q Consensus 255 ~lpl-l~~~~-~~~~~l~~~v~~~s~nPAkifgl~~~ 289 (329)
.++. +...+ .+.++.+++.+++..||+|+|+++.+
T Consensus 297 ~l~~~~~~~a~~rGis~eei~~it~~Np~rlf~l~~~ 333 (363)
T 3ovg_A 297 YLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAFDEK 333 (363)
T ss_dssp HHHHTHHHHHHHHTCCHHHHHHHHTHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCc
Confidence 2222 22233 34789999999999999999999653
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.045 Score=48.98 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhHcCCcEE-EecCCCCCCCChhHHHHHHHHHHHHHHHHhcCC-CeEEEEecCCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLL-VHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQ-LKVVMEHITTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~-vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~-~~lhi~HvSt~~sl~~i~~ak~~~vt~ 177 (329)
..+.+.++.++++|.||+ +|+.+.. . .+.+++ .+... .++ |.|.-+. +.+.++++-+.
T Consensus 104 ~~F~~ql~lA~e~~lPviSiH~r~a~-------~---~~~~il----~~~~~~~~~-v~H~fsG-~~e~a~~~l~~---- 163 (254)
T 3gg7_A 104 AVFQHILRRCEDHGGRILSIHSRRAE-------S---EVLNCL----EANPRSGTP-ILHWYSG-SVTELRRAISL---- 163 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCH-------H---HHHHHH----HHCGGGEEE-EEETCCS-CHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCcH-------H---HHHHHH----HHcCCCCcE-EEEeCCC-CHHHHHHHHcC----
Confidence 457788889999999998 9998751 1 122222 22211 233 5585432 23333322101
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCC-CChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVL-KREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVAL 256 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPL-R~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~l 256 (329)
|-++-+++++ |+++-| .+.+.+--..| ++.||. |+... .|-.+-+..+
T Consensus 164 -------------------G~yis~~g~~~~~~~~~-~~v~~ip~drl--LlETD~-P~~~~--------rg~~n~P~~v 212 (254)
T 3gg7_A 164 -------------------GCWFSVGPTMVRTQKGA-ALIRSMPRDRV--LTETDG-PFLEL--------DGQAALPWDV 212 (254)
T ss_dssp -------------------TCEEEECHHHHTSHHHH-HHHHHSCGGGE--EECCCT-TTSEE--------TTEECCGGGH
T ss_pred -------------------CcEEEECcccCchHHHH-HHHHHcCCCeE--EEeCCC-Ccccc--------CCCCCCHHHH
Confidence 1222233322 333333 33343322343 788995 77421 1333333456
Q ss_pred HHHHHHH--HhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 257 SLYAKVF--EEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 257 pll~~~~--~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
+-.+..+ .+.++.+.+.+.+..|+.|+||+++
T Consensus 213 ~~v~~~iA~~~g~~~ee~~~~~~~N~~~lf~~~~ 246 (254)
T 3gg7_A 213 KSVVEGLSKIWQIPASEVERIVKENVSRLLGTVR 246 (254)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHCCCc
Confidence 6655443 2467999999999999999999975
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=94.29 E-value=1.4 Score=40.72 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=30.3
Q ss_pred CccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 248 GIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 248 Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
|-.+-...++..+..+. +.++++.+.+.+..|..|+||+.
T Consensus 282 g~rNeP~~v~~v~~~iA~l~g~~~eeva~~t~~Na~~lF~~~ 323 (325)
T 3ipw_A 282 QRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFPT 323 (325)
T ss_dssp TTCCCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCcCcHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHhCcC
Confidence 44444557777665443 47899999999999999999973
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=93.79 E-value=0.3 Score=45.07 Aligned_cols=158 Identities=11% Similarity=-0.023 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecC-CCCCCCChhHHHHHHHHHHHHHHHHhcCCC---eEEEEecC-CHHHHHHHHcccCCc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGE-VTDPIVDIFDREKVFIDTILQPLIQRLPQL---KVVMEHIT-TMDAVKFVESCKEGF 174 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaE-d~~~~~~~~~~E~~av~~~~~~~la~~~~~---~lhi~HvS-t~~sl~~i~~ak~~~ 174 (329)
..+...++.++++|+||++|++ +.. + +. ..+ .+.+..|. ++.|.|+. +. +.+..+++.+..
T Consensus 148 ~~f~~q~~lA~~~glPv~iH~~~~~r--------~--a~-e~l--~iL~~~g~~~~~~~i~H~f~~~-~~e~a~~~~~~G 213 (330)
T 2ob3_A 148 LVLKAAARASLATGVPVTTHTAASQR--------D--GE-QQA--AIFESEGLSPSRVCIGHSDDTD-DLSYLTALAARG 213 (330)
T ss_dssp HHHHHHHHHHHHHCCCEEEECCGGGT--------H--HH-HHH--HHHHHTTCCGGGEEECSGGGCC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCC--------C--HH-HHH--HHHHHcCcCcccEEEeCCCCCC-CHHHHHHHHhCC
Confidence 4577888899999999999996 221 1 11 222 22333454 45688985 32 234444332223
Q ss_pred eEEEecch-hhhc----chhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccC----
Q 020186 175 VAATVTPQ-HLVL----NRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECAC---- 244 (329)
Q Consensus 175 vt~Et~ph-hL~l----~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~---- 244 (329)
++.+.+-+ -.++ +..... ...+ +| ..+..+.|-++++.|-.| ++|.||- |+... ++
T Consensus 214 ~~i~~~~~G~~tf~~~~~~~~~~------~~~~-~~--~~~~~~~l~~~~~~~p~drilleTD~-p~~l~----~~~~~~ 279 (330)
T 2ob3_A 214 YLIGLDHIPYSAIGLEDNASASA------LLGI-RS--WQTRALLIKALIDQGYMKQILVSNDW-TFGFS----SYVTNI 279 (330)
T ss_dssp CEEEECCTTCCCTTCTTCHHHHH------HHCS-SC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSEEC----SSSTTH
T ss_pred CEEEeCCCccccccccccccccc------cccC-CC--HHHHHHHHHHHHHhCCCCeEEEeCCC-CCCcc----cccccC
Confidence 33333310 0111 000000 0001 11 123344577888888655 2478884 54111 11
Q ss_pred CcC---Ccc-chhHHHHHHH-HHHHhcCCHHHHHHHHhhhhhhhcC
Q 020186 245 GCA---GIY-NAPVALSLYA-KVFEEMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 245 ~~~---Gi~-~~e~~lpll~-~~~~~~~~l~~~v~~~s~nPAkifg 285 (329)
+.. ..+ +.-..+.-+. ....+.++++++.+.++.||+|+||
T Consensus 280 g~~~~~n~pn~~~~~~~~~ia~l~~~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 280 MDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp HHHHHHHCTTGGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHS
T ss_pred CCcccccCCCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 111 011 2111111111 2223568999999999999999998
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.11 Score=46.67 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVT 123 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~ 123 (329)
..+.+.++.++++|+||++|+.+.
T Consensus 110 ~~f~~ql~lA~e~~lPv~iH~r~~ 133 (261)
T 3guw_A 110 EVLKSQLELAKRMDVPCIIHTPRG 133 (261)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCSS
T ss_pred HHHHHHHHHHHHhCCeEEEEcCCC
Confidence 467788999999999999999864
|
| >2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1, putative metal-dependent hydrolase; HET: KCX MSE; 1.40A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=89.75 E-value=0.42 Score=44.96 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHH--hcCCCeEEEEecCCHHHHHHHHcccC-CceEEE
Q 020186 102 CVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ--RLPQLKVVMEHITTMDAVKFVESCKE-GFVAAT 178 (329)
Q Consensus 102 l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la--~~~~~~lhi~HvSt~~sl~~i~~ak~-~~vt~E 178 (329)
++.+++.++++|.++.+|+...+...+...+-...+..+ +. ++++.++.+.| ..+...++.+-++. .+++++
T Consensus 211 l~~~~e~a~e~glpv~iH~g~~d~~~~~~~~~p~~l~~l----l~~~~~P~lkiVl~H-g~~~~~~~~~l~~~~~nvy~d 285 (376)
T 2qpx_A 211 LYHVAPFIIAQDMPLQFHVGYGDADTDMYLGNPLLMRDY----LKAFTKKGLKVVLLH-CYPYHREAGYLASVFPNLYFD 285 (376)
T ss_dssp HHHHHHHHHHHTCCEEEEESCCCTTSCGGGCCGGGGHHH----HHHHGGGTCCEEEEE-CTTCHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCCCccccCHHHHHHH----HhcCCCCCCcEEEEC-CCccHHHHHHHHHhCCCEEEe
Confidence 445559999999999999986321111110101123332 34 78889999999 65333222221111 467777
Q ss_pred ecc
Q 020186 179 VTP 181 (329)
Q Consensus 179 t~p 181 (329)
++.
T Consensus 286 ~s~ 288 (376)
T 2qpx_A 286 ISL 288 (376)
T ss_dssp CTT
T ss_pred ccc
Confidence 665
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=87.97 E-value=0.66 Score=42.99 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHhhhhhhhcCCCC--C------cccEEEEec
Q 020186 265 EMGALDKLEAFTSFNGPDFYGLPR--N------TSKIKLTKI 298 (329)
Q Consensus 265 ~~~~l~~~v~~~s~nPAkifgl~~--~------dADlvi~~~ 298 (329)
..++++++++..+.|||+.+|++. | +|||+|+|.
T Consensus 324 ~g~~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~ 365 (382)
T 1yrr_A 324 CGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTP 365 (382)
T ss_dssp HCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECT
T ss_pred hCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCCCCEEEECC
Confidence 478999999999999999999942 3 799999954
|
| >2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural genomics, PSI, protein S initiative; 1.80A {Rhodopseudomonas palustris} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=85.92 E-value=1.1 Score=41.34 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=97.1
Q ss_pred CHHHHHHHH-hcCceeEEEEeeccc-cccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCC--C--Ch-hHH-HHH
Q 020186 64 SPDEIKLAR-KTGVVFAVKLYPAGA-TTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPI--V--DI-FDR-EKV 135 (329)
Q Consensus 64 ~~~el~~l~-~~G~v~~~K~f~~~~-~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~--~--~~-~~~-E~~ 135 (329)
..+||+.+. +.|+ .|+|+.+... +..+...++| ..++..++.++++|.+|.+|+.+.... . .. +.. +..
T Consensus 124 a~~eL~r~~~~~g~-~Gv~l~~~~~~~~~~~~~l~d--~~~~p~~~~a~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~ 200 (350)
T 2gwg_A 124 CIPELEKCVKEYGF-VAINLNPDPSGGHWTSPPLTD--RIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTT 200 (350)
T ss_dssp GHHHHHHHHHTSCC-CEEEECSCTTSSCCCSCCTTS--GGGHHHHHHHHHHTCCEEECCCC---------TTHHHHHHHH
T ss_pred HHHHHHHHHhccCC-eEEEECCCCCCccCCCCCCCC--HHHHHHHHHHHHcCCeEEECCCCCCcccccccccccchHHHH
Confidence 356888887 4574 6999876421 0001123445 778999999999999999999865310 0 00 111 222
Q ss_pred HHHHH-HHHHHHhcCCCeEEEEecCCH--HHH---HHH-Hccc-------C-CceEEEecchhhhcchhhhcCCCCCCce
Q 020186 136 FIDTI-LQPLIQRLPQLKVVMEHITTM--DAV---KFV-ESCK-------E-GFVAATVTPQHLVLNRNALFQGGLRPHN 200 (329)
Q Consensus 136 av~~~-~~~~la~~~~~~lhi~HvSt~--~sl---~~i-~~ak-------~-~~vt~Et~phhL~l~~~~~~~~~~~~~~ 200 (329)
++.+. +...+.++.+.++.+.|.... ..+ +.. ...+ . .+++++++.
T Consensus 201 a~~~li~~~v~~~~P~l~~vi~H~Gg~~p~~~~r~~~~~~~~~~~~l~~~~~~n~y~d~s~------------------- 261 (350)
T 2gwg_A 201 AFMQCVAGDLFKDFPELKFVIPHGGGAVPYHWGRFRGLAQEMKKPLLEDHVLNNIFFDTCV------------------- 261 (350)
T ss_dssp HHHHHHHSCHHHHCTTCCEEESGGGTTTGGGHHHHHHHHHHTTCCCHHHHTTTTEEEECCC-------------------
T ss_pred HHHHHHhcCccccCCCCcEEeccCCCcchhhHHHHHHHHHhccCCCcHHHHhhcEEEEecc-------------------
Confidence 22211 111355778899999999621 111 110 1011 0 233433331
Q ss_pred EEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhh
Q 020186 201 YCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSF 278 (329)
Q Consensus 201 k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~ 278 (329)
. ....-+.|.+.+-.+.| +++||. |+...+.. +. .| .. ++-....+. +.++-+..-+++..
T Consensus 262 -----~-~~~~l~~l~~~~g~dri--l~gSD~-P~~~~~~~-p~--~~-~~----~~~~~~~l~~~~~l~~~~~~~i~~~ 324 (350)
T 2gwg_A 262 -----Y-HQPGIDLLNTVIPVDNV--LFASEM-IGAVRGID-PR--TG-FY----YDDTKRYIEASTILTPEEKQQIYEG 324 (350)
T ss_dssp -----C-SHHHHHHHHHHSCGGGE--ECCCCC-SSSCCCEE-TT--TT-EE----TTCTHHHHHHCSSSCHHHHHHHHTH
T ss_pred -----c-CcHHHHHHHHHhCcccE--EEecCC-CCCcccCC-cc--cc-cc----hhhHHHHHHhccCCCHHHHHHHHHH
Confidence 0 11223345555534454 789995 77532211 00 01 00 111111222 25788999999999
Q ss_pred hhhhhcCC
Q 020186 279 NGPDFYGL 286 (329)
Q Consensus 279 nPAkifgl 286 (329)
|++|+||+
T Consensus 325 NA~rl~~~ 332 (350)
T 2gwg_A 325 NARRVYPR 332 (350)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHh
Confidence 99999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 329 | ||||
| d2eg6a1 | 343 | c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli | 3e-71 | |
| d1xrta2 | 310 | c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui | 9e-20 | |
| d2ftwa2 | 334 | c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas | 9e-05 | |
| d1gkra2 | 325 | c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au | 7e-04 | |
| d1gkpa2 | 335 | c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta | 0.001 | |
| d1ynya2 | 332 | c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR | 0.003 |
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Score = 222 bits (566), Expect = 3e-71
Identities = 177/312 (56%), Positives = 215/312 (68%), Gaps = 2/312 (0%)
Query: 14 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARK 73
YGRAIVMPNL PP+TT AAVAYR+ IL A+PA +FTPLMT YLTD+ P+E++
Sbjct: 32 IYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFN 91
Query: 74 TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDRE 133
GV A KLYPA ATTNS GVT + VLE M + MPLLVHGEVT +DIFDRE
Sbjct: 92 EGVFTAAKLYPANATTNSSHGVTS-VDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDRE 150
Query: 134 KVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQ 193
FI+++++PL QRL LKVV EHITT DA +V E +AAT+TPQHL+ NRN +
Sbjct: 151 ARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRDGNE-RLAATITPQHLMFNRNHMLV 209
Query: 194 GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253
GG+RPH YCLP+LKR IH+QA+ V SG + FLGTDSAPH R RKE +CGCAG +NAP
Sbjct: 210 GGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAP 269
Query: 254 VALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDI 313
AL YA VFEEM AL EAF S NGP FYGLP N + I+L + +V E+ + + +
Sbjct: 270 TALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTL 329
Query: 314 IPMFAGNTLEWQ 325
+P AG T+ W
Sbjct: 330 VPFLAGETVRWS 341
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 85.8 bits (211), Expect = 9e-20
Identities = 60/286 (20%), Positives = 94/286 (32%), Gaps = 20/286 (6%)
Query: 15 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKT 74
+ + MPN PPI T IL+ + L T +T EI
Sbjct: 32 FTTIVCMPNTNPPIDNTTVV----NYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSL 87
Query: 75 GVVFAVKLYPAGAT-TNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIF--- 130
V G+ +S L + M L +G + + V
Sbjct: 88 KEAGCVAFTDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGL 147
Query: 131 ---DREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATVTPQHLVLN 187
E I ++ + V ++H++T +++ +E KE V T L
Sbjct: 148 SSRAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLL 207
Query: 188 RNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE----CA 243
+ P L+++ R A++ V G TD APH+ KE
Sbjct: 208 FTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGI-IDCFATDHAPHQTFEKELVEFAM 266
Query: 244 CGCAGIYNA-PVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR 288
G G+ A P AL LY K + +L KL + N G+
Sbjct: 267 PGIIGLQTALPSALELYRK---GIISLKKLIEMFTINPARIIGVDL 309
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 41.1 bits (95), Expect = 9e-05
Identities = 33/294 (11%), Positives = 88/294 (29%), Gaps = 25/294 (8%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I + A +++ + + + +T + + EI + + F
Sbjct: 39 IDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSF 98
Query: 79 AVKLYPAGATTNSQDGVTDLFGKCVHV---------LEEMVEQNMPLLVHGEVTDPIVDI 129
+ + + + +F +C + +MV + ++ +T P
Sbjct: 99 KCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHE 158
Query: 130 FDREKVFIDTILQP--LIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLV 185
R + +I V + H+ ++ A + ++ V L
Sbjct: 159 LSRPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLG 218
Query: 186 LNRNALFQGGLRPHN--YCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE-- 241
++ + ++ R P ++ + + V+ + +GTD+ +K
Sbjct: 219 VDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMG 278
Query: 242 ------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR 288
G G+ + +++ V + TS + + PR
Sbjct: 279 KDDFTKIPNGVNGVEDR-MSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPR 331
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 44/297 (14%), Positives = 87/297 (29%), Gaps = 36/297 (12%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I MP PP TT A + ++ + EI+ G V
Sbjct: 37 IEMPITFPPTTTLDAFLEKKKQA-----GQRLKVDFALYGGGVPGNLPEIRKMHDAGAVG 91
Query: 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFID 138
A + D V+D G+ + +E+ ++VH E I + + K
Sbjct: 92 FKS-MMAASVPGMFDAVSD--GELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGG 148
Query: 139 TILQPLIQRLPQ------------------LKVVMEHITTMDAVKFVESCKEGFVAATVT 180
+ P ++++ H++ D V+ + +
Sbjct: 149 KDMAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCE 208
Query: 181 PQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK 240
LN + P+ P ++ + + +G G+D H K
Sbjct: 209 SGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTL-GSDHGGHPVEDK 267
Query: 241 E--------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRN 289
E G G+ + + + L V + +L++L +G+
Sbjct: 268 EPGWKDVWKAGNGALGLETS-LPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQ 323
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 38.0 bits (87), Expect = 0.001
Identities = 39/297 (13%), Positives = 78/297 (26%), Gaps = 23/297 (7%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
I M ++ F ++ + T +A
Sbjct: 37 IEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFK 96
Query: 79 AVKLYPAGATTNSQDGVTDLF-----GKCVHVLE---EMVEQNMPLLVHGEVTDPIVDIF 130
Y + + L G V E+V + L+ T P
Sbjct: 97 IFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEP 156
Query: 131 DREKVFIDTILQPLI--QRLPQLKVVMEHITTMDAVKFVESC--KEGFVAATVTPQHLVL 186
R + + H++ A+ + + + H +L
Sbjct: 157 SRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLL 216
Query: 187 NRNALFQGGLRPHNYCLPV-LKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRK----- 240
++ +GG+ Y + L+ + +++ + A+ G +GTD P + +K
Sbjct: 217 DKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQG-FIDTVGTDHCPFDTEQKLLGKE 275
Query: 241 ---ECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIK 294
G I + V L V + + S +GL I
Sbjct: 276 AFTAIPNGIPAIEDR-VNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIA 331
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 36.9 bits (84), Expect = 0.003
Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 30/296 (10%)
Query: 19 IVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78
+ K + +A + E A ++ + + + +E++ + +
Sbjct: 38 VDFCLTKKGESLKSAIATWHEKARGK--AVIDYGFHLMIAEANDQVLEELESVISSEGIT 95
Query: 79 AVKLYPAGATTNSQDGVTDL--------FGKCVHVLEE---MVEQNMPLLVHGEVTDPIV 127
++K++ A D T G V V E +++ + TDPI
Sbjct: 96 SLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIY 155
Query: 128 DIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEG-----FVAATVTPQ 182
+ R + L L ++ + V+ E V PQ
Sbjct: 156 HAYTRPP-EAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQ 214
Query: 183 HLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKE- 241
+L L+ + + Q Y RE Q V+ + +G+D P ++
Sbjct: 215 YLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKE 274
Query: 242 --------CACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGL-PR 288
G I + + + V + +L++ +S +G+ PR
Sbjct: 275 LGRGDFTKIPNGGPLIEDR-LTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPR 329
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 100.0 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 100.0 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 100.0 | |
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 100.0 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 100.0 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 100.0 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.94 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 99.53 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.52 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.01 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 98.8 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 98.75 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 98.5 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 98.33 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 98.21 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 98.17 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 98.15 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 98.15 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 98.04 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 97.94 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 97.28 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 96.83 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 96.83 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 96.65 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 96.56 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 96.2 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 95.87 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 95.74 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 95.59 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 95.43 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 95.25 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 94.99 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 94.61 | |
| d2gwga1 | 342 | 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas | 94.27 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 94.24 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 92.48 | |
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 92.07 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 87.68 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 86.67 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 85.31 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 84.13 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 82.37 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 81.26 |
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-67 Score=497.51 Aligned_cols=316 Identities=53% Similarity=0.837 Sum_probs=271.1
Q ss_pred cchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEEeecc
Q 020186 7 LPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKLYPAG 86 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~f~~~ 86 (329)
-.+|++||+|||++||||+||+++.+.++.+++++.+.....++|.++++++.+......++.+....|...++|.|+..
T Consensus 25 t~aa~agG~t~v~~MPNT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (343)
T d2eg6a1 25 VVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPAN 104 (343)
T ss_dssp HHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEECCTTCCHHHHHHHHHTTSEEEEEECCCC
T ss_pred HHHHHhccCCEEEECCCCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeeeccCCCChhhhhhhhhccccccccccccc
Confidence 34788899999999999999999999999888876654332267788777765545566777777777777788999876
Q ss_pred ccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCCh--hHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHH
Q 020186 87 ATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDI--FDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAV 164 (329)
Q Consensus 87 ~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~--~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl 164 (329)
.+++.+..+.+. ..+++.++..+..+..+..|+|+.+..... .++|..++.+.+ .+++++++++||+|+||++++
T Consensus 105 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~eae~~~~~~~~--~l~~~~~~~~Hi~HiSt~~~v 181 (343)
T d2eg6a1 105 ATTNSSHGVTSV-DAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEP--LRQRLTALKVVFEHITTKDAA 181 (343)
T ss_dssp TTSCTTTCCSCG-GGGHHHHHHHHHHTCCEEECCCCCCTTSCGGGHHHHHHHHTHHH--HHHHCTTCCEEECSCCSHHHH
T ss_pred hhccccccccch-HHHHHHHHHHHHhCchhhhcCccccccccccchhhhhHHHHHHH--HHhhccCceEEEEecchhHHH
Confidence 665555556666 788999999999999999999987654333 466777777777 899999999999999999999
Q ss_pred HHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccC
Q 020186 165 KFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECAC 244 (329)
Q Consensus 165 ~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~ 244 (329)
++++++| .+||||||||||+|+.+++...++++++|||||||+++||++||+++.+|.|+++|+||||||+.++|..++
T Consensus 182 ~~ir~~~-~~vt~EvtPHhL~L~~~d~~~~~~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~~~~ 260 (343)
T d2eg6a1 182 DYVRDGN-ERLAATITPQHLMFNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSC 260 (343)
T ss_dssp HHHHTSC-TTEEEEECHHHHHCCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSSTT
T ss_pred HHHHhcC-CCcceeecCcHHHhhhhhhhcCCCccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCcccccccccc
Confidence 9999887 789999999999999999875555678999999999999999999999998843899999999999998777
Q ss_pred CcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCCCcccEEEEecceeecCCccCcCCcccccCC-CcEEE
Q 020186 245 GCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPRNTSKIKLTKIPWKVPEAFSFSFGDIIPMFA-GNTLE 323 (329)
Q Consensus 245 ~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~~dADlvi~~~~~~v~~~~~~s~~~~spf~~-G~~l~ 323 (329)
..+|++|+|+.+|++++++.++++|++++++||+||||||||+.+++.|++++++|+|+++.+.||++|||| + |++|+
T Consensus 261 ~~~g~~g~e~~l~l~l~~~~~~~~L~~lv~~~S~nPaki~gL~~~kg~I~~~~~~~~v~~~~~~sk~~~tPf-~~g~~l~ 339 (343)
T d2eg6a1 261 GCAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLVPF-LAGETVR 339 (343)
T ss_dssp BCCCCCCTTTHHHHHHHHHHHTTCGGGHHHHHHTHHHHHHTCCCCCSEEEEECCCEECCSCEECSSSEECCT-TTTCEES
T ss_pred cccccCChHHHHHHHHHHHHhcCCHHHHHHHHhHhHHHHhCCCCCCCeEEEecCceecCccccCCCCCeEec-CCCCccc
Confidence 778999999999999998888999999999999999999999654577887899999999999999999999 8 99999
Q ss_pred EEEe
Q 020186 324 WQPS 327 (329)
Q Consensus 324 G~v~ 327 (329)
|+|.
T Consensus 340 w~vk 343 (343)
T d2eg6a1 340 WSVK 343 (343)
T ss_dssp CEEC
T ss_pred eeeC
Confidence 9984
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=100.00 E-value=5e-68 Score=500.87 Aligned_cols=276 Identities=12% Similarity=0.087 Sum_probs=234.3
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..|||+||||||++|||+.|++++.+.++.+.+++++.+. |||++|++++-..+...+++..+.+.|+ ++||+
T Consensus 22 ~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~--~d~~~~~~~~~~~~~~~~el~~~~~~Gv-~~~k~ 98 (330)
T d1nfga2 22 FATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSA--IDYGYHIIVLDPTDSVIEELEVLPDLGI-TSFKV 98 (330)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCS--SEEEEEEECSSCCHHHHHHTTTGGGGTC-CEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCe--eeecceEEEeccchhhHHHHhhhhhhcc-cceee
Confidence 45889999999999999999999999999999999888877665 9999998752111223456777788894 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
||++. +..+.|. ..++++|++++++|.++++||||+.++. .+..+|..++.|++
T Consensus 99 ~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~av~r~~- 172 (330)
T d1nfga2 99 FMAYR----GMNMIDD-VTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARAL- 172 (330)
T ss_dssp ESSST----TTTBCCH-HHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHH-
T ss_pred ecccc----ccCCCCc-HHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhcccccChHHHHHHHHHHH-
Confidence 99642 2234455 8899999999999999999999975421 12478999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+++|+|+||+||||++++++|++||+ .+||||||||||+||++++.... .++++|||||||+++||++||++|
T Consensus 173 -~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l 251 (330)
T d1nfga2 173 -ALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNAL 251 (330)
T ss_dssp -HHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHH
T ss_pred -HHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccccCceeeecCcCCcHHHHHHHhhhh
Confidence 89999999999999999999999999987 89999999999999999986421 367899999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCc----ccccCC--cCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 220 TSGSRKFFLGTDSAPHERGR----KECACG--CAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~e----K~~~~~--~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
++|.|| +|+||||||+.++ |..+|. ++|++|+|++||+||+.++ ++++|+++++++|+||||+||| |+|
T Consensus 252 ~dG~Id-~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~~~v~~~~l~l~~~v~~~S~nPAki~gL~p~K 328 (330)
T d1nfga2 252 RNGVFE-TVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQK 328 (330)
T ss_dssp HTTCCS-CEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHTTCTTTS
T ss_pred cCCcee-eecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999 9999999999643 334553 4599999999999998665 5789999999999999999999 664
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=3.2e-67 Score=494.20 Aligned_cols=274 Identities=18% Similarity=0.210 Sum_probs=239.2
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
+-||..||++||||||++||||.|++++.+.+..+.+++++.+. |||++|+++ . +.+.+++..+.+.|+ .+||.
T Consensus 21 ~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~--~-~~~~~~~~~~~~~g~-~~~~~ 94 (325)
T d1gkra2 21 FELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLK--VDFALYGGG--V-PGNLPEIRKMHDAGA-VGFKS 94 (325)
T ss_dssp HHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS--SEEEEEEEC--C-TTCHHHHHHHHHTTC-CEEEE
T ss_pred HHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhccCCc--ccccccccc--c-cccHHHHHhhhhccc-ceecc
Confidence 34788999999999999999999999999999999999888776 999999875 3 446778888888895 59999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
|+...+.+ .....++ ..++++|++++++|.++++||||.+++. .+..+|..++.|++
T Consensus 95 ~~~~~~~~-~~~~~~d-~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~r~~- 171 (325)
T d1gkra2 95 MMAASVPG-MFDAVSD-GELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRAL- 171 (325)
T ss_dssp ESSCSBTT-TBCBCCH-HHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHH-
T ss_pred ccccccCC-ccccccH-HHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccccccCchHHHHHHHHHHH-
Confidence 98764433 2223344 8899999999999999999999976431 12368999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVT 220 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~ 220 (329)
.+|+++++|+||+|+||++++++|++||+ .+||||||||||+||++++.. +|+++|||||||+++||++||++|+
T Consensus 172 -~la~~~~~~~hi~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~--~~~~~k~~PPlR~~~Dr~aL~~al~ 248 (325)
T d1gkra2 172 -LLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER--IGPYMKVAPPVRSAEMNIRLWEQLE 248 (325)
T ss_dssp -HHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH--HGGGGCCSSCCCCHHHHHHHHHHHH
T ss_pred -HHhhhcCcceeccccccHHHHHhhhhhhhcCCceEEeecccccccchhhhhc--cCcccccchhhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999986 899999999999999999873 6899999999999999999999999
Q ss_pred cCCCCeEEecCCCCCCcCcccccC-----CcCCccchhHHHHHHHHH-H-HhcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 221 SGSRKFFLGTDSAPHERGRKECAC-----GCAGIYNAPVALSLYAKV-F-EEMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 221 ~G~Id~~i~SDHaPh~~~eK~~~~-----~~~Gi~~~e~~lpll~~~-~-~~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
+|+|| +|+||||||+.++|+.++ .++|++|+|++||++|+. + +++++|++++++||+||||+||| |+|
T Consensus 249 ~G~id-~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v~~~s~nPAki~gl~p~K 324 (325)
T d1gkra2 249 NGLID-TLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQK 324 (325)
T ss_dssp HTCCC-EECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHHHTCTTTS
T ss_pred cCcce-EEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCC
Confidence 99999 999999999999998643 246999999999999964 3 35789999999999999999999 664
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=100.00 E-value=1.4e-66 Score=491.24 Aligned_cols=277 Identities=15% Similarity=0.128 Sum_probs=235.3
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..|||+||||||++||||.|++++.+.++.+++++++.+. |||++|++++...+....|+..+...+++.+||+
T Consensus 22 ~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~~~~~~~~~~el~~~~~~~g~~~~k~ 99 (332)
T d1ynya2 22 FFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAV--IDYGFHLMIAEANDQVLEELESVISSEGITSLKV 99 (332)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTCS--SEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccCc--cceeeEEEEeccccchhHHHHHHHhhhcccceee
Confidence 35788999999999999999999999999999999998887665 9999998762111223457777776655789999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
|+.+ ++..+.|+ ..++++|++++++|.++++||||.+++. .+..+|..++.|++
T Consensus 100 ~~~~----~~~~~~d~-~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~r~~- 173 (332)
T d1ynya2 100 FMAY----KNVFQADD-ETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAI- 173 (332)
T ss_dssp ESCS----TTTTCCCH-HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHH-
T ss_pred eecc----ccccccCH-HHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccchhhHHHHHHHHHH-
Confidence 9864 23345566 8999999999999999999999976420 12478999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+|+++|+|+||+|+||++++++|+++|+ .+||||||||||+||++++...+ .|+++|||||||+++||++||++|
T Consensus 174 -~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~PPLRs~~dr~aL~~al 252 (332)
T d1ynya2 174 -ALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSAL 252 (332)
T ss_dssp -HHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSSGGGGGCCSSCCCCTTHHHHHHHHH
T ss_pred -HhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhccCceeEecCccccHHHHHHHHHHH
Confidence 99999999999999999999999999986 79999999999999999886421 257899999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCcccc----cCC--cCCccchhHHHHHHHHH-H-HhcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 220 TSGSRKFFLGTDSAPHERGRKEC----ACG--CAGIYNAPVALSLYAKV-F-EEMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~~----~~~--~~Gi~~~e~~lpll~~~-~-~~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
++|.|| +|+|||+||+.++|.. +|. ++|++|+|++||+||+. + +++++|+++++++|+||||+||| |+|
T Consensus 253 ~~G~id-~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~lsl~~~v~~~s~nPAki~GL~p~K 330 (332)
T d1ynya2 253 KNGILQ-TVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRK 330 (332)
T ss_dssp HTTSSC-EECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHHTTCTTTS
T ss_pred hcCCee-EEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCC
Confidence 999999 9999999999877632 343 46999999999999974 3 35789999999999999999999 664
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=9.8e-66 Score=493.91 Aligned_cols=274 Identities=13% Similarity=0.137 Sum_probs=220.6
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHH-----HHHhhCCCCccEEEEEEEEeCCCCCH---HHHHH----
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRE-----SILKALPASSNFTPLMTLYLTDTTSP---DEIKL---- 70 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~-----~~~~~~~~~vd~~~~~~~~~~~~~~~---~el~~---- 70 (329)
|-||..|||+||||||++|||+.|+.++++.+....+ +++..+. |||+||+.++ +..... .++.+
T Consensus 23 ~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~--vdy~~~~~~~-~~~~~~~~~~el~~~~~~ 99 (384)
T d2fvka2 23 MEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLY--CDYGLHLILF-QIEKPSVEARELLDVQLQ 99 (384)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCS--SEEEEEEECC-CCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHHHHHHHhcCcc--ceeeEEEEEe-CCCCccchHHHHHhHHHH
Confidence 4578899999999999999999999887666554332 2222233 9999998763 112222 22222
Q ss_pred --HHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------C
Q 020186 71 --ARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------D 128 (329)
Q Consensus 71 --l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~ 128 (329)
+.+.| +.+||+||.+. +..+++ ..++++|++++++|.++++||||++++. .
T Consensus 100 ~~~~~~G-v~~~k~f~~~~----~~~~~~--~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~g~~~~~~~~~~r 172 (384)
T d2fvka2 100 AAYNDYG-VSSVKMFMTYP----GLQISD--YDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSR 172 (384)
T ss_dssp HHHHHHC-CCEEEEESSST----TTBCCH--HHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTS
T ss_pred HHcccCc-ccccceecccc----ccccCH--HHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhhcCCCChhhccccc
Confidence 23457 57999999642 333444 7899999999999999999999976431 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcC-------------
Q 020186 129 IFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQ------------- 193 (329)
Q Consensus 129 ~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~------------- 193 (329)
+..+|..++.|++ .+|+++|+|+||+|+||++++++|++||+ .+||||||||||+||++.+..
T Consensus 173 P~~aE~~av~r~~--~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~~~~~~~~~~~ 250 (384)
T d2fvka2 173 PSIVEGEATNRAI--TLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGI 250 (384)
T ss_dssp CHHHHHHHHHHHH--HHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--------CCSC
T ss_pred ccchhhHHHHHHH--HHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhccccccccccccccc
Confidence 2478999999999 89999999999999999999999999987 899999999999999875421
Q ss_pred ---------------CCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCccccc---------------
Q 020186 194 ---------------GGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECA--------------- 243 (329)
Q Consensus 194 ---------------~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~--------------- 243 (329)
...|+++|||||||+++||++||++|++|+|| +|+||||||+.++|..+
T Consensus 251 ~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id-~IaSDHaP~~~~eK~~~~~~~~~~~~~~~~~~ 329 (384)
T d2fvka2 251 DLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFT-IVGSDHCSYNYYEKTSTASKHRAFDPENNKNG 329 (384)
T ss_dssp CGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCS-EECCCBCCCBSSCCSSTTBGGGGEEGGGTEES
T ss_pred ccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCcee-EEecCCCCCCHHHhcccccccccccccccccC
Confidence 12468899999999999999999999999999 99999999999999642
Q ss_pred -CC--cCCccchhHHHHHHHHH-H-HhcC-CHHHHHHHHhhhhhhhcCC-CCC
Q 020186 244 -CG--CAGIYNAPVALSLYAKV-F-EEMG-ALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 244 -~~--~~Gi~~~e~~lpll~~~-~-~~~~-~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
|. ++|++|+|++||+||+. + ++++ ||+++|++||+||||+||| |+|
T Consensus 330 df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~K 382 (384)
T d2fvka2 330 EFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQK 382 (384)
T ss_dssp CGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTS
T ss_pred ccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHHhCCCCCC
Confidence 32 35999999999999974 3 3444 8999999999999999999 765
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=100.00 E-value=6.2e-65 Score=480.55 Aligned_cols=276 Identities=14% Similarity=0.077 Sum_probs=236.4
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..||++||||||+||||+.|++++.+.++.+++++++.+. |||++|++++..+.....+|.+|.+.|+ ++||+
T Consensus 21 ~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~~~~~~~~~~el~~l~~~G~-~~~k~ 97 (335)
T d1gkpa2 21 HETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSY--CDYTFHMAVSKFDEKTEGQLREIVADGI-SSFKI 97 (335)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCS--SEEEEEEECCCCCTTHHHHHHHHHHTTC-CEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCCc--cceeeEEEEeccccccHHHHHHHHhhhc-ccccc
Confidence 45889999999999999999999999999999999988877665 9999998863223345678999999994 69999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
|+++. +....|+ ..++++|++++++|.++++||||+.+.. .+..+|.+++.|++
T Consensus 98 ~~~~~----~~~~~d~-~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~E~~av~r~~- 171 (335)
T d1gkpa2 98 FLSYK----NFFGVDD-GEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFA- 171 (335)
T ss_dssp EECST----TTTBCCH-HHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHH-
T ss_pred ccccC----CCccCCH-HHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchhhhhHHHHHHHHH-
Confidence 99642 2333455 8999999999999999999999976420 12478999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC-CCCceEEcCCCCChhhHHHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG-LRPHNYCLPVLKREIHRQAVVSAV 219 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~-~~~~~k~~PPLR~~~dr~aLw~al 219 (329)
.+++++|+|+||+||||++++++|+++|+ .+||||||||||+|+++++...+ ++.++|||||||+++||++||++|
T Consensus 172 -~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~~~~~k~~PPlRs~~d~~~L~~al 250 (335)
T d1gkpa2 172 -TFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDAL 250 (335)
T ss_dssp -HHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHHHHHH
T ss_pred -HHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCchhcceecccCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999986 89999999999999999886421 124789999999999999999999
Q ss_pred HcCCCCeEEecCCCCCCcCcccc---cC--CcCCccchhHHHHHHHHHH-H-hcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 220 TSGSRKFFLGTDSAPHERGRKEC---AC--GCAGIYNAPVALSLYAKVF-E-EMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 220 ~~G~Id~~i~SDHaPh~~~eK~~---~~--~~~Gi~~~e~~lpll~~~~-~-~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
++|+|| +|+|||+||+.++|.. +| .++|++|+|++||+||+.. + ++++|++++++||+||||+||| |+|
T Consensus 251 ~~G~id-~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~~~v~~~S~nPAri~Gl~~~K 327 (335)
T d1gkpa2 251 AQGFID-TVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRK 327 (335)
T ss_dssp HTTSSC-EEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHHTTCTTTS
T ss_pred hcCCcc-EEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999 9999999999999964 34 2459999999999999754 3 4789999999999999999999 553
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=2.8e-65 Score=482.78 Aligned_cols=277 Identities=13% Similarity=0.079 Sum_probs=233.8
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..|||+||||||++||||.|++++.+.++.+++++++.+. |||.+|++++.+.+...+++..|.+.+.+.+||+
T Consensus 23 ~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~~--~d~~~~~~~~~~~~~~~~e~~~l~~~~g~~~~k~ 100 (334)
T d2ftwa2 23 FDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN--CDYSLHVAITWWSEQVSREMEILVKERGVNSFKC 100 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCS--SEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCCc--ceeeEEEeecCcchhhhHhHHHHHHhcCccccce
Confidence 45888999999999999999999999999999999998887666 9999999863222234567777765534679999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
||.+. .+..++| ..++++|++++++|.++++||||+.+.. .+..+|..++.|++
T Consensus 101 ~~~~~---~~~~~~~--~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~r~~- 174 (334)
T d2ftwa2 101 FMAYK---NSFMVTD--QEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAI- 174 (334)
T ss_dssp ESSCT---TTTBCCH--HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHH-
T ss_pred eeccc---ccccccc--HHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCcccccccCcHHHHHHHHHHHH-
Confidence 99642 2334454 7899999999999999999999876431 12468999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCC--CCCceEEcCCCCCh-hhHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGG--LRPHNYCLPVLKRE-IHRQAVVS 217 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~--~~~~~k~~PPLR~~-~dr~aLw~ 217 (329)
.+|+++|+|+||+||||++++++|++||+ .+||||||||||+||++++.... .+..+||+||||++ +||++||+
T Consensus 175 -~la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~~~~~~~PPlR~~~~d~~~L~~ 253 (334)
T d2ftwa2 175 -VIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMD 253 (334)
T ss_dssp -HHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHH
T ss_pred -HHHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhccceEeeccccccHhhhhhHHH
Confidence 89999999999999999999999999986 89999999999999999885311 13578999999976 68999999
Q ss_pred HHHcCCCCeEEecCCCCCCcCcccc---cCC--cCCccchhHHHHHHHHH-HH-hcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKEC---ACG--CAGIYNAPVALSLYAKV-FE-EMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~---~~~--~~Gi~~~e~~lpll~~~-~~-~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
+|++|+|| +|+||||||+.++|.. +|. ++|++|+|++||+||+. ++ ++++|++++++||+||||+||| |+|
T Consensus 254 ~l~~G~Id-~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g~lsl~~~v~~~s~nPAki~gL~p~K 332 (334)
T d2ftwa2 254 YLARGDLD-CVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRK 332 (334)
T ss_dssp HHHHTSSC-CCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTS
T ss_pred HhhCCCcc-ceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCC
Confidence 99999999 9999999999999975 443 46999999999999974 33 4789999999999999999999 764
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-64 Score=478.45 Aligned_cols=277 Identities=12% Similarity=0.076 Sum_probs=234.1
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCceeEEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVFAVKL 82 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~~~K~ 82 (329)
|-||..||++||||||++||||.|++++.+.++.+.+++++.+. |||.+|++++...+...+++.+|.+.+.+.+||+
T Consensus 23 ~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~s~--~d~~~~~~~~~~~~~~~~el~~l~~~~g~~~~ki 100 (334)
T d1kcxa2 23 FFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSC--CDYSLHVDITSWYDGVREELEVLVQDKGVNSFQV 100 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHCS--SEEEEEEEECCCCTTHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCc--ceeeEeeeeccCCcchHHHHHHHHHhccCceeee
Confidence 45889999999999999999999999999999999999888777 9999999984333344678888876644679999
Q ss_pred eeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC--------------------ChhHHHHHHHHHHHH
Q 020186 83 YPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV--------------------DIFDREKVFIDTILQ 142 (329)
Q Consensus 83 f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~--------------------~~~~~E~~av~~~~~ 142 (329)
||++ ++....++ ..|+++|++++++|+++++||||.++.. .+..+|..++.|++
T Consensus 101 ~~~~----~~~~~~~~-~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~ai~r~~- 174 (334)
T d1kcxa2 101 YMAY----KDLYQMSD-SQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAI- 174 (334)
T ss_dssp ESCS----TTTTCCCH-HHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHH-
T ss_pred eecc----CCCcccCH-HHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCCCCHHHHHHHHHHHH-
Confidence 9964 22233454 8899999999999999999999976420 12478999999999
Q ss_pred HHHHhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCC--CCceEEcCCCC-ChhhHHHHHH
Q 020186 143 PLIQRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGL--RPHNYCLPVLK-REIHRQAVVS 217 (329)
Q Consensus 143 ~~la~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~--~~~~k~~PPLR-~~~dr~aLw~ 217 (329)
.+|+++|+|+||+||||++++++|+++|+ .++|||||||||+|+++++...+. +..++++||+| +++||++||+
T Consensus 175 -~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~~~~~~~pPlr~~~~d~eaL~~ 253 (334)
T d1kcxa2 175 -AIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTS 253 (334)
T ss_dssp -HHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHH
T ss_pred -HHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHhcceEeeeccCchhhhHHHHHH
Confidence 99999999999999999999999999987 899999999999999888864210 13466677766 7889999999
Q ss_pred HHHcCCCCeEEecCCCCCCcCccccc---C--CcCCccchhHHHHHHHHH-HH-hcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 218 AVTSGSRKFFLGTDSAPHERGRKECA---C--GCAGIYNAPVALSLYAKV-FE-EMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 218 al~~G~Id~~i~SDHaPh~~~eK~~~---~--~~~Gi~~~e~~lpll~~~-~~-~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
+|++|+|| +|+|||+||+.++|..+ | .++|++|+|++||+||+. ++ +++||++++++||+||||+||| |+|
T Consensus 254 ~l~~G~Id-~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g~isl~~~v~~~s~nPA~i~gL~p~K 332 (334)
T d1kcxa2 254 LLACGDLQ-VTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRK 332 (334)
T ss_dssp HHHHTSSC-CCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTTTS
T ss_pred HhhcCCcc-eEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999 99999999999999754 3 245999999999999974 33 5789999999999999999999 764
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=3.1e-64 Score=470.43 Aligned_cols=270 Identities=19% Similarity=0.229 Sum_probs=204.9
Q ss_pred eecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCceeEEE
Q 020186 3 WITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVVFAVK 81 (329)
Q Consensus 3 ~~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v~~~K 81 (329)
|-||..||++||||||++|||+.|++++.+.++.+.++++..+. +||.++++++.+ .+....++..+...|+ |
T Consensus 20 ~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~ 93 (310)
T d1xrta2 20 IESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL--CRVLPTGTITKGRKGKEIADFYSLKEAGC----V 93 (310)
T ss_dssp HHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS--SEEEECBCSBGGGCSSSBCCHHHHHHHTC----C
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccCC--cccccceeeccCCccchhhhhhhcccCcE----E
Confidence 45788999999999999999999999999999998888877766 899999887533 3344556777766663 5
Q ss_pred EeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC----------------ChhHHHHHHHHHHHHHHH
Q 020186 82 LYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV----------------DIFDREKVFIDTILQPLI 145 (329)
Q Consensus 82 ~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~----------------~~~~~E~~av~~~~~~~l 145 (329)
.|+. ++..+.|. ..++++|++++++|.++++||||..+.. .+..+|..++.|++ .+
T Consensus 94 ~f~~-----~~~~~~d~-~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~~~~~~~~~~~~~~rp~~~E~~ai~r~~--~l 165 (310)
T d1xrta2 94 AFTD-----DGSPVMDS-SVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDG--IL 165 (310)
T ss_dssp CBCC-----TTSCCCCH-HHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------CHHHHHHHHH--HH
T ss_pred EEEC-----CCCCccCH-HHHHHHHHHhhhhhhhhhhccchhhhhhhhhhhhhcccccCccccchHHHHHHHHHHH--HH
Confidence 6653 33445566 8999999999999999999999976542 12467889999998 89
Q ss_pred HhcCCCeEEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCC
Q 020186 146 QRLPQLKVVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGS 223 (329)
Q Consensus 146 a~~~~~~lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~ 223 (329)
++++++|+||+|+||++++++|+++|+ .+||||||||||+|+++++. +.++++||+||||+++||++||++|++|.
T Consensus 166 a~~~~~~~~i~HiSt~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~--~~~~~~k~~PplR~~~d~~aL~~al~~G~ 243 (310)
T d1xrta2 166 AQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVL--NSGANARVNPPLRKKEDRLALIEGVKRGI 243 (310)
T ss_dssp HHHHCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC------------------------CCHHHHHHHHHHTC
T ss_pred HhhcCCeeeccccchHHHHHHHHHHHHcCCceecchHHHHhhccccccc--cccchhhhcccCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 89999999999999999886 35889999999999999999999999999
Q ss_pred CCeEEecCCCCCCcCcccc-cCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCCCC
Q 020186 224 RKFFLGTDSAPHERGRKEC-ACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLPRN 289 (329)
Q Consensus 224 Id~~i~SDHaPh~~~eK~~-~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~~~ 289 (329)
|| +|+||||||+.++|+. .+.++|++|+|++||+||+.++ ++++|+++++++|+||||+|||++|
T Consensus 244 id-~i~SDHaPh~~~~K~~~~~~~~G~~g~e~~lp~l~~~v~~g~l~l~~~v~~~s~npAki~gL~~G 310 (310)
T d1xrta2 244 ID-CFATDHAPHQTFEKELVEFAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIGVDLG 310 (310)
T ss_dssp SC-EECCCBCCCCC-----------CCCCGGGHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTCSCS
T ss_pred Ce-EEecCCCCCCHHHccCcccCCCCceeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 99 9999999999999964 2356799999999999998665 4789999999999999999999865
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.94 E-value=5.7e-29 Score=228.53 Aligned_cols=263 Identities=8% Similarity=-0.020 Sum_probs=176.9
Q ss_pred ecccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeC-CCCCHHHHHHHHhcCce-----
Q 020186 4 ITILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLT-DTTSPDEIKLARKTGVV----- 77 (329)
Q Consensus 4 ~~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~el~~l~~~G~v----- 77 (329)
++.+.+|++||||||++|.+.. ...+.+.+....++...... +++++|.....+ .+...+++.++...+..
T Consensus 50 ~~~l~~a~~~GvttvVd~~~~~-~~~d~~~l~~~~~~~~~~~~--~~~g~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (331)
T d1i0da_ 50 VRGLRRARAAGVRTIVDVSTFD-IGRDVSLLAEVSRAADVHIV--AATGLWFDPPLSMRLRSVEELTQFFLREIQYGIED 126 (331)
T ss_dssp HHHHHHHHHTTCCEEEECCCGG-GTCCHHHHHHHHHHHTCEEE--CEEECCSCCCHHHHTCCHHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHcCCCEEEEcCCCC-CcCCHHHHHHHHHhcCCCEE--EEEEEecCcCcccCccCHHHHHHHHHHhhhhhhcc
Confidence 3567788999999999995333 33455545444333222111 455544221101 12334555554432111
Q ss_pred -----eEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCe
Q 020186 78 -----FAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLK 152 (329)
Q Consensus 78 -----~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~ 152 (329)
...|.+... ..... .. +.+...++.++++|.++.+|+.... .+...+.+.+ ..++..+.+
T Consensus 127 ~~~~~~~~~~~~~~----~~~~~-~~-~~~~~~~~~a~~~g~pv~~h~~~~~-------~~~~~~~~~~--~~~~~~~~~ 191 (331)
T d1i0da_ 127 TGIRAGIIKVATTG----KATPF-QE-LVLKAAARASLATGVPVTTHTAASQ-------RDGEQQAAIF--ESEGLSPSR 191 (331)
T ss_dssp TTBCCSEEEEECSS----SCCHH-HH-HHHHHHHHHHHHHCCCEEEECCGGG-------THHHHHHHHH--HHTTCCGGG
T ss_pred ccCccceeeccccc----cccHH-HH-HHHHHHHHHHHHhCCeEEeeccchh-------hhhhhhhhhh--hhcccCCcc
Confidence 012222211 00111 11 5677788889999999999998642 3455666666 678888999
Q ss_pred EEEEecCCHHHHHHHHcccC--CceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEec
Q 020186 153 VVMEHITTMDAVKFVESCKE--GFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGT 230 (329)
Q Consensus 153 lhi~HvSt~~sl~~i~~ak~--~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~S 230 (329)
+||+|+++.++++.++++++ ..+++|+||||+++.+++... .+...+++||+|++.+|++||+++.++ . +++|
T Consensus 192 ~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~l~~g~~d~--i-~~~t 266 (331)
T d1i0da_ 192 VCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASA--SALLGIRSWQTRALLIKALIDQGYMKQ--I-LVSN 266 (331)
T ss_dssp EEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTTCTTCHHH--HHHHCSSCHHHHHHHHHHHHHTTCGGG--E-EECC
T ss_pred eEEEecCCcchHHHHHHHHhcCCceeecceeeeccchhhhccc--cCCccCCChhhhHHHHHHHHHhcCCCC--E-EECC
Confidence 99999999999999988865 789999999999998877653 366889999999999999999987653 2 7999
Q ss_pred CCCCCCcC---cccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCC-CCC
Q 020186 231 DSAPHERG---RKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGL-PRN 289 (329)
Q Consensus 231 DHaPh~~~---eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl-~~~ 289 (329)
||.+++.. .|.......|++|+++.++.++..++ +.++++++++++++||||+||| |+|
T Consensus 267 D~p~~~p~~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~gis~e~i~~i~~~NParlf~l~~k~ 330 (331)
T d1i0da_ 267 DWLFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLRA 330 (331)
T ss_dssp CCCSEECSSSTTHHHHHHHHCTTGGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHSCCCCC
T ss_pred CCCCcccccccCCCccccccCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCC
Confidence 99644332 22211122477788888998886554 4689999999999999999999 554
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=9.5e-15 Score=128.23 Aligned_cols=250 Identities=10% Similarity=-0.041 Sum_probs=125.0
Q ss_pred cccchhcccCccEEEECCCCCCCCCcHHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHH-HHHHhcCceeEEEEe
Q 020186 5 TILPICSVSHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEI-KLARKTGVVFAVKLY 83 (329)
Q Consensus 5 ~~~~~Aa~GGvTtvidmPnt~p~~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el-~~l~~~G~v~~~K~f 83 (329)
+++..+++||||||+|||++.|...+.+.+..+.+....... .+|................. ..........+.+..
T Consensus 25 ~~~~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T d1onwa2 25 VALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGI--SAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCA 102 (284)
T ss_dssp CCHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTS--EEEEEEECSCSSCCCSSSCHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHhCCeEEEecCCCCCChHhHHHHHHHHHHHHhhcCe--eEEEecccccCCcccccccchhhhhccchhhhhhhh
Confidence 357789999999999999999999998888777776665443 34433222100111111111 111111112222222
Q ss_pred eccccccCCCCccCh--H---HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 020186 84 PAGATTNSQDGVTDL--F---GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 84 ~~~~~~~~~~~~~d~--~---~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv 158 (329)
..... ....+. . ....+........+.++..|...... + +.++. ..++..+.++|..+-
T Consensus 103 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~--~~~~~~~~~~~~~~~ 166 (284)
T d1onwa2 103 ISDHR----SAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK-------A---LQPIY--DLLENCDVPISKLLP 166 (284)
T ss_dssp ESSTT----SCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT-------T---THHHH--HHHHTCCCCGGGEEE
T ss_pred hHHHH----hhccchHHHHhHHHHHHHHhhccccCCceeccccccHH-------H---HHHHH--HHHHhcCCEEEEecc
Confidence 21100 011111 0 11223333444556677777654321 1 22222 344555555443332
Q ss_pred CCHHHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcC
Q 020186 159 TTMDAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERG 238 (329)
Q Consensus 159 St~~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~ 238 (329)
+.. ....++.++++.+..+... ........++......+..+|+....+... +++|||+++...
T Consensus 167 ~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~td~~~~~~~ 230 (284)
T d1onwa2 167 THV------------NRNVPLFEQALEFARKGGT---IDITSSIDEPVAPAEGIARAVQAGIPLARV-TLSSDGNGSQPF 230 (284)
T ss_dssp ECG------------GGSHHHHHHHHHHHHTTCC---EEEETTCCSSSCHHHHHHHHHHTTCCGGGE-EEECCBTCC---
T ss_pred ccc------------ccccccHHHHHHHHhcCCe---ehhhccCCCccCCHHHHHHHHHhCCCCceE-EEEecccccccc
Confidence 210 0011112223322111100 000001112223344566677777777787 999999998877
Q ss_pred cccccC-CcCCccchhHHHHHHHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 239 RKECAC-GCAGIYNAPVALSLYAKVF-EEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 239 eK~~~~-~~~Gi~~~e~~lpll~~~~-~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
.|.... ..+|.++.+.+++.++..+ ..++|++++++++|.||||+|||+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gls~~~al~~aT~npAr~lGL~~ 282 (284)
T d1onwa2 231 FDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTG 282 (284)
T ss_dssp ----------CCCCSHHHHHHHHHHHHHHCCCHHHHHGGGTHHHHHHTTCTT
T ss_pred ccccccccCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 765432 3357778888888887655 4589999999999999999999964
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.01 E-value=7e-11 Score=91.94 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHhhhhhhhcCCC---------CC-cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 271 KLEAFTSFNGPDFYGLP---------RN-TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 271 ~~v~~~s~nPAkifgl~---------~~-dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
++.+.++.+||+++.+. .| +|||+|| +++|+++.++++|+++|||| +|++++|+|.+
T Consensus 33 ~I~~~i~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~~~~Sk~~nspf-~g~~l~G~v~~ 101 (112)
T d1xrta1 33 KIDKNILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPL-WGKVLKGKVIY 101 (112)
T ss_dssp EEESSCCCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTT-TTCEEEEEEEE
T ss_pred EeecCCCcccceEEehhcccccceeecccceEEEEecCCccEEECHHHccCcCCCcee-cCCEEeeEEEE
Confidence 34456788999998432 12 8999999 69999999999999999999 99999999975
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=1.4e-09 Score=87.70 Aligned_cols=51 Identities=8% Similarity=-0.087 Sum_probs=44.2
Q ss_pred hhhhhhhcCC------CC-C-cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 277 SFNGPDFYGL------PR-N-TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 277 s~nPAkifgl------~~-~-dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+.+|+++++. +. | |||++|| +.+|+|+.++++|+++|||| +|++++|+|.+
T Consensus 37 ~~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~~~~sk~~~tpf-~G~~~~G~v~~ 97 (142)
T d1kcxa1 37 VPGGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIF-EGMECHGSPLV 97 (142)
T ss_dssp SCSSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTT-TTCEEEEEEEE
T ss_pred CCccceeechhhcceeecccccceEEEEeccceEEEcchhccccCCccCC-cCCEEEEEEEE
Confidence 4578888765 22 2 8999999 68999999999999999999 99999999975
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.75 E-value=2.6e-09 Score=86.90 Aligned_cols=52 Identities=8% Similarity=-0.032 Sum_probs=45.5
Q ss_pred HhhhhhhhcCCCC-------C-cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 276 TSFNGPDFYGLPR-------N-TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 276 ~s~nPAkifgl~~-------~-dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
.+.+++|++++.. | |||++|+ +.+|+|++++++|+++|||| +|++++|+|.+
T Consensus 37 ~~~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~~~~sk~~~spf-eG~~~~G~v~~ 98 (150)
T d2ftwa1 37 EPKEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIF-EGIKVTGIAVT 98 (150)
T ss_dssp CCCSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTT-TTCEEEEEEEE
T ss_pred CCCCccEEEecccceeeeecCccCceEEEecCceEEEeccccccccccccC-cCCEEEEEEeE
Confidence 4568899887622 2 8999999 68999999999999999999 99999999975
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=98.50 E-value=3.8e-08 Score=77.65 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=36.3
Q ss_pred cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|||++|| +.+|+++.++++|+++|||| +|++++|+|.+
T Consensus 61 DAD~~l~Dp~~~~~v~~~~~~sk~~~tpf-~G~~~~G~v~~ 100 (126)
T d1gkra1 61 DADLLILDLDIDTKVDASQFRSLHKYSPF-DGMPVTGAPVL 100 (126)
T ss_dssp BCCEEEEESCCCEECCGGGCSSSCCCCTT-TTCEECCEEEE
T ss_pred cchhheeccccceeccHHHHHhhhccccc-CCcEEEeEEEE
Confidence 9999999 68999999999999999999 99999999975
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=98.33 E-value=3e-06 Score=78.08 Aligned_cols=253 Identities=14% Similarity=0.107 Sum_probs=139.0
Q ss_pred ccchhcccCccEEEECCCCC---CCC-----------------CcHHHHHHHHHHHHhhCCCCccEEEEEEEE-----e-
Q 020186 6 ILPICSVSHYGRAIVMPNLK---PPI-----------------TTTAAAVAYRESILKALPASSNFTPLMTLY-----L- 59 (329)
Q Consensus 6 ~~~~Aa~GGvTtvidmPnt~---p~~-----------------~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~-----~- 59 (329)
.+...+.-||||++.. |+- .|. -+-+.+..+.+.+++... .+|++.+.+-. +
T Consensus 18 ~~~~~~~~GVTT~v~G-ncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~~~-~~Nva~~vgH~~lR~~vm 95 (358)
T d1m7ja3 18 DMTPKISQGVTTVVTG-NCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPP-AVNAACMVGHSTLRAAVM 95 (358)
T ss_dssp TCHHHHTTTEEEEEES-CTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCC-SSEEEEEEEHHHHHHHHC
T ss_pred CCcccccCCCceEEEe-CCCCCcccCCcccccchHHHhccCCCcCcCCHHHHHHHHHhcCC-ccceeeeccccccccccc
Confidence 3445667899999966 221 010 001123456666655432 37888765421 1
Q ss_pred CC---CCCHHHHHHHH-------hcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCCh
Q 020186 60 TD---TTSPDEIKLAR-------KTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDI 129 (329)
Q Consensus 60 ~~---~~~~~el~~l~-------~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~ 129 (329)
+. ....+||.+|. ++|++ ||=.=..|. .+. ..+. +.+.++.+.+++.|.++..|.-+...
T Consensus 96 g~~~~~at~~ei~~M~~ll~eal~~GA~-G~Stgl~y~--P~~--~A~~-~El~~lak~~~~~g~~~~~h~r~~~~---- 165 (358)
T d1m7ja3 96 PDLRREATADEIQAMQALADDALASGAI-GISTGAFYP--PAA--HAST-EEIIEVCRPLITHGGVYATHMRDEGE---- 165 (358)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHHHHHTCC-EEEEETTSG--GGT--TCCH-HHHHHHHTHHHHHTCEEEEECSCSST----
T ss_pred CcccccCCHHHHHHHHHHHHHHHhcCCc-ccccCCccc--ccc--cCCH-HHHHHHHHHHHhcCCeeeeeeccccc----
Confidence 11 11344554443 46864 653222111 111 1244 78899999999999999999876531
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCeEEEEecCC---------HHHHHHHHcccC-CceEEEecchhhhcc---hhhhcCCCC
Q 020186 130 FDREKVFIDTILQPLIQRLPQLKVVMEHITT---------MDAVKFVESCKE-GFVAATVTPQHLVLN---RNALFQGGL 196 (329)
Q Consensus 130 ~~~E~~av~~~~~~~la~~~~~~lhi~HvSt---------~~sl~~i~~ak~-~~vt~Et~phhL~l~---~~~~~~~~~ 196 (329)
...+++..++ .+++.+|+|+||+|+.+ .+.+++++++++ .+|++|+-|.--..+ .+.... ..
T Consensus 166 --~~~~~~~e~~--~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~-~~ 240 (358)
T d1m7ja3 166 --HIVQALEETF--RIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLL-AG 240 (358)
T ss_dssp --THHHHHHHHH--HHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTT-SS
T ss_pred --cHHHHHHHHH--HHHHHcCCceEecccccCCCcchhhHHHHHHHHHHHhcCCCcceeecCccccccccchhhhhh-cc
Confidence 1234555666 78899999999999853 445667777766 899999988543211 111100 00
Q ss_pred CCc---eEEcCCCCChh-----------------------------hHHHHHHHHHcCCCCeEEecCCCCCCcCcccccC
Q 020186 197 RPH---NYCLPVLKREI-----------------------------HRQAVVSAVTSGSRKFFLGTDSAPHERGRKECAC 244 (329)
Q Consensus 197 ~~~---~k~~PPLR~~~-----------------------------dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~ 244 (329)
... .+-+|++..+. +.+.+.+.|+.-. - +|+||--+|.. .
T Consensus 241 ~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~-~-~igSDgga~~~------~ 312 (358)
T d1m7ja3 241 RTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGP-T-MIGSDGLPHDE------R 312 (358)
T ss_dssp CEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTT-E-EECCCCCTTCS------S
T ss_pred chhhhccccChhhccCcHHHHHHHcCCCHHHHHHHHhhccchhhcCCHHHHHHHHhCCC-c-eEEcCcccCCC------C
Confidence 000 11123332210 1223444454433 2 67777555421 1
Q ss_pred CcC-CccchhHHHHHHHH-HHH--hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 245 GCA-GIYNAPVALSLYAK-VFE--EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 245 ~~~-Gi~~~e~~lpll~~-~~~--~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
..| +.. .+|-++. +++ +.+|||+.|+.|+..||++|||+
T Consensus 313 ~hpr~~g----tf~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~ 355 (358)
T d1m7ja3 313 PHPRLWG----TFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLA 355 (358)
T ss_dssp CCTHHHH----HHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCT
T ss_pred cCCCCcc----cHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHhCCC
Confidence 111 222 2443342 333 35799999999999999999994
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=98.21 E-value=4.9e-07 Score=71.15 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=36.1
Q ss_pred cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+||++++ +.+|+|++++++|+++|||| +|++++|+|++
T Consensus 57 ~~~~~i~dP~~~~tIt~~~~~s~~~~tpy-eG~~~~G~~~~ 96 (127)
T d1nfga1 57 DADIVLWDPEAEMVIEQTAMHNAMDYSSY-EGHKVKGVPKT 96 (127)
T ss_dssp BCCEEEEEEEEEEECCGGGSCSSCSCCTT-TTCEEEEEEEE
T ss_pred cccceeeccccceEEehHHhccccCcCCC-cCCEEeeEEEE
Confidence 7999999 68999999999999999999 99999999985
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=98.17 E-value=4.1e-07 Score=71.19 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=35.1
Q ss_pred ccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 291 SKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 291 ADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
||+|+| +.+|+++.+++||+++|||| ||++++|+|.+
T Consensus 54 ~d~~~~d~~~~~tis~~~~~s~~~~tpf-eG~~~~G~v~~ 92 (123)
T d1gkpa1 54 ADLVVYDPQYRGTISVKTQHVNNDYNGF-EGFEIDGRPSV 92 (123)
T ss_dssp CCEEEEETTCCEECCGGGCCSSSSCCTT-TTCEESCEEEE
T ss_pred cceEEEecccccccchhhhhcccccccc-cccEEeeEEEE
Confidence 799999 69999999999999999999 99999999975
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.15 E-value=2.1e-06 Score=71.41 Aligned_cols=81 Identities=6% Similarity=-0.099 Sum_probs=46.2
Q ss_pred CCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHH
Q 020186 197 RPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFT 276 (329)
Q Consensus 197 ~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~ 276 (329)
+....+.++.+ ....+.+......+.+. ...++..+.+. .+..+..++.. .|...++..+|+.++++.+
T Consensus 185 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~l~~---~l~~~~~~Gls~~eal~~a 253 (267)
T d2icsa2 185 GVVFDIGHGTD-SFNFHVAETALREGMKA-ASISTDIYIRN------RENGPVYDLAT---TMEKLRVVGYDWPEIIEKV 253 (267)
T ss_dssp TCEEECCCTTT-SCCHHHHHHHHHTTCCC-SBCCCCBCHHH------HHSSSCCCHHH---HHHHHHHHTCCHHHHHHTT
T ss_pred CCeeeccCcch-hhhHHHHHHhhhhcccc-eeccceeecCC------CCcchHHHHHH---HHHHHHHcCCCHHHHHHHH
Confidence 33444444443 34555666666666666 45554433210 01112333211 2222334478999999999
Q ss_pred hhhhhhhcCCCC
Q 020186 277 SFNGPDFYGLPR 288 (329)
Q Consensus 277 s~nPAkifgl~~ 288 (329)
+.||||+|||+.
T Consensus 254 T~npA~~lgl~d 265 (267)
T d2icsa2 254 TKAPAENFHLTQ 265 (267)
T ss_dssp THHHHHHTTCTT
T ss_pred HHHHHHHhCCCC
Confidence 999999999953
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.15 E-value=9.3e-07 Score=69.64 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=36.0
Q ss_pred cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
|||++++ +.+|+|++++++|+++|||| +|++++|+|.+
T Consensus 58 ~~~~~~~dp~~~~~i~~~~~~s~~~~tpf-~G~~~~g~v~~ 97 (128)
T d1k1da1 58 DADLVIFDPNIERVISAETHHMAVDYNAF-EGMKVTGEPVS 97 (128)
T ss_dssp BCCEEEEEEEEEEECCTTTCCSSSSCCTT-TTCEEEEEEEE
T ss_pred ccceEEeeccccEEEeccccccccceeee-cCcEEEEEEEE
Confidence 8999999 69999999999999999999 99999999975
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=98.04 E-value=2e-06 Score=67.56 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=36.1
Q ss_pred cccEEEE--ecceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 290 TSKIKLT--KIPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 290 dADlvi~--~~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+|||+++ +.+|++++++++|+++|||| +|++++|+|.+
T Consensus 57 ~~~~~i~dp~~~~tI~~~~~~s~~~~tpf-eG~~~~G~v~~ 96 (127)
T d1ynya1 57 DADIVIFDPHVKRTLSVETHHMNVDYNPF-EGMEVYGEVVS 96 (127)
T ss_dssp BCCEEEEEEEEEEEECTTTCCSSSSCCTT-TTEEEEEEEEE
T ss_pred cchhhhhccccceEEeehhhhhccCcCCc-CCCEEeeEEEE
Confidence 7999999 68999999999999999999 99999999875
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.94 E-value=6.5e-07 Score=77.35 Aligned_cols=58 Identities=17% Similarity=0.093 Sum_probs=38.2
Q ss_pred CCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 222 GSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 222 G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+..+ ++.+|+.+.... ...+|.+ .++++.+...++ ..+|++++++++|.||||+|||+
T Consensus 227 ~~~~-~~~~~~~~~~~~-----g~~~g~~--~~l~~~~~~~v~~~Gls~~eal~~aT~n~A~~lgl~ 285 (288)
T d1o12a2 227 GDLV-VKVKDGVPRLED-----GTLAGST--LFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLD 285 (288)
T ss_dssp SSSE-EEEETTEEECTT-----SCBCCBC--CCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCT
T ss_pred Ccee-EEeeCCEEEccC-----CCcccch--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 5666 777776543211 1123432 234555555555 48999999999999999999995
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.00071 Score=59.29 Aligned_cols=152 Identities=11% Similarity=0.055 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
..+...++.++++|.||++|+.+... ...+...+ .-......++.+.|..-..+++..+++-+...+..
T Consensus 138 ~~f~~~~~~A~~~~lPv~iH~r~~~~--------~~e~~~~l--~~~~~~~~~~~~~H~~f~~~~e~~~~~~~~G~~i~- 206 (291)
T d1bf6a_ 138 KVFIAAALAHNQTGRPISTHTSFSTM--------GLEQLALL--QAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQ- 206 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCS--------HHHHHHHH--HHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEE-
T ss_pred HHHHHHHHHHHHhCCCeEEeccchhh--------hHHHHHHH--HHhCCCcccceecccCCCCCHHHHHHHHhcCeeEE-
Confidence 45777788899999999999986431 11122222 11222334577889832234444443321122222
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCC-eEEecCCCCCCcCcccccCCcCCccchhHHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRK-FFLGTDSAPHERGRKECACGCAGIYNAPVALSL 258 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id-~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpl 258 (329)
|+. .+++ + .+| .....+.+.+.++.+-.| ++++|| +|+..-.+. .|.+|.+. .++.
T Consensus 207 ------~~g-------~~~~-~-~~~--~~~~~~~~~~lv~~~p~drilleTD-~p~~~p~~~--~g~~~~~~---~~~~ 263 (291)
T d1bf6a_ 207 ------FDT-------IGKN-S-YYP--DEKRIAMLHALRDRGLLNRVMLSMD-ITRRSHLKA--NGGYGYDY---LLTT 263 (291)
T ss_dssp ------ECC-------TTCT-T-TSC--HHHHHHHHHHHHHTTCGGGEEECCC-CCSGGGSGG--GTSCCTTH---HHHT
T ss_pred ------ecc-------cccc-c-CCc--HHHhHHHHHHHHHhCCchhEEEecC-CCCcccccc--CCCCCchh---HHHH
Confidence 210 0111 1 122 122334566666665543 477888 576432221 13334443 3443
Q ss_pred HHHHHH-hcCCHHHHHHHHhhhhhhhcC
Q 020186 259 YAKVFE-EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 259 l~~~~~-~~~~l~~~v~~~s~nPAkifg 285 (329)
+...+. ..++.+++.+++..||+|+|.
T Consensus 264 ~~~~l~~~g~s~e~i~~i~~~Np~rlf~ 291 (291)
T d1bf6a_ 264 FIPQLRQSGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 333233 467999999999999999984
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.018 Score=49.62 Aligned_cols=144 Identities=16% Similarity=0.092 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
..+.+-++.+++++.|+++|+-+.. .+ +..++ ........+. |.|.=+ ++.+.++++-
T Consensus 111 ~~f~~ql~lA~~~~lPv~iH~r~a~-------~~---~~~il--~~~~~~~~~~-v~H~Fs-G~~~~a~~~l-------- 168 (265)
T d1yixa1 111 ESFIHHIQIGRELNKPVIVHTRDAR-------AD---TLAIL--REEKVTDCGG-VLHCFT-EDRETAGKLL-------- 168 (265)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH-------HH---HHHHH--HHTTGGGTCE-EETTCC-SCHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCCCcccchhhHH-------HH---HHHHH--HhhcccCcce-EEEeec-CChHHHHHHH--------
Confidence 3456677888889999999988652 11 22222 1122234454 556532 1222223221
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhH--HHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHR--QAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr--~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
+ .|.++-+++.+.....+ ..+.+.+=.+.| ++-|| +|+....+ ..|-.+-...++
T Consensus 169 ------------~---~g~~~s~~g~~~~~~~~~l~~~v~~iPldrl--LlETD-~P~~~p~~-----~~~~~n~P~~i~ 225 (265)
T d1yixa1 169 ------------D---LGFYISFSGIVTFRNAEQLRDAARYVPLDRL--LVETD-SPYLAPVP-----HRGKENQPAMVR 225 (265)
T ss_dssp ------------T---TTCEEEECGGGGSTTCHHHHHHHHHSCGGGE--EECCC-BTSCCCTT-----CTTSCCCGGGHH
T ss_pred ------------H---cCCeecCccccccchhHHHHHHHHhcchhce--EeecC-CcccCccc-----cCCCCCCcHHHH
Confidence 0 13344444433332222 234455544554 78899 57754322 113333334566
Q ss_pred HHHHHHH--hcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 258 LYAKVFE--EMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 258 ll~~~~~--~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
.....+. +.++.+.+.+.+..|.-++|||+.
T Consensus 226 ~~~~~iA~i~~~~~~ev~~~~~~Na~~lf~l~~ 258 (265)
T d1yixa1 226 DVAEYMAVLKGVAVEELAQVTTDNFARLFHIDA 258 (265)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHhCCCH
Confidence 6555442 477999999999999999999964
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.83 E-value=0.00089 Score=59.17 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHHHh-cCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC-------h-----hH
Q 020186 65 PDEIKLARK-TGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD-------I-----FD 131 (329)
Q Consensus 65 ~~el~~l~~-~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~-------~-----~~ 131 (329)
.+|+....+ .|+ .|+|++... .+..++| ..++.+++.+.++|++|.+|......... . ..
T Consensus 105 ~~el~r~~~~~G~-~Gi~~~~~~----~~~~~~d--p~~~pi~~~~~e~~lpv~~H~~~~~~~~~~~~~~~~~~~~~~~~ 177 (306)
T d2f6ka1 105 VKTVQQALDQDGA-LGVTVPTNS----RGLYFGS--PVLERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLGFFM 177 (306)
T ss_dssp HHHHHHHHHTSCC-SEEEEESEE----TTEETTC--GGGHHHHHHHHTTTCEEEEECCCCSCCCTTSSTTCCHHHHHHHH
T ss_pred HHHHHHHHhcccc-eEEEecCcc----ccccCCC--ccchHHHHHHHHcCCceEeccCCCCCCcccccccCccchhhhhH
Confidence 346777655 585 599987532 2334555 67899999999999999999765532211 0 11
Q ss_pred HHHHHHHHHH-HHHHHhcCCCeEEEEecC
Q 020186 132 REKVFIDTIL-QPLIQRLPQLKVVMEHIT 159 (329)
Q Consensus 132 ~E~~av~~~~-~~~la~~~~~~lhi~HvS 159 (329)
.+..++.+.+ ...+.++++.++.+.|..
T Consensus 178 ~~~~~~~~l~~~~v~~rfP~l~~v~~H~G 206 (306)
T d2f6ka1 178 DTTMTFINMLKYHFFEKYPNIKVIIPHAG 206 (306)
T ss_dssp HHHHHHHHHHHTTHHHHCTTCEEEESGGG
T ss_pred HHHHHHHHHHHhhhhhhccCceEEEeecc
Confidence 2233333322 112568999999999986
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0055 Score=52.19 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC------CHHHHHHHHcccCC
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT------TMDAVKFVESCKEG 173 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS------t~~sl~~i~~ak~~ 173 (329)
+.+..+++.+++.|.++.+|+........ ......... ........+..+.|.. .....+.++..++.
T Consensus 140 ~~~~~~~~~A~~~g~~~~~h~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (320)
T d1ra0a2 140 ESLHKTFALAQKYDRLIDVHCDEIDDEQS---RFVETVAAL---AHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMS 213 (320)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCSSCTTC---CHHHHHHHH---HHHHTCGGGEEEEECGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeeeecccchhHH---HhhhhHHHH---HHHhhcccccccccceeccccchhhhHHHHHHhhhc
Confidence 56778888899999999999864432111 111111111 1222233333444442 22222222222224
Q ss_pred ceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchh
Q 020186 174 FVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAP 253 (329)
Q Consensus 174 ~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e 253 (329)
.++.-.||-.-.. + +......|..+......++ +..|.-- .++||+..... ...|....-
T Consensus 214 g~~~~~~p~~~~~----~-----~~~~~~~~~~~~~~~~~~~---~~~G~~v-~~gtd~~~~~~-------~~~~~~~~~ 273 (320)
T d1ra0a2 214 GINFVANPLVNIH----L-----QGRFDTYPKRRGITRVKEM---LESGINV-CFGHDGVFDPW-------YPLGTANML 273 (320)
T ss_dssp TCEEEECHHHHHH----H-----TTTTCCSSCCCCCCCHHHH---HHTTCCE-EECCBCSSBTT-------BSCCCCCHH
T ss_pred CcEEEeccchhhh----h-----cccccccccccccCchhhH---hhcCceE-eecCCcCCCCC-------CCCCChhHH
Confidence 5677777743211 1 1122333444444333344 3447665 89999854321 112333321
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCCCC
Q 020186 254 VALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLPRN 289 (329)
Q Consensus 254 ~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~~~ 289 (329)
..+...+.... +.+|+.++++..+.||||.+|+..|
T Consensus 274 ~~~~~~~~~~~~~~~~s~~eal~~aT~ngA~aLgl~~G 311 (320)
T d1ra0a2 274 QVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQDY 311 (320)
T ss_dssp HHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSSC
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 12222222211 2468899999999999999999544
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=96.56 E-value=0.0087 Score=52.81 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCceeEEEEeecccccc--CCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC------Ch-------
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTN--SQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV------DI------- 129 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~--~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~------~~------- 129 (329)
.+|+....+.....++|+...+.... ....+.| ..+..+++.+.++|++|.+|+.+..... ..
T Consensus 110 ~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d--~~~~pi~~~~~e~~lpv~iH~~~~~~~~~~~~~~~~~~~~~~~ 187 (325)
T d2dvta1 110 TEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDL--PQYRPFWGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTW 187 (325)
T ss_dssp HHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTS--GGGHHHHHHHHHHTCCEEEECCCCCGGGCGGGTTCGGGSGGGT
T ss_pred hhhhhhhhhcccceEEEEeCCCcCCCCCCcccccC--cccchHHHHHhhCCceEEEecCCCCCccccccccccccccccc
Confidence 45677766553356999875421110 1112344 6788999999999999999987643210 00
Q ss_pred -hHHH-HHHHHHH-HHHHHHhcCCCeEEEEecCCHHHHHH--HHcccCCceEEEecchhhh-cchhhhcCCCCCCceEEc
Q 020186 130 -FDRE-KVFIDTI-LQPLIQRLPQLKVVMEHITTMDAVKF--VESCKEGFVAATVTPQHLV-LNRNALFQGGLRPHNYCL 203 (329)
Q Consensus 130 -~~~E-~~av~~~-~~~~la~~~~~~lhi~HvSt~~sl~~--i~~ak~~~vt~Et~phhL~-l~~~~~~~~~~~~~~k~~ 203 (329)
+..+ ..++... +...+.+++++++.+.|....-...+ +..... ...+.+.+-. ....++. .....+.
T Consensus 188 ~~~~~~~~~~~~l~~~gv~~r~P~Lk~v~~H~gg~~~~~~~r~d~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 260 (325)
T d2dvta1 188 AFAQETAVHALRLMASGLFDEHPRLNIILGHMGEGLPYMMWRIDHRNA---WVKLPPRYPAKRRFMDYF----NENFHIT 260 (325)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHCTTCCEEESGGGTTHHHHHHHHHHTTT---TCCSCCSSSCSSCHHHHH----HHHEEEE
T ss_pred ccchhhHHHhHHHHhcchhhhccccceeeeccccccchHHHHHHHhhh---hhccccccccccchHHHh----hcccccc
Confidence 1111 1222221 11135578999999999864322222 222111 0011111110 0011111 0112222
Q ss_pred -CCCCChhhHHHHHHHHH---cCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHh-cCCHHHHHHHHhh
Q 020186 204 -PVLKREIHRQAVVSAVT---SGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEE-MGALDKLEAFTSF 278 (329)
Q Consensus 204 -PPLR~~~dr~aLw~al~---~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~-~~~l~~~v~~~s~ 278 (329)
.+..+. +.|..++. .+.| +.|||. ||...++ .. +.+.. .++-++.-+++..
T Consensus 261 ~~~~~~~---~~l~~~~~~~G~dri--lfGSD~-P~~~~~~--------------~~----~~~~~~~l~~~~~~~Il~~ 316 (325)
T d2dvta1 261 TSGNFRT---QTLIDAILEIGADRI--LFSTDW-PFENIDH--------------AS----DWFNATSIAEADRVKIGRT 316 (325)
T ss_dssp CTTCCCH---HHHHHHHTTTCGGGE--ECCCCT-TTSCHHH--------------HH----HHHHHSSSCHHHHHHHHTH
T ss_pred ccCCcCH---HHHHHHHHHhCCCeE--EEeCCC-CCCChHh--------------HH----HHHHcCCCCHHHHHHHHhH
Confidence 222222 33444432 3444 779996 7632111 11 22222 5688899999999
Q ss_pred hhhhhcCCC
Q 020186 279 NGPDFYGLP 287 (329)
Q Consensus 279 nPAkifgl~ 287 (329)
|++|+|||+
T Consensus 317 NA~rl~~Ld 325 (325)
T d2dvta1 317 NARRLFKLD 325 (325)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHCcC
Confidence 999999984
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.20 E-value=0.24 Score=41.91 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~ 177 (329)
+.+.++++.+++.|.++.+|.-....... .+... .-....+-++.+.|.. +.+.++++++ ..+..
T Consensus 132 ~~~~~~~~~A~~~~~~i~iH~~e~~~e~~-------~~~~l---~~~g~l~~~~~~~H~~~~~~~di~~la~---~~~~v 198 (281)
T d1p1ma2 132 EYLKRVFDTAKSLNAPVTIHLYETSKEEY-------DLEDI---LNIGLKEVKTIAAHCVHLPERYFGVLKD---IPFFV 198 (281)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCSTTCCC-------CTHHH---HTTTTTTSCEEEEECTTCCGGGTTTTTT---SSEEE
T ss_pred hhhHHHHHHHhccCccccccccCCcccch-------hHHHH---HHcCCCCccccccceeeecHHHHHHHHh---cCCcc
Confidence 78899999999999999999632211000 01111 1112346677777776 4555666654 46888
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccch--hHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA--PVA 255 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~--e~~ 255 (329)
-.||-.=+ .. +.+ . || +.+.+..|.-= .||||..+-.. -..+ |..
T Consensus 199 v~cP~sn~-----~l--g~~-~----~~---------~~~~~~~Gv~v-~LGTD~~~s~~-----------~~d~~~em~ 245 (281)
T d1p1ma2 199 SHNPASNL-----KL--GNG-I----AP---------VQRMIEHGMKV-TLGTDGAASNN-----------SLNLFFEMR 245 (281)
T ss_dssp EECHHHHH-----HT--TCC-C----CC---------HHHHHHTTCEE-EECCCCTTTTS-----------CCCHHHHHH
T ss_pred ccccchhh-----hh--ccc-c----hh---------HHHHHhCCCeE-EEECCCCCCCC-----------CcCHHHHHH
Confidence 89995311 11 111 1 32 34445567653 89999654321 0111 222
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCCCC
Q 020186 256 LSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLPRN 289 (329)
Q Consensus 256 lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~~~ 289 (329)
+..++.... ..++.++++++.+.|+||.+||+.|
T Consensus 246 ~a~~~~~~~~~~~~~~~~~l~~aT~~gA~aLGl~~g 281 (281)
T d1p1ma2 246 LASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSG 281 (281)
T ss_dssp HHHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCSCS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 222222111 2478899999999999999999654
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=95.87 E-value=0.035 Score=48.53 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCceeEEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCC---C--h-----hHHH-
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIV---D--I-----FDRE- 133 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~---~--~-----~~~E- 133 (329)
.+|+..+.+.|. .++|++... .+....| ..++.+++.+.++|++|++|+.+..... . . ...+
T Consensus 128 ~~el~r~~~~g~-~g~~l~~~~----~~~~~~d--~~~~p~~~~~~e~~~pv~iH~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (331)
T d2hbva1 128 CKEASRAVAAGH-LGIQIGNHL----GDKDLDD--ATLEAFLTHCANEDIPILVHPWDMMGGQRMKKWMLPWLVAMPAET 200 (331)
T ss_dssp HHHHHHHHHHTC-CCEEEESCB----TTBCTTS--HHHHHHHHHHHHTTCCEEEECCSCSCTTTTCSTTHHHHTHHHHHH
T ss_pred hhHHHHhhhhcc-eeeeecccc----cCccccc--chhhHHHHHHhccCCceEEecCCCCCcccccccccccccccchhh
Confidence 457888888885 599987532 2334455 8899999999999999999987542211 0 0 1112
Q ss_pred HHHHHHHH-HHHHHhcCC-CeEEEEecCC--HHHHHHHHcc-cCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCC
Q 020186 134 KVFIDTIL-QPLIQRLPQ-LKVVMEHITT--MDAVKFVESC-KEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKR 208 (329)
Q Consensus 134 ~~av~~~~-~~~la~~~~-~~lhi~HvSt--~~sl~~i~~a-k~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~ 208 (329)
..+....+ ...+.++.+ ..+.+.|-.. +.-+..+... .......+-+.+. ...+. ...+ ......+
T Consensus 201 ~~~~~~l~~~gv~~r~P~~~~v~~~hg~g~~~~~~~r~~~~~~~~~~~~~~~~~~----~~~~~----~~~~-~~~~~~~ 271 (331)
T d2hbva1 201 QLAILSLILSGAFERIPKSLKICFGHGGGSFAFLLGRVDNAWRHRDIVREDCPRP----PSEYV----DRFF-VDSAVFN 271 (331)
T ss_dssp HHHHHHHHHTTGGGTSCTTCCEEESGGGTTHHHHHHHHHHHHHHCHHHHTTCCSC----GGGGG----GGCE-EECCCSS
T ss_pred hhHhhhhhccchHhhCCCccEEEEecCccccHHHHHHHHhhhhccccchhhcccC----hhhhh----cccc-cccccCC
Confidence 12222211 112345665 4454444322 1111111110 0000000001110 01110 1122 2222334
Q ss_pred hhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 209 EIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 209 ~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+...+.+++.+-...| +.|||- ||...+... . ..+. ..++-+..-+++..|++|+|||+
T Consensus 272 ~~~l~~~~~~~G~dri--lfGSD~-P~~~~~~~~-------~----------~~~~~~~l~~~~~~~I~~~NA~rl~~Ld 331 (331)
T d2hbva1 272 PGALELLVSVMGEDRV--MLGSDY-PFPLGEQKI-------G----------GLVLSSNLGESAKDKIISGNASKFFNIN 331 (331)
T ss_dssp HHHHHHHHHHHCGGGE--ECCCCB-TSTTSCSST-------T----------HHHHTSSCCHHHHHHHHTHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCeE--EEeCCC-CCCCcchhH-------H----------HHHHhCCCCHHHHHHHHhHHHHHHhCcC
Confidence 5556667777745565 789995 774332210 0 1111 25788999999999999999984
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=95.74 E-value=0.016 Score=51.58 Aligned_cols=136 Identities=14% Similarity=0.093 Sum_probs=88.1
Q ss_pred cchhcccCccEEEECCCCCCC------CCc--HHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCcee
Q 020186 7 LPICSVSHYGRAIVMPNLKPP------ITT--TAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~------~~~--~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~ 78 (329)
+..|+++|+||++-.- |-|. ..+ +-.+....+.++ .-+ +|++|.+- ++......|.+..++|+ +
T Consensus 15 ~~~al~sGiTT~~GgG-tGpa~gt~att~tpG~~~i~~ml~a~d-~~P--~N~g~~gk---Gn~s~~~~l~eqi~aGa-~ 86 (390)
T d4ubpc2 15 VDVALANGITTLFGGG-TGPAEGSKATTVTPGPWNIEKMLKSTE-GLP--INVGILGK---GHGSSIAPIMEQIDAGA-A 86 (390)
T ss_dssp HHHHHHTTEEEEEEEC-CSSCHHHHHSSCCCHHHHHHHHHHHHT-TCS--SEEEEEEE---CCCSSHHHHHHHHHHTC-C
T ss_pred HHHHHhcCCeeeecCc-cCCCCCCCCcccCCCHHHHHHHHHhhh-hCC--cceeeeec---cccCChHHHHHHHHhhh-h
Confidence 3478999999999883 3332 112 334544444443 334 89998763 54556778999999996 6
Q ss_pred EEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 020186 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 79 ~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv 158 (329)
++|+.-.+ +-.- ..+...|..+.+.|+-|.+|...-.. .-.+.. .++..-|..+|..|+
T Consensus 87 GlKiHEDw-------Gatp--a~id~~L~vad~~dvqv~iHtDtlNE--------~gfve~----T~~a~~gRtiH~~Ht 145 (390)
T d4ubpc2 87 GLKIHEDW-------GATP--ASIDRSLTVADEADVQVAIHSDTLNE--------AGFLED----TLRAINGRVIHSFHV 145 (390)
T ss_dssp EEEEEGGG-------CCCH--HHHHHHHHHHHHHTCEEEEECCTTCS--------SCCHHH----HHHHHTTCCEEETTT
T ss_pred eeeccccc-------ccCH--HHHHHHHHHhhccCceEEEecCCccc--------ceehhh----HHHHhCCceeecccC
Confidence 99998533 2222 67889999999999999999874321 112332 234455788999998
Q ss_pred CC---HHHHHHHHccc
Q 020186 159 TT---MDAVKFVESCK 171 (329)
Q Consensus 159 St---~~sl~~i~~ak 171 (329)
-- .-+=++|+-+.
T Consensus 146 EGaGGGHaPDii~~~g 161 (390)
T d4ubpc2 146 EGAGGGHAPDIMAMAG 161 (390)
T ss_dssp TSTTSSSTTTGGGGGG
T ss_pred CCCCCCCCchhHHhcC
Confidence 63 22345555553
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=95.59 E-value=0.002 Score=51.43 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCCC-CcccEE
Q 020186 216 VSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLPR-NTSKIK 294 (329)
Q Consensus 216 w~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~~-~dADlv 294 (329)
+-++.+|.|. .|++|+.+++.++.. . ..|--- .|+ +|. -|||+.
T Consensus 22 di~i~~g~I~-~ig~~~~~~~~~~vi-D--a~G~~V----~p~---------------------------~pg~~d~Hih 66 (156)
T d2fvka1 22 EIAVNNGKVQ-LIAASIDPSLGSEVI-D--AEGAFI----TPI---------------------------LPGVSDADLV 66 (156)
T ss_dssp EEEEETTEEE-EEESCCCGGGEEEEE-E--CTTCEE----EEC---------------------------CTTTSBCCEE
T ss_pred EEEEECCEEE-EecCCCCCCCCCEEE-E--CCCCEE----eee---------------------------cccccccceE
Confidence 3468899999 999999887543321 1 012110 000 122 178888
Q ss_pred EEe----------cceeecCCccCcCCcccccCCCcEEEEEEee
Q 020186 295 LTK----------IPWKVPEAFSFSFGDIIPMFAGNTLEWQPSL 328 (329)
Q Consensus 295 i~~----------~~~~v~~~~~~s~~~~spf~~G~~l~G~v~~ 328 (329)
+++ .+++|+.+.++++++|+|| +|++++|+|.+
T Consensus 67 ~~~~~~~~~~~~~~~~tIs~~~~~~~~~~t~~-eg~~~~G~~~~ 109 (156)
T d2fvka1 67 IWYPDDSKKEYNSKPKLITNKLMEHNCDYTPF-EGIEIKNWPRY 109 (156)
T ss_dssp EECCSSCCCCCTTSCSBCCTGGGCSSSSCCTT-TTCBCSCCEEE
T ss_pred EEeeccccccccccceEEehhhcccccccccc-eeEEEccceEE
Confidence 772 4688999999999999999 99999999874
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.085 Score=44.90 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEec--CCHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHI--TTMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv--St~~sl~~i~~ak~~~vt~ 177 (329)
..+.+-++.++++|.|+++|+-+.. .. +..++ ..+...+..|.|- ++.+.++.+.+ .
T Consensus 114 ~~f~~ql~lA~~~~~Pv~IH~r~a~---------~~-~~~~l----~~~~~~~~~i~H~f~g~~~~~~~~l~---~---- 172 (259)
T d1zzma1 114 WLLDEQLKLAKRYDLPVILHSRRTH---------DK-LAMHL----KRHDLPRTGVVHGFSGSLQQAERFVQ---L---- 172 (259)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCH---------HH-HHHHH----HHHCCTTCEEETTCCSCHHHHHHHHH---T----
T ss_pred HHHHHHHHHHHHhccchhhhhHHHH---------HH-HHHhh----hccccccceeeecccCCHHHHHHHHH---c----
Confidence 4556677888889999999986541 11 11122 2221122235564 44444443322 1
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCC--ChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLK--REIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVA 255 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR--~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~ 255 (329)
|.++-+++.+- ...+-..+.+.+=.+.| .+-|| +|+....+. -|-.+....
T Consensus 173 -------------------g~~~si~~~~~~~~~~~~~~~v~~iPldri--L~ETD-~P~~~~~~~-----~~~~~~P~~ 225 (259)
T d1zzma1 173 -------------------GYKIGVGGTITYPRASKTRDVIAKLPLASL--LLETD-APDMPLNGF-----QGQPNRPEQ 225 (259)
T ss_dssp -------------------TCEEEECGGGGCTTTCSHHHHHHHSCGGGE--EECCC-BTSSCCTTC-----TTSCCCGGG
T ss_pred -------------------CCCccccccccccchHHHHHHHHhhccceE--EEecC-CCCcCCCcC-----CCCCCchHH
Confidence 23344444221 11222245566655665 78899 576432211 122222235
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 256 LSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 256 lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
++.+...+. +.++.+++.+.+..|-.|+||||
T Consensus 226 ~~~~~~~iA~i~~~~~~ev~~~~~~N~~rlf~lp 259 (259)
T d1zzma1 226 AARVFAVLCELRREPADEIAQALLNNTYTLFNVP 259 (259)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 555555432 46799999999999999999997
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=95.25 E-value=0.031 Score=49.64 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=93.1
Q ss_pred cchhcccCccEEEECCCCCCC------CCc--HHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCcee
Q 020186 7 LPICSVSHYGRAIVMPNLKPP------ITT--TAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~------~~~--~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~ 78 (329)
+..|+++|+||++-.- |-|. ..+ +-.+....+.++ .-+ +|++|.+- ++....+.|.+..++|+ +
T Consensus 14 ~~~al~sGiTT~iGgG-tGPa~Gt~att~tpg~~~~~~ml~a~d-~~P--~N~g~~gk---Gn~s~~~~l~eqi~AGa-~ 85 (385)
T d1ejxc2 14 AEEALVSGVTTMVGGG-TGPAAGTHATTCTPGPWYISRMLQAAD-SLP--VNIGLLGK---GNVSQPDALREQVAAGV-I 85 (385)
T ss_dssp HHHHHHTTEEEEEEEC-CSSSHHHHHSSCCCHHHHHHHHHHHHT-TSS--SEEEEEEE---CCCSSHHHHHHHHHHTC-S
T ss_pred HHHHHhcCCeeeecCc-cCCCCCCCCcCcCCCHHHHHHHHHhhh-hCC--cceeeeec---cccCChHHHHHHHHhhh-c
Confidence 4578999999999983 3332 122 334555445443 334 89998763 54456778999999996 6
Q ss_pred EEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 020186 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 79 ~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv 158 (329)
++|+.--. +-.- ..+..+|+.+.+.|.-|.+|...-.. .-.+.. .++..-|..+|..|+
T Consensus 86 GlKiHEDw-------Gatp--a~id~~L~vad~~dvqv~iHtDtlNE--------~gfved----T~~a~~gRtiH~~H~ 144 (385)
T d1ejxc2 86 GLKIHEDW-------GATP--AAIDCALTVADEMDIQVALHSDTLNE--------SGFVED----TLAAIGGRTIHTFHT 144 (385)
T ss_dssp EEEEEGGG-------CCCH--HHHHHHHHHHHHHTCEEEEECCTTCS--------SCCHHH----HHHHHTTCCEEESST
T ss_pred eecCCccc-------ccCh--HHHHHHHHhHhhcCceEEEecccccc--------cccchh----hHHHhCCCceeeeec
Confidence 99998533 2222 67888999999999999999874221 112322 234445888999998
Q ss_pred CCHH---HHHHHHcccCCc-eEEEecc
Q 020186 159 TTMD---AVKFVESCKEGF-VAATVTP 181 (329)
Q Consensus 159 St~~---sl~~i~~ak~~~-vt~Et~p 181 (329)
--+. +=++|+-+...+ +-..|.|
T Consensus 145 EGaGGGHAPDii~~~~~~nvlpsSTnP 171 (385)
T d1ejxc2 145 EGAGGGHAPDIITACAHPNILPSSTNP 171 (385)
T ss_dssp TSTTSSSTTTGGGGGGCTTEEEEEEST
T ss_pred ccCCCCccchhhHhhccCcccCCCCCC
Confidence 6432 456666665422 3444444
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=94.99 E-value=0.066 Score=47.50 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=93.9
Q ss_pred cchhcccCccEEEECCCCCCC------CCc--HHHHHHHHHHHHhhCCCCccEEEEEEEEeCCCCCHHHHHHHHhcCcee
Q 020186 7 LPICSVSHYGRAIVMPNLKPP------ITT--TAAAVAYRESILKALPASSNFTPLMTLYLTDTTSPDEIKLARKTGVVF 78 (329)
Q Consensus 7 ~~~Aa~GGvTtvidmPnt~p~------~~~--~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~el~~l~~~G~v~ 78 (329)
+..|+++|+||++-.- |-|. ..+ +-.+....+.. +.-+ +||+|.+- ++....+.|.+..++|+ +
T Consensus 14 ~~~al~sGiTT~iGgG-tGPa~Gt~att~tpg~~~i~~ml~a~-d~~P--~N~g~~gk---Gn~s~~~~l~eqi~aGa-~ 85 (389)
T d1e9yb2 14 IPTAFASGVTTMIGGG-TGPADGTNATTITPGRRNLKWMLRAA-EEYS--MNLGFLAK---GNASNDASLADQIEAGA-I 85 (389)
T ss_dssp HHHHHHTTEEEEEEEC-CSSCHHHHHCCCCCHHHHHHHHHHHH-TTSS--SEEEEEEE---CCCSCHHHHHHHHHTTC-S
T ss_pred HHHHHhcCCeEEecCc-cCCCCCCCccccCCChhHHHHHHHhh-hcCC--cceeeeec---cCCCChHHHHHHHHhcc-c
Confidence 3578999999999883 3332 122 33454444444 3344 89998763 54456788999999996 6
Q ss_pred EEEEeeccccccCCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 020186 79 AVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHI 158 (329)
Q Consensus 79 ~~K~f~~~~~~~~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~Hv 158 (329)
++|+.-.+ +-+ . ..+..+|+.+-+.|+-|.+|...-.. .-.+.. .++..-|.-+|..|+
T Consensus 86 GlKiHEDw-------Gat-p-~~Id~~L~vad~~dvqv~iHtDtlNE--------~Gfve~----T~~a~~gRtiH~~Ht 144 (389)
T d1e9yb2 86 GFKIHEDW-------GTT-P-SAINHALDVADKYDVQVAIHTDTLNE--------AGCVED----TMAAIAGRTMHTFHT 144 (389)
T ss_dssp EEEECGGG-------CCC-H-HHHHHHHHHHHHTTCEEEECCCTTCS--------SCCHHH----HHHHHTTCCEEETTT
T ss_pred eeeccccc-------cCC-H-HHHHHHHHHHHhhCceEEecCCCccc--------ccchhh----HHHHhCCCcceeeec
Confidence 99998533 222 2 67889999999999999999873211 112322 234455888999998
Q ss_pred CCHH---HHHHHHcccCCc-eEEEecc
Q 020186 159 TTMD---AVKFVESCKEGF-VAATVTP 181 (329)
Q Consensus 159 St~~---sl~~i~~ak~~~-vt~Et~p 181 (329)
--+. +=|+|+-+...+ +-..|.|
T Consensus 145 EGaGGGHAPDii~~~~~~nvLpsSTnP 171 (389)
T d1e9yb2 145 EGAGGGHAPDIIKVAGEHNILPASTNP 171 (389)
T ss_dssp TSTTSCSTTTGGGGGGSTTEEEEECGG
T ss_pred CCCCCCCccHHHHHccCCCccCCCCCC
Confidence 6544 567777665423 3444444
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.61 E-value=0.21 Score=41.07 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=80.0
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHcccCCceEEEe
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITTMDAVKFVESCKEGFVAATV 179 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt~~sl~~i~~ak~~~vt~Et 179 (329)
+.+..+++.+.+.|.++..|+...+.. . .. . ...+.....+...|.-+.+..+++.+.+ ..+-.
T Consensus 158 ~~~~~~~~~a~~~g~~~~~h~~~~~~~-~-------~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 221 (301)
T d2puza2 158 KEIDRVFAAAQQRGLPVKLHAEQLSNL-G-------GA---E--LAASYNALSADHLEYLDETGAKALAKAG---TVAVL 221 (301)
T ss_dssp HHHHHHHHHHHHTTCCBEEEESSSSCC-S-------HH---H--HHHHTTCSEEEECTTCCHHHHHHHHHHT---CEEEE
T ss_pred HHHHHHHHHHHHCCCceeeecccccch-h-------HH---H--HHhhhccceeeeeecchHHHHHHHHhcC---Ceeee
Confidence 677888889999999999998765432 0 01 1 2233333444445556777777776653 34444
Q ss_pred cchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHH
Q 020186 180 TPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLY 259 (329)
Q Consensus 180 ~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll 259 (329)
||..-. .... + . .||+ ++.+..|.-- .++||+.|... ....+...+-+
T Consensus 222 ~~~~~~---~~~~----~-~---~~~~---------~~~~~~Gv~v-~lGTD~~~~~~----------~~~~l~~~~~~- 269 (301)
T d2puza2 222 LPGAFY---ALRE----K-Q---LPPV---------QALRDAGAEI-ALATDCNPGTS----------PLTSLLLTMNM- 269 (301)
T ss_dssp CHHHHH---HHTC----C-C---CCCH---------HHHHHHTCCE-EECCCCCSSSC----------CBCCHHHHHHH-
T ss_pred ccchhh---hhcc----c-c---cchH---------HHHHHCCCeE-EEEeCCCCCCC----------ccchHHHHHHH-
Confidence 443211 1111 1 1 1332 3344457654 89999755321 11222111111
Q ss_pred HHHHHhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 260 AKVFEEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 260 ~~~~~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
.+...+++..++++..+.||||.+|+..
T Consensus 270 -~~~~~gl~~~eal~~aT~~~A~~LGl~~ 297 (301)
T d2puza2 270 -GATLFRMTVEECLTATTRNAAKALGLLA 297 (301)
T ss_dssp -HHHHHCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 1223478999999999999999999953
|
| >d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 4-oxalomesaconate hydratase LigJ species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.27 E-value=1.4 Score=37.56 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCceeEEEEeecccccc-CCCCccChHHHHHHHHHHhhHcCCcEEEecCCCCCCCC----h--hHHHHHHH
Q 020186 65 PDEIKLARKTGVVFAVKLYPAGATTN-SQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVD----I--FDREKVFI 137 (329)
Q Consensus 65 ~~el~~l~~~G~v~~~K~f~~~~~~~-~~~~~~d~~~~l~~~l~~~~~~~~~v~vHaEd~~~~~~----~--~~~E~~av 137 (329)
..|+....+.+...++|+.+...... .+..++| ..++.+++.+.++|+++.+|+........ . ...+..++
T Consensus 125 ~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d--~~~~~~~~~~~~~glpv~~H~~~~~~~~~~~~~~~~~~~~~~~~ 202 (342)
T d2gwga1 125 IPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTD--RIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAF 202 (342)
T ss_dssp HHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTS--GGGHHHHHHHHHHTCCEEECCCC---------TTHHHHHHHHHH
T ss_pred HHHHhhhHhhccceEEEEeccccccccCCCCCCC--HHHHHHHHHhhcCCCeEEEccCCCcCcccccccccccchhhhhh
Confidence 34666555443356999876431111 1223445 78999999999999999999986542211 1 12222222
Q ss_pred HHH-HHHHHHhcCCCeEEEEecCCH-----HHHHHHHcccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhh
Q 020186 138 DTI-LQPLIQRLPQLKVVMEHITTM-----DAVKFVESCKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIH 211 (329)
Q Consensus 138 ~~~-~~~~la~~~~~~lhi~HvSt~-----~sl~~i~~ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~d 211 (329)
... +...+.++.+.++.+.|.... +......... . .....+.+. ...+.. ++.-....
T Consensus 203 ~~l~~~~~~~~~P~lk~v~~H~g~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~----~~~~~~-~~~~~~~~ 266 (342)
T d2gwga1 203 MQCVAGDLFKDFPELKFVIPHGGGAVPYHWGRFRGLAQEM-K----------KPLLEDHVL----NNIFFD-TCVYHQPG 266 (342)
T ss_dssp HHHHHSCHHHHCTTCCEEESGGGTTTGGGHHHHHHHHHHT-T----------CCCHHHHTT----TTEEEE-CCCCSHHH
T ss_pred HHHHHhhhhhhcccchhhhhhcccccchHHHHHHHHHhhc-c----------cccchhhhh----cceeec-cccCCHHH
Confidence 222 111245789999999996421 1111111100 0 000111111 112222 22223444
Q ss_pred HHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcC
Q 020186 212 RQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 212 r~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifg 285 (329)
-+.|.+.+--..| +.|||- ||....-....+..-... ...+. ....+|-++.-+++..|++|+|+
T Consensus 267 l~~l~~~~G~dRi--mfGSD~-P~~~~~~~~~~~~~~~~~----~~~~~--~~~~Ls~~~~~~I~~~NA~rly~ 331 (342)
T d2gwga1 267 IDLLNTVIPVDNV--LFASEM-IGAVRGIDPRTGFYYDDT----KRYIE--ASTILTPEEKQQIYEGNARRVYP 331 (342)
T ss_dssp HHHHHHHSCGGGE--ECCCCC-SSSCCCEETTTTEETTCT----HHHHH--HCSSSCHHHHHHHHTHHHHHHCH
T ss_pred HHHHHHHhCCCeE--EEeCCC-CCCccCCCcccccchhHH----HHHHH--HcCCCCHHHHHHHHhHHHHHHHH
Confidence 5566666633454 789995 775433211111111111 11110 11356888889999999999993
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=94.24 E-value=0.2 Score=42.60 Aligned_cols=139 Identities=20% Similarity=0.079 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecCC--HHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHITT--MDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvSt--~~sl~~i~~ak~~~vt~ 177 (329)
..+.+-++.+++++.|+++|+-+.. .. +..++ .-......++ |.|.=| .+.++.+-+
T Consensus 112 ~vF~~ql~lA~~~~lPviiH~r~a~---------~~-~~~il--~~~~~~~~~~-i~H~fsG~~~~~~~~l~-------- 170 (260)
T d1j6oa_ 112 RVFVEQIELAGKLNLPLVVHIRDAY---------SE-AYEIL--RTESLPEKRG-VIHAFSSDYEWAKKFID-------- 170 (260)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESCH---------HH-HHHHH--HHSCCCSSCE-EETTCCSCHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCcceEEeeccch---------HH-HHHHH--HhhcCCCCCe-eeeccccCHHHHHHHHh--------
Confidence 4566778888999999999987541 11 22222 1112223455 446533 333333221
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChh--hHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREI--HRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVA 255 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~--dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~ 255 (329)
.|.++-+++++-... +...+.+.+=.+.| ++-|| +|+...+.. .|-.+....
T Consensus 171 ------------------~g~~is~~g~~~~~~~~~~~~~v~~iPldrl--llETD-~P~l~p~~~-----~~~~n~P~~ 224 (260)
T d1j6oa_ 171 ------------------LGFLLGIGGPVTYPKNEALREVVKRVGLEYI--VLETD-CPFLPPQPF-----RGKRNEPKY 224 (260)
T ss_dssp ------------------HTEEEEECGGGGCTTCHHHHHHHHHHCGGGE--EECCC-BTSCCCGGG-----TTSCCCGGG
T ss_pred ------------------CCCceeeccccccchHHHHHHHHHhcccceE--EEecC-CCCCCCccc-----CCCCCChHH
Confidence 123444444332221 22234455544554 67888 476533211 122222335
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhhhhhhcC
Q 020186 256 LSLYAKVFE--EMGALDKLEAFTSFNGPDFYG 285 (329)
Q Consensus 256 lpll~~~~~--~~~~l~~~v~~~s~nPAkifg 285 (329)
++.++..+. +.++.+.+.+.+..|.-|+|+
T Consensus 225 l~~v~~~iA~~~~~~~~ev~~~~~~N~~rlF~ 256 (260)
T d1j6oa_ 225 LKYVVETISQVLGVPEAKVDEATTENARRIFL 256 (260)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 666655442 477999999999999999986
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.34 Score=41.06 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=36.7
Q ss_pred EEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHH--hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 227 FLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFE--EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 227 ~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~--~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
++-||- |+...+...+ ...|-.+-...++..++.+. +.++.+.+.+.+..|--|+|||.
T Consensus 199 llETD~-P~~~p~~~~~-~~~~~~NeP~~l~~v~~~lA~~~g~~~~ev~~~~~~N~~~~f~l~ 259 (260)
T d1xwya1 199 LIETDA-PYLLPRDLTP-KPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIA 259 (260)
T ss_dssp EECCCT-TSCCCTTCTT-CCCSSCCCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCCC
T ss_pred eeecCC-CCCCCccccc-cccCCCCChHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCC
Confidence 678884 6543221000 01133333346776665443 46799999999999999999983
|
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=2.8 Score=35.19 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHH-------HH-HHHHhcCCCeEEEEecC--CHHHHHHHHc
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTI-------LQ-PLIQRLPQLKVVMEHIT--TMDAVKFVES 169 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~-------~~-~~la~~~~~~lhi~HvS--t~~sl~~i~~ 169 (329)
+.+.++++.+++.|.++.+|..... .|..++... .. ..-....+-++.+.|.. +.+.++++++
T Consensus 146 e~l~~~~~~a~~~g~~~~~H~~e~~-------~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~~e~~~l~~ 218 (313)
T d2uz9a2 146 TLMGELGNIAKTRDLHIQSHISENR-------DEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHE 218 (313)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCSH-------HHHHHHHHHSTTSSSHHHHHHHTTCCSTTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccccceeeehhcch-------hHHHHHHHhhcccCChHHHHHHcCCcCCcceEEeeeecchhHHHHHhh
Confidence 7889999999999999999987431 122222110 10 01112345677788887 6788888876
Q ss_pred ccCCceEEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCc
Q 020186 170 CKEGFVAATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGI 249 (329)
Q Consensus 170 ak~~~vt~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi 249 (329)
. .+..-.||..-... +.+ .||+ .+| +..|.- ..+|||.++.. +.
T Consensus 219 ~---g~~~~~~P~~~~~~-------~~~-----~~~v------~~l---~~~Gv~-valGTD~~~~~-----------~~ 262 (313)
T d2uz9a2 219 R---GASIAHCPNSNLSL-------SSG-----FLNV------LEV---LKHEVK-IGLGTDVAGGY-----------SY 262 (313)
T ss_dssp H---TCEEEECHHHHHHT-------TCC-----CCCH------HHH---HHTTCE-EEECCCTTTSC-----------CC
T ss_pred h---cccccccchhhhhc-------ccc-----ccch------hhh---hccCce-EEEeCCCCCCC-----------CC
Confidence 4 56777888753321 111 2332 233 344654 48999965321 11
Q ss_pred cch-hHHHHHHHHH-H-H-----hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 250 YNA-PVALSLYAKV-F-E-----EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 250 ~~~-e~~lpll~~~-~-~-----~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.-+ |.....++.. . . ..++.+++++..+.|+||.+|+.
T Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT~ngA~aLg~~ 308 (313)
T d2uz9a2 263 SMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLD 308 (313)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 212 1222222221 1 1 13689999999999999999995
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=87.68 E-value=5.7 Score=31.75 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHcccCCceEEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLK-VVMEHITTMDAVKFVESCKEGFVAAT 178 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~-lhi~HvSt~~sl~~i~~ak~~~vt~E 178 (329)
..+.+..+.+++.+..+..|+...+.. .... ...+..... .|..|+ +.+.++++.+. ....-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~h~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~ 219 (300)
T d2bb0a2 157 SQSRRYLQKAAEAGFGLKIHADEIDPL---------GGAE----LAGKLKAVSADHLVGT-SDEGIKKLAEA---GTIAV 219 (300)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSSCC---------SHHH----HHHHTTCSEEEECTTC-CHHHHHHHHHH---TCEEE
T ss_pred HHHHHHHHHHHhhhhcccccccchhhh---------HHHH----HHHHhCCceEEEeeec-cHHHHHHHHhc---Cccee
Confidence 677888888999999999998755321 0111 112222222 233332 45666666654 33444
Q ss_pred ecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHH
Q 020186 179 VTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSL 258 (329)
Q Consensus 179 t~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpl 258 (329)
.||-.= ..+. .+.+ +| -+. .+..|.- +.++||+.+.+.. + ..+ +--
T Consensus 220 ~~~~s~----~~l~---~~~~----~~------~~~---l~~~Gv~-v~lgTD~~~~~~~---------~-~~l---~~~ 265 (300)
T d2bb0a2 220 LLPGTT----FYLG---KSTY----AR------ARA---MIDEGVC-VSLATDFNPGSSP---------T-ENI---QLI 265 (300)
T ss_dssp ECHHHH----HHTT---CCCC----CC------HHH---HHHTTCC-EEECCCBBTTTBC---------C-CCH---HHH
T ss_pred ecchhh----hhhh---cccc----cc------HHH---HHHCCCE-EEEEeCCCCCCCc---------h-hhH---HHH
Confidence 555210 0011 1111 12 122 3445654 4899998653211 1 111 111
Q ss_pred HHHHH-HhcCCHHHHHHHHhhhhhhhcCCCC
Q 020186 259 YAKVF-EEMGALDKLEAFTSFNGPDFYGLPR 288 (329)
Q Consensus 259 l~~~~-~~~~~l~~~v~~~s~nPAkifgl~~ 288 (329)
+...+ ..++|..++++..+.||||.+|+..
T Consensus 266 ~~~a~~~~gl~~~eal~~aT~~~A~~lG~~~ 296 (300)
T d2bb0a2 266 MSIAALHLKMTAEEIWHAVTVNAAYAIGKGE 296 (300)
T ss_dssp HHHHHHHSCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCcch
Confidence 22222 3478999999999999999999953
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=86.67 E-value=6 Score=31.02 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHhhhhhhhcCCC
Q 020186 266 MGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 266 ~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.++-+..-+++..|++|+||++
T Consensus 250 ~l~~~~~~~il~~NA~rlfg~d 271 (271)
T d2ffia1 250 GCSAQLRQALLLDTARALFGFE 271 (271)
T ss_dssp CCCHHHHHHHHTHHHHHHTTCC
T ss_pred CCCHHHHHHHHhHHHHHHhCcC
Confidence 5788889999999999999983
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=85.31 E-value=0.75 Score=36.89 Aligned_cols=136 Identities=13% Similarity=0.032 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCceEE
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFVAA 177 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~~~~~E~~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~vt~ 177 (329)
....+........+..+..|+...... ...+.. ...+. ..+.|.. +.+.++++.+. .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~h~~~~~~~---------~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~ 219 (301)
T d2q09a2 158 AQTEQVYLAADQYGLAVKGHMDQLSNL---------GGSTLA-----ANFGA-LSVDHLEYLDPEGIQALAHR---GVVA 219 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSCCC---------SHHHHH-----HHTTC-SEEEECTTCCHHHHHHHHHH---TCEE
T ss_pred hhHHHHHHHHHHhcccceecccccchh---------HHHHHH-----HhcCC-ceEeeeecCcHHHHHHHHHc---CCCc
Confidence 455556666777788888898754321 011111 11122 2344443 56777777764 4566
Q ss_pred EecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHH
Q 020186 178 TVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALS 257 (329)
Q Consensus 178 Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lp 257 (329)
-.||..-.. +.. +. .|| +.+..+.|.-= .|+||+.|.+. ++ ..+ .-
T Consensus 220 ~~~~~s~~~----l~~---~~----~~~---------~~~l~~aGv~v-~lGTD~~~~~~---------~~-~~l---~~ 265 (301)
T d2q09a2 220 TLLPTAFYF----LKE---TK----LPP---------VVALRKAGVPM-AVSSDINPGTA---------PI-VSL---RM 265 (301)
T ss_dssp EECHHHHHH----TTC---CC----CCC---------HHHHHHTTCCE-EECCCCBTTTB---------CC-CCH---HH
T ss_pred ccCccHHhh----hcc---cc----cCc---------HHHHHHCCCeE-EEEeCCCCCCC---------Cc-chH---HH
Confidence 667743211 100 11 133 22344557654 89999865321 11 111 11
Q ss_pred HHHHHH-HhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 258 LYAKVF-EEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 258 ll~~~~-~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.+...+ ..+++..++++..+.||||.+|+.
T Consensus 266 ~~~~~~~~~glt~~eal~~aT~~~A~~lG~~ 296 (301)
T d2q09a2 266 AMNMACTLFGLTPVEAMAGVTRHAARALGEQ 296 (301)
T ss_dssp HHHHHHHHHCCCHHHHHHHTTHHHHHHTTCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCcc
Confidence 111112 347899999999999999999995
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=84.13 E-value=5 Score=33.37 Aligned_cols=150 Identities=12% Similarity=0.062 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhHcCCcEEEecCCCCCCCC-hhHHHH-HHHHHHHHHHHHhcCCCeEEEEecC--CHHHHHHHHcccCCce
Q 020186 100 GKCVHVLEEMVEQNMPLLVHGEVTDPIVD-IFDREK-VFIDTILQPLIQRLPQLKVVMEHIT--TMDAVKFVESCKEGFV 175 (329)
Q Consensus 100 ~~l~~~l~~~~~~~~~v~vHaEd~~~~~~-~~~~E~-~av~~~~~~~la~~~~~~lhi~HvS--t~~sl~~i~~ak~~~v 175 (329)
..+....+.+.+.+.++.+|+....-... ...... ..+.. + ......+..+...|.. +...+++++.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~h~~~~~~~~~~~l~~~---~~ 233 (336)
T d2paja2 160 REMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYGKSPVAF-C--GEHDWLGSDVWYAHLVKVDADEIALLAQT---GT 233 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEEECC-------------CCCHHHH-H--HHTTCCSTTEEEESCCSCCHHHHHHHHHH---TC
T ss_pred HHHHHHHhhhhccCCceeeeccccchhhHHHHHhcCCccccc-c--ccccccccccccccceecchHHHHHHhhc---cc
Confidence 77888889999999999999875421100 000000 01111 1 2234456677777864 66667766653 45
Q ss_pred EEEecchhhhcchhhhcCCCCCCceEEcCCCCChhhHHHHHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccch-hH
Q 020186 176 AATVTPQHLVLNRNALFQGGLRPHNYCLPVLKREIHRQAVVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNA-PV 254 (329)
Q Consensus 176 t~Et~phhL~l~~~~~~~~~~~~~~k~~PPLR~~~dr~aLw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~-e~ 254 (329)
..-.||..-.. .+ .-.||+|.- + ..|.- +.+|||..+-.. ...-+ |.
T Consensus 234 ~~~~~p~~~~~---------~~---~~~~~~~~l------~---~~Gv~-valGTD~~~s~~----------~~d~~~em 281 (336)
T d2paja2 234 GVAHCPQSNGR---------LG---SGICPVREM------A---DAGVP-VSIGVDGAASNE----------AADMISEV 281 (336)
T ss_dssp EEEECHHHHHC---------C--------CCTTH------H---HHTCC-EEECCCHHHHCS----------CCSHHHHH
T ss_pred cceeccchhhc---------cC---ccccchhhH------H---hcCCe-EEEEcCCCCCCC----------cccHHHHH
Confidence 66777754321 11 123555433 2 33554 489999542110 11111 12
Q ss_pred HHHHHHH------------------HHHhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 255 ALSLYAK------------------VFEEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 255 ~lpll~~------------------~~~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.+.+++. .-...++.+++++..+.|+||.+|++
T Consensus 282 r~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~aLgld 332 (336)
T d2paja2 282 HMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLD 332 (336)
T ss_dssp HHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCT
T ss_pred HHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHHhCcc
Confidence 2222111 01124689999999999999999995
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=82.37 E-value=0.61 Score=37.46 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=24.5
Q ss_pred HHHHHHH-hcCCHHHHHHHHhhhhhhhcCCC
Q 020186 258 LYAKVFE-EMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 258 ll~~~~~-~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
.++..++ .++|+++++++.+.||||++||.
T Consensus 263 ~~~~~v~~~gls~~~al~~aT~n~A~~LGld 293 (297)
T d1yrra2 263 GVRNLVEHCGIALDEVLRMATLYPARAIGVE 293 (297)
T ss_dssp HHHHHHHHHCCCHHHHHHHHTHHHHHHTTCT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 3444444 48899999999999999999995
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=81.26 E-value=0.76 Score=37.06 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=37.3
Q ss_pred HHHHHHcCCCCeEEecCCCCCCcCcccccCCcCCccchhHHHHHHHHHHHhcCCHHHHHHHHhhhhhhhcCCC
Q 020186 215 VVSAVTSGSRKFFLGTDSAPHERGRKECACGCAGIYNAPVALSLYAKVFEEMGALDKLEAFTSFNGPDFYGLP 287 (329)
Q Consensus 215 Lw~al~~G~Id~~i~SDHaPh~~~eK~~~~~~~Gi~~~e~~lpll~~~~~~~~~l~~~v~~~s~nPAkifgl~ 287 (329)
+.+....|.-- ++|||+ |.. ++....+ -|....+..+|..++++..+.||||.+|+.
T Consensus 250 ~~~l~~~Gv~v-~lGTD~-~~~----------~~~~~~~----el~~~~~~Gls~~eaL~~aT~~~A~~LGl~ 306 (310)
T d2qs8a2 250 FRKAYEKGVKI-AFGTDA-GVQ----------KHGTNWK----EFVYMVENGMPAMKAIQSATMETAKLLRIE 306 (310)
T ss_dssp HHHHHHHTCCB-CCCCCB-TTB----------CTTCTTH----HHHHHHHTTCCHHHHHHHTTHHHHHHTTCT
T ss_pred HHHHHHCCCeE-EEecCC-CCC----------CccHHHH----HHHHHHHcCCCHHHHHHHHHHHHHHHhCcC
Confidence 55566677765 899997 221 1221111 111123346899999999999999999995
|