Citrus Sinensis ID: 020187

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MELYMRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTKPTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFNA
cHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHcccEEEEEccccccccccccccccccccHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHHccHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccEcccccccccccccccccccccccccEccccEccHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHccEccEccHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccc
MELYMRLLWGSALALALWINLASaeqcgsqaggavcpgglccskfgfcgntpayctggcqsqcsgspsprptkptpvpapsgggnnigslISRDLFEQLLKHRndaacqgkgfyTYDAFIAAAKsfgafgttgdtdTRKREIAAFLAQTshettggwptapdgpyawgycfkqeqgnpgdycqpsqqwpcapgkkyfgrgpiqisynynygpagkainvdllgnpdavandptisfktafwfwmtpqspkpschdvitgqwkpsasdtqagrlpgygvVTNIINggiecgkgsnpnaedriGFYKRYCDILKVsygnnldcnnqrpfna
MELYMRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTKPTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLaqtshettggwpTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSygnnldcnnqrpfna
MELYMRLLWGSalalalWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTggcqsqcsgspsprptkptpvpapsgggnnigslisRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFgttgdtdtRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFNA
**LYMRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGC****************************GSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQ****SCHDVITGQWK*******AGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC********
***Y*RLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTKPTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSF****TTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF**
MELYMRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGC*****************VPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFNA
*ELYMRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCS*********************NIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQR****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELYMRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTKPTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q9FRV1321 Basic endochitinase A OS= N/A no 0.948 0.971 0.687 1e-129
P51613314 Basic endochitinase OS=Vi no no 0.924 0.968 0.708 1e-126
Q05538322 Basic 30 kDa endochitinas N/A no 0.887 0.906 0.704 1e-124
P52403318 Endochitinase 1 (Fragment N/A no 0.887 0.918 0.701 1e-123
P08252329 Endochitinase A OS=Nicoti N/A no 0.899 0.899 0.717 1e-123
P52405318 Endochitinase 3 (Fragment N/A no 0.887 0.918 0.701 1e-123
P24091324 Endochitinase B OS=Nicoti N/A no 0.884 0.898 0.703 1e-122
P52404316 Endochitinase 2 (Fragment N/A no 0.881 0.917 0.694 1e-122
P11955318 26 kDa endochitinase 1 OS N/A no 0.902 0.933 0.720 1e-119
P25765326 Chitinase 12 OS=Oryza sat no no 0.972 0.981 0.660 1e-119
>sp|Q9FRV1|CHIA_SECCE Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1 Back     alignment and function desciption
 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/314 (68%), Positives = 248/314 (78%), Gaps = 2/314 (0%)

Query: 14  ALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTK 73
            LA+ + +A AEQCGSQAGGA CP  LCCS+FG+CG+T  YC  GCQSQC+G        
Sbjct: 9   VLAMAVTMAVAEQCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQCAGCGGGGTPV 68

Query: 74  PTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTG 133
                   GGG  + S++SR LF+++L HRND ACQ KGFYTYDAF+AAA +F  FGTTG
Sbjct: 69  TPTPTPSGGGG--VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTG 126

Query: 134 DTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPG 193
            TDTRKRE+AAFLAQTSHETTGGW TAPDG +AWGYCFKQE+G   +YC PS QWPCAPG
Sbjct: 127 STDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPG 186

Query: 194 KKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSC 253
           K Y+GRGPIQ+S+NYNYGPAG+AI VDLL NPD VA DPT+SFKTA WFWMT Q+PKPS 
Sbjct: 187 KSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSS 246

Query: 254 HDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKV 313
           H VITGQW PS +D  AGR+PG+GV+TNI+NGGIECG G +    DRIGFYKRYCDIL+V
Sbjct: 247 HAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRV 306

Query: 314 SYGNNLDCNNQRPF 327
            YGNNLDC NQRPF
Sbjct: 307 GYGNNLDCYNQRPF 320
Defense against chitin containing fungal pathogens. Binds the hyphal tips, lateral walls and septa of fungi and degrades mature chitin.
Secale cereale (taxid: 4550)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4
>sp|P51613|CHIB_VITVI Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1 Back     alignment and function description
>sp|Q05538|CHIC_SOLLC Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1 Back     alignment and function description
>sp|P52403|CHI1_SOLTU Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1 Back     alignment and function description
>sp|P08252|CHI1_TOBAC Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2 Back     alignment and function description
>sp|P52405|CHI3_SOLTU Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1 Back     alignment and function description
>sp|P24091|CHI2_TOBAC Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1 Back     alignment and function description
>sp|P52404|CHI2_SOLTU Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1 Back     alignment and function description
>sp|P11955|CHI1_HORVU 26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4 Back     alignment and function description
>sp|P25765|CHI12_ORYSJ Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
183579873283 chitinase [Citrus unshiu] 0.844 0.982 0.964 1e-146
357966793322 chitinase [Camellia sinensis] 0.948 0.968 0.755 1e-137
359494716325 PREDICTED: basic endochitinase [Vitis vi 0.972 0.984 0.737 1e-136
359494718324 PREDICTED: LOW QUALITY PROTEIN: endochit 0.917 0.932 0.788 1e-136
10880381325 chitinase [Vitis vinifera] 0.972 0.984 0.734 1e-136
6164588320 chitinase [Poa pratensis] 0.966 0.993 0.724 1e-135
147805840325 hypothetical protein VITISV_033490 [Viti 0.972 0.984 0.731 1e-135
260505591322 chitinase [Camellia sinensis] 0.948 0.968 0.742 1e-134
224553640317 chitinase Ib [Chimonanthus praecox] 0.963 1.0 0.710 1e-131
6164585340 chitinase [Poa pratensis] 0.966 0.935 0.701 1e-131
>gi|183579873|dbj|BAG28346.1| chitinase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/278 (96%), Positives = 272/278 (97%)

Query: 5   MRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCS 64
           MRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCT GCQSQCS
Sbjct: 1   MRLLWGSALALALWINLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCS 60

Query: 65  GSPSPRPTKPTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAK 124
           GSPSP PT PTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAA 
Sbjct: 61  GSPSPTPTNPTPVPAPSGGGNNIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAN 120

Query: 125 SFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQP 184
           SFGAFGTTG+TDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQP
Sbjct: 121 SFGAFGTTGNTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQP 180

Query: 185 SQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWM 244
           SQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLL NPDAVANDPTISFKTAFWFWM
Sbjct: 181 SQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLRNPDAVANDPTISFKTAFWFWM 240

Query: 245 TPQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNI 282
           T QSPKPSCHDVITGQWKPSA+DTQAGRLPGYGV+TN+
Sbjct: 241 TRQSPKPSCHDVITGQWKPSAADTQAGRLPGYGVITNM 278

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357966793|gb|AET95643.1| chitinase [Camellia sinensis] Back     alignment and taxonomy information
>gi|359494716|ref|XP_002269972.2| PREDICTED: basic endochitinase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359494718|ref|XP_002269727.2| PREDICTED: LOW QUALITY PROTEIN: endochitinase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|10880381|emb|CAC14015.1| chitinase [Vitis vinifera] Back     alignment and taxonomy information
>gi|6164588|gb|AAF04454.1|AF000966_1 chitinase [Poa pratensis] Back     alignment and taxonomy information
>gi|147805840|emb|CAN62784.1| hypothetical protein VITISV_033490 [Vitis vinifera] Back     alignment and taxonomy information
>gi|260505591|gb|ACX42261.1| chitinase [Camellia sinensis] Back     alignment and taxonomy information
>gi|224553640|gb|ACN55075.1| chitinase Ib [Chimonanthus praecox] Back     alignment and taxonomy information
>gi|6164585|gb|AAF04453.1|AF000964_1 chitinase [Poa pratensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
UNIPROTKB|Q9FRV1321 rsca "Basic endochitinase A" [ 0.714 0.732 0.723 6.1e-114
UNIPROTKB|P24626320 Cht3 "Chitinase 3" [Oryza sati 0.708 0.728 0.722 1e-111
UNIPROTKB|Q42993323 Cht1 "Chitinase 1" [Oryza sati 0.914 0.931 0.644 2e-111
UNIPROTKB|Q7DNA1340 Cht2 "Chitinase 2" [Oryza sati 0.720 0.697 0.691 1e-109
UNIPROTKB|P25765326 Cht12 "Chitinase 12" [Oryza sa 0.920 0.929 0.631 1.5e-108
UNIPROTKB|Q9FRV0266 rscc "Basic endochitinase C" [ 0.705 0.872 0.715 4.5e-98
TAIR|locus:2204918272 AT1G02360 [Arabidopsis thalian 0.714 0.863 0.559 5.5e-77
TAIR|locus:2133412280 AT4G01700 [Arabidopsis thalian 0.717 0.842 0.552 3.9e-76
UNIPROTKB|A7XQ02415 A7XQ02 "Mulatexin" [Morus alba 0.823 0.653 0.431 9.8e-68
UNIPROTKB|O04138285 Cht4 "Chitinase 4" [Oryza sati 0.632 0.729 0.405 1.1e-48
UNIPROTKB|Q9FRV1 rsca "Basic endochitinase A" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
 Score = 991 (353.9 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 170/235 (72%), Positives = 192/235 (81%)

Query:    93 RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
             R LF+++L HRND ACQ KGFYTYDAF+AAA +F  F        RKRE+AAFLAQTSHE
Sbjct:    86 RALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHE 145

Query:   153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGP 212
             TTGGW TAPDG +AWGYCFKQE+G   +YC PS QWPCAPGK Y+GRGPIQ+S+NYNYGP
Sbjct:   146 TTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGP 205

Query:   213 AGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGR 272
             AG+AI VDLL NPD VA DPT+SFKTA WFWMT Q+PKPS H VITGQW PS +D  AGR
Sbjct:   206 AGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGR 265

Query:   273 LPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
             +PG+GV+TNI+NGGIECG G +    DRIGFYKRYCDIL+V YGNNLDC NQRPF
Sbjct:   266 VPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320
GO:0004568 "chitinase activity" evidence=IDA
GO:0005576 "extracellular region" evidence=IC
GO:0008061 "chitin binding" evidence=IDA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IDA
GO:0050832 "defense response to fungus" evidence=IDA
UNIPROTKB|P24626 Cht3 "Chitinase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42993 Cht1 "Chitinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P25765 Cht12 "Chitinase 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133412 AT4G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A7XQ02 A7XQ02 "Mulatexin" [Morus alba (taxid:3498)] Back     alignment and assigned GO terms
UNIPROTKB|O04138 Cht4 "Chitinase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09023CHI2_BRANA3, ., 2, ., 1, ., 1, 40.66880.88440.9037N/Ano
P19171CHIB_ARATH3, ., 2, ., 1, ., 1, 40.64910.89050.8746yesno
P36907CHIX_PEA3, ., 2, ., 1, ., 1, 40.63910.96960.9968N/Ano
Q05537CHID_SOLLC3, ., 2, ., 1, ., 1, 40.74380.73550.9837N/Ano
P23951CHI2_HORVU3, ., 2, ., 1, ., 1, 40.71480.73550.9097N/Ano
P36361CHI5_PHAVU3, ., 2, ., 1, ., 1, 40.63770.93610.9418N/Ano
Q41596CHI1_THECC3, ., 2, ., 1, ., 1, 40.66560.91790.9408N/Ano
Q05538CHIC_SOLLC3, ., 2, ., 1, ., 1, 40.70450.88750.9068N/Ano
P06215CHIT_PHAVU3, ., 2, ., 1, ., 1, 40.64190.93610.9390N/Ano
Q9SAY3CHI7_ORYSI3, ., 2, ., 1, ., 1, 40.57320.89660.8676N/Ano
Q39785CHI2_GOSHI3, ., 2, ., 1, ., 1, 40.68620.88140.9602N/Ano
Q9FRV0CHIC_SECCE3, ., 2, ., 1, ., 1, 40.71900.73550.9097N/Ano
Q9FRV1CHIA_SECCE3, ., 2, ., 1, ., 1, 40.68780.94830.9719N/Ano
P08252CHI1_TOBAC3, ., 2, ., 1, ., 1, 40.71710.89960.8996N/Ano
P29059CHI3_TOBAC3, ., 2, ., 1, ., 1, 40.68720.92400.9101N/Ano
P51613CHIB_VITVI3, ., 2, ., 1, ., 1, 40.70890.92400.9681nono
P21226CHI2_PEA3, ., 2, ., 1, ., 1, 40.65010.93310.9475N/Ano
P24091CHI2_TOBAC3, ., 2, ., 1, ., 1, 40.70390.88440.8981N/Ano
P52405CHI3_SOLTU3, ., 2, ., 1, ., 1, 40.70120.88750.9182N/Ano
P52404CHI2_SOLTU3, ., 2, ., 1, ., 1, 40.69480.88140.9177N/Ano
P52406CHI4_SOLTU3, ., 2, ., 1, ., 1, 40.73190.86620.9437N/Ano
P11955CHI1_HORVU3, ., 2, ., 1, ., 1, 40.72030.90270.9339N/Ano
P52403CHI1_SOLTU3, ., 2, ., 1, ., 1, 40.70120.88750.9182N/Ano
P85084CHIT_CARPA3, ., 2, ., 1, ., 1, 40.70950.73250.9917N/Ano
P05315CHIT_SOLTU3, ., 2, ., 1, ., 1, 40.66770.89660.8993N/Ano
Q39799CHI1_GOSHI3, ., 2, ., 1, ., 1, 40.68050.90270.9166N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.140.991
3rd Layer3.2.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
pfam00182232 pfam00182, Glyco_hydro_19, Chitinase class I 1e-154
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 1e-145
cd00442105 cd00442, lysozyme_like, lysozyme_like domain 2e-15
cd0692140 cd06921, ChtBD1_GH19_hevein, Hevein or Type 1 chit 3e-15
pfam0018738 pfam00187, Chitin_bind_1, Chitin recognition prote 2e-14
smart0027038 smart00270, ChtBD1, Chitin binding domain 2e-13
cd0003539 cd00035, ChtBD1, Hevein or type 1 chitin binding d 4e-13
COG3179206 COG3179, COG3179, Predicted chitinase [General fun 8e-09
cd1161844 cd11618, ChtBD1_1, Hevein or type 1 chitin binding 1e-05
>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information 
 Score =  431 bits (1111), Expect = e-154
 Identities = 183/232 (78%), Positives = 201/232 (86%)

Query: 90  LISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQT 149
           +++R LF+Q+LKHRND AC GKGFYTYDAFIAAA SF  FGTTGD DTRKREIAAF AQT
Sbjct: 1   IVTRSLFDQMLKHRNDGACPGKGFYTYDAFIAAANSFPGFGTTGDDDTRKREIAAFFAQT 60

Query: 150 SHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYN 209
           SHETTGGW TAPDGPYAWGYCF +EQ  P DYC PS QWPCAPGKKY+GRGPIQ+S+NYN
Sbjct: 61  SHETTGGWYTAPDGPYAWGYCFVREQNPPSDYCTPSAQWPCAPGKKYYGRGPIQLSWNYN 120

Query: 210 YGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQ 269
           YGPAG+AI  DLL NPD VA DP ISFKTA WFWMTPQSPKPSCHDVITGQW PSA+D+ 
Sbjct: 121 YGPAGQAIGFDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGQWTPSAADSA 180

Query: 270 AGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC 321
           AGR+PG+GV+TNIINGG+ECG G+N   +DRIGFYKRYCD L VS GNNLDC
Sbjct: 181 AGRVPGFGVITNIINGGLECGGGNNARVQDRIGFYKRYCDQLGVSPGNNLDC 232

Length = 232
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
>gnl|CDD|238249 cd00442, lysozyme_like, lysozyme_like domain Back     alignment and domain information
>gnl|CDD|211312 cd06921, ChtBD1_GH19_hevein, Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains Back     alignment and domain information
>gnl|CDD|143950 pfam00187, Chitin_bind_1, Chitin recognition protein Back     alignment and domain information
>gnl|CDD|214593 smart00270, ChtBD1, Chitin binding domain Back     alignment and domain information
>gnl|CDD|211311 cd00035, ChtBD1, Hevein or type 1 chitin binding domain Back     alignment and domain information
>gnl|CDD|225720 COG3179, COG3179, Predicted chitinase [General function prediction only] Back     alignment and domain information
>gnl|CDD|211316 cd11618, ChtBD1_1, Hevein or type 1 chitin binding domain; filamentous ascomycete subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
cd00325230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
PF00182232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
KOG4742286 consensus Predicted chitinase [General function pr 100.0
COG3179206 Predicted chitinase [General function prediction o 100.0
cd00442105 lysozyme_like lysozyme_like domain. This contains 99.61
PF0018740 Chitin_bind_1: Chitin recognition protein; InterPr 99.43
smart0027038 ChtBD1 Chitin binding domain. 99.33
cd0003540 ChtBD1 Chitin binding domain, involved in recognit 99.05
cd0691851 ChtBD1_like Domain observed in several metazoan pr 97.27
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information 
Probab=100.00  E-value=7e-79  Score=561.51  Aligned_cols=230  Identities=71%  Similarity=1.347  Sum_probs=223.4

Q ss_pred             cchHHHHHHHhhcccccccCCCcccHHHHHHHHHhhhhccCCCCcccchhHHHHhhhccccccCCCCCCCCCCCCCCCcc
Q 020187           91 ISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYC  170 (329)
Q Consensus        91 vT~~~F~~ifp~~~~~~c~g~gfyty~~fi~A~~~f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~~~~~~~~wg~~  170 (329)
                      ||+++|++||++|++..|++++||||++||+|+++||+|+++|+.+++||||||||||++|||++.+..++.++++||||
T Consensus         1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c   80 (230)
T cd00325           1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC   80 (230)
T ss_pred             CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999888888999999999


Q ss_pred             cccccCCCCCCccCCCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCCCCccccccCchhhhhhhhhhhhcCCCCC
Q 020187          171 FKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPK  250 (329)
Q Consensus       171 ~~~E~~~~~~Yc~~~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW~~~~~~~  250 (329)
                      +.+|..+...||.. ++|||+||++|||||+||||||+||++++++|++|||+|||||++||.+||++|+||||+++.+|
T Consensus        81 ~~~e~~~~~~~~~~-~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k  159 (230)
T cd00325          81 DKSETGPPSSYCDP-AQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGPK  159 (230)
T ss_pred             ccccCCCccccccc-CCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCCC
Confidence            99999887788876 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCCCccccccCCCCCccchhheeeCCccCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcC
Q 020187          251 PSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDC  321 (329)
Q Consensus       251 ps~hd~i~g~w~p~~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c  321 (329)
                      |+|||||+|+|+|+++|+++++.++|+.||+|||||+||++++++++++||++|+++|++|||+||+||+|
T Consensus       160 ~s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C  230 (230)
T cd00325         160 PSCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC  230 (230)
T ss_pred             CCcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999988888999999999999999999999999999999999999999999999999

Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e Back     alignment and domain information
>smart00270 ChtBD1 Chitin binding domain Back     alignment and domain information
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K Back     alignment and domain information
>cd06918 ChtBD1_like Domain observed in several metazoan proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3cql_A243 Crystal Structure Of Gh Family 19 Chitinase From Ca 1e-102
4dwx_A244 Crystal Structure Of A Family Gh-19 Chitinase From 1e-101
2dkv_A309 Crystal Structure Of Class I Chitinase From Oryza S 1e-100
1cns_A243 Crystal Structure Of Chitinase At 1.91a Resolution 5e-97
2baa_A243 The Refined Crystal Structure Of An Endochitinase F 5e-96
3w3e_A242 Structure Of Vigna Unguiculata Chitinase With Regul 4e-92
1dxj_A242 Structure Of The Chitinase From Jack Bean Length = 1e-91
2z38_A247 Crystal Structure Of Chloride Bound Brassica Juncea 4e-85
2z37_A244 Crystal Structure Of Brassica Juncea Chitinase Cata 4e-85
2z39_A246 Crystal Structure Of Brassica Juncea Chitinase Cata 2e-84
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 2e-42
2cjl_A204 Crystal Structure And Enzymatic Properties Of A Bac 1e-31
1wvu_A265 Crystal Structure Of Chitinase C From Streptomyces 4e-29
1wvv_A265 Crystal Structure Of Chitinase C Mutant E147q Lengt 1e-28
1q9b_A43 Crystal Structure Analysis Of Hev B 6.02 (Hevein) A 1e-05
1wkx_A43 Crystal Structure Of A Hev B 6.02 Isoallergen Lengt 1e-05
1t0w_A33 25 Nmr Structures Of Truncated Hevein Of 32 Aa (Hev 2e-05
2lb7_A44 Hevein-Type Antifungal Peptide With A Unique 10-Cys 9e-04
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure 
Iteration: 1

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/235 (72%), Positives = 196/235 (83%)
Query: 93  RDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFXXXXXXXXRKREIAAFLAQTSHE 152
           R +F+Q+LKHRN+ AC  KGFYTYDAFIAAAKSF +F        RKREIAAFL QTSHE
Sbjct: 8   RSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFLGQTSHE 67
Query: 153 TTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGP 212
           TTGGWP+APDGPYAWGYCF +E+    +YC PS ++PCAPGK Y+GRGPIQ+S+NYNYGP
Sbjct: 68  TTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPIQLSWNYNYGP 127
Query: 213 AGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSASDTQAGR 272
            G+A+ V+LLGNPD VA D  ISFKTA WFWMTPQ+PKPSCHDVITG+W+PSA+DT AGR
Sbjct: 128 CGEALRVNLLGNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSAADTAAGR 187
Query: 273 LPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPF 327
           LPGYGV+TNIINGG+ECGKG NP   DRIGF++RYC IL V  GNNLDC NQRPF
Sbjct: 188 LPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDCYNQRPF 242
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes Length = 204 Back     alignment and structure
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus Hut6037 Length = 265 Back     alignment and structure
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q Length = 265 Back     alignment and structure
>pdb|1Q9B|A Chain A, Crystal Structure Analysis Of Hev B 6.02 (Hevein) At 1.5 Angstroms Resolution Length = 43 Back     alignment and structure
>pdb|1WKX|A Chain A, Crystal Structure Of A Hev B 6.02 Isoallergen Length = 43 Back     alignment and structure
>pdb|1T0W|A Chain A, 25 Nmr Structures Of Truncated Hevein Of 32 Aa (Hevein-32) Complex With N,N,N-Triacetylglucosamina Length = 33 Back     alignment and structure
>pdb|2LB7|A Chain A, Hevein-Type Antifungal Peptide With A Unique 10-Cysteine Motif Length = 44 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
2z37_A244 Chitinase; family 19, conformational changes, hydr 1e-104
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 1e-100
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 1e-97
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 2e-95
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 4e-70
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 6e-66
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 7e-66
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 5e-17
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 1e-16
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 6e-11
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 7e-09
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 5e-10
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 5e-07
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 7e-10
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 4e-09
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 4e-07
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 3e-05
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 3e-05
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 7e-05
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  305 bits (782), Expect = e-104
 Identities = 149/244 (61%), Positives = 183/244 (75%), Gaps = 1/244 (0%)

Query: 86  NIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAF 145
           ++  +ISRD F ++LKH ND  C   GF+TYDAFI AAKSF +FG TGD   RK+EIAAF
Sbjct: 1   DLSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAF 60

Query: 146 LAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPS-QQWPCAPGKKYFGRGPIQI 204
             QTSHETTGGW  APDG   WGYC+K+E      +C  +  +WPCAPGK Y+GRGP+ +
Sbjct: 61  FGQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMML 120

Query: 205 SYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPS 264
           S+NYNYGP G+ + ++LL NPD  ++DP I+FKTA WFWMTPQ+PKPSCHDVIT QW+PS
Sbjct: 121 SWNYNYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPS 180

Query: 265 ASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQ 324
           A+D  AGRLPGYGV+TNIINGG+EC        +DRI FY RYC +  V  G+N+DC+NQ
Sbjct: 181 AADISAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQ 240

Query: 325 RPFN 328
           RPFN
Sbjct: 241 RPFN 244
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Length = 44 Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Length = 43 Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Length = 89 Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Length = 89 Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Length = 82 Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Length = 82 Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Length = 126 Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Length = 126 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
2dkv_A309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3w3e_A242 Cotyledoneous yieldin-like protein; alpha helical 100.0
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
2z37_A244 Chitinase; family 19, conformational changes, hydr 100.0
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 99.46
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 99.42
1p9g_A41 EAFP 2; antifungal peptide, atomic resolution, ant 99.22
2kus_A35 SM-AMP-1.1A; plant antimicrobial peptide, chitin-b 99.04
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 98.93
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 98.93
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 98.9
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 98.87
1mmc_A30 AC-AMP2, antimicrobial peptide 2; antifungal antim 98.87
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 98.72
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 98.63
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 98.45
2uvo_A171 Agglutinin isolectin 1; carbohydrate-binding prote 98.38
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
Probab=100.00  E-value=4.6e-101  Score=733.64  Aligned_cols=298  Identities=68%  Similarity=1.352  Sum_probs=278.9

Q ss_pred             CccCCCCCCCcCCCCCccCcccccCCChhhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccchHHHHHHHhhcc
Q 020187           25 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTGGCQSQCSGSPSPRPTKPTPVPAPSGGGNNIGSLISRDLFEQLLKHRN  104 (329)
Q Consensus        25 ~~Cg~~~~~~~C~~~~CCS~~G~CG~~~~~C~~gCq~~~~~~~~~~~~~p~~~~~~~~~~~~v~~ivT~~~F~~ifp~~~  104 (329)
                      ++||+++++.+|+.+.|||+|||||++++||+.|||++|.....+  +.|+    |.++...|++|||+++|++|||||+
T Consensus         2 ~~cg~~~~~~~c~~~~Ccs~~G~Cg~t~~~Cg~gcq~~c~~~~~~--~~~~----~~~~~~~v~~iit~~~f~~~~~~rn   75 (309)
T 2dkv_A            2 EQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPT--PTPT----PPSPSDGVGSIVPRDLFERLLLHRN   75 (309)
T ss_dssp             CBCSTTTTTCCCGGGCEECTTSBEESSHHHHSTTCCBCSSCC------------------CCGGGTSCHHHHHHHTTTTT
T ss_pred             CCcCCCCCCCcCCCCCcCcccccccCChHHhhccccccCCCCCCC--CCCC----CCCCCcchhhhccHHHHHHHhhccc
Confidence            689999999999999999999999999999999999987654111  1111    1123568999999999999999999


Q ss_pred             cccccCCCcccHHHHHHHHHhhhhccCCCCcccchhHHHHhhhccccccCCCCCCCCCCCCCCCcccccccCCCCCCccC
Q 020187          105 DAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQP  184 (329)
Q Consensus       105 ~~~c~g~gfyty~~fi~A~~~f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~~~~~~~~wg~~~~~E~~~~~~Yc~~  184 (329)
                      +..|++++||||++||+|+++||+|+++|+++++||||||||||++|||+++|.++|+++|+|||+|++|+++...||++
T Consensus        76 ~~~c~~~~fyty~~fi~Aa~~fp~F~~tG~~~~~krelAaFLAq~~HETggg~~~~~~~~y~wG~~~~~E~~~~~~Yc~~  155 (309)
T 2dkv_A           76 DGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQP  155 (309)
T ss_dssp             CTTCTTTTCSCHHHHHHHHHTCTTTTCSSSHHHHHHHHHHHHHHHHHHHCCCCTTCTTCGGGCTTCCSBCSSCSCCCCCC
T ss_pred             ccCCCcCCcccHHHHHHHHHhhhhhcccCCccccHHHHHHHHhhcchhcCCCcccCCCccccccceeeeeecCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             CCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCCCCccccccCchhhhhhhhhhhhcCCCCCCCccccccCCCCCC
Q 020187          185 SQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPS  264 (329)
Q Consensus       185 ~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW~~~~~~~ps~hd~i~g~w~p~  264 (329)
                      +.+|||+||++|||||+||||||+||++++++|++|||+|||||++||++||++|+||||+++.+|||+||||+|+|+|+
T Consensus       156 ~~~~pcgdG~~Y~GRG~IQLT~~~NY~~~g~~lg~DLl~nPdlVa~dp~~A~~sA~WFW~t~~~~kps~hdvi~g~w~ps  235 (309)
T 2dkv_A          156 SPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPS  235 (309)
T ss_dssp             CSSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHHHCCBTTBCCHHHHHTTCCCCC
T ss_pred             CCCcccCCCCeeecCCcccccchhhHHHHHHHhCCccccCHHHHhcCHHHHHHhhhhheeeCCCCCCChhhhhhcccCcc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCccchhheeeCCccCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCCCC
Q 020187          265 ASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQRPFN  328 (329)
Q Consensus       265 ~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c~~~~~f~  328 (329)
                      .+|++++++++|+.||+|||||+||++++++++++||++|++++++|||++|+||+|.+||||+
T Consensus       236 ~aD~~a~~~~gfg~~t~iINGG~EC~~g~~~~~~dRi~~y~r~~~~Lgv~~g~nl~C~~q~~f~  299 (309)
T 2dkv_A          236 PADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPFN  299 (309)
T ss_dssp             HHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHTTCCCCSCCCCTTSCCCC
T ss_pred             hhhhhcccCCChhheeeEEeCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCCcCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999996
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Back     alignment and structure
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A* Back     alignment and structure
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media} Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A* Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Back     alignment and structure
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 1e-121
d1dxja_242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 1e-120
d1en2a145 g.3.1.1 (A:1-45) Isolectin VI {Stinging nettle (Ur 3e-17
d1uhaa142 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phyt 2e-16
d1ulka241 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phy 1e-15
d1uhaa240 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phy 2e-15
d1q9ba_43 g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 39 2e-15
d9wgaa152 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Whea 5e-14
d9wgaa343 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wh 6e-14
d9wgaa442 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {W 8e-13
d1en2a241 g.3.1.1 (A:46-86) Isolectin VI {Stinging nettle (U 2e-12
d9wgaa234 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Whe 1e-08
d1mmca_30 g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tas 4e-04
d1p9ga_41 g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tr 9e-04
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  347 bits (891), Expect = e-121
 Identities = 173/242 (71%), Positives = 198/242 (81%)

Query: 86  NIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAF 145
           ++ S++SR  F+++L HRND ACQ KGFYTYDAF+AAA +F  FGTTG  D +KRE+AAF
Sbjct: 1   SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 60

Query: 146 LAQTSHETTGGWPTAPDGPYAWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQIS 205
           LAQTSHETTGGW TAPDG +AWGYCFKQE+G   DYC PS QWPCAPGK+Y+GRGPIQ+S
Sbjct: 61  LAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLS 120

Query: 206 YNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMTPQSPKPSCHDVITGQWKPSA 265
           +NYNYGPAG+AI VDLL NPD VA D T+ FKTA WFWMT Q PKPS H VI GQW PS 
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSG 180

Query: 266 SDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQR 325
           +D  AGR+PG+GV+TNIINGGIECG G +    DRIGFYKRYCDIL V YGNNLDC +QR
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQR 240

Query: 326 PF 327
           PF
Sbjct: 241 PF 242
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 42 Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 41 Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Length = 40 Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Length = 43 Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 52 Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 43 Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 42 Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Length = 34 Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Length = 30 Back     information, alignment and structure
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d2baaa_243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
d1uhaa142 Lectin-D {American pokeweed (Phytolacca americana) 99.44
d1en2a145 Isolectin VI {Stinging nettle (Urtica dioica), UDA 99.39
d1uhaa240 Lectin-D {American pokeweed (Phytolacca americana) 99.36
d1ulka241 Lectin-C {American pokeweed (Phytolacca americana) 99.35
d1q9ba_43 Hevein {Hevea brasiliensis [TaxId: 3981]} 99.34
d9wgaa343 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.29
d9wgaa152 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.27
d1en2a241 Isolectin VI {Stinging nettle (Urtica dioica), UDA 99.21
d9wgaa442 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.21
d9wgaa234 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 99.2
d1mmca_30 Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranth 98.54
d1p9ga_41 Antifungal peptide 2 {Hardy rubber tree (Eucommia 97.99
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.8e-85  Score=606.79  Aligned_cols=243  Identities=71%  Similarity=1.349  Sum_probs=238.5

Q ss_pred             CcccccchHHHHHHHhhcccccccCCCcccHHHHHHHHHhhhhccCCCCcccchhHHHHhhhccccccCCCCCCCCCCCC
Q 020187           86 NIGSLISRDLFEQLLKHRNDAACQGKGFYTYDAFIAAAKSFGAFGTTGDTDTRKREIAAFLAQTSHETTGGWPTAPDGPY  165 (329)
Q Consensus        86 ~v~~ivT~~~F~~ifp~~~~~~c~g~gfyty~~fi~A~~~f~~F~~~G~~~t~~re~AaFLAq~~hETg~g~~~~~~~~~  165 (329)
                      +|++|||+++|++|||||++..||+++||||++||+|+++||+|+++|+.+++||||||||||++|||+++|..+|+++|
T Consensus         1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~~~   80 (243)
T d2baaa_           1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAF   80 (243)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTSTTTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTCGG
T ss_pred             CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhchhhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCCch
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCCCCCCccCCCCCCCCCCCccccCCcccccchhhHHHHHhhhCCCCCCCccccccCchhhhhhhhhhhhc
Q 020187          166 AWGYCFKQEQGNPGDYCQPSQQWPCAPGKKYFGRGPIQISYNYNYGPAGKAINVDLLGNPDAVANDPTISFKTAFWFWMT  245 (329)
Q Consensus       166 ~wg~~~~~E~~~~~~Yc~~~~~~p~~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~nPdlva~dp~~a~~sA~wfW~~  245 (329)
                      +|||++.+|.+....||+.+.+|||+||++|||||+||||||+||++|++++++||++|||+|++||++||++|+||||+
T Consensus        81 ~~g~~~~~e~~~~~~yc~~~~~~pc~~G~~Y~GRG~iQLT~~~NY~~~g~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~t  160 (243)
T d2baaa_          81 AWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMT  160 (243)
T ss_dssp             GCTTCCSBCCSCCCCCCCCCSSSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHHHC
T ss_pred             hhcccchhccCCccccccCCCCCCCCCCCcccCCCcccccchhhHHHHHHHhCCCccccccceeeccHHHHHHHHHHHhc
Confidence            99999999999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCCccccccCCCCCccchhheeeCCccCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCC
Q 020187          246 PQSPKPSCHDVITGQWKPSASDTQAGRLPGYGVVTNIINGGIECGKGSNPNAEDRIGFYKRYCDILKVSYGNNLDCNNQR  325 (329)
Q Consensus       246 ~~~~~ps~hd~i~g~w~p~~~d~~a~~~~~fg~~t~iINGg~eC~~~~~~~~~~R~~~y~~~~~~Lgv~~g~nl~c~~~~  325 (329)
                      ++.++|++|++|+|+|+|+.+|.++++.++|+.||+|||||+||++++++++++||++|+++|++|||++|+||+|.+|+
T Consensus       161 ~~~~~~s~~~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~ec~~~~~~~~~dRi~~Y~~~~~~lgv~~g~nl~C~~q~  240 (243)
T d2baaa_         161 AQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQR  240 (243)
T ss_dssp             CCTTSCCHHHHHTTCCCCCHHHHHTTCCSSHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCCCTTSC
T ss_pred             CCCCCccHHHHHhccCCcccchhhhccCCCcceEEEEEECcccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCcCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 020187          326 PFN  328 (329)
Q Consensus       326 ~f~  328 (329)
                      ||.
T Consensus       241 ~f~  243 (243)
T d2baaa_         241 PFA  243 (243)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            995
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]} Back     information, alignment and structure