Citrus Sinensis ID: 020194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEV
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccHHHHcccccccccccccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccEcccHHHHHHHHHHHcccccccccccEEcccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHHcccHHccccccccccccccccEEEEEcccccEEEEEEEcccccccEEHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDDEYAKLIrrmnpprvvidnntcadaTVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYissdggwfmdvfnvidcdgkkirDKEVIDYIQQRLetdasfapslrssvgvmpteehtsieftgtdrpglfSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVtdhstgyaikdpkRLSTIKELLFNVLRGYDDfrkaktslsppgimnreRRLHQIMFDDRDYERVEKAVGrvedkssrpqvtvlnIEKDYTVItmrskdrpkLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHvdglpisseAERERVIQCLEAAIERRASEV
Flexible Loop (DISEMBL)
MDDEYAKlirrmnpprvvidnnTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYissdggwfmDVFNVIDCDGKKIRDKEVIDYIQQRletdasfapslrSSVGVMPTEEHTSieftgtdrpGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHstgyaikdpkrlsTIKELLFNVLRGYDDfrkaktslsppgimnrerrLHQIMFDDRDYERVEKavgrvedkssrpqvtvlniekdytvitmrskdrpKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEV
Low Complexity Region (SEG)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEV
Disordered region (IsUnstruct)
********IRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD********************SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRK****************LHQIMFDD*********************VTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA*********
Disordered Region (DISOPRED)
*DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR*********************MF******************SSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR****
Disordered Region (DISEMBL)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEV
Disordered Region (DISPRO)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYER***********SSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.595	0.209	0.269	6e-12
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.586	0.203	0.255	4e-10
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.155	0.054	0.382	2e-07
Q87MD6	874	[Protein-PII] uridylyltra	yes	no	0.495	0.186	0.278	2e-07
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.240	0.083	0.361	3e-07
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.243	0.085	0.382	4e-07
Q3J5H6	930	[Protein-PII] uridylyltra	yes	no	0.553	0.195	0.255	4e-07
Q89VX9	929	[Protein-PII] uridylyltra	yes	no	0.234	0.082	0.384	4e-07
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.227	0.080	0.381	5e-07
A4YKP3	931	[Protein-PII] uridylyltra	yes	no	0.340	0.120	0.309	5e-07

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 27/223 (12%)

Query: 103 SLRSSVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 160
            L  +V V+P  E   + +     D PGLFS++   +A    N+++A+I T +D  A  +
Sbjct: 711 GLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDI 770

Query: 161 HVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 220
                  G+AI+  +R++ + + + +VL G     KA     PP +  R R L       
Sbjct: 771 FTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRR-QPPRLPERTRHL------- 822

Query: 221 RDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
                           +  P+V V N   K +TVI +  +DRP  L+ +   LTD+   +
Sbjct: 823 ----------------TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQI 866

Query: 280 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322
               V+T        FY++ V G+ I   A+  ++ + LEAAI
Sbjct: 867 SSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAI 909

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 26/219 (11%)

Query: 107 SVGVMPTEEHTSIEFT--GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
           +V   P  E    E T    D PGLFS++   LA    ++V+A I T +D  A       
Sbjct: 744 TVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQ 803

Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE 224
              G + ++P +L  +  L+   L G  D RK     S      R R +H          
Sbjct: 804 DGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIH---------- 853

Query: 225 RVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGM 283
                          P+V + N   D +TVI +  +DRP LL D+   L+     +    
Sbjct: 854 -------------VPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAH 900

Query: 284 VNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322
           + T    A   FY+R + G+ I+      R+ + L A++
Sbjct: 901 ITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV+IDNN     TVI+V+  ++ G+L  + + L ++ L I  A IS+ G   +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 74  IDCDGKKIRDKEVIDYIQQRL 94
            D  G K+  +  +  I++RL
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 6   AKLIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SS 62
           A L+R  +P  P V+I        T + V + ++  +   V+  L+  N  +  A I +S
Sbjct: 668 AHLLRMDDPNKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTS 727

Query: 63  DGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLET------DASFAPS------LRSS 107
             G  +D F V+D  G+ I   R   VI ++   LE            P+      +++ 
Sbjct: 728 KDGHVIDTFMVLDQHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTK 787

Query: 108 VGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 165
           V  +PT+  +HT +EF   D PGL ++V    ADL+ N+  A+I T  +RA  +  +T  
Sbjct: 788 VDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSE 847

Query: 166 STG 168
           + G
Sbjct: 848 AGG 850

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Vibrio parahaemolyticus (taxid: 670)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PP V+I N+     TVI+V+ +++ G+L ++  VL+D++L I+ A I++ G   +D F V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884

Query: 74  IDCDGKKIRDKEVIDYIQQRLET 96
            D  G+KI ++    YI  RL+ 
Sbjct: 885 ADLVGQKISNENRRAYITARLKA 907

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           IE  G DRPGL SE+   L+DL  ++ +A I T  ++     +VTD  TG  I  P R++
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPARIA 907

Query: 179 TIKELLFNVLRGYDDFRKAKT 199
           TI+  L   L G    R  K 
Sbjct: 908 TIRNRLMATLEGIAPERGGKA 928

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glnD PE=3 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 33/215 (15%)

Query: 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG--Y 169
           P  + T   F   D PG+FS +   LA +  NVV+A  +T  D  A  V     S G  Y
Sbjct: 736 PDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSEGSPY 795

Query: 170 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA 229
            I    RL  +  ++   L+G    R+A                      DRD  +  +A
Sbjct: 796 EI---SRLPRLTSMIDKTLKGEVVAREA--------------------LKDRDKLKKREA 832

Query: 230 VGRVEDKSSRPQVTVLNIEKD--YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287
             R       P     + E    YT+I + ++DRP LL+D+  TL      +   ++ T 
Sbjct: 833 QFRF------PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY 886

Query: 288 RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322
             +    FY++ + GL +  +  +E + + L  AI
Sbjct: 887 GAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQAI 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=glnD PE=3 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
           ++ +T IE +G DRPGL  E+   ++ L+ N+ +A + T  +RA  V +VTD   G  I 
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIN 903

Query: 173 DPKRLSTIKELLFNVLRG 190
            P R S IK  L +V+ G
Sbjct: 904 APTRQSAIKSALTHVMAG 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
           ++ HT IE +G DRPGL  ++ A ++ L+ N+ +A + T  +RA  V +VTD   G  I 
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 904

Query: 173 DPKRLSTIKELLFNVL 188
            P R + IK  L ++L
Sbjct: 905 APTRQAAIKRALIHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glnD PE=3 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 80  KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
           K+R  + +     R +   +F+     S+    +E +T IE +G DRPGL  E+   ++ 
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872

Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192
           L+ N+ +A + T  +RA  V +VTD   G  I  P R + IK  L ++L   D
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLLASED 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
255543679	443	amino acid binding protein, putative [Ri	0.996	0.740	0.848	1e-163
224143611	439	predicted protein [Populus trichocarpa]	0.996	0.747	0.829	1e-161
224055763	441	predicted protein [Populus trichocarpa]	0.996	0.743	0.824	1e-160
225451503	440	PREDICTED: uncharacterized protein LOC10	0.990	0.740	0.796	1e-151
356561659	445	PREDICTED: uncharacterized protein LOC10	0.996	0.737	0.780	1e-149
356571573	445	PREDICTED: uncharacterized protein LOC10	0.993	0.734	0.774	1e-146
357503685	442	Amino acid binding protein, putative [Me	0.996	0.742	0.778	1e-145
449490057	440	PREDICTED: uncharacterized protein LOC10	0.990	0.740	0.741	1e-141
15232835	433	ACT domain-containing protein 6 [Arabido	0.978	0.743	0.768	1e-141
297832736	442	hypothetical protein ARALYDRAFT_477311 [	0.978	0.728	0.762	1e-140

>gi|255543679|ref|XP_002512902.1| amino acid binding protein, putative [Ricinus communis] gi|223547913|gb|EEF49405.1| amino acid binding protein, putative [Ricinus communis]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/330 (84%), Positives = 303/330 (91%), Gaps = 2/330 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDN+ C DATVI+VDSVNKHGILLQV+QVL D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDVCEDATVIQVDSVNKHGILLQVVQVLTDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVID DG KIRDKEVI YIQ+RLE++ASFAPSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVIDQDGNKIRDKEVIGYIQRRLESNASFAPSLRGSVGVMPSEDHTSIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +G DRPGL SEVCAVLADL CNVVNAEIWTHN RAAAVVHVTD STG A+KDPKRLSTI
Sbjct: 121 LSGNDRPGLLSEVCAVLADLRCNVVNAEIWTHNARAAAVVHVTDDSTGCAVKDPKRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK-AVGRVEDKSSR 239
           KELL NVL+G +D + AK +LSPPGI +RERRLHQIMF DRDYERV++  +GR+EDKSSR
Sbjct: 181 KELLCNVLKGNNDLKAAKMTLSPPGITSRERRLHQIMFADRDYERVDRVGLGRLEDKSSR 240

Query: 240 PQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIR 298
           P VTVLNIEKDY+VITMRSKDRPKLLFDIVCTLTDM+YVVFHGMVN GR  EAYQEFYIR
Sbjct: 241 PHVTVLNIEKDYSVITMRSKDRPKLLFDIVCTLTDMEYVVFHGMVNAGRKEEAYQEFYIR 300

Query: 299 HVDGLPISSEAERERVIQCLEAAIERRASE 328
           HVDGLPISS+AERERVIQCLEAAIERRASE
Sbjct: 301 HVDGLPISSDAERERVIQCLEAAIERRASE 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143611|ref|XP_002336061.1| predicted protein [Populus trichocarpa] gi|222869846|gb|EEF06977.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/329 (82%), Positives = 304/329 (92%), Gaps = 1/329 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EYAKLIRR+NPPRVVIDN+ C +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNV+D DGKKIRDKEV+DYIQ+RLE++ASFAPSLR SVGVMP+EEHT+IE
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRRLESNASFAPSLRGSVGVMPSEEHTAIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLSTI
Sbjct: 121 LTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           +ELL NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKSSR
Sbjct: 181 RELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSR 240

Query: 240 PQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
           P VTVLNIE+DYTV++MRSKDRPKLLFDIVCTLTDM+YVVFHGMV+TGR EAYQEFYIRH
Sbjct: 241 PHVTVLNIERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYIRH 300

Query: 300 VDGLPISSEAERERVIQCLEAAIERRASE 328
           VDGLP+SS+AERERV+QCLEAAIERRASE
Sbjct: 301 VDGLPVSSDAERERVVQCLEAAIERRASE 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055763|ref|XP_002298641.1| predicted protein [Populus trichocarpa] gi|222845899|gb|EEE83446.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/331 (82%), Positives = 304/331 (91%), Gaps = 3/331 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EYAKLIRR+NPPRVVIDN+ C +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ--RLETDASFAPSLRSSVGVMPTEEHTS 118
           SSDG WFMDVFNV+D DGKKIRDKEV+DYIQ+  RLE++ASFAPSLR SVGVMP+EEHT+
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRVRRLESNASFAPSLRGSVGVMPSEEHTA 120

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           IE TGTDRPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLS
Sbjct: 121 IELTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLS 180

Query: 179 TIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKS 237
           TI+ELL NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKS
Sbjct: 181 TIRELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKS 240

Query: 238 SRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297
           SRP VTVLNIE+DYTV++MRSKDRPKLLFDIVCTLTDM+YVVFHGMV+TGR EAYQEFYI
Sbjct: 241 SRPHVTVLNIERDYTVVSMRSKDRPKLLFDIVCTLTDMEYVVFHGMVSTGRMEAYQEFYI 300

Query: 298 RHVDGLPISSEAERERVIQCLEAAIERRASE 328
           RHVDGLP+SS+AERERV+QCLEAAIERRASE
Sbjct: 301 RHVDGLPVSSDAERERVVQCLEAAIERRASE 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451503|ref|XP_002272024.1| PREDICTED: uncharacterized protein LOC100248040 [Vitis vinifera] gi|296082319|emb|CBI21324.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/330 (79%), Positives = 294/330 (89%), Gaps = 4/330 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDN+   +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDASEEATVIQVDSVNKHGILLEVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNV+D DG KIRDK VI+YI + LE DASF P +R +VGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVVDGDGNKIRDKGVINYITKTLERDASFVPPMRGTVGVMPSEDHTSIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNAEIWTHN RAAAVVHVTD STG AI+DP RLS I
Sbjct: 121 LSGTDRPGLLSEVCAVLADLHCNVVNAEIWTHNARAAAVVHVTDDSTGCAIEDPNRLSKI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           KELL NVL+G +D + AK +LSPPG  +RERRLHQIMF DRDY+RVE+A +G+  DKSSR
Sbjct: 181 KELLCNVLKGNNDLKTAKMTLSPPGFTHRERRLHQIMFADRDYQRVERAELGK--DKSSR 238

Query: 240 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298
           P VTVL+ IEKDYTVITMRSKDRPKLLFD VCTLTDMQYVVFHG+V+TGR EAYQE+YIR
Sbjct: 239 PHVTVLDCIEKDYTVITMRSKDRPKLLFDTVCTLTDMQYVVFHGVVHTGRMEAYQEYYIR 298

Query: 299 HVDGLPISSEAERERVIQCLEAAIERRASE 328
           HVDGLP+SS+AERERVI+CLEAAIERRASE
Sbjct: 299 HVDGLPMSSDAERERVIECLEAAIERRASE 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561659|ref|XP_003549097.1| PREDICTED: uncharacterized protein LOC100818506 [Glycine max]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/332 (78%), Positives = 293/332 (88%), Gaps = 4/332 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSD  WFMDVFNVID +G KIRDKEVIDYIQ+RLE + SFAPSLR SVGV+PTEEHT IE
Sbjct: 61  SSDAVWFMDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSLRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAV-GRVEDKSSR 239
           ++LL NVLRG +D + A+T+LSPPG+ NR+RRLHQIMF DRDYER+E+A  G + D+  R
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDKR 240

Query: 240 --PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFY 296
             P VTV++ +EKDYTV+TMR++DRPKLLFDIVCTLTDMQYVVFHG+V T RTEA+QEFY
Sbjct: 241 PLPHVTVVDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRTEAFQEFY 300

Query: 297 IRHVDGLPISSEAERERVIQCLEAAIERRASE 328
           IRHVDG PISSEAERER++QCLEAAIERRASE
Sbjct: 301 IRHVDGFPISSEAERERLVQCLEAAIERRASE 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571573|ref|XP_003553951.1| PREDICTED: uncharacterized protein LOC100801859 [Glycine max]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/333 (77%), Positives = 289/333 (86%), Gaps = 6/333 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNVID  G KIRDKEVIDYIQ+RLE + SF PSLR SVGV+PTEEHT IE
Sbjct: 61  SSDGVWFMDVFNVIDHKGNKIRDKEVIDYIQRRLENNPSFVPSLRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVE----DK 236
           ++LL NVLRG +D + A+T+LSP G+ NR+RRLHQIMF DRDYER+E+A G+ E    DK
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPHGVTNRDRRLHQIMFADRDYERIERA-GQEELRDRDK 239

Query: 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 295
              P VTV + +EKDYTV+TMR++DRPKLLFDIVCTLTDMQYVVFHG+V T R EA+QEF
Sbjct: 240 RPLPHVTVGDCVEKDYTVVTMRAQDRPKLLFDIVCTLTDMQYVVFHGVVKTLRMEAFQEF 299

Query: 296 YIRHVDGLPISSEAERERVIQCLEAAIERRASE 328
           YIRHVDG PISSEAERER++QCLEAAIERRASE
Sbjct: 300 YIRHVDGFPISSEAERERLMQCLEAAIERRASE 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503685|ref|XP_003622131.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497146|gb|AES78349.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/329 (77%), Positives = 284/329 (86%), Gaps = 1/329 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNV D +G KI+DKEVIDYIQ+RLE + SF  S+R SVGV+PTEEHT IE
Sbjct: 61  SSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVLADL CNVV AEIWTHN RAAAVVHVTD S+G AI+DP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           ++LL NVLRG DD + AKT+LS PG+  R+RRLHQIMF DRDYERVE+A  R  DK   P
Sbjct: 181 RDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFP 240

Query: 241 QVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
            VTV +  E+DYTV+ MR+KDRPKLLFDIVCTLTDMQYVVFHG+V T RT AYQEFYIRH
Sbjct: 241 HVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRH 300

Query: 300 VDGLPISSEAERERVIQCLEAAIERRASE 328
           VDG PISSEAERER+IQCLEAAIERRASE
Sbjct: 301 VDGFPISSEAERERLIQCLEAAIERRASE 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490057|ref|XP_004158495.1| PREDICTED: uncharacterized protein LOC101225681 [Cucumis sativus]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/329 (74%), Positives = 282/329 (85%), Gaps = 3/329 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EY KLIRR+NPPRVVIDNN C DATVI+VDS+NKHGILL+V+QVL D+NL+I KAYI
Sbjct: 1   MDNEYDKLIRRLNPPRVVIDNNACKDATVIQVDSMNKHGILLKVVQVLMDMNLIITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIE 118

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TI
Sbjct: 119 LSGTDRPGLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTI 178

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NVLRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP
Sbjct: 179 KELLCNVLRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRP 238

Query: 241 QVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
            VTV +  EKDYT+IT R++DRPKLLFD++CTLTDM+YVVFHGMV TGR EA+ EFYIRH
Sbjct: 239 HVTVFDCTEKDYTLITTRTRDRPKLLFDVLCTLTDMEYVVFHGMVETGRMEAFLEFYIRH 298

Query: 300 VDGLPISSEAERERVIQCLEAAIERRASE 328
            DGLPISS+AER+RV+ CLEAAIERR SE
Sbjct: 299 KDGLPISSKAERDRVLHCLEAAIERRESE 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232835|ref|NP_186848.1| ACT domain-containing protein 6 [Arabidopsis thaliana] gi|6513932|gb|AAF14836.1|AC011664_18 unknown protein [Arabidopsis thaliana] gi|22138102|gb|AAM93431.1| ACR6 [Arabidopsis thaliana] gi|26451489|dbj|BAC42843.1| unknown protein [Arabidopsis thaliana] gi|28973303|gb|AAO63976.1| unknown protein [Arabidopsis thaliana] gi|332640226|gb|AEE73747.1| ACT domain-containing protein 6 [Arabidopsis thaliana]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/328 (76%), Positives = 279/328 (85%), Gaps = 6/328 (1%)

Query: 2   DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
           DDEYAKLIRRMNPPRVVIDNN   DATVI+VDSVNKHG LL+V+QVL D+NLVIKKAYIS
Sbjct: 3   DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query: 62  SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSLRSSVGVMPTEEHTSIE 120
           SDGGWFMDVF VID DG KIRD +V+DYIQ+R+E++A  F P LRSSVGVMPT+E+TSIE
Sbjct: 63  SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIE 122

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
             GTDRPGL SEV AVL DLHCNVVNAEIWTHN RAAAV+HVTD+ST  AI DP RLSTI
Sbjct: 123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTI 182

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NV+R     R AKT  S     +RERRLHQIMFDDRDYE V++A       +SRP
Sbjct: 183 KELLCNVVRTNSGSRAAKTVFSCSD-THRERRLHQIMFDDRDYEGVKRA----RTSASRP 237

Query: 241 QVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
            VT++NIEKDYTV+TMRSKDRPKL+FD+VCTLTDMQYVVFHGMV+T   EAYQEFYIRHV
Sbjct: 238 SVTLMNIEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHV 297

Query: 301 DGLPISSEAERERVIQCLEAAIERRASE 328
           DGLPI+SEAE+ERVIQCLEAAIERRASE
Sbjct: 298 DGLPINSEAEQERVIQCLEAAIERRASE 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832736|ref|XP_002884250.1| hypothetical protein ARALYDRAFT_477311 [Arabidopsis lyrata subsp. lyrata] gi|297330090|gb|EFH60509.1| hypothetical protein ARALYDRAFT_477311 [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/328 (76%), Positives = 279/328 (85%), Gaps = 6/328 (1%)

Query: 2   DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
           DDEYAKLIRRMNPPRVVIDNN   DATVI+VDSVNKHG LL+V+QVL D+NLVIKKAYIS
Sbjct: 3   DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query: 62  SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSLRSSVGVMPTEEHTSIE 120
           SDGGWFMDVF VID DG KIRD +V+DYIQ+R+E++A  F P LRSSVGVMPT+E+T+IE
Sbjct: 63  SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQRRIESNAGWFIPPLRSSVGVMPTDEYTAIE 122

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
             GTDRPGL SEV AVL DLHCNVVNAEIWTHN RAAAV+HVTD+ T  AI DP RLSTI
Sbjct: 123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNLTNSAITDPIRLSTI 182

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NV+R     R AKT  S     +RERRLHQIMFDDRDYE V++A    +  +SRP
Sbjct: 183 KELLCNVVRTNSGSRAAKTVFSCSD-THRERRLHQIMFDDRDYEGVKRA----KTSASRP 237

Query: 241 QVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
            VT++NIEKDYTV+TMRSKDRPKL+FD+VCTLTDMQYVVFHGMV+T   EAYQEFYIRHV
Sbjct: 238 SVTLMNIEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHV 297

Query: 301 DGLPISSEAERERVIQCLEAAIERRASE 328
           DGLPI+SEAE+ERVIQCLEAAIERRASE
Sbjct: 298 DGLPINSEAEQERVIQCLEAAIERRASE 325

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.978	0.743	0.768	2.8e-128
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.990	0.716	0.639	1.5e-108
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.993	0.717	0.596	4.4e-100
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.954	0.712	0.536	4.3e-86
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.978	0.710	0.534	5.4e-86
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.936	0.685	0.5	1.7e-75
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.583	0.384	0.475	7.6e-74
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.680	0.469	0.430	5.3e-47
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.358	0.406	0.298	4.4e-07
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.234	0.255	0.269	9.3e-07

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 252/328 (76%), Positives = 279/328 (85%)

Query:     2 DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
             DDEYAKLIRRMNPPRVVIDNN   DATVI+VDSVNKHG LL+V+QVL D+NLVIKKAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    62 SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSLRSSVGVMPTEEHTSIE 120
             SDGGWFMDVF VID DG KIRD +V+DYIQ+R+E++A  F P LRSSVGVMPT+E+TSIE
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIE 122

Query:   121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
               GTDRPGL SEV AVL DLHCNVVNAEIWTHN RAAAV+HVTD+ST  AI DP RLSTI
Sbjct:   123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTI 182

Query:   181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
             KELL NV+R     R AKT  S     +RERRLHQIMFDDRDYE V++A       +SRP
Sbjct:   183 KELLCNVVRTNSGSRAAKTVFSCSDT-HRERRLHQIMFDDRDYEGVKRA----RTSASRP 237

Query:   241 QVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
              VT++NIEKDYTV+TMRSKDRPKL+FD+VCTLTDMQYVVFHGMV+T   EAYQEFYIRHV
Sbjct:   238 SVTLMNIEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHV 297

Query:   301 DGLPISSEAERERVIQCLEAAIERRASE 328
             DGLPI+SEAE+ERVIQCLEAAIERRASE
Sbjct:   298 DGLPINSEAEQERVIQCLEAAIERRASE 325

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 211/330 (63%), Positives = 263/330 (79%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             MD+EY KLIRRMNPPRVVIDN++C  ATVI+VDS N++GILL+V+Q+L D+NL I KAYI
Sbjct:    11 MDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYI 70

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
             SSDGGWFMDVFNV D DG K+ D+ V+DYIQ+ L  +A F+ S+RS VGV+P+ + T IE
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-VGVIPSTDSTVIE 129

Query:   121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
              TG DRPGL SE+ AVL  L C+V+NAEIWTHN RAAAV+ VTD  TG  I DP+RLS I
Sbjct:   130 LTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRI 189

Query:   181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE-RVEKAVGRVEDKSSR 239
             K LL NVL+G +  R+AKT +S  G ++ +RRLHQ+MF+DRDYE R+      ++D+  R
Sbjct:   190 KNLLRNVLKGSNTPREAKTVVSH-GEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQR 248

Query:   240 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298
             P V V N ++KDY+V+T+R KDRPKLLFD VCTLTDMQYVVFHG V+T  TEA+QE+Y+R
Sbjct:   249 PDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVR 308

Query:   299 HVDGLPISSEAERERVIQCLEAAIERRASE 328
             H+DG P+ SEAE++RVIQCLEAAI+RR SE
Sbjct:   309 HIDGSPVKSEAEKQRVIQCLEAAIKRRVSE 338

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 201/337 (59%), Positives = 250/337 (74%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             MDDE AK IRR+NPPRVVIDN  C D TVIKVDS NKHGILL+V+QVL ++NL IKKAYI
Sbjct:    11 MDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYI 70

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS--FAPSLRSSVGVMPTEEHTS 118
             SSDGGWFMDVFNV D DG K+ D+ V++YI++ L  D S  F+PS+RS++GV  + ++T 
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTV 130

Query:   119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
             +E TGTDRPGL SE+CAVL DL CNVVNAEIWTH  +AAAV+ VTD  T  AI DP+RLS
Sbjct:   131 VELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLS 190

Query:   179 TIKELLFNVLRGYDD---FRKAKTSLSPP-GIMNRERRLHQIMFDDRDYERVEKAVGRVE 234
              I++LL  VL G      FR+ KT++S      + +R+LHQ+MF DRDY+  E  V   E
Sbjct:   191 KIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDD-E 249

Query:   235 DKSSR--PQVTVLNI-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEA 291
             DK  R  P V V N+ + DY+++ ++ KDRPKLLFD V TLTDM YVV H  ++    +A
Sbjct:   250 DKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQA 309

Query:   292 YQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 328
             YQE+YIRH DG P+ SEAER+RVI+CL+AAI+RR SE
Sbjct:   310 YQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSE 346

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 176/328 (53%), Positives = 235/328 (71%)

Query:     3 DEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62
             DEY KL+ RMN PRVVIDN  C+ AT++KVDS  ++GILL+ +Q+L D+NL IKKAYISS
Sbjct:     8 DEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISS 67

Query:    63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
             DG W MDVF+V D +G K+ D+ V+ YI+Q +ET   +  ++  + G+      T++E T
Sbjct:    68 DGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIET-VYYGENIEVN-GL------TALELT 119

Query:   123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
             GTDR GL SE+ AVL+DL+C+VV+A++WTHN R A+V+++ D  +G  I D  R+S I+ 
Sbjct:   120 GTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEG 179

Query:   183 LLFNVLRGYDDFRKA-KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQ 241
              L NVL G +D   A KT ++   +M+ ERRLHQ+MF+DRDYER  K      ++S    
Sbjct:   180 RLKNVLNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKK----HERSPMVV 235

Query:   242 VTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
             VTV N  E+ Y+V+ +  +DR KLLFD+VCTLTDM+Y VFH  +NT   +A+ EFYIRH 
Sbjct:   236 VTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHK 295

Query:   301 DGLPISSEAERERVIQCLEAAIERRASE 328
             DG PISSEAER+RVIQCLEAA+ERRA E
Sbjct:   296 DGSPISSEAERQRVIQCLEAAVERRALE 323

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 180/337 (53%), Positives = 237/337 (70%)

Query:     2 DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
             D EY  L  R+NPP V IDN +C + T++KVDS+NK GILL+V+QVL D++L I KAYIS
Sbjct:    10 DPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYIS 69

Query:    62 SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS----SVGVMPTEEHT 117
             SDGGWFMDVF+V D  G K+ D + IDYI++ L      + S  +     VGV    +HT
Sbjct:    70 SDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHT 129

Query:   118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 177
             SIE    DRPGL SEV AVLADL+ NVV AE WTHN R A V++V D++T  A+ DP+RL
Sbjct:   130 SIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERL 189

Query:   178 STIKELLFNVLRGYD--DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVED 235
             S+++E L NVLRG +  D + A+TSLS  G  + +RRLHQ+ F DRDYE    AV +++D
Sbjct:   190 SSMEEQLNNVLRGCEEQDEKFARTSLSI-GSTHVDRRLHQMFFADRDYE----AVTKLDD 244

Query:   236 KSS---RPQVTVLNIE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEA 291
              +S    P++TV + E K Y+VI +  +DRPKL+FDIVCTLTDMQY+VFH  +++  + A
Sbjct:   245 SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHA 304

Query:   292 YQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 328
              QE++IRH DG  + +E E+ERV++CLEAAI RR SE
Sbjct:   305 SQEYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSE 341

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 163/326 (50%), Positives = 221/326 (67%)

Query:     3 DEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62
             +EY KL+ RMN PRVVIDN  C ++TV+K+DS    GILL+ +Q+L D+NL IKKAYISS
Sbjct:     8 NEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISS 67

Query:    63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
             DG W MDVF+V D +G K+ D+ +I YI++ +ET  S         G+      T++E T
Sbjct:    68 DGKWNMDVFHVSDLNGDKLTDENLIRYIEKSIET--SHYCKTEGYTGL------TALELT 119

Query:   123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK-DPKRLSTIK 181
             GTDR GL SEV AVLADL C+VV A+ WTHN R A++++V D ++G  I  D  R+  ++
Sbjct:   120 GTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVE 179

Query:   182 ELLFNVLRGYDDFRK-AKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
               L N+L+  D ++   +T +S  G  + ERRLHQ MF DRDYE+      + + + S P
Sbjct:   180 GQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEK------KFDIEKS-P 232

Query:   241 QVTVLNIEK-DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH 299
              V+V N+ K  Y+V+ ++ KDR KLLFD+VCTLTDM Y+VFH  + T    A+ EFY+RH
Sbjct:   233 IVSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRH 292

Query:   300 VDGLPISSEAERERVIQCLEAAIERR 325
              DG P+SSE ER+R+IQCL+AAIERR
Sbjct:   293 SDGHPVSSEPERQRLIQCLQAAIERR 318

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 96/202 (47%), Positives = 136/202 (67%)

Query:     2 DDEYAKLIRRM-NPP-RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAY 59
             D ++  L  R+  PP RV IDN++  D TV+KV+S NK G+LL+V+Q+L D+NL+I K+Y
Sbjct:    10 DPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTDMNLIITKSY 69

Query:    60 ISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET---DASFAPSLRSSVGVMPTE-- 114
             ISSDGGWFMDVF+V D  G K+ DK VI++I+  + T   ++ F  +  ++   +  +  
Sbjct:    70 ISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRRESDFIKASEANNNSLEPQLA 129

Query:   115 ---EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI 171
                EHT+IE TGTDRPGLFSE+ A  ADLHCNV+ A  W+HN R A + +V+D +T   I
Sbjct:   130 DHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAYVSDDNTHTPI 189

Query:   172 KDPKRLSTIKELLFNVLRGYDD 193
              DP RL++I++ L  V+R   D
Sbjct:   190 DDPSRLASIEDHLSTVIRATAD 211

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 103/239 (43%), Positives = 148/239 (61%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             +D E   L+ R+NPPRV +DN++  + T+IKVDS NK+GILL ++QVL D++LVI K YI
Sbjct:    10 IDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYI 69

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL--ETDASFAPSLRSSVG--VMP---T 113
             SSDG WFMDVF+V D  G K+ D+ +I YIQQ +           ++S++   V     +
Sbjct:    70 SSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKREVQQRHVS 129

Query:   114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
              EHT+ E TG +RPGL SE+ AVL+D+ C+V  A  WTH++RAA V+++ D   G  I D
Sbjct:   130 TEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPIID 189

Query:   174 PKRLSTIKELLFNVLRGYD---DF-----RKAKTSLSPPGIMNRERRLHQIMFDDRDYE 224
             P R + +K+ L  V+  +    D      R  +    P G  + ERRLH++M+ + DYE
Sbjct:   190 PIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYE 248

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 40/134 (29%), Positives = 68/134 (50%)

Query:    15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
             P V+ID ++  DATV++V   ++ G LL  +  L ++ L + KA +  D     + F + 
Sbjct:    84 PVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143

Query:    75 DCD-GKKIRDKEVIDYIQ-----QRLE--TDASFAPSLRSSVGVMPTEE--------HTS 118
               D G+K+ D E+++ I+       LE   ++S   ++ ++ GV+P  E        H +
Sbjct:   144 RADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPIDVDIATHIT 203

Query:   119 IEFTGTDRPGLFSE 132
             IE  G DR  LF E
Sbjct:   204 IEDDGPDRSLLFIE 217

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
 Identities = 21/78 (26%), Positives = 46/78 (58%)

Query:    15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
             P V+ID +   +AT++++   N+ G L+  ++ L D+ L + K  +S++G      F++ 
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    75 DCD-GKKIRDKEVIDYIQ 91
               D G+K+ D ++++ I+
Sbjct:   155 KRDTGRKVEDPDLLEQIR 172

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	1e-37
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	9e-35
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	2e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	1e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-17
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	5e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	8e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-11
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	6e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	7e-10
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-09
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	8e-08
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-07
pfam01842	66	pfam01842, ACT, ACT domain	2e-06
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	3e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	8e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-05
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	2e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	3e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-05
pfam13740	76	pfam13740, ACT_6, ACT domain	3e-04
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	4e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	4e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	4e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	5e-04
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	6e-04
cd04928	68	cd04928, ACT_TyrKc, Uncharacterized, N-terminal AC	0.002
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	0.002

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  128 bits (324), Expect = 1e-37
 Identities = 49/75 (65%), Positives = 64/75 (85%)

Query: 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAE 310
           Y+V+T++ +DRPKLLFD+VCTLTDM YVVFH  ++T   +A+QE+YIRH DG  +S+E E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 311 RERVIQCLEAAIERR 325
           R+RVI+CLEAAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  120 bits (304), Expect = 9e-35
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T+IE TGTDRPGL SEV AVLADLHCNVV A  WTHN R A V++V D  TG  I DP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 177 LSTIKELLFNVLRG 190
           L++I++ L NVLRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  109 bits (274), Expect = 2e-30
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV 86
           T++KVDS  K GILL+ +QVL D++L I KAYISSDGGWFMDVF+V D  G K+ D  +
Sbjct: 1  CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 87 IDYIQQRLETDA 98
          I YI++ L T  
Sbjct: 61 IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 81.3 bits (202), Expect = 1e-19
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T +E T  DRPGL ++V  VLA+L  N+ +A+I T  +RA  V +VTD + G  + DP+R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPER 58

Query: 177 LSTIKELLFNVL 188
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 73.4 bits (181), Expect = 9e-17
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T +E    DRPGL +++  VLADL  N+ +A I T  +RA  V +VTD S G  + DP+R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPER 58

Query: 177 LSTIKELLFNVL 188
           ++ ++E L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 72.6 bits (179), Expect = 5e-14
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 29/236 (12%)

Query: 95  ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154
           + D +  P L + V   P    T +     D PGLFS +    A    N+V+A I+T  D
Sbjct: 712 DADDAGRP-LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD 770

Query: 155 -RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRL 213
            RA     + D + G    +P+RL+ + + + + L G                   E RL
Sbjct: 771 GRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALSG-------------------EVRL 810

Query: 214 HQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTL 272
            + +   R   +       V      P+VT+ N     +TVI +  +DRP LL+D+   L
Sbjct: 811 PEAL-AKRTKPKKRARAFHVP-----PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL 864

Query: 273 TDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 328
           +D+   +    + T    A   FY+  + GL I++EA +  + + L AA+    +E
Sbjct: 865 SDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAE 920

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 65.3 bits (160), Expect = 8e-14
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER 311
           TV+ + + DRP LL DI   L D+   +    ++T    A   FY+   DG P+  E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 312 ERVIQCLEAAI 322
            R+ + LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI 87
          TV++V + ++ G+L  + +VL D+ L I  A IS+ G   +DVF V D DG+ + D E I
Sbjct: 1  TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 88 DYIQQRLET 96
            +++ LE 
Sbjct: 60 ARLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
              T IE  G DRPGL  ++   L+DL+ N+ +A I T+ +RA  V +VTD   G  I +
Sbjct: 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITN 899

Query: 174 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGI 206
             R + I+  L   L   +   +A+ +  P  +
Sbjct: 900 EARQAAIRRALLAALAEGEA--EARAARPPGAV 930

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
           D+PGLF++V   LA L  +V +A++ T  D  A    V     G      +    + + L
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGL 736

Query: 185 FNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTV 244
            +VL G      AK   +      R RRL                          P+VT+
Sbjct: 737 VDVLAG-----LAKDPDTISARRARRRRLQHFAV--------------------PPRVTI 771

Query: 245 LN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGL 303
           LN   +  T++ +R+ DRP LL  +  TL ++   +    + T   +A   FY+  + GL
Sbjct: 772 LNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL 831

Query: 304 PISSEAERERVIQCLEAAIE 323
            ++ E E +R+++ L A++ 
Sbjct: 832 KLTDE-EEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%)

Query: 52  NLVIKKAYISSDGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPSLRS-- 106
           ++V  + + + DG + +D F V++ DG  +   R   +   + + L       P  R   
Sbjct: 711 SIVDAQIFTTRDG-YALDTFIVLEPDGFPVEEDRRAALRGELIEAL-LSGKAQPPRRRRI 768

Query: 107 -----------SVGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153
                       V ++PT   + T +E    DRPGL + +  V ADL  ++ +A+I T  
Sbjct: 769 PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828

Query: 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
           +R   V  VTD + G A+    R S ++ LL
Sbjct: 829 ERVEDVFIVTD-ADGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 22/172 (12%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
           P  +ID    +  T + + + ++ G+  +V   L  ++L +  A + ++  G  +D F V
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVV 715

Query: 74  IDCDGKKIRD-------KEVIDYIQQRLETDASFAPSLRS------------SVGVMPT- 113
            D  G             + +  +   L  D     + R+             V ++ T 
Sbjct: 716 QDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTA 775

Query: 114 -EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
             + T +E    DRPGL + V   L +L  ++ +A+I T  ++A  V +VTD
Sbjct: 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKEL 183
           DRPGLF+ +   L  L  N+++A I+T  D  A     V D   G  I + +RL+ I+E 
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREA 68

Query: 184 LFNVL 188
           L + L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 53.7 bits (130), Expect = 8e-08
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV IDN      TVI+V+  ++ G+L  + + L+D+NL I  A+I++ G   +DVF V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 74  IDCDGKKIRDKEVIDYIQQRL 94
            D  G KI ++     I++ L
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 33/216 (15%)

Query: 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTG 168
           V P    T +     DRP LF+ VCA L+    ++V+A+I+T  +  A     V +   G
Sbjct: 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDG 736

Query: 169 YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK 228
           + +++ +R +   EL+  +L G       K        + R+ R   I            
Sbjct: 737 FPVEEDRRAALRGELIEALLSG-------KAQPPRRRRIPRKLRHFPI------------ 777

Query: 229 AVGRVEDKSSRPQVTVLNIE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287
                      P+VT+L     D TV+ +R+ DRP LL  +     D+   +    + T 
Sbjct: 778 ----------PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827

Query: 288 RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323
                  F +   DG  +++E  R+ ++Q L  A+ 
Sbjct: 828 GERVEDVFIVTDADGQALNAE-LRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA--VVHVTDHS 166
           T +E    DRPGL +EV   LAD   N+ +    T  D+A    +V V D  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEE 52

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV I N     AT+++V ++++ G+L +V + L ++ L I+ A I++ G    DVF V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 74  IDCDGKKIRDKEVIDYIQQRLETD 97
            D  G K+ D+E     +QRL   
Sbjct: 826 TDLFGLKLTDEE-----EQRLLEV 844

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 27  ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDK- 84
            T I + + ++H      +  ++ +NL I  A I +S   + +D + V+D DG+ I D  
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 85  EVIDYIQQRLETDASFAPSLRSSVG----------VMPTE---------EHTSIEFTGTD 125
             I+ I++ L           + +             PT+           T +E    D
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPD 823

Query: 126 RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
           RPGL + +  +  +   ++ NA+I T  +R   V  +TD +    + DP+  S +++
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQD 879

Length = 895

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           +  +G DRPGL ++V +VLA+   N+ + E  T  D   A + + 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 3   DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
           D+Y  +I+R  P          +V I N+     TV+++ + ++ G+L ++ ++  + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 54  VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
            ++ A I++ G    DVF + D D + + D ++   +Q  +
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
           P V++        T I + S ++  +   V   L+  NL +  A I +S  G  MD F V
Sbjct: 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIV 748

Query: 74  IDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR------------SSVGVMPTEEH-- 116
           ++ DG  +   R + +   ++Q L   +   P  R            + V  +PT     
Sbjct: 749 LEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRR 808

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156
           + +E    D+PGL + V  + ADL  ++  A I T  +R 
Sbjct: 809 SYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERV 848

Length = 884

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
             V I N      T I +   ++  + L+V+  +    L I  A I +S  G+ +D F V
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724

Query: 74  IDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR-----------SSVGVMPTE--EHT 117
            + +GK +   R +++   + + L T+     +L            + V  +  E  E T
Sbjct: 725 TELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQT 784

Query: 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156
            +E    DR GL ++V  V ++L+ N++NA+I T  ++A
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKA 823

Length = 854

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV I      D TV++V ++++ G+L  +  V  D+ L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 74  IDCDGKKIRDKEVIDYIQQRLET 96
            D DG+ +  +     +Q+ LE 
Sbjct: 838 TDADGQALNAELRQSLLQRLLEA 860

Length = 867

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           I  TG DRPGL + +  VLA+  CN++++            + V+
Sbjct: 5   ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI 87
          TV+++ ++++ G+L  V +VL ++ L I  A I++ G    DVF V D DG+   D E  
Sbjct: 1  TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQ 59

Query: 88 DYIQQRLET 96
          + ++  L  
Sbjct: 60 EALRAALGE 68

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 36 NKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
          ++ G+  ++   L+ + L I  A I ++  G+ +D F V+D DG+ I ++E +  I++ L
Sbjct: 10 DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

Query: 95 E 95
          E
Sbjct: 70 E 70

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 37/200 (18%)

Query: 125 DRPGLFSEVCAVLADLH-CNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKEL 183
           DR GL S+   VLA LH   V +A + +H+  A     V+    G    D   L      
Sbjct: 608 DRRGLLSKAAGVLA-LHRLRVRSASVRSHDGVAVLEFVVSPRF-GSPP-DAALLR----- 659

Query: 184 LFNVLRGYDDFRKAKT-SLSPPGIMNR-ERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQ 241
                    D R+A    L    ++ R   R       +     V      V   ++ P+
Sbjct: 660 --------QDLRRALDGDLD---VLARLAAR-------EAAAAAV-----PVRRPAAPPR 696

Query: 242 VTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV 300
           V  L+    D TV+ +R+ DRP LL  +   L      V    V T   +    FY+   
Sbjct: 697 VLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA 756

Query: 301 DGLPISSEAERERVIQCLEA 320
            G P++    R  V Q + A
Sbjct: 757 AGGPLA--DARAAVEQAVLA 774

Length = 774

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 177
            +E    DR GL S+V  V  +    V  AEI T  D A  V +VTD + G  + DPK +
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTI 60

Query: 178 STIKE 182
             +++
Sbjct: 61  EAVRQ 65

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 41/204 (20%)

Query: 115 EHTSIEFTG--------TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHS 166
           E T  EF G         D+   F+   A +  L+ N+ +A I T + +     ++    
Sbjct: 695 ETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754

Query: 167 TGYAIKD-PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDY 223
            G  I D P R+  I+E L   LR  DD+         P I+ R   R+L    F     
Sbjct: 755 DGEPIGDNPARIEQIREGLTEALRNPDDY---------PTIIQRRVPRQLKHFAFP---- 801

Query: 224 ERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 282
                            QVT+ N  ++  TV+ + + DRP LL  I     +    + + 
Sbjct: 802 ----------------TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA 845

Query: 283 MVNTGRTEAYQEFYIRHVDGLPIS 306
            + T        F+I   D  P+S
Sbjct: 846 KIATLGERVEDVFFITDADNQPLS 869

Length = 895

>gnl|CDD|153200 cd04928, ACT_TyrKc, Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVI 74
          I   + +K  +L Q+  +L D+ L I +A+  S+D G  +D+F V 
Sbjct: 4  ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 68

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 44/168 (26%), Positives = 64/168 (38%), Gaps = 25/168 (14%)

Query: 16  RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVI 74
           R V DN    DA  + V S ++ G+   ++  L+     I +A +  +      DVF V+
Sbjct: 683 RAVPDN----DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL 738

Query: 75  DCDGKKIRDKEVID-YIQQRLETDAS-----------------FAPSLRSSVGVMPTEEH 116
             D     D + +   ++Q L  D                   FAP  R           
Sbjct: 739 PQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAP--RVEFSESAGGRR 796

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
           T I     DRPGL ++V  VL   H  V +A I T  +RA     +TD
Sbjct: 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD 844

Length = 869

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
PRK04374	869	PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05092	931	PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.89
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.89
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.76
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.74
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.7
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.68
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.68
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.66
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.66
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.64
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.62
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.59
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.58
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.5
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.41
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.41
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.39
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.35
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.32
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.32
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.3
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.26
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.09
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.96
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.85
COG4747	142	ACT domain-containing protein [General function pr	98.76
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.63
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.61
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.58
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.53
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.53
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.46
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.45
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.37
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.22
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.12
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.09
PRK00194	90	hypothetical protein; Validated	98.09
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.09
PRK00194	90	hypothetical protein; Validated	98.08
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.06
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.0
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.99
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.97
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.92
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.91
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.74
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.74
COG3830	90	ACT domain-containing protein [Signal transduction	97.72
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.69
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.69
COG4747	142	ACT domain-containing protein [General function pr	97.62
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.62
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.59
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.56
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.53
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.53
PRK07431	587	aspartate kinase; Provisional	97.51
COG3830	90	ACT domain-containing protein [Signal transduction	97.5
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.5
PRK07431	587	aspartate kinase; Provisional	97.36
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.3
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.25
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.22
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.21
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.21
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.2
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.19
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.18
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.17
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.16
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.14
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.14
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.12
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.12
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.11
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.09
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.08
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.06
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.01
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.0
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.98
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.97
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.96
PRK08577	136	hypothetical protein; Provisional	96.95
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.88
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.86
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.85
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.83
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.82
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.79
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.75
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.71
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.7
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.65
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.64
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.63
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.61
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.6
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.56
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.54
PRK08577	136	hypothetical protein; Provisional	96.53
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.51
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.51
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.45
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.38
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.32
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.31
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.3
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.26
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.24
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.2
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.19
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.16
PRK04435	147	hypothetical protein; Provisional	96.15
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	96.12
PRK04435	147	hypothetical protein; Provisional	96.0
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.0
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.99
cd02116	60	ACT ACT domains are commonly involved in specifica	95.97
PRK06635	404	aspartate kinase; Reviewed	95.89
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	95.71
PRK07334	403	threonine dehydratase; Provisional	95.7
cd02116	60	ACT ACT domains are commonly involved in specifica	95.69
PRK07334	403	threonine dehydratase; Provisional	95.69
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.68
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.6
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.45
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.4
PRK08210	403	aspartate kinase I; Reviewed	95.37
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.34
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.12
PRK06291	465	aspartate kinase; Provisional	95.08
PRK06635	404	aspartate kinase; Reviewed	95.04
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.95
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.91
PRK09034	454	aspartate kinase; Reviewed	94.88
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.85
COG1707	218	ACT domain-containing protein [General function pr	94.85
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.77
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.72
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.4
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.24
PRK06291	465	aspartate kinase; Provisional	94.11
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.86
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.64
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.5
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	93.49
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	93.46
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.43
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.4
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.34
PRK11899	279	prephenate dehydratase; Provisional	93.13
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.11
PRK08210	403	aspartate kinase I; Reviewed	93.07
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	93.04
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	93.04
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.03
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	93.02
PRK09034	454	aspartate kinase; Reviewed	92.94
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.86
PRK09181	475	aspartate kinase; Validated	92.66
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.62
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.33
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.28
PLN02551	521	aspartokinase	92.07
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	91.94
COG1707	218	ACT domain-containing protein [General function pr	91.84
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.78
PRK11899	279	prephenate dehydratase; Provisional	91.75
PRK06382	406	threonine dehydratase; Provisional	91.71
PRK06382	406	threonine dehydratase; Provisional	91.54
PRK06349	426	homoserine dehydrogenase; Provisional	91.43
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.24
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.9
PRK09084	448	aspartate kinase III; Validated	90.82
COG2150	167	Predicted regulator of amino acid metabolism, cont	90.8
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.79
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.46
PRK08818	370	prephenate dehydrogenase; Provisional	90.25
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	90.19
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	89.6
PRK06545	359	prephenate dehydrogenase; Validated	89.1
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	88.95
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	88.7
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.62
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	88.39
PLN02551	521	aspartokinase	88.34
PRK06545	359	prephenate dehydrogenase; Validated	88.2
PRK08818	370	prephenate dehydrogenase; Provisional	87.69
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.5
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	87.48
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	87.37
PRK08198	404	threonine dehydratase; Provisional	87.33
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.07
PRK06349	426	homoserine dehydrogenase; Provisional	87.02
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	86.45
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	86.09
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	86.05
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	85.89
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	85.7
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	85.52
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.29
PLN02317	382	arogenate dehydratase	85.03
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	84.94
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	84.87
PRK08198	404	threonine dehydratase; Provisional	84.59
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	83.89
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	83.53
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	83.32
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	82.93
PRK08526	403	threonine dehydratase; Provisional	82.65
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	81.89
PRK09181	475	aspartate kinase; Validated	81.7
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	80.42
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	80.42
TIGR02079	409	THD1 threonine dehydratase. This model represents	80.13

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=2.7e-32  Score=285.36  Aligned_cols=186  Identities=22%  Similarity=0.252  Sum_probs=160.0

Q ss_pred             eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       108 v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +...++.++++|+|+++||||||++|+++|+.+|+||++|+|+|.++ .+.|+|||++ .+|.+++ ++++++|++.|.+
T Consensus       693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~L~~  770 (884)
T PRK05007        693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKALEQ  770 (884)
T ss_pred             EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHHHHH
Confidence            34467778999999999999999999999999999999999999864 8889999999 5788774 5788999999999


Q ss_pred             HHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchH
Q 020194          187 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLL  265 (329)
Q Consensus       187 ~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL  265 (329)
                      +|.+....   . ...    ++.+++.       +             .+..|++|.|+| .|+.+|+|+|.|.||||||
T Consensus       771 aL~~~~~~---~-~~~----~~~~~~~-------~-------------~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL  822 (884)
T PRK05007        771 ALTQSSPQ---P-PKP----RRLPAKL-------R-------------HFNVPTEVSFLPTHTDRRSYMELIALDQPGLL  822 (884)
T ss_pred             HHcCCCCC---c-ccc----ccccccc-------C-------------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHH
Confidence            99875431   0 010    0111111       2             334789999999 9999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194          266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  324 (329)
Q Consensus       266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  324 (329)
                      |+|+++|+++|++|++|||+|+|++|+|+|||++.+|+|++ +++++.|+++|+++|..
T Consensus       823 ~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        823 ARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999 67889999999999976

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=1.9e-32  Score=285.51  Aligned_cols=184  Identities=16%  Similarity=0.207  Sum_probs=158.4

Q ss_pred             eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       108 v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +..+++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|||++ .+|.++. ++++++|++.|.+
T Consensus       669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~L~~  746 (854)
T PRK01759        669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQALTK  746 (854)
T ss_pred             EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHHHHH
Confidence            44477789999999999999999999999999999999999998 6789999999999 5788885 5788999999999


Q ss_pred             HHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchH
Q 020194          187 VLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLL  265 (329)
Q Consensus       187 ~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL  265 (329)
                      +|.+....      ..  . .+.+++       .+             .+..||+|.|+| .++.+|+|+|.|+||||||
T Consensus       747 aL~~~~~~------~~--~-~~~~~~-------~~-------------~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL  797 (854)
T PRK01759        747 ALNTNKLK------KL--N-LEENHK-------LQ-------------HFHVKTEVRFLNEEKQEQTEMELFALDRAGLL  797 (854)
T ss_pred             HHcCCCCc------ch--h-cccccc-------cc-------------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHH
Confidence            99875431      10  0 000111       12             234789999999 9999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194          266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (329)
Q Consensus       266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  323 (329)
                      |+|+++|+++|++|++|||+|+|++|+|+|||++.+|+|+++++ +++|+++|.++|+
T Consensus       798 ~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~-~~~l~~~L~~~l~  854 (854)
T PRK01759        798 AQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEE-RKALKSRLLSNLS  854 (854)
T ss_pred             HHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999865 4999999998874

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.97  E-value=4.1e-29  Score=261.89  Aligned_cols=184  Identities=27%  Similarity=0.398  Sum_probs=157.1

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      ....+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|||++ .+|.++.+++++++|++.|.++|.
T Consensus       663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L~  741 (850)
T TIGR01693       663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVLA  741 (850)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHHc
Confidence            34478999999999999999999999999999999999995 5788999999999 578888777789999999999998


Q ss_pred             CCCCcccccccCCCCCCcc-ccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194          190 GYDDFRKAKTSLSPPGIMN-RERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD  267 (329)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~  267 (329)
                      +....   ...+.   .++ .+++.       +             .+.++++|.|+| .++.+|+|+|.|.|||||||+
T Consensus       742 ~~~~~---~~~~~---~~~~~~~~~-------~-------------~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~  795 (850)
T TIGR01693       742 GLAKD---PDTIS---ARRARRRRL-------Q-------------HFAVPPRVTILNTASRKATIMEVRALDRPGLLAR  795 (850)
T ss_pred             CCCcc---ccccc---cccCCcccc-------c-------------CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHH
Confidence            75431   00110   000 11111       1             334789999999 999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  322 (329)
                      |+++|+++|++|++|+|+|+|++++|+|||++..|.|+++ ++++.|+++|.++|
T Consensus       796 i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       796 VGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998 68899999999886

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.4e-28  Score=257.47  Aligned_cols=186  Identities=25%  Similarity=0.346  Sum_probs=157.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCC-CHHHHHHHHHHHHHHHcCC
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIK-DPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~  191 (329)
                      .+.+.|.|+++||||||++|+++|+.+|+||++|+|+|.+ |.+.|+|+|.+ .+|.++. +++++++|++.|.++|.+.
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999999999999998865 67789999999 5677753 3578999999999999876


Q ss_pred             CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHHHHH
Q 020194          192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVC  270 (329)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~I~~  270 (329)
                      ..+   ...+.    .+.+++.       +             .+..+++|.|++ .+..+|+|+|.|.|||||||+|++
T Consensus       781 ~~~---~~~~~----~~~~~~~-------~-------------~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~  833 (895)
T PRK00275        781 DDY---PTIIQ----RRVPRQL-------K-------------HFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR  833 (895)
T ss_pred             Ccc---chhhh----hhhhhhc-------c-------------CCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHH
Confidence            531   11111    1111111       2             234689999999 899999999999999999999999


Q ss_pred             HHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 020194          271 TLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRAS  327 (329)
Q Consensus       271 ~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~~  327 (329)
                      +|+.+|++|++|+|.|.|++|.|+|||++.+|+++.+++++++|+++|.++|..+..
T Consensus       834 ~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~  890 (895)
T PRK00275        834 IFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE  890 (895)
T ss_pred             HHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999888889999999999966543

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=4.6e-28  Score=252.24  Aligned_cols=181  Identities=23%  Similarity=0.260  Sum_probs=152.5

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      .+..+.+.|.|+++|+||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.++ .|.+   .+++.++++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence            556689999999999999999999999999999999999995 5778899999984 5543   3568889999999998


Q ss_pred             CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHHH
Q 020194          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI  268 (329)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~I  268 (329)
                      ++...   . .+.   .++.+++       .+             .+.+||+|.|++ .+..+|+|+|.|.|||||||+|
T Consensus       761 ~~~~~---~-~~~---~~~~~~~-------~~-------------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~I  813 (869)
T PRK04374        761 GDLQK---V-RPA---RRAVPRQ-------LR-------------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADV  813 (869)
T ss_pred             CCCCc---c-ccc---cccCccc-------cc-------------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHH
Confidence            86431   0 110   0001111       12             335789999999 9999999999999999999999


Q ss_pred             HHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (329)
Q Consensus       269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  323 (329)
                      +++|+++|++|++|+|+|.|++|+|+|||++.+|.++.+++ +++|+++|+++|.
T Consensus       814 a~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~-~~~l~~~L~~~l~  867 (869)
T PRK04374        814 AHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESA-RQALRDALCACLD  867 (869)
T ss_pred             HHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999988765 4999999999985

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1e-27  Score=250.11  Aligned_cols=176  Identities=24%  Similarity=0.339  Sum_probs=151.0

Q ss_pred             hcCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HH
Q 020194           11 RMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EV   86 (329)
Q Consensus        11 ~~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~---~~   86 (329)
                      ....|.|.+++..+.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++.+.   ++
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l  740 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQL  740 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999998 8999999999999999987542   35


Q ss_pred             HHHHHHHhccccCCCC-------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194           87 IDYIQQRLETDASFAP-------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (329)
Q Consensus        87 ~~~ie~~L~~~~~~~~-------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~  153 (329)
                      .+.|+++|.+......             ++++.++++.+..+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            6667777766532111             112234457788999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       154 ~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ++++|+|||++ .+|.+++++++ ++|+++|.++|
T Consensus       821 erv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        821 EKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             ceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence            99999999999 67899987555 99999998876

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.9e-27  Score=249.60  Aligned_cols=191  Identities=28%  Similarity=0.446  Sum_probs=160.7

Q ss_pred             ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       110 ~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ..+..+.+.|+|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|++ .+|.+..+++++++|++.|.+++
T Consensus       726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence            3566689999999999999999999999999999999999995 577789999998 56777667789999999999999


Q ss_pred             cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194          189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD  267 (329)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~  267 (329)
                      .+...+   ...+        .++.... ...+             .+..+|+|.|+| .+..+|+|+|.|.|||||||+
T Consensus       805 ~~~~~~---~~~~--------~~r~~~~-~~~~-------------~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~  859 (931)
T PRK05092        805 SGEVRL---PEAL--------AKRTKPK-KRAR-------------AFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYD  859 (931)
T ss_pred             cCCCCC---cccc--------ccccCcc-cccc-------------CCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence            775432   1111        1110000 0002             334789999999 999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 020194          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA  326 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~  326 (329)
                      |+++|+++|++|++|+|.|.|+++.|+|||++.+|+++.+++.+++|+++|.++|..+.
T Consensus       860 I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        860 LTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             HHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999998888999999999996554

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.8e-27  Score=247.64  Aligned_cols=176  Identities=22%  Similarity=0.313  Sum_probs=152.1

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HHHH
Q 020194           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVID   88 (329)
Q Consensus        13 ~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~---~~~~   88 (329)
                      .+|.|.+++..+.++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.++.+.   ++.+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~  766 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRK  766 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999997 7789999999999999987542   3667


Q ss_pred             HHHHHhccccCCCC--------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC
Q 020194           89 YIQQRLETDASFAP--------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (329)
Q Consensus        89 ~ie~~L~~~~~~~~--------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~  154 (329)
                      .|+++|.+.....+              ++++.++++.+..+|+|+|.++||||||++|+++|.++|++|++|+|.|.|+
T Consensus       767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge  846 (884)
T PRK05007        767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE  846 (884)
T ss_pred             HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc
Confidence            77777766532110              1122344477889999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       155 ~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      +++|+|||++ .+|.+++ +++.+.|+++|..+|..
T Consensus       847 ra~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        847 RVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             eEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999998 5788887 67889999999998854

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-27  Score=238.41  Aligned_cols=184  Identities=25%  Similarity=0.380  Sum_probs=154.9

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      .+..+.+.|.|+++|+|+||+.+++++...|+||++|+|+|.. |++.|+|+|.+ .+|.++. +.+...++..|.+++.
T Consensus       679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~~l~  756 (867)
T COG2844         679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIEALL  756 (867)
T ss_pred             cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHHHHh
Confidence            4556889999999999999999999999999999999999965 66889999999 4688776 6788888888888776


Q ss_pred             CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHHH
Q 020194          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI  268 (329)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~I  268 (329)
                      .....  +  ..    ..+.++++       ++|             .++|+|+|.| .+..+|+|||+|.||||||++|
T Consensus       757 s~~~~--~--~~----~~r~~r~~-------~~f-------------~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v  808 (867)
T COG2844         757 SGKAQ--P--PR----RRRIPRKL-------RHF-------------PIPPRVTILPTASNDKTVLEVRALDRPGLLAAL  808 (867)
T ss_pred             cCCCC--C--cc----ccccCccc-------cee-------------ccCCceeeccccCCCceEEEEEeCCcccHHHHH
Confidence            53321  0  11    11223333       334             4789999999 8999999999999999999999


Q ss_pred             HHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 020194          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  325 (329)
Q Consensus       269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~  325 (329)
                      +++|++++++|++|||+|+|++|+|+|||++..|.+++ ++.++.+.+.|.+++..-
T Consensus       809 ~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         809 AGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALLPN  864 (867)
T ss_pred             HHHHHhcccceeeeeeccccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999996 467889999999888653

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=7.7e-27  Score=244.46  Aligned_cols=178  Identities=21%  Similarity=0.387  Sum_probs=150.4

Q ss_pred             CCCEEEEEeCCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCC-cH---
Q 020194           13 NPPRVVIDNNTC---ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIR-DK---   84 (329)
Q Consensus        13 ~~~~V~v~~~~~---~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~-~~---   84 (329)
                      ..|.|.+.+...   .++++|+|+++|+||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++++|.++. ++   
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            467888887765   58999999999999999999999999999999999986 88999999999999999753 22   


Q ss_pred             -HHHHHHHHHhccccCCCC---------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEE
Q 020194           85 -EVIDYIQQRLETDASFAP---------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE  148 (329)
Q Consensus        85 -~~~~~ie~~L~~~~~~~~---------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~  148 (329)
                       ++.+.|+++|.+...+..               ++.+.+..+++.++|+|+|+++||||||++|+++|+.+|+||++|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence             356667777766542110               1122234477788999999999999999999999999999999999


Q ss_pred             EEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       149 i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      |+|.++++.|+|||++ .+|.++.+++++++|+++|.++|.+.
T Consensus       847 I~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        847 IATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999 57888888789999999999999653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.2e-26  Score=239.63  Aligned_cols=175  Identities=23%  Similarity=0.301  Sum_probs=145.9

Q ss_pred             CCCEEEEEe-CCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH-HHHHH
Q 020194           13 NPPRVVIDN-NTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK-EVIDY   89 (329)
Q Consensus        13 ~~~~V~v~~-~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~-~~~~~   89 (329)
                      ..|.|.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+...+ ++.+.
T Consensus       675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~  754 (869)
T PRK04374        675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA  754 (869)
T ss_pred             CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence            356666655 67779999999999999999999999999999999999997 8999999999999988743333 47788


Q ss_pred             HHHHhccccCCCC---------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC
Q 020194           90 IQQRLETDASFAP---------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (329)
Q Consensus        90 ie~~L~~~~~~~~---------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~  154 (329)
                      |+++|.+...+..               ++++.+.++.+.+.|+|+|.+.||||||++|+++|+.+|+||++|+|+|.++
T Consensus       755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~  834 (869)
T PRK04374        755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE  834 (869)
T ss_pred             HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence            8888887532110               0112233467778999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       155 ~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      ++.|+|||++ .+|.++.++++ +.|+++|.++|.
T Consensus       835 ~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        835 RAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             EEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            9999999998 57887766555 999999988774

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.3e-26  Score=239.64  Aligned_cols=178  Identities=25%  Similarity=0.277  Sum_probs=146.5

Q ss_pred             ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       110 ~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      ..+ .+.+.|+|+|+||||||++||++|+.+|+||++|+|+|.+|.+.|+|+|.+ ..|.+.    .++++++.|.++|.
T Consensus       594 ~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~  667 (774)
T PRK03381        594 PAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALD  667 (774)
T ss_pred             eCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHc
Confidence            355 789999999999999999999999999999999999998889999999998 456542    35889999999998


Q ss_pred             CCCCcccccccCCCCCCccccccccc-cccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194          190 GYDDFRKAKTSLSPPGIMNRERRLHQ-IMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD  267 (329)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~  267 (329)
                      +....   ...+        .++... .+...+             .+..+++|.+++ .+..+|+|+|.|.|||||||+
T Consensus       668 ~~~~~---~~~~--------~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~  723 (774)
T PRK03381        668 GDLDV---LARL--------AAREAAAAAVPVR-------------RPAAPPRVLWLDGASPDATVLEVRAADRPGLLAR  723 (774)
T ss_pred             CCCch---hhhh--------hcccccccccccc-------------cCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHH
Confidence            85331   0011        011000 000012             334688999999 888999999999999999999


Q ss_pred             HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      |+++|+++|++|++|+|+|.|+++.|+|||++.+|.+++++  ++.|+++|+
T Consensus       724 Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        724 LARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            99999999999999999999999999999999999999975  788888875

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.3e-26  Score=239.88  Aligned_cols=182  Identities=19%  Similarity=0.282  Sum_probs=150.4

Q ss_pred             ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       110 ~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ..+..+.+.|+|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.++ +|. ..+++++++|++.|.++|
T Consensus       672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l  749 (856)
T PRK03059        672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERL  749 (856)
T ss_pred             ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHH
Confidence            3566789999999999999999999999999999999999885 5778899999984 455 445679999999999999


Q ss_pred             cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEeCCCcchHHH
Q 020194          189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD  267 (329)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~-~~~~~t~l~v~a~DrpGLL~~  267 (329)
                      .++...   .....    ++.+++.       +             .+..+++|.|++ .+..+|+|+|.|+|||||||+
T Consensus       750 ~~~~~~---~~~~~----~~~~~~~-------~-------------~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~  802 (856)
T PRK03059        750 AEQAPL---PEPSK----GRLSRQV-------K-------------HFPITPRVDLRPDERGQYYILSVSANDRPGLLYA  802 (856)
T ss_pred             cCCCCc---chhhc----ccccccc-------c-------------CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHH
Confidence            886531   10110    1111111       2             234788999999 888999999999999999999


Q ss_pred             HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  323 (329)
                      |+++|+.+|++|++|+|.|.|++|.|+|||+   +.++.+++++++|++.|.++|+
T Consensus       803 Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        803 IARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999995   4445677888999999998874

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2e-25  Score=232.83  Aligned_cols=173  Identities=18%  Similarity=0.295  Sum_probs=143.6

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH----HH
Q 020194           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK----EV   86 (329)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~----~~   86 (329)
                      .+.|.|.+......+.++|+|+++|+||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..++    ++
T Consensus       663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i  741 (856)
T PRK03059        663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV  741 (856)
T ss_pred             CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence            346888898888889999999999999999999999999999999999986 89999999999998877 3222    46


Q ss_pred             HHHHHHHhccccCCCC------C---------cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194           87 IDYIQQRLETDASFAP------S---------LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus        87 ~~~ie~~L~~~~~~~~------~---------~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      .+.|+++|.+......      +         +...+..+++.+.|+|+|+++||||||++|+++|+.+|+||++|+|+|
T Consensus       742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence            6777778877532110      0         011223366778999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          152 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       152 ~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      .++++.|+|||++    .++.+++++++|++.|.++|.
T Consensus       822 ~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 LGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999964    224467889999999988763

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.3e-25  Score=230.40  Aligned_cols=168  Identities=20%  Similarity=0.210  Sum_probs=142.0

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        13 ~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      ++|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+++.+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            67899998888 89999999999999999999999999999999999999999999999999998886543467888898


Q ss_pred             HhccccCCC--------C---Cc------ceeee--ecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194           93 RLETDASFA--------P---SL------RSSVG--VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (329)
Q Consensus        93 ~L~~~~~~~--------~---~~------~~~v~--~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~  153 (329)
                      +|.+.....        .   .+      +..+.  .+.+.+.++|+|.++||||||++|+++|+.+|+||++|+|+|.+
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            888753210        0   00      01223  35666789999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHH
Q 020194          154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL  184 (329)
Q Consensus       154 ~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L  184 (329)
                      +++.|+|||++ .+|.+++++  .+.|+++|
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAV  772 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHh
Confidence            99999999999 578888753  56666655

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.2e-24  Score=227.72  Aligned_cols=178  Identities=24%  Similarity=0.350  Sum_probs=150.9

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHH----HH
Q 020194           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE----VI   87 (329)
Q Consensus        13 ~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~----~~   87 (329)
                      .++.|.+.+....++++|+|+++||||||++||++|+.+||||++|+|+| .+|+++|+|+|++++|.++.+++    +.
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            45788899988889999999999999999999999999999999999997 89999999999999998765543    45


Q ss_pred             HHHHHHhccccCCC-------CC----------cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE
Q 020194           88 DYIQQRLETDASFA-------PS----------LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (329)
Q Consensus        88 ~~ie~~L~~~~~~~-------~~----------~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~  150 (329)
                      +.|+.+|.+...+.       .+          +.+.++++.+.++++|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            55666665542211       00          11223346777889999999999999999999999999999999999


Q ss_pred             eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       151 t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      |.++++.|+|||++ .+|.++.+++++++|++.|.++|.+.
T Consensus       878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            99999999999999 57888888888999999999999764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=2e-24  Score=226.63  Aligned_cols=175  Identities=23%  Similarity=0.299  Sum_probs=148.9

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCcHH----H
Q 020194           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDGGWFMDVFNVIDCDGKKIRDKE----V   86 (329)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~~~~~~----~   86 (329)
                      .+.|.|.+.+....++++|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++.+|.++.+++    +
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i  732 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL  732 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence            34688999887778999999999999999999999999999999999999 589999999999999999886543    5


Q ss_pred             HHHHHHHhccccCCC--------C---------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEE
Q 020194           87 IDYIQQRLETDASFA--------P---------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI  149 (329)
Q Consensus        87 ~~~ie~~L~~~~~~~--------~---------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i  149 (329)
                      .+.|+++|.+.....        .         ++++.++++.+..+|+|+|.|.|||||+++|+++|+++|+||.+|+|
T Consensus       733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i  812 (850)
T TIGR01693       733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI  812 (850)
T ss_pred             HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence            666777777643211        0         11222344777889999999999999999999999999999999999


Q ss_pred             EeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          150 WTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       150 ~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      .|.++++.|+|||++ ..|.++++ ++.+.|+++|.++|
T Consensus       813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999998 57888876 78899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.92  E-value=6e-25  Score=160.87  Aligned_cols=75  Identities=65%  Similarity=1.131  Sum_probs=72.9

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  325 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~  325 (329)
                      +|+|+|.|+|||||||+|+++|+++|++|++|+|+|+|++|+|+|||++.+|.|+.+++++++|+++|.++|.|+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999999999999999999999999999999998999999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.6e-24  Score=210.42  Aligned_cols=175  Identities=25%  Similarity=0.368  Sum_probs=141.2

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHH---HH
Q 020194           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE---VI   87 (329)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~---~~   87 (329)
                      ..+|.|.+......+.++|+|+++|+|.||+.+|+++...|+||++|+|+| .+|+++|+|+|++++|.++.+..   +.
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~  748 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALR  748 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHH
Confidence            567999999988889999999999999999999999999999999999997 89999999999999999886432   22


Q ss_pred             HHHHHHhc-cccCCCC--------------CcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194           88 DYIQQRLE-TDASFAP--------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (329)
Q Consensus        88 ~~ie~~L~-~~~~~~~--------------~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~  152 (329)
                      ..+.+++. +... ++              +|++.+..+.+...++++|.+.||||||+.++++|++++++|++|+|.|.
T Consensus       749 ~~l~~~l~s~~~~-~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         749 GELIEALLSGKAQ-PPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHhcCCCC-CccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            33333333 2222 11              11122233666689999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          153 NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       153 ~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      |++++|+|||++ ..|.++++ +....+.+.|.+++.
T Consensus       828 GErveD~F~vt~-~~~~~l~~-~~~q~l~~~ll~al~  862 (867)
T COG2844         828 GERVEDVFIVTD-ADGQALNA-ELRQSLLQRLLEALL  862 (867)
T ss_pred             cccceeEEEEec-cccccCCH-HHHHHHHHHHHHHhc
Confidence            999999999999 57888853 444555565555554

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.89  E-value=3.6e-23  Score=150.42  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=67.2

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      +|+|+|.++|||||||+|+++|+++|++|++|||+|+|++++|+|||++.+|+|+.+++++++|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999999999999999999999999999888999998864

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.89  E-value=6.4e-23  Score=150.18  Aligned_cols=73  Identities=21%  Similarity=0.282  Sum_probs=70.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE--ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR  325 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~--T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~  325 (329)
                      |+|+|.|+|||||||+|+++|+++|++|++|||+  |+|++++|+||| +.+|+|++++++++.|+++|++++..|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999  999999999999 888999999989999999999999765

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.76  E-value=9.5e-18  Score=122.88  Aligned_cols=73  Identities=21%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      +|+|+|.|+||||||++|+++|+++|++|.+|+|.|.|+++.|+|||++ .+|.++.++++.++|++.|.++|.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999999999999999999 689999998899999999998874

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=2.6e-17  Score=119.74  Aligned_cols=69  Identities=28%  Similarity=0.371  Sum_probs=64.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~  185 (329)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 68999988888888888764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.70  E-value=1.6e-16  Score=117.34  Aligned_cols=72  Identities=24%  Similarity=0.377  Sum_probs=68.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHh
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAAIE  323 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~-g~~l~~~~~~~~l~~~L~~~l~  323 (329)
                      |+|+|.++|||||+++|+++|+++|++|+.|+|.|.|+++.|+|||++.+ |.++.+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999998 8888888888999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=3e-16  Score=114.96  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE--eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~--t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      |+++|.++||||||++|+++|+++|++|++|+|.  |.|+++.|+||| + .+|.++.++++.+.|+++|.++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 5 578889888899999999998764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=5.4e-16  Score=115.00  Aligned_cols=71  Identities=21%  Similarity=0.345  Sum_probs=65.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  324 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T-~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  324 (329)
                      +++|.|+||||||++|+++|+++|++|++|+|.| .++++.|+|||++.+|+ ..+++++++|++.|.++|+.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999996 89999999999999777 55667889999999999865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.66  E-value=7.8e-16  Score=113.31  Aligned_cols=71  Identities=25%  Similarity=0.373  Sum_probs=65.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  322 (329)
                      +.++|.++||||||++|+++|+.+|++|++|+|.|. ++++.|+|||++.+|.++.+++++++|++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            678999999999999999999999999999999988 58999999999999999988888899999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.66  E-value=1.5e-15  Score=112.15  Aligned_cols=73  Identities=66%  Similarity=0.996  Sum_probs=66.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHHcC
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      |+|+|+++||||||++|+++|+.+|+||++|+++|.++.+.|+|+|++ .+ |.++.+++++++|++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999999999999999998 45 77777788999999999988753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.64  E-value=9.4e-15  Score=126.58  Aligned_cols=138  Identities=14%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (329)
Q Consensus       113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (329)
                      ...+++|++.|+||||+++.++++|+++||||.+.+....++.+.-++.|+.    .+    ..+++|+..|.. +.+..
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~----~~~~~le~~L~~-l~~~~   75 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SW----NAITLIESTLPL-KGAEL   75 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----Ch----hHHHHHHHHHHh-hhhhc
Confidence            3468899999999999999999999999999999999999999999998864    22    456888888776 44333


Q ss_pred             CcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHH
Q 020194          193 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL  272 (329)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l  272 (329)
                      ++   .  +       ..++..      .+               .+      ......+.++|.+.|||||+++|+++|
T Consensus        76 ~L---~--i-------~v~~~~------~~---------------~~------~~~~~~~~v~v~G~DrPGIV~~vT~~l  116 (190)
T PRK11589         76 DL---L--I-------VMKRTT------AR---------------PR------PAMPATVWVQVEVADSPHLIERFTALF  116 (190)
T ss_pred             Ce---E--E-------EEEecc------cc---------------cc------ccCCceEEEEEEECCCCCHHHHHHHHH
Confidence            32   0  1       011110      00               00      011225899999999999999999999


Q ss_pred             hcCCeEEEEEEEEecCC--eEEEEEEEE
Q 020194          273 TDMQYVVFHGMVNTGRT--EAYQEFYIR  298 (329)
Q Consensus       273 ~~~~i~I~~a~I~T~g~--~~~D~F~v~  298 (329)
                      +++|+||...+..|++.  ...+.|.+.
T Consensus       117 a~~~iNI~~L~T~~~~a~~~~~~lf~~~  144 (190)
T PRK11589        117 DSHHMNIAELVSRTQPAEGERPAQLHIQ  144 (190)
T ss_pred             HHcCCChhheEEeeecCCCCCcccEEEE
Confidence            99999999999999985  566666654

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.62  E-value=1.2e-14  Score=125.88  Aligned_cols=155  Identities=14%  Similarity=0.174  Sum_probs=110.0

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcccc---CC
Q 020194           24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA---SF  100 (329)
Q Consensus        24 ~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~---~~  100 (329)
                      ...+.+|+++++||||+.++++++|+++||||++.+....+|.+.-++.|   ++.    |.....|+..|....   .+
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~----~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGS----WNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCC----hhHHHHHHHHHHhhhhhcCe
Confidence            45788999999999999999999999999999999999988877666766   333    445566777665432   11


Q ss_pred             CCCcceeee-ecCC-CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC------eEEEEEEEEeCCCCCCCC
Q 020194          101 APSLRSSVG-VMPT-EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND------RAAAVVHVTDHSTGYAIK  172 (329)
Q Consensus       101 ~~~~~~~v~-~~~~-~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~------~~~d~f~V~~~~~g~~~~  172 (329)
                      ....++.-. .... ...+.++|+|.||||+++.++++|+++|+||.+.+..+.+.      .+.-.|.+.-| .+.   
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~---  153 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQ---  153 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCC---
Confidence            111111000 0111 12489999999999999999999999999999999988763      34455555553 222   


Q ss_pred             CHHHHHHHHHHHHHHHcCCCC
Q 020194          173 DPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       173 ~~~~~~~l~~~L~~~L~~~~~  193 (329)
                         ..+.|+++|.+ |++++.
T Consensus       154 ---~~~~L~~~l~~-l~~eL~  170 (190)
T PRK11589        154 ---DAANIEQAFKA-LCTELN  170 (190)
T ss_pred             ---CHHHHHHHHHH-HHHHhC
Confidence               24677787776 444444

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.62  E-value=5.6e-15  Score=108.71  Aligned_cols=71  Identities=34%  Similarity=0.524  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|. +|.+.|+|||++ .+|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999998 588999999998 56777766788999999988754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=1.6e-14  Score=107.02  Aligned_cols=71  Identities=24%  Similarity=0.352  Sum_probs=63.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      .++|+++||||||++++++|+++|+||++|+|+| .++.+.|+|||+++ ++. ..+++++++++++|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 78899999999984 555 44568999999999998865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.58  E-value=1.7e-14  Score=103.60  Aligned_cols=65  Identities=25%  Similarity=0.302  Sum_probs=56.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHh
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL   94 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L   94 (329)
                      .+|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++.+|.  .+..+.+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence            58999999999999999999999999999999996 89999999999999887  2234566666554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.50  E-value=1e-12  Score=133.87  Aligned_cols=144  Identities=14%  Similarity=0.073  Sum_probs=117.8

Q ss_pred             EEEEEEe-CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcc
Q 020194          117 TSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR  195 (329)
Q Consensus       117 ~~i~v~~-~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  195 (329)
                      ..++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.+...|.|.. ..|.+. ++   ..+++.+..++.++.++ 
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~-  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPD-  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCc-
Confidence            5677777 9999999999999999999999999999 888899999998 567764 33   77888888888776542 


Q ss_pred             cccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhcC
Q 020194          196 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDM  275 (329)
Q Consensus       196 ~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~~  275 (329)
                           +.                                  ..+|++.+..     +++||++.||||+|+.|+++|.  
T Consensus       620 -----~~----------------------------------~~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~--  653 (693)
T PRK00227        620 -----PA----------------------------------PGITATFWHG-----NILEVRTEDRRGALGALLGVLP--  653 (693)
T ss_pred             -----cc----------------------------------CCCCceEeeC-----cEEEEEeCccccHHHHHHHHhh--
Confidence                 10                                  0246666653     8999999999999999999999  


Q ss_pred             CeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh
Q 020194          276 QYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE  323 (329)
Q Consensus       276 ~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~  323 (329)
                        +|.+|+++|.|..+.|.||+...       . .+.+++..+..++.
T Consensus       654 --~~~~~~~~~~g~~~~~~~~~~~~-------~-~r~~~~~~~~~~~~  691 (693)
T PRK00227        654 --DLLWITASTPGATMIVQAALKPG-------F-DRATVERDVTRVLA  691 (693)
T ss_pred             --hhhhHhhcCCCcceEEEEEecCc-------c-cHHHHHHHHHHHHh
Confidence              89999999999999999999822       1 25677777777664

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.41  E-value=1.9e-12  Score=107.65  Aligned_cols=160  Identities=16%  Similarity=0.176  Sum_probs=119.1

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (329)
Q Consensus       113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (329)
                      ..++++|+++|.||||+...++++..++||||.++|+...|+.+..+..++-    .    .+...+|+..|.. +..++
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s----~dav~~le~~l~~-l~~~~   72 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----S----WDAVTLLEATLPL-LGAEL   72 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----C----HHHHHHHHHHhhc-ccccC
Confidence            3467899999999999999999999999999999999999999998888875    2    3567888888775 55555


Q ss_pred             CcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHH
Q 020194          193 DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTL  272 (329)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l  272 (329)
                      ++     .+.      . .|.                         -+++  .......+.++|.+.|||||+.+++++|
T Consensus        73 ~L-----~v~------m-~rt-------------------------~~~~--~~a~~~~v~v~v~a~DrpgIv~~~T~lf  113 (176)
T COG2716          73 DL-----LVV------M-KRT-------------------------GAHP--TPANPAPVWVYVDANDRPGIVEEFTALF  113 (176)
T ss_pred             Ce-----EEE------E-eec-------------------------CCCc--cCCCCceEEEEEEecCCccHHHHHHHHH
Confidence            53     110      0 010                         0110  0134577899999999999999999999


Q ss_pred             hcCCeEEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          273 TDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (329)
Q Consensus       273 ~~~~i~I~~a~I~T~g~--~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  322 (329)
                      ..+|++|++....|+..  .-.-.|+++=.-+-|.+-  ....|++.+++..
T Consensus       114 ~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al~  163 (176)
T COG2716         114 DGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEALC  163 (176)
T ss_pred             HhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHHH
Confidence            99999999999999864  366678775443444432  2456666655543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.41  E-value=2.2e-12  Score=94.56  Aligned_cols=67  Identities=24%  Similarity=0.349  Sum_probs=60.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      |.++|.++||||+|++|+.+|+++|++|.+|++.|.++.+.|+|+|++.+|.++ ++++.++|++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999889999999999999988 6667777777664

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.39  E-value=3.4e-12  Score=92.72  Aligned_cols=70  Identities=27%  Similarity=0.437  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  322 (329)
                      |+++|.++||||+|++|+++|+++|++|.++++.|.++.+.|.|++++.+|.+ .+.+..++|+++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            67999999999999999999999999999999999999999999999999998 45677889999988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.35  E-value=9.9e-12  Score=91.10  Aligned_cols=68  Identities=25%  Similarity=0.509  Sum_probs=60.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhc
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLE   95 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~   95 (329)
                      +++|+|+++|+||+|++++++|+.+|+||++|.++|.+++++|+|+|.++++.+. +.+..+.|++.|-
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999988889999999999988876 5556677777764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.32  E-value=3.1e-11  Score=123.11  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=120.2

Q ss_pred             EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC-CCcc
Q 020194           28 TVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-PSLR  105 (329)
Q Consensus        28 ~~v~v~~-~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~-~~~~  105 (329)
                      -.++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+.++..+.+.+..++.+..+.. +.+.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            5777887 9999999999999999999999999999 88888999999988988777788888888888876532 2233


Q ss_pred             eeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 020194          106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (329)
Q Consensus       106 ~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~  185 (329)
                      +...+.     ++++|.+.||+|+|+.++++|.    +|..|++.|.|..++|.||+..   |.      ...+++.++.
T Consensus       626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~  687 (693)
T PRK00227        626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT  687 (693)
T ss_pred             ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence            333332     7999999999999999999999    8889999999999999999984   21      2367778877


Q ss_pred             HHHcC
Q 020194          186 NVLRG  190 (329)
Q Consensus       186 ~~L~~  190 (329)
                      .+|.+
T Consensus       688 ~~~~~  692 (693)
T PRK00227        688 RVLAG  692 (693)
T ss_pred             HHHhc
Confidence            77654

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.32  E-value=1.8e-11  Score=87.95  Aligned_cols=65  Identities=23%  Similarity=0.356  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      +.|.|+++||||||++++++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.      .-+.|+++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCcc------chHHHHHHHHHhh
Confidence            578999999999999999999999999999999986 467789999998 3443      2255667776655

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.30  E-value=1.5e-11  Score=102.42  Aligned_cols=158  Identities=13%  Similarity=0.163  Sum_probs=112.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC---CC
Q 020194           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA  101 (329)
Q Consensus        25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~---~~  101 (329)
                      ..+.+|++++.||||+...+|+...++||||+++++...++.+.-+..   .+|.    |+-...||..|....+   +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~l---isgs----~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIML---ISGS----WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEE---EeeC----HHHHHHHHHHhhcccccCCeE
Confidence            457899999999999999999999999999999999997776653333   3555    8888999998876432   22


Q ss_pred             CCccee-eee-cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHH
Q 020194          102 PSLRSS-VGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRL  177 (329)
Q Consensus       102 ~~~~~~-v~~-~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~  177 (329)
                      ..+.+. ... ......+.+.|.+.||||++.++|+.|..+|+||.+....|..  +.-.-.|...- .-.-|.+  -..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--~~i  152 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--LSI  152 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--CcH
Confidence            111111 111 2344678899999999999999999999999999988887752  33334565544 1223332  345


Q ss_pred             HHHHHHHHHHHcCCCC
Q 020194          178 STIKELLFNVLRGYDD  193 (329)
Q Consensus       178 ~~l~~~L~~~L~~~~~  193 (329)
                      ..|++++.. |.++..
T Consensus       153 ~~l~~~f~a-l~~~L~  167 (176)
T COG2716         153 SALRDAFEA-LCDELN  167 (176)
T ss_pred             HHHHHHHHH-HHHhhc
Confidence            778888776 555443

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.26  E-value=7.4e-11  Score=85.59  Aligned_cols=70  Identities=41%  Similarity=0.609  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      |.+.|.++|+||+|++|+++|+.+|++|.++++.+.++.+.+.|++++ ..|.+. +.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998888899999998 466664 5578899999887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.09  E-value=1.2e-09  Score=78.87  Aligned_cols=69  Identities=32%  Similarity=0.483  Sum_probs=61.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      +.+.|.++|+||+|++|+++|+++|++|.++.+.|.++...+.|++.+.++.+ .++++++.|++.|...
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence            36889999999999999999999999999999999888999999999988887 4456778898888765

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.96  E-value=9.5e-09  Score=74.09  Aligned_cols=69  Identities=41%  Similarity=0.627  Sum_probs=59.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (329)
                      +.|.|.++|+||+|++++++|+.+|++|.++.+.+.++...+.|++..+ ++... ++++++++++.|.++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhh
Confidence            3688999999999999999999999999999999987777899999984 44543 457888899888764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.85  E-value=3.5e-08  Score=72.96  Aligned_cols=64  Identities=25%  Similarity=0.404  Sum_probs=54.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (329)
                      ..+|++.|+||||+++.++++|+++|+||.+.+..+.++++...+.|.-+        ++..++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999863        35678888888873

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.76  E-value=2.8e-07  Score=72.08  Aligned_cols=112  Identities=25%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCccee
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS  107 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~~  107 (329)
                      -+|+++..|+||-++..+.+|..+|+||..-.|.-.+.+.+..++|..++.       .    .++|....-       .
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~-------A----~~~Lee~gF-------~   65 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE-------A----HSVLEEAGF-------T   65 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH-------H----HHHHHHCCc-------E
Confidence            479999999999999999999999999998888777777777777644322       2    234443320       0


Q ss_pred             eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEE
Q 020194          108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHV  162 (329)
Q Consensus       108 v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V  162 (329)
                      |.     ..-++-|...|+||-++.|+++|.++++|+.....++.. +.+..+|.+
T Consensus        66 Vr-----~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          66 VR-----ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             EE-----eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence            11     244788999999999999999999999999999999865 444444444

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.63  E-value=5.6e-07  Score=66.50  Aligned_cols=67  Identities=19%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  324 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  324 (329)
                      +.+|++.++||||+++.|+++|+++|.||...+..+.|++..-.+.|+-+       ++..++|+++|.+...+
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~~~   68 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELAEE   68 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999998988766       44678888888776554

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.61  E-value=5.2e-07  Score=64.08  Aligned_cols=62  Identities=18%  Similarity=0.171  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~--~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      |.+.|.++||||+|++|+++|+++|+||.++...+.++  .....+...+.        ...+.+.++|.+.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--------EDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--------HGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--------CCHHHHHHHHHcc
Confidence            67899999999999999999999999999999999887  34444444443        3455666665543

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.58  E-value=4.2e-07  Score=67.34  Aligned_cols=68  Identities=22%  Similarity=0.350  Sum_probs=54.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (329)
                      ++|++.|+||||+.+.|+++|+++|+||.+++.++.++.+.-...+..+    +    ...+.|++.|.. +.++.+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~-~~~~~~   69 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPG-LARRLD   69 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHH-HHHHcC
Confidence            6899999999999999999999999999999999988888666666542    1    124778887776 544443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.53  E-value=4.1e-07  Score=62.85  Aligned_cols=59  Identities=22%  Similarity=0.335  Sum_probs=51.7

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHH
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV   86 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~   86 (329)
                      ++|+|.|||+.||=.++|+++.+.|++|..+++.|++.|++..|+|.......-..|.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~l   59 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDL   59 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHH
Confidence            47999999999999999999999999999999999999999999998765443345754

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.53  E-value=4.7e-07  Score=66.67  Aligned_cols=63  Identities=24%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (329)
                      +|+|.|+||||+.++++++|+++|+||.+.+..+.++.+.-.|.+.-| .+.      ..+.|++.|...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l   63 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFK   63 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHH
Confidence            378999999999999999999999999999999998888888888763 121      247788887763

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.46  E-value=2.1e-06  Score=60.84  Aligned_cols=61  Identities=26%  Similarity=0.348  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC--eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~--~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      |.|.|.++||||+|++++++|+++|+||.++.+.+.++  ....++...+         ....+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999999876  3334444433         2344666666665

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.45  E-value=1.5e-06  Score=64.39  Aligned_cols=48  Identities=19%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~   74 (329)
                      +.+|++.|+||||+.++++++|+++|+||.+.+.+..+|.+.-.+.+.
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~   48 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE   48 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence            368999999999999999999999999999999999777775555543

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.37  E-value=2e-06  Score=63.27  Aligned_cols=62  Identities=15%  Similarity=0.086  Sum_probs=48.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      .|+|.++||||+.++++++|+++||||.+.+..+.++.+.-.|.+.-+.+..  ..++.+.++.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~--~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD--SEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCC--HHHHHHHHHH
Confidence            3789999999999999999999999999999888777777678877665532  1344444444

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.22  E-value=5.4e-06  Score=62.95  Aligned_cols=70  Identities=20%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (329)
                      .+|++.|+|+||++++|+++|+++|+||.+.+..+.++.+.-.+.+.-+  +..    ...+.|++.|.. |.++.+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~-l~~~~~   71 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEE-LGKELG   71 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHH-HHHHcC
Confidence            5789999999999999999999999999999999988887777777653  101    124778888777 444333

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.12  E-value=1e-05  Score=61.40  Aligned_cols=49  Identities=24%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~   76 (329)
                      ..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            4789999999999999999999999999999998877766656666544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.09  E-value=2.8e-05  Score=57.70  Aligned_cols=67  Identities=27%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC------CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN------DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~------~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      +|++.|+|+||++++|+++|+++|+||.+.+..+.+      +.+.-.+.+..| .+  .    ...++++.|.. +.++
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~-l~~~   72 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEE-LCDD   72 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHH-HHHH
Confidence            478999999999999999999999999999999976      444445555442 11  1    24677787776 4443


Q ss_pred             C
Q 020194          192 D  192 (329)
Q Consensus       192 ~  192 (329)
                      .
T Consensus        73 ~   73 (81)
T cd04869          73 L   73 (81)
T ss_pred             h
Confidence            3

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=98.09  E-value=1.7e-05  Score=60.38  Aligned_cols=71  Identities=21%  Similarity=0.244  Sum_probs=53.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (329)
                      .+++++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+  +.+.    ..+.|++.|.. +.+...
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~-l~~~~~   73 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE-LGKELG   73 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH-HHHHcC
Confidence            67899999999999999999999999999999999877766665555442  1111    13677777766 444333

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.09  E-value=2.7e-05  Score=57.82  Aligned_cols=62  Identities=18%  Similarity=0.207  Sum_probs=45.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG------GWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~------g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      .|++.|+|+||+.++++++|+++|+||.+.+..+.+      +.+.-.+.+.-+.+.  +..++.+.++.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~--~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGT--DLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCC--CHHHHHHHHHH
Confidence            378999999999999999999999999999998844      555545665554332  22345555544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=98.08  E-value=1.7e-05  Score=60.35  Aligned_cols=50  Identities=26%  Similarity=0.290  Sum_probs=42.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~   76 (329)
                      ...|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~   52 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence            57899999999999999999999999999999988877777665555433

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.06  E-value=2.4e-05  Score=57.29  Aligned_cols=63  Identities=17%  Similarity=0.230  Sum_probs=44.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +|++.|+||||++++|+++|+++|+||.+.+..+..  +.+.-.+.+..+ .+ .    -..+.+++.|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~-~----~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GF-D----LSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CC-C----CCHHHHHHHHHH
Confidence            478999999999999999999999999999999732  332222222221 00 0    125778877776

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.00  E-value=5.4e-05  Score=55.35  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=32.3

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 020194           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS   62 (329)
Q Consensus        29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t   62 (329)
                      +|++.|+||||++++++++|+++|+||.+.+.++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            4789999999999999999999999999999986

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.99  E-value=0.00022  Score=66.07  Aligned_cols=119  Identities=9%  Similarity=0.017  Sum_probs=67.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCC
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~--t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~  103 (329)
                      ...+|+|.|+||||+.++++++|+++|+||++.+.+  +..|.++-.+.+........+..++.+.+++.-.+ .+    
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~-l~----   82 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK-FD----   82 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH-hC----
Confidence            346899999999999999999999999999999997  33333332322222111112223444444442222 11    


Q ss_pred             cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       104 ~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      ....+.+..  ....|-|.+.-+..-|..|..+.....++..=+-+.+
T Consensus        83 l~~~i~~~~--~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         83 MQWAIHPDG--QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             CeEEEecCC--CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence            111222222  2234444444444557777777777766654444444

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.97  E-value=0.00034  Score=64.65  Aligned_cols=116  Identities=8%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcce
Q 020194           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (329)
Q Consensus        29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~  106 (329)
                      +|++.|+|+||+.++++++|+++|+||++.+.+..  .|++.-.+.+..+ +...+.+++.+.++.++.....    ...
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~----l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFE----MTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhC----CEE
Confidence            58999999999999999999999999999999873  4666645555433 2222234455555553333222    111


Q ss_pred             eeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       107 ~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      .+...  .....|-|.+.-+..-|..|........+++.=+-+.+
T Consensus        77 ~l~~~--~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        77 ELILA--DKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             EEecC--CCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence            12111  12234444444445557777777777666654444444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.92  E-value=4.1e-05  Score=53.08  Aligned_cols=67  Identities=19%  Similarity=0.299  Sum_probs=57.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (329)
                      ++|+|.++|+.||=.++++++...|++|..+.+.|.|.....+|+|...  ...+  +-+|..|++.|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence            4789999999999999999999999999999999988888899999862  2223  35789999888763

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.91  E-value=0.00016  Score=53.61  Aligned_cols=64  Identities=17%  Similarity=0.163  Sum_probs=48.9

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec--CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~--g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      ..+.|.|.+.||||+|++|++++++.|++|..+.+.+.  ++.+.-.|.+.=.      +.+.++.|.+.|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999985  4567777766432      3456777777664

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.74  E-value=0.0003  Score=52.16  Aligned_cols=63  Identities=22%  Similarity=0.365  Sum_probs=46.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~  185 (329)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+...|.+.-.       +.+.+..|-+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999995  4566666766642       3345555555443

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.74  E-value=0.00012  Score=67.92  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe--eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t--~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (329)
                      ..++|+|.|+||||+.+.|+++|+++|+||.+.+..+  .++.+.-.+.+.-.  ..+    ...+.|+++|.. |.++.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~----~~~~~L~~~L~~-l~~~l   77 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--GLI----FNLETLRADFAA-LAEEF   77 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHH-HHHHh
Confidence            5689999999999999999999999999999999999  77765555555430  111    226788888776 54444


Q ss_pred             C
Q 020194          193 D  193 (329)
Q Consensus       193 ~  193 (329)
                      .
T Consensus        78 ~   78 (286)
T PRK06027         78 E   78 (286)
T ss_pred             C
Confidence            4

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.72  E-value=4.9e-05  Score=57.03  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ..+|+|.|.||||+.+.++++|+++|+||++-...-..|.+...+.|..+  ...    .....+++.|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~~----~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KEV----VDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hHh----ccHHHHHHHHHHHH
Confidence            56899999999999999999999999999988777777888888888653  111    23456666666543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.69  E-value=0.0019  Score=59.94  Aligned_cols=116  Identities=8%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCc
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~  104 (329)
                      ...|+|.|+||||+.++++++|+++|+||.+.+.++  .++.+.-.+.+..+.+.  +...+.+.++. +..+..+    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~-l~~~l~l----   79 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAP-IAARFGM----   79 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHH-HHHHhCc----
Confidence            468999999999999999999999999999999985  44555545555444443  12334444444 2222211    


Q ss_pred             ceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       105 ~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      ...+.+...  ...|.|.+.-+.--|..+..+.....++..=+-+.+
T Consensus        80 ~i~i~~~~~--~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         80 QWELHDPAA--RPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEEeeccc--CceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence            111222111  223444444444457777777777666544444444

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.69  E-value=0.0018  Score=60.08  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V   73 (329)
                      .+..|++.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.-.+.+
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v   54 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF   54 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE
Confidence            4678999999999999999999999999999999998  66765544444

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.62  E-value=0.004  Score=49.10  Aligned_cols=111  Identities=18%  Similarity=0.152  Sum_probs=75.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcccc
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKA  197 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~  197 (329)
                      +|+|...++||=|+.++.+|+.+|+||.-..|.-.++--..-+.|..         +   +.-.+.|+    +. +    
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~---d~A~~~Le----e~-g----   63 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------P---DEAHSVLE----EA-G----   63 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------h---HHHHHHHH----HC-C----
Confidence            68899999999999999999999999987777655443333333332         1   11112222    21 1    


Q ss_pred             cccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhcCCe
Q 020194          198 KTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQY  277 (329)
Q Consensus       198 ~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i  277 (329)
                                               |.                 |.      ..-++-|...|+||=|..|+.+|.+.++
T Consensus        64 -------------------------F~-----------------Vr------~~dVlaVEmeD~PG~l~~I~~vl~d~di   95 (142)
T COG4747          64 -------------------------FT-----------------VR------ETDVLAVEMEDVPGGLSRIAEVLGDADI   95 (142)
T ss_pred             -------------------------cE-----------------EE------eeeEEEEEecCCCCcHHHHHHHHhhcCc
Confidence                                     10                 11      1246778889999999999999999999


Q ss_pred             EEEEEEEEecC-CeEEEEEEE
Q 020194          278 VVFHGMVNTGR-TEAYQEFYI  297 (329)
Q Consensus       278 ~I~~a~I~T~g-~~~~D~F~v  297 (329)
                      |+.++-..+.. +.+.-.|-+
T Consensus        96 NldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          96 NLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             CceeeeeeeecCceEEEEEEh
Confidence            99998866544 445544443

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.62  E-value=0.00061  Score=49.45  Aligned_cols=61  Identities=11%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      |.|.+.||||+|.+|+.++++.|++|......+.. ..+.-.|-+.-.      +.+.++.+.++|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhc
Confidence            68899999999999999999999999998887653 556666655322      34566777777653

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.59  E-value=0.00034  Score=64.63  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (329)
                      +|+|.|+|+||+.+.|+++|+++|+||.+.+.+..  ++.+.-.+.+..+  +..+    ..+.|++.|..++..+.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~~~~~   73 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALAEKFE   73 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHHHHhC
Confidence            68999999999999999999999999999999985  4676666666542  2122    246777777764444333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.56  E-value=0.00042  Score=64.29  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEE--eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~--t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..++|+|.|+||||+.+.|+++|+++|+||.+.+.+  +..+.+...+.+.. .....+    ..+.|+++|..
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~   76 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQP   76 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHH
Confidence            457899999999999999999999999999999998  44455554433432 111122    24667777766

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.53  E-value=0.00043  Score=50.57  Aligned_cols=58  Identities=7%  Similarity=0.091  Sum_probs=42.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      -|+|.+.||+|+|++|+.++++.|++|.+..+.+. +...  |-+.      +.+.+++..|.++|+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~------v~~~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFP------TIEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeE------ecCHHHHHHHHHHHh
Confidence            37899999999999999999999999999998875 2211  2221      123455666666655

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.53  E-value=0.0013  Score=47.64  Aligned_cols=61  Identities=13%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +.|.+.||||+|++|+.++++.|+||.+....+.. +.+...|.+.-.       +.++++.+...|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            67899999999999999999999999998887754 555555655531       23566666666554

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.51  E-value=0.061  Score=55.03  Aligned_cols=216  Identities=13%  Similarity=0.167  Sum_probs=127.6

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC--
Q 020194           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS--   99 (329)
Q Consensus        25 ~~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~--   99 (329)
                      .+...|++.+.   +.+|+++++..+|+..|++|....   ..+..+ +|.|...+.     .+..+.|++.+.....  
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence            36778888875   789999999999999999997444   233333 355543221     3566677777743321  


Q ss_pred             -CCCC-c---ceeee-ecCCCCeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEe-eC--CeEEEEEEEEeCCCCC
Q 020194          100 -FAPS-L---RSSVG-VMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWT-HN--DRAAAVVHVTDHSTGY  169 (329)
Q Consensus       100 -~~~~-~---~~~v~-~~~~~~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~--~~~~d~f~V~~~~~g~  169 (329)
                       +.|. +   ...+. .....+...|++. .++.+|+++++.+.|+++|++|..-.... .+  |...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence             1111 0   11121 2333445555554 56889999999999999999998654321 12  12334455432     


Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCC
Q 020194          170 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEK  249 (329)
Q Consensus       170 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~  249 (329)
                           +...++.+.+.+ |....+                                             ...+.+.   .
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~---------------------------------------------~~~i~~~---~  517 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP---------------------------------------------GAEVEDG---P  517 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC---------------------------------------------CceEEEe---C
Confidence                 122333232332 222111                                             0112222   2


Q ss_pred             CeEEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEE-EEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          250 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQE-FYIRHVDGLPISSEAERERVIQCLEAAI  322 (329)
Q Consensus       250 ~~t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~-F~v~~~~g~~l~~~~~~~~l~~~L~~~l  322 (329)
                      ....+.|.+.   .+||++.++.++|++.||++....  |   ..... |.| +.        +..++..++|.+.+
T Consensus       518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV-~~--------~~~~~av~~Lh~~f  580 (587)
T PRK07431        518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T---SEIRTSCVV-AE--------DDGVKALQAVHQAF  580 (587)
T ss_pred             CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEE-eH--------HHHHHHHHHHHHHh
Confidence            5678888875   899999999999999999997665  2   33343 544 33        23455555555554

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.50  E-value=0.00015  Score=54.41  Aligned_cols=47  Identities=26%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V   73 (329)
                      ...|+|.++||||+.+.++++|+++|+||++-+.+--+|++--.+.|
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV   49 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV   49 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence            46899999999999999999999999999987766666766544544

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.50  E-value=0.004  Score=57.73  Aligned_cols=71  Identities=11%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (329)
                      ..++|+|.|+||||+.+.+|++|+++|+||.+.+..+.  ++.+.-.+.+..+ .+  .    ..+.|+++|.. +.++.
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~--~----~~~~L~~~L~~-l~~~l   77 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG--L----DEDALRAGFAP-IAARF   77 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC--C----CHHHHHHHHHH-HHHHh
Confidence            36789999999999999999999999999999999853  3455545555432 12  1    24778888776 44434


Q ss_pred             C
Q 020194          193 D  193 (329)
Q Consensus       193 ~  193 (329)
                      .
T Consensus        78 ~   78 (286)
T PRK13011         78 G   78 (286)
T ss_pred             C
Confidence            3

>PRK07431 aspartate kinase; Provisional

Probab=97.36  E-value=0.053  Score=55.46  Aligned_cols=191  Identities=15%  Similarity=0.208  Sum_probs=112.5

Q ss_pred             ecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcceeeeecC
Q 020194           34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP  112 (329)
Q Consensus        34 ~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~~v~~~~  112 (329)
                      ..+.+|+++++...|+.+|+||.--.... ..+..-..|.|...+-     ....+.|++ +..+..     ...  ...
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~-----~~~--i~~  344 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALG-----GAE--VLV  344 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcC-----CCc--EEE
Confidence            46889999999999999999998664433 3333333577643221     112222222 222111     001  122


Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       113 ~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      ..+...|.|.|.   +.+|+++++..+|++.|++|....  +  ......|.|..          +..++..+.|++.+.
T Consensus       345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f~  410 (587)
T PRK07431        345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAFE  410 (587)
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHhc
Confidence            345778888886   789999999999999999996544  2  23334455543          234555566776664


Q ss_pred             CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEE-eCCCcchHHHH
Q 020194          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR-SKDRPKLLFDI  268 (329)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~-a~DrpGLL~~I  268 (329)
                      .+..    ...+.|.       +        ...+           ...-+-|.   ...+...++|. ..+.+|++++|
T Consensus       411 ~~~~----~~~~~~~-------~--------~~~~-----------~~~v~gIa---~~~~~~~i~l~~~~~~~g~~a~i  457 (587)
T PRK07431        411 LEDS----QIEINPT-------A--------SGQD-----------EPEVRGVA---LDRNQAQLAIRNVPDRPGMAASI  457 (587)
T ss_pred             cCCc----ccccCcc-------c--------cCCC-----------CCcEEEEE---ccCCEEEEEECCCCCCccHHHHH
Confidence            3221    0011110       0        0000           00001222   23466677765 56889999999


Q ss_pred             HHHHhcCCeEEEEEEE
Q 020194          269 VCTLTDMQYVVFHGMV  284 (329)
Q Consensus       269 ~~~l~~~~i~I~~a~I  284 (329)
                      ...|+++|++|....-
T Consensus       458 f~~l~~~~i~id~i~~  473 (587)
T PRK07431        458 FGALAEANISVDMIVQ  473 (587)
T ss_pred             HHHHHHcCCeEEEEEe
Confidence            9999999999998854

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.30  E-value=0.0012  Score=59.32  Aligned_cols=66  Identities=14%  Similarity=0.223  Sum_probs=46.9

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      ...++++.|+|++|+.+++++.|+.+||||.+++-++  ..|+++-.... ..++.+.+.+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f-~~~~~~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEF-EGEGGPLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEE-ecCCCcccHHHHHHHHHH
Confidence            4679999999999999999999999999999999997  34665432222 233333333444444444

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.25  E-value=0.0039  Score=44.32  Aligned_cols=61  Identities=16%  Similarity=0.269  Sum_probs=41.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-----~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +.|..+|+||+|++|+.+|+++|+||.+.......     +.+...|.+..       .+.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            35788999999999999999999999988766532     33333344432       123455666666554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.22  E-value=0.0023  Score=47.04  Aligned_cols=63  Identities=5%  Similarity=0.092  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..+.+...|+||+|+++++.|++.|+||.+..+.... ....-+..+..   |    ++...++|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---C----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhC
Confidence            4789999999999999999999999999998887543 33333333322   1    23456666666654

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.21  E-value=0.002  Score=45.81  Aligned_cols=44  Identities=7%  Similarity=0.034  Sum_probs=36.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI  297 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v  297 (329)
                      ..+.|..+|+||.|++|+.+|++.|+||.+.-+...++.  -.|.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl   45 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL   45 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence            357788999999999999999999999999988776664  44444

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.21  E-value=0.0035  Score=44.61  Aligned_cols=34  Identities=12%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG  287 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~  287 (329)
                      +.|..+|+||+|++|+++|++.|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999998876543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.20  E-value=0.0025  Score=46.51  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~  152 (329)
                      .+.|.+.||+|++++|+.+++..|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.19  E-value=0.0015  Score=44.76  Aligned_cols=46  Identities=20%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      +.+..+|+||.+++++..|.++|+||.+..+...+ +.....|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999988865 55556666643

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.18  E-value=0.0032  Score=53.93  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=33.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT  286 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T  286 (329)
                      ..+.|.+.|+||+|++|+.+|+.+|+||.+..+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            57899999999999999999999999999999865

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.17  E-value=0.0029  Score=45.25  Aligned_cols=47  Identities=11%  Similarity=0.083  Sum_probs=37.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEE
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIR  298 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~  298 (329)
                      +.+.+..+|+||.|++|++.|+++|++|.........  ....-.|.++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4678889999999999999999999999988766652  2444466665

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.16  E-value=0.0028  Score=45.87  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=43.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      .+.|.+.|+||+|.+|+++|+++|++|......+..  +.+.=.| +++.     .+.+..+.+.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i-~~~~-----~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVI-VTHE-----TSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEE-EEcc-----CCHHHHHHHHHHHH
Confidence            578899999999999999999999999999876543  3333333 3332     12345666666655

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.14  E-value=0.0046  Score=43.81  Aligned_cols=61  Identities=10%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      .+.+.+.|+||+|.+|+.+|+++|++|......+. ++.....++..+.     .+ +..+.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence            46788999999999999999999999999998775 3333333333332     12 34556666554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.14  E-value=0.0037  Score=47.87  Aligned_cols=64  Identities=20%  Similarity=0.337  Sum_probs=46.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ....|.+...|+||+|++|++.|++.|.||.+..+...+. .+.-+..+..   +     ++.++++.+.|.+
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~K   71 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEK   71 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhC
Confidence            4567999999999999999999999999999998876543 3322222221   1     2456777666665

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.12  E-value=0.0029  Score=47.27  Aligned_cols=63  Identities=11%  Similarity=0.159  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEE-EEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d-~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..+.+...|+||.|++|++.|++.|+||.+..+.... ..+.- ++.+..   |    ++..++++.+.|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence            3688999999999999999999999999999998754 33333 333321   2    23556777766665

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.12  E-value=0.0023  Score=45.49  Aligned_cols=45  Identities=13%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~  163 (329)
                      ..+.|..+|+||.|++++..|+++|+||.+..++..++.  .++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            367889999999999999999999999999998776553  344443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.11  E-value=0.0015  Score=44.74  Aligned_cols=46  Identities=9%  Similarity=0.112  Sum_probs=39.6

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEe
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRH  299 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~  299 (329)
                      +++...|+||.|.+++..|.+.|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999987665 67877787755

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.09  E-value=0.0065  Score=43.38  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~  152 (329)
                      +.+.+..+|+||.|+++++.|+++|+||.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            568889999999999999999999999998887775

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.08  E-value=0.0045  Score=52.98  Aligned_cols=63  Identities=11%  Similarity=0.268  Sum_probs=46.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (329)
                      ..+.|.+.|+||++++|+++|+++|+||.+..+....  +...-++.+.    +.    +...++|++.|.+.
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~~----~~~ieqL~kQL~KL   67 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----GD----DRTIEQLTKQLYKL   67 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----CC----HHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999997632  3332233332    11    23367788877773

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.06  E-value=0.0042  Score=45.11  Aligned_cols=61  Identities=15%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHH-HHHHHHHHHH
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEA-ERERVIQCLE  319 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~-~~~~l~~~L~  319 (329)
                      .+.|.+.||||+|++|++.+++.|++|......+.. +.+.=.|-+.-.      +.+ .++.|.++|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~------~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS------TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC------chHHHHHHHHHHHh
Confidence            478899999999999999999999999998865543 455555666432      223 5667776665

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.01  E-value=0.0055  Score=45.04  Aligned_cols=63  Identities=13%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      ..|.+...|+||+|.+|+.+|+..|+||.+..+. |......-...+...      ++...++|...|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999876 333333333333232      13455666666554

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.00  E-value=0.0017  Score=58.35  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=48.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      ..+++++.|+|++|+.+.|++.|+.+|+||.++.-++.  +|++..--.+..  .+.+.    ..+.++..+.. +.+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~-~a~   76 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP-LAE   76 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH-HHH
Confidence            56899999999999999999999999999999999963  244332111111  12322    34667777665 444

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.98  E-value=0.0063  Score=45.01  Aligned_cols=65  Identities=15%  Similarity=0.217  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      +.+.+..+|+||.|++|...|+++|+||.+......+. ...=.|||.-. |. ..+. ..+.+.+.|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~-~~~~-~~~~~l~~l~   67 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH-IEDP-NVAEALEELK   67 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC-CCCH-HHHHHHHHHH
Confidence            45677889999999999999999999999987665543 44557777543 44 2332 3444444444

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.97  E-value=0.0072  Score=43.64  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~  152 (329)
                      -+.+.+.|++|++++++..|+++|+||.+....+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~   36 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA   36 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence            47888999999999999999999999999887654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.96  E-value=0.008  Score=43.60  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=45.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHH-HHHHHHHHHHH
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPK-RLSTIKELLFN  186 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~-~~~~l~~~L~~  186 (329)
                      .+.|.+.|+||++++|++.|+++|+||......+.. +.+.-.|.+...       +.+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            578999999999999999999999999988775533 445556666531       122 55666555554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.95  E-value=0.0097  Score=48.89  Aligned_cols=48  Identities=17%  Similarity=0.195  Sum_probs=40.1

Q ss_pred             EEEEEc---CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194          241 QVTVLN---IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR  288 (329)
Q Consensus       241 ~v~i~~---~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g  288 (329)
                      +|.+.+   .....+.+.|.+.|+||+|++|+++|+++|++|.+....+..
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            444544   344589999999999999999999999999999999877654

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.88  E-value=0.012  Score=41.54  Aligned_cols=35  Identities=11%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~  152 (329)
                      .+.+.+.|+||++++|+.+|+++|++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT   36 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence            46788999999999999999999999999988775

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.86  E-value=0.0096  Score=50.14  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeE-EEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~-~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..++|...|+||.|++|++.|+++|+||.+..+...+ ... .-++.|..        ++...++|.+.|.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~K   65 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhc
Confidence            3688999999999999999999999999999888765 233 34444432        13566777777766

acetohydroxyacid synthase is a synonym.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.85  E-value=0.0035  Score=44.28  Aligned_cols=44  Identities=16%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEE
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYI  297 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v  297 (329)
                      +.|.+.|+||+|.+|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999988765  455556666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.83  E-value=0.0072  Score=44.47  Aligned_cols=61  Identities=11%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeE-EEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~-~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..+.+...|+||.|+++++.|+..|+||.+..+.... +.. .-++.+.+   +      ..++.|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhc
Confidence            5789999999999999999999999999999998743 333 34444421   1      345666666655

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.82  E-value=0.009  Score=42.07  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 020194           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNV   73 (329)
Q Consensus        30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V   73 (329)
                      +.+.++|++|++++++.+|+++|+||.+......  ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            6789999999999999999999999999998764  3676666665

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.79  E-value=0.013  Score=49.64  Aligned_cols=62  Identities=13%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..++|...|+||.|++|++.|+++|+||.+..+....  +...-++.+..        ++..++++...|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhc
Confidence            4688999999999999999999999999998887654  33334444432        23566777777766

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.75  E-value=0.0098  Score=42.00  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT  286 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T  286 (329)
                      +.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            578899999999999999999999999888765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.71  E-value=0.0066  Score=42.49  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=31.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR  288 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g  288 (329)
                      ++.|..+|+||-|++++.+|+++|+||.+......+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            467888999999999999999999999888765443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.70  E-value=0.011  Score=44.23  Aligned_cols=35  Identities=9%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS   62 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t   62 (329)
                      ..++++..|+||.+++++++|+..|+||.+-.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~   37 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH   37 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecc
Confidence            46899999999999999999999999999988873

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.65  E-value=0.013  Score=41.62  Aligned_cols=35  Identities=11%  Similarity=0.164  Sum_probs=31.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG  287 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~  287 (329)
                      .+.+.++|+||.|++|++.|++++++|......+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47788999999999999999999999998887765

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.64  E-value=0.015  Score=42.83  Aligned_cols=61  Identities=11%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T--~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      +.+++...++||.|.+|+..|...|+||.+..+.-  .++...=++-+ + +.      ...+.|...|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-SE------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-CC------chHHHHHHHHhc
Confidence            57899999999999999999999999999999875  34445555555 2 11      235566665543

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.63  E-value=0.0091  Score=45.74  Aligned_cols=37  Identities=11%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 020194           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS   61 (329)
Q Consensus        25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~   61 (329)
                      .+...++++..|+||.++++++.|+..|.||.+-.+.
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg   42 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL   42 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence            3456799999999999999999999999999988876

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.61  E-value=0.017  Score=40.87  Aligned_cols=45  Identities=13%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEE
Q 020194           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNV   73 (329)
Q Consensus        29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~-~g~~~d~F~V   73 (329)
                      ++.+.++|++|.+++++..|+++++||.+....+. ++...-.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            57889999999999999999999999998887764 4554434444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.60  E-value=0.017  Score=48.69  Aligned_cols=62  Identities=11%  Similarity=0.179  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC--eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~--~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      .++.|...|+||.|++|+..|+++|+||.+..+...++  ...=+|.+.   |    ++...+.|...|.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~----d~~~i~qi~kQl~K   65 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G----DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhc
Confidence            46889999999999999999999999999998875553  333344442   2    13456777777654

acetohydroxyacid synthase is a synonym.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.56  E-value=0.0047  Score=44.69  Aligned_cols=72  Identities=21%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--ND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      -|++.|+-||-.|+++|-+|..+|+-|.+|+|..+  ++ +++...++.+ ..+..++.......+.+.+.+.|.+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~-e~~~~~~~~~~r~~i~drv~~~lmg   76 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLL-EHDRLKLGGRQRSKVVDRVTKTLMG   76 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeec-CCCccccchHHHHHHHHHHHHHHhc
Confidence            37889999999999999999999999999999764  23 3444444443 2233354445566777777766643

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.54  E-value=0.018  Score=48.76  Aligned_cols=62  Identities=11%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      .+++|...|+||.|++|+..|+.+|+||.+..+....  +...=+|.+. .      ++...+++...|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~-~------~~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS-G------DEQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE-C------CHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999876444  2333344342 2      23456667666654

>PRK08577 hypothetical protein; Provisional

Probab=96.53  E-value=0.039  Score=45.29  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=45.1

Q ss_pred             EEEEEeCCC--CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEE
Q 020194           16 RVVIDNNTC--ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVI   74 (329)
Q Consensus        16 ~V~v~~~~~--~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~-~g~~~d~F~V~   74 (329)
                      .+.+.+...  .....+.+.+.|+||+|++++++|+++|+||.+....+ . ++.+.-.|.+.
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            455555433  34788999999999999999999999999999888766 3 45555455543

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.51  E-value=0.023  Score=40.03  Aligned_cols=44  Identities=27%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEE
Q 020194           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNV   73 (329)
Q Consensus        30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~-~g~~~d~F~V   73 (329)
                      +.+.++|+||.+++++.+|+++|+||....... . ++...-.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            577899999999999999999999999888765 2 4555444544

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.51  E-value=0.0063  Score=44.02  Aligned_cols=68  Identities=13%  Similarity=0.310  Sum_probs=50.5

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe--cCCe--EEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTE--AYQEFYIRHVDGLPISSEAERERVIQCLEAAI  322 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T--~g~~--~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l  322 (329)
                      +|+.++-||-.+||++-+|..+|+.|.+|.|.-  .+++  ..=.|.+.+. ++.++......++.+.+...+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHHHH
Confidence            688899999999999999999999999999963  2333  2334555555 555766666677777766554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.45  E-value=0.0035  Score=44.59  Aligned_cols=44  Identities=25%  Similarity=0.303  Sum_probs=36.1

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 020194           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (329)
Q Consensus        30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V   73 (329)
                      +++.+.|+||++++++.+|+++|+||......+.+|.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            67899999999999999999999999877655555776655554

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.38  E-value=0.039  Score=39.46  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=37.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V   73 (329)
                      +.+.+..+|+||.+++++.+|+++|+||.+....-  ..+...-.|.+
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v   49 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV   49 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence            57899999999999999999999999999886553  34566555654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.32  E-value=0.04  Score=41.96  Aligned_cols=74  Identities=16%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 020194          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA  326 (329)
Q Consensus       249 ~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~~~  326 (329)
                      ...|.|-+..+|+||-|+++-..|+++|||+.+..-.-... .-+=.|||. .+|+  .++ ..+.+.+.|...|+-..
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~--~~~-~~~~~l~~L~~~~~~~~   86 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK--SAP-ALDPIIKSLRNDIGATV   86 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC--CCH-HHHHHHHHHHHHhCCCC
Confidence            34566667779999999999999999999999887664433 345577774 4565  233 44555566666665433

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.31  E-value=0.042  Score=37.72  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEE
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYI  297 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v  297 (329)
                      |.|.+.|+||++.+|+..|.+++++|....+...+ +...-.|.+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~   45 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL   45 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence            46789999999999999999999999999988766 333334434

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.30  E-value=0.022  Score=40.77  Aligned_cols=44  Identities=20%  Similarity=0.361  Sum_probs=36.4

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (329)
Q Consensus        30 v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V   73 (329)
                      +.+..+|+||.+++++++|+++|+||.+.....  .++...-.|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            467899999999999999999999999887764  45666656665

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.26  E-value=0.051  Score=37.29  Aligned_cols=45  Identities=24%  Similarity=0.473  Sum_probs=35.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEE
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT  163 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~  163 (329)
                      +.+.+.|+||.+..++..|.+++++|.+..+...+ +.....|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            45779999999999999999999999999888765 3333444444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.24  E-value=0.053  Score=40.00  Aligned_cols=48  Identities=27%  Similarity=0.290  Sum_probs=39.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      +.+.+..+|+||.|+++...|+++|+||.+....... +...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            3567778999999999999999999999988877654 35567788865

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.20  E-value=0.0052  Score=43.71  Aligned_cols=44  Identities=20%  Similarity=0.159  Sum_probs=34.7

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI  297 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v  297 (329)
                      +-+.+.|+||+|.+|+..|++.|++|.+....+.++.+.=.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888766555455444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.19  E-value=0.015  Score=40.62  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~  153 (329)
                      ++.|..+|+||-++++++.|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988775543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.16  E-value=0.033  Score=40.17  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~  152 (329)
                      +.+..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778999999999999999999999998876654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.15  E-value=0.061  Score=44.85  Aligned_cols=58  Identities=14%  Similarity=0.070  Sum_probs=46.1

Q ss_pred             EEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEc
Q 020194           18 VIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVID   75 (329)
Q Consensus        18 ~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~   75 (329)
                      -+..........+.+.+.|+||++++++.+|+.+|+||....... .+|.+.-.|.+..
T Consensus        60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            344445567789999999999999999999999999999887765 4576665676644

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=96.12  E-value=0.25  Score=47.98  Aligned_cols=106  Identities=18%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~---~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +...|+|.   ..+++|.++++..+|+++|++|.--... ..... ..|.|...+.     ++..+.|++.+....    
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~~~-Is~~V~~~d~-----~~a~~~L~~~~~~~~----  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSETS-ISLTVDETDA-----DEAVRALKDQSGAAG----  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCCce-EEEEEeHHHH-----HHHHHHHHHHHHhcC----
Confidence            45567777   5788999999999999999999744322 12222 2466532111     233344444331110    


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEE
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~  146 (329)
                        ...  .....+...|.|.|.   ++||+++++..+|+..|+||..
T Consensus       328 --~~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 --LDR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             --Cce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence              000  123346777888875   7899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK04435 hypothetical protein; Provisional

Probab=96.00  E-value=0.075  Score=44.29  Aligned_cols=72  Identities=10%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             EEEc-CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          243 TVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       243 ~i~~-~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      .|+. .......|.+...|+||+|++|.++|++.|+||.....++. ++.+.-.|-+.-.+.     ....+.|.++|+
T Consensus        60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~  133 (147)
T PRK04435         60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR  133 (147)
T ss_pred             CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence            3455 67799999999999999999999999999999998876543 345555666643211     124566666654

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.00  E-value=0.04  Score=39.70  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG  287 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~  287 (329)
                      +.+.-+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5678899999999999999999999988875544

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.99  E-value=0.021  Score=40.85  Aligned_cols=45  Identities=24%  Similarity=0.429  Sum_probs=35.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEE
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVT  163 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~  163 (329)
                      +.+..+|+||.++++++.|+++|+||.+......  ++...-+|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            4578999999999999999999999998877653  34555555553

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.97  E-value=0.026  Score=36.82  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR  288 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g  288 (329)
                      |.+.++|+||++++|+++|+++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK06635 aspartate kinase; Reviewed

Probab=95.89  E-value=0.17  Score=49.22  Aligned_cols=106  Identities=18%  Similarity=0.277  Sum_probs=67.2

Q ss_pred             EEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcce
Q 020194           29 VIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (329)
Q Consensus        29 ~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~  106 (329)
                      .|++. ..+++|.++++..+|+++|+||....... .+|..-..|.|...+.     +...+.|++ +.....     ..
T Consensus       264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~-----~~  332 (404)
T PRK06635        264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIG-----AE  332 (404)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcC-----cc
Confidence            34433 56789999999999999999999654432 3334554676643211     122333333 111110     00


Q ss_pred             eeeecCCCCeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEE
Q 020194          107 SVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNA  147 (329)
Q Consensus       107 ~v~~~~~~~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A  147 (329)
                      .  .....+...+.|.+   ++.||.++++..+|+++|+||...
T Consensus       333 ~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        333 S--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             e--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            0  12233566788876   689999999999999999999764

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=95.71  E-value=0.0076  Score=45.27  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             EEEEEeCC-CccHHHHHHHHHHhCCCcEEEEEEEee---------CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Q 020194          118 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH---------NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (329)
Q Consensus       118 ~i~v~~~D-r~Gll~~i~~~l~~~g~~I~~A~i~t~---------~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (329)
                      +|+|.|+| +.|++++++++|+++|+||.+-+-.+.         ...+...|.|..+    +. +   .+.++..|.+ 
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~-   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLE-   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHH-
Confidence            47899999 999999999999999999976544321         1244566777642    21 2   4778888776 


Q ss_pred             HcCCCC
Q 020194          188 LRGYDD  193 (329)
Q Consensus       188 L~~~~~  193 (329)
                      +..+.+
T Consensus        72 la~elg   77 (84)
T cd04871          72 LASELN   77 (84)
T ss_pred             HhcccC
Confidence            555444

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK07334 threonine dehydratase; Provisional

Probab=95.70  E-value=0.081  Score=51.54  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-----CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-----RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-----g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      ..+.|+|.+.||||+|.+|+++|++.+++|.+....+.     ...+.-.|.|.=      .+.++++.|.+.|+.
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999998764     344444444421      124567777777764

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.69  E-value=0.05  Score=35.43  Aligned_cols=35  Identities=37%  Similarity=0.615  Sum_probs=31.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~  153 (329)
                      |.+.++|++|++++++++|+.+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999887654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK07334 threonine dehydratase; Provisional

Probab=95.69  E-value=0.23  Score=48.37  Aligned_cols=65  Identities=17%  Similarity=0.269  Sum_probs=49.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-----~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      -...|.|.+.||+|+|++|+.+|++.++||.+....+.     ++.+.-.|.|.-       .+.++++++...|++
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999998764     344444444443       134566777777665

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.68  E-value=0.038  Score=39.06  Aligned_cols=54  Identities=11%  Similarity=0.240  Sum_probs=37.0

Q ss_pred             CCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          125 DRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       125 Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      |+||.|.+|++.|...|+||.+..+....  +.....+.+..    .    +...+.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhc
Confidence            68999999999999999999999998843  44444454443    1    1345666666554

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.60  E-value=0.073  Score=38.01  Aligned_cols=47  Identities=28%  Similarity=0.513  Sum_probs=36.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-C-CeEEEEEEEE
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHVT  163 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~-~~~~d~f~V~  163 (329)
                      +.+.+..+|+||.+++++..|+++|+||.+....-. + +.....|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            478889999999999999999999999998865543 2 3334445543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.45  E-value=0.2  Score=36.23  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=43.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +.+..+|+||-|+.+...|+.+|+||.+-......+ ...-.|||.-  +|.. . ....+.+-+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~~-~-~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGHI-D-DPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECCC-C-CHHHHHHHHHHHH
Confidence            345568999999999999999999999886665443 5566788875  2431 1 2344444444444

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.40  E-value=1.5  Score=42.57  Aligned_cols=106  Identities=13%  Similarity=0.170  Sum_probs=67.5

Q ss_pred             CeEEEEEE---eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          115 EHTSIEFT---GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       115 ~~~~i~v~---~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      +...|.|.   ..+++|+++++..+|+++|++|.......  ......|.|..          +..+++.+.|.+.+.. 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~--s~~~Is~~V~~----------~d~~~a~~~L~~~~~~-  325 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP--SETSISLTVDE----------TDADEAVRALKDQSGA-  325 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence            45567777   46789999999999999999997443221  11223455532          1233334444442211 


Q ss_pred             CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHHH
Q 020194          192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDI  268 (329)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I  268 (329)
                      ..       .                                      ..+.++   .+.+++.|.+.   ++||+++++
T Consensus       326 ~~-------~--------------------------------------~~i~~~---~~~a~IsvVG~~~~~~~g~~a~i  357 (401)
T TIGR00656       326 AG-------L--------------------------------------DRVEVE---EGLAKVSIVGAGMVGAPGVASEI  357 (401)
T ss_pred             cC-------C--------------------------------------ceEEEe---CCeEEEEEECCCcccCccHHHHH
Confidence            00       0                                      112222   25677888874   799999999


Q ss_pred             HHHHhcCCeEEEE
Q 020194          269 VCTLTDMQYVVFH  281 (329)
Q Consensus       269 ~~~l~~~~i~I~~  281 (329)
                      .++|++.||+|..
T Consensus       358 ~~~L~~~gIni~~  370 (401)
T TIGR00656       358 FSALEEKNINILM  370 (401)
T ss_pred             HHHHHHCCCcEEE
Confidence            9999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK08210 aspartate kinase I; Reviewed

Probab=95.37  E-value=0.84  Score=44.42  Aligned_cols=99  Identities=18%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCc
Q 020194           26 DATVIKVDSVNK-HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (329)
Q Consensus        26 ~~~~v~v~~~Dr-~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~  104 (329)
                      +...|+|...+. +|.++++..+|+.+|+||.-...+. . .  -+|.+...         ..+.+.+.|.... .    
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~--is~~v~~~---------~~~~a~~~l~~~~-~----  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-E--VVFTVSDE---------DSEKAKEILENLG-L----  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-e--EEEEEcHH---------HHHHHHHHHHHhC-C----
Confidence            455667766555 9999999999999999999664332 2 1  23554321         1122233333321 0    


Q ss_pred             ceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEE
Q 020194          105 RSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (329)
Q Consensus       105 ~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~  146 (329)
                        .+  ....+...|.|.|.   ++||+++++..+|++.|+||..
T Consensus       332 --~v--~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 --KP--SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             --cE--EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence              11  12335667777775   7899999999999999999974

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.34  E-value=0.055  Score=38.24  Aligned_cols=38  Identities=11%  Similarity=0.083  Sum_probs=29.1

Q ss_pred             CCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEE
Q 020194          260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYI  297 (329)
Q Consensus       260 DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v  297 (329)
                      |+||.|.+|+..|...|++|++..+..-.  +...=++-+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v   40 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV   40 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE
Confidence            78999999999999999999999998733  344444433

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.12  E-value=0.12  Score=37.72  Aligned_cols=48  Identities=13%  Similarity=0.153  Sum_probs=35.8

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCC
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDG  302 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g  302 (329)
                      |-+..+|+||-|+++...|+.+|||+.+..-.-... .-+=.||| |.+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            444558999999999999999999999877554433 34557777 4446

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK06291 aspartate kinase; Provisional

Probab=95.08  E-value=1.1  Score=44.59  Aligned_cols=108  Identities=11%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +...|++.+.   +.+|+++++..+|+++|++|.-....+.. . -..|.|...+-     ++..+.|++.+.....   
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse-~-sIsf~V~~~d~-----~~av~~L~~~~~~~~~---  389 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE-S-NISLVVDEADL-----EKALKALRREFGEGLV---  389 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC-c-eEEEEEeHHHH-----HHHHHHHHHHHHHhcC---
Confidence            4567777754   67999999999999999999854333322 1 12365543211     2344455555543110   


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEE
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~  148 (329)
                         ..  .....+...|.|.|.   +++|+.+++..+|+..|+||..-.
T Consensus       390 ---~~--i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        390 ---RD--VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             ---cc--eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence               00  122335677888886   689999999999999999998433

>PRK06635 aspartate kinase; Reviewed

Probab=95.04  E-value=0.34  Score=47.07  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             EEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcc
Q 020194          118 SIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR  195 (329)
Q Consensus       118 ~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  195 (329)
                      .|++. ..++||+++++..+|+++|+||.........+ ...-.|.|..          +..++..+.|.+ +..+..  
T Consensus       264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~--  330 (404)
T PRK06635        264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG--  330 (404)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC--
Confidence            34433 46789999999999999999999543332222 3444555542          222333344443 211111  


Q ss_pred             cccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEe---CCCcchHHHHHHHH
Q 020194          196 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDIVCTL  272 (329)
Q Consensus       196 ~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a---~DrpGLL~~I~~~l  272 (329)
                           +                                      ..|.+.   .+.++++|.+   .++||++++|.++|
T Consensus       331 -----~--------------------------------------~~i~~~---~~ia~isvvG~~~~~~~g~~a~i~~~L  364 (404)
T PRK06635        331 -----A--------------------------------------ESVTYD---DDIAKVSVVGVGMRSHPGVAAKMFEAL  364 (404)
T ss_pred             -----c--------------------------------------ceEEEc---CCeEEEEEECCCCCCCchHHHHHHHHH
Confidence                 0                                      112222   2567788866   68999999999999


Q ss_pred             hcCCeEEEEEE
Q 020194          273 TDMQYVVFHGM  283 (329)
Q Consensus       273 ~~~~i~I~~a~  283 (329)
                      ++.|++|....
T Consensus       365 a~~~Ini~~i~  375 (404)
T PRK06635        365 AEEGINIQMIS  375 (404)
T ss_pred             HHCCCCEEEEE
Confidence            99999998853

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.95  E-value=0.21  Score=35.60  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             EEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       120 ~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      .|.-+|+||-|.+++..++. |.||...+-...+-....+++.-.      ..+++..+++.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            57789999999999999999 999987755543322233333322      1124566777777665

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.91  E-value=0.15  Score=37.22  Aligned_cols=50  Identities=10%  Similarity=0.091  Sum_probs=37.6

Q ss_pred             EEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194          254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP  304 (329)
Q Consensus       254 l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~  304 (329)
                      |-+..+|+||-|+++-..|+.+|+|+.+..-...+ ..-+=.|||. .+|+.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcCH
Confidence            34455899999999999999999999988866543 3455677774 44654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=94.88  E-value=0.97  Score=44.80  Aligned_cols=138  Identities=13%  Similarity=0.136  Sum_probs=80.1

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +.+.|++.+   .+++|+++++..+|+.+|+||.-.   +.+. .-..|.|...+-.    ...+..+...|.....   
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~~~----~a~~~~l~~el~~~~~---  375 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQLT----PKKEDEILAEIKQELN---  375 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHHhh----HHHHHHHHHHHHHhhC---
Confidence            345666663   668899999999999999999864   2222 2235766543211    1111233333332211   


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHH
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLST  179 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~  179 (329)
                        ...  .....+...|.+.|.   +.+|+++++..+|+++|+||......+.  .....|.|..          +..++
T Consensus       376 --~~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e~~Is~vV~~----------~d~~~  439 (454)
T PRK09034        376 --PDE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--EISIMFGVKN----------EDAEK  439 (454)
T ss_pred             --Cce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--cceEEEEEcH----------HHHHH
Confidence              000  122345677888654   7899999999999999999985544332  2233455543          22344


Q ss_pred             HHHHHHHHHcC
Q 020194          180 IKELLFNVLRG  190 (329)
Q Consensus       180 l~~~L~~~L~~  190 (329)
                      ..+.|++.+-+
T Consensus       440 av~~LH~~f~~  450 (454)
T PRK09034        440 AVKAIYNAFFK  450 (454)
T ss_pred             HHHHHHHHHhc
Confidence            45566665543

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.85  E-value=0.23  Score=51.85  Aligned_cols=72  Identities=21%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             EEEEc-CC-CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHH
Q 020194          242 VTVLN-IE-KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQC  317 (329)
Q Consensus       242 v~i~~-~~-~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~  317 (329)
                      |.|+. .+ ...+.|.|.+.||+|||.+|+.++++.++||..+.+.+..  ..+.-.|-|.      +.+.+.+..|...
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~  728 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGK  728 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHH
Confidence            45544 22 3557899999999999999999999999999999988753  4455555443      1234567777777


Q ss_pred             HH
Q 020194          318 LE  319 (329)
Q Consensus       318 L~  319 (329)
                      |+
T Consensus       729 L~  730 (743)
T PRK10872        729 LN  730 (743)
T ss_pred             Hh
Confidence            65

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=94.85  E-value=0.11  Score=43.72  Aligned_cols=40  Identities=18%  Similarity=0.143  Sum_probs=35.1

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCC-EEE
Q 020194           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGG-WFM   68 (329)
Q Consensus        29 ~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g-~~~   68 (329)
                      -+++.+.|+||.|.+++++++++|.||..|+.+. .+| ..+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~   45 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL   45 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE
Confidence            4788999999999999999999999999999997 555 444

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.77  E-value=0.25  Score=35.78  Aligned_cols=62  Identities=11%  Similarity=0.139  Sum_probs=41.5

Q ss_pred             EEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          256 MRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       256 v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      +..+|+||-|++|...|+++|+||.+..-.-. +....=.|||.=. |.. .+ ...+.+.+.|..
T Consensus         4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~~-~~-~~~~~~l~~l~~   66 (75)
T cd04880           4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GHI-DD-PDVKEALEELKR   66 (75)
T ss_pred             EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CCC-CC-HHHHHHHHHHHH
Confidence            44579999999999999999999999864433 3356667777533 531 22 234445555443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.72  E-value=0.41  Score=36.38  Aligned_cols=69  Identities=14%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ..+.+.+..+|+||-|+++...|+.+|+|+.+-...... ..+.-.|||.-  +|. . + ..++.+-+.|.+.|
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~   82 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI   82 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence            346677777999999999999999999999877776653 45567888875  343 1 3 34444444455444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.40  E-value=0.021  Score=42.89  Aligned_cols=62  Identities=16%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             EEEEEeCC-CcchHHHHHHHHhcCCeEEEEEEEE-----ecC----CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          253 VITMRSKD-RPKLLFDIVCTLTDMQYVVFHGMVN-----TGR----TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       253 ~l~v~a~D-rpGLL~~I~~~l~~~~i~I~~a~I~-----T~g----~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      +++|.+.| ++|+++.|+++|+++|+||...+=-     ..+    .+..-.|.|+.+   + .+   .+.|+++|.+.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~---~-~~---~~~lr~~L~~l   72 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ---P-AD---LEALRAALLEL   72 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC---C-CC---HHHHHHHHHHH
Confidence            47889999 9999999999999999999765532     111    245667888743   3 22   35566665543

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.24  E-value=0.36  Score=50.28  Aligned_cols=72  Identities=4%  Similarity=-0.053  Sum_probs=52.0

Q ss_pred             EEEEc--CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 020194          242 VTVLN--IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCL  318 (329)
Q Consensus       242 v~i~~--~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~l~~~~~~~~l~~~L  318 (329)
                      |.++.  .....+.|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|-|.=      .+.+.+..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            45544  2235678999999999999999999999999999999887753 4444444421      2235667777766


Q ss_pred             H
Q 020194          319 E  319 (329)
Q Consensus       319 ~  319 (329)
                      +
T Consensus       689 r  689 (702)
T PRK11092        689 R  689 (702)
T ss_pred             h
Confidence            5

>PRK06291 aspartate kinase; Provisional

Probab=94.11  E-value=4.3  Score=40.38  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          114 EEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       114 ~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      .+...|.|.+.   +.+|+++++..+|+++|++|......+  ....-.|.|..          +..++..+.|.+.+..
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sIsf~V~~----------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNISLVVDE----------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence            34567777764   689999999999999999998643333  22333455543          1223333444443322


Q ss_pred             CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHH
Q 020194          191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFD  267 (329)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~  267 (329)
                      ..        .                                      ..|++.   .+..++.|.+.   +++|++.+
T Consensus       387 ~~--------~--------------------------------------~~i~~~---~~~a~IsvvG~gm~~~~gv~~r  417 (465)
T PRK06291        387 GL--------V--------------------------------------RDVTFD---KDVCVVAVVGAGMAGTPGVAGR  417 (465)
T ss_pred             hc--------C--------------------------------------cceEEe---CCEEEEEEEcCCccCCcChHHH
Confidence            10        0                                      112222   25677888875   79999999


Q ss_pred             HHHHHhcCCeEEEEEE
Q 020194          268 IVCTLTDMQYVVFHGM  283 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~  283 (329)
                      +..+|++.||+|....
T Consensus       418 if~aL~~~~I~v~~is  433 (465)
T PRK06291        418 IFSALGESGINIKMIS  433 (465)
T ss_pred             HHHHHHHCCCCEEEEE
Confidence            9999999999998554

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.86  E-value=0.51  Score=49.14  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             EEEEc--CCCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 020194          242 VTVLN--IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCL  318 (329)
Q Consensus       242 v~i~~--~~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L  318 (329)
                      |.++.  .....+.|.|.+.||+|+|.+|+.++++.++||.+..+.+.. +.+.-.|-|.      +.+.+.+..|...|
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L  672 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI  672 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence            44543  223567899999999999999999999999999999998874 3433333332      12235667777766


Q ss_pred             H
Q 020194          319 E  319 (329)
Q Consensus       319 ~  319 (329)
                      .
T Consensus       673 ~  673 (683)
T TIGR00691       673 K  673 (683)
T ss_pred             h
Confidence            5

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.64  E-value=0.49  Score=49.48  Aligned_cols=65  Identities=18%  Similarity=0.246  Sum_probs=48.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+..  +.+...|.|.-       .+.+.+.+|-..|++
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~  731 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            345788999999999999999999999999999987753  44445555543       123566666666554

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.50  E-value=0.44  Score=49.69  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ...|.|.+.||+|+|++|+.+++..++||.+....+..+ .+...|.|.-       .+.+.+.+|-..|++
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            457889999999999999999999999999999877654 4344454543       123556666555553

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.49  E-value=0.5  Score=34.32  Aligned_cols=46  Identities=11%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      +.+..+|+||-|+++...|+.+|+|+..-...... ....-.|||.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            45556899999999999999999998877666654 34567788875

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=93.46  E-value=3.6  Score=43.92  Aligned_cols=114  Identities=15%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (329)
Q Consensus        25 ~~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~  101 (329)
                      .+...|+|.+.   .++|+++++..+|+++|++|.-....+ +... .+|.|...+.     ....+.|.+.+..+....
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~  385 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKEG  385 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence            35667888754   678999999999999999997544332 2222 2466644221     223444554443221100


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEE
Q 020194          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI  149 (329)
Q Consensus       102 ~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i  149 (329)
                      .  ...  +....+...|.|.|.   +++|+.+++..+|.+.|+||.....
T Consensus       386 ~--~~~--i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        386 L--LEP--LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             C--cce--EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence            0  001  122346778888876   6899999999999999999985543

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.43  E-value=0.4  Score=38.21  Aligned_cols=53  Identities=13%  Similarity=0.093  Sum_probs=39.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCe-EEEEEEEEeCCCCC
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AYQEFYIRHVDGLP  304 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~-~~D~F~v~~~~g~~  304 (329)
                      .|.|-+..+|+||-|+++-..|+.+|||+.+..-...+.. -+=.||| |.+|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            4666666699999999999999999999998886655444 3446666 444543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.40  E-value=0.31  Score=34.48  Aligned_cols=46  Identities=22%  Similarity=0.413  Sum_probs=35.6

Q ss_pred             CCeEEEEEEeC----CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          114 EEHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       114 ~~~~~i~v~~~----Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      .+...|.|.++    |.||++++++..|++.|++|....  |   ...+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            35677888888    799999999999999999998665  3   3456677764

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.34  E-value=0.31  Score=34.50  Aligned_cols=46  Identities=17%  Similarity=0.270  Sum_probs=36.2

Q ss_pred             CeEEEEEEeC----CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          250 DYTVITMRSK----DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       250 ~~t~l~v~a~----DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      .+..|.|.++    |.||+++.++..|++.||+|....  |   .-.|.|.|...
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~~   54 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKEE   54 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEGG
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeHH
Confidence            5677888877    899999999999999999998776  3   45566777544

>PRK11899 prephenate dehydratase; Provisional

Probab=93.13  E-value=0.56  Score=43.36  Aligned_cols=53  Identities=15%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP  304 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~  304 (329)
                      .|.|-+..+|+||.||++..+|+++|||+.+..-.-.+ ..-+=.||| |.+|+.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCC
Confidence            57777777899999999999999999999988866444 445667887 455754

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.11  E-value=0.6  Score=48.28  Aligned_cols=72  Identities=21%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             EEEEc-C-CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEE-EEEEEeCCCCCCCCHHHHHHHHHHH
Q 020194          242 VTVLN-I-EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ-EFYIRHVDGLPISSEAERERVIQCL  318 (329)
Q Consensus       242 v~i~~-~-~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D-~F~v~~~~g~~l~~~~~~~~l~~~L  318 (329)
                      |.++. . ....+-|.|.+.||+|||.+|+++|+..++||......+.+.+... .|-+.      +.+...+..|...|
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l  689 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARL  689 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHH
Confidence            44554 2 4577889999999999999999999999999999998876544333 33221      12234566666665


Q ss_pred             H
Q 020194          319 E  319 (329)
Q Consensus       319 ~  319 (329)
                      .
T Consensus       690 ~  690 (701)
T COG0317         690 K  690 (701)
T ss_pred             h
Confidence            4

>PRK08210 aspartate kinase I; Reviewed

Probab=93.07  E-value=7.2  Score=37.90  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             CeEEEEEEeCCC-ccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194          115 EHTSIEFTGTDR-PGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       115 ~~~~i~v~~~Dr-~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (329)
                      +-..|+|.+.+. +|.+++|..+|+++|+||......  ..  .-.|.+..          +..+++.+.|.+ + + ..
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~--~is~~v~~----------~~~~~a~~~l~~-~-~-~~  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PT--EVVFTVSD----------EDSEKAKEILEN-L-G-LK  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cc--eEEEEEcH----------HHHHHHHHHHHH-h-C-Cc
Confidence            344566665554 999999999999999999876333  11  23455432          122333333333 1 0 00


Q ss_pred             cccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHHHHH
Q 020194          194 FRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDIVC  270 (329)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I~~  270 (329)
                                                                      +.+.   .+..++.|.+.   ++||++.++.+
T Consensus       333 ------------------------------------------------v~~~---~~~a~isvvG~~~~~~~g~~~~i~~  361 (403)
T PRK08210        333 ------------------------------------------------PSVR---ENCAKVSIVGAGMAGVPGVMAKIVT  361 (403)
T ss_pred             ------------------------------------------------EEEe---CCcEEEEEEcCCcCCCccHHHHHHH
Confidence                                                            1111   24566777764   89999999999


Q ss_pred             HHhcCCeEEEEEEEEecCCeEEEEEEEE
Q 020194          271 TLTDMQYVVFHGMVNTGRTEAYQEFYIR  298 (329)
Q Consensus       271 ~l~~~~i~I~~a~I~T~g~~~~D~F~v~  298 (329)
                      +|++.||+|..  +.|  ....=.|.|.
T Consensus       362 aL~~~~I~i~~--~~~--s~~~is~vv~  385 (403)
T PRK08210        362 ALSEEGIEILQ--SAD--SHTTIWVLVK  385 (403)
T ss_pred             HHHhCCCCEEE--Eec--CCCEEEEEEc
Confidence            99999999974  444  2233345553

>TIGR00657 asp_kinases aspartate kinase

Probab=93.04  E-value=5.6  Score=39.20  Aligned_cols=108  Identities=18%  Similarity=0.197  Sum_probs=65.6

Q ss_pred             CeEEEEEEecCC--ccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCC
Q 020194           26 DATVIKVDSVNK--HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (329)
Q Consensus        26 ~~~~v~v~~~Dr--~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~  103 (329)
                      +...|+|.+.+-  +|.++++..+|+.+|++|.-....+.. .. ..|.|...+.     ++..+.|.. +.....    
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~~----  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLSA----  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhcC----
Confidence            455666665433  699999999999999999865432322 22 2466544221     122222222 111110    


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEE
Q 020194          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (329)
Q Consensus       104 ~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~  148 (329)
                       ..  ......+...|.+.|.   +.||+++++..+|+.+|+||....
T Consensus       369 -~~--~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 -LS--SVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             -cc--eEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence             00  1123346777888654   789999999999999999997554

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=93.04  E-value=0.73  Score=33.61  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=37.3

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      +.+..+|+||-|+++...|+.+|+|+..-...... ..+.-.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            45556899999999999999999999877777643 45667888875

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.03  E-value=0.83  Score=32.40  Aligned_cols=60  Identities=13%  Similarity=0.061  Sum_probs=39.5

Q ss_pred             EEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          255 TMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       255 ~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      .|.-+||||=|..++++++. |.||....-.-.+.....++..-.-     .+++..+.+.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-----PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            56779999999999999999 9999877654433222223322221     124567777777654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=93.02  E-value=7.4  Score=38.51  Aligned_cols=120  Identities=15%  Similarity=0.201  Sum_probs=73.9

Q ss_pred             CCeEEEEEEecC---CccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194           25 ADATVIKVDSVN---KHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (329)
Q Consensus        25 ~~~~~v~v~~~D---r~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~  101 (329)
                      .+.+.|++.+..   ++|..+++.++|+.+|+||.--........  .+|.|...+.     ....+.+++.+.....  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            455666666443   459999999999999999974433322222  3576643322     2344444444433221  


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       102 ~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                             ......+.-.|.+.|.   ..||..+++..+|++.|+||....  +  ....-.|.|..
T Consensus       376 -------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s--Se~~Is~vV~~  430 (447)
T COG0527         376 -------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S--SEISISFVVDE  430 (447)
T ss_pred             -------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c--CCceEEEEEcc
Confidence                   1122335566777754   678999999999999999998666  2  23445566643

>PRK09034 aspartate kinase; Reviewed

Probab=92.94  E-value=8.1  Score=38.28  Aligned_cols=122  Identities=14%  Similarity=0.152  Sum_probs=72.5

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       115 ~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      +-+.|++.+   .+++|++++|...|+++|++|...   + .+...-.|.|...   . +. ...+..+...|...+   
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~---~-~~-~a~~~~l~~el~~~~---  374 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRER---Q-LT-PKKEDEILAEIKQEL---  374 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHH---H-hh-HHHHHHHHHHHHHhh---
Confidence            345666664   568999999999999999999865   2 2333455666541   1 10 000022222222111   


Q ss_pred             CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEe---CCCcchHHHH
Q 020194          192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLLFDI  268 (329)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a---~DrpGLL~~I  268 (329)
                       .       .                                      ..|.+.   .+..++.|.+   .++||++.++
T Consensus       375 -~-------~--------------------------------------~~I~~~---~~va~VsivG~g~~~~~gv~ari  405 (454)
T PRK09034        375 -N-------P--------------------------------------DELEIE---HDLAIIMVVGEGMRQTVGVAAKI  405 (454)
T ss_pred             -C-------C--------------------------------------ceEEEe---CCEEEEEEECCCCCCCccHHHHH
Confidence             1       0                                      112222   2557777765   3799999999


Q ss_pred             HHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      ..+|++.||+|....-.+.  ...=.|.|.+
T Consensus       406 f~aL~~~~InV~mIsq~~S--e~~Is~vV~~  434 (454)
T PRK09034        406 TKALAEANINIQMINQGSS--EISIMFGVKN  434 (454)
T ss_pred             HHHHHHCCCCEEEEEecCC--cceEEEEEcH
Confidence            9999999999988754331  2333455543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.86  E-value=0.57  Score=41.33  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=40.8

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEE
Q 020194          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV  162 (329)
Q Consensus       111 ~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V  162 (329)
                      +-......+.+.-.|+||.+..++..|.++|+||-..++....  +.+.-+.-+
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            3444566778888999999999999999999999999998753  444444443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK09181 aspartate kinase; Validated

Probab=92.66  E-value=7.1  Score=38.97  Aligned_cols=104  Identities=16%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +.+.|+|.+.   +.+|+.+++..+|+++|++|.  -+.+..  .-..|.|... ...  ..+..+.|++.+...     
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-~~~--~~~~~~~L~~~~~~~-----  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-LKT--LKRVIAELEKRYPNA-----  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-hHH--HHHHHHHHHHhcCCc-----
Confidence            4566677543   678999999999999999998  223322  2224665332 100  012223333222111     


Q ss_pred             CcceeeeecCCCCeEEEEEEeCC--CccHHHHHHHHHHhCCCcEEEEE
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAE  148 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~D--r~Gll~~i~~~l~~~g~~I~~A~  148 (329)
                          .+  . ..+...|.++|..  +||+.+++..+|++.|+||..-.
T Consensus       396 ----~i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        396 ----EV--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             ----eE--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence                11  1 1467788888765  89999999999999999987433

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.62  E-value=0.7  Score=48.18  Aligned_cols=65  Identities=22%  Similarity=0.230  Sum_probs=47.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.-       .+-.++..|-..|++
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            356788999999999999999999999999999998764 44444444443       123455655555543

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.33  E-value=7.9  Score=41.39  Aligned_cols=114  Identities=13%  Similarity=0.078  Sum_probs=73.3

Q ss_pred             CCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHc
Q 020194          113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (329)
Q Consensus       113 ~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (329)
                      ..+...|.|.+.   .++|+++++..+|+++|++|......+  ......|.|..          +..++....|.+.+.
T Consensus       312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~----------~d~~~av~~L~~~f~  379 (819)
T PRK09436        312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQ----------SDAAKAKRALEEEFA  379 (819)
T ss_pred             eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHHH
Confidence            345667888765   678999999999999999997554333  22334455543          122333344444332


Q ss_pred             CCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHH
Q 020194          190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLF  266 (329)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~  266 (329)
                      .+..       .         .+                          ...|++.   .+..++.|.+.   ++||++.
T Consensus       380 ~el~-------~---------~~--------------------------~~~i~~~---~~valIsvvG~gm~~~~gv~a  414 (819)
T PRK09436        380 LELK-------E---------GL--------------------------LEPLEVE---ENLAIISVVGDGMRTHPGIAA  414 (819)
T ss_pred             HHhc-------c---------CC--------------------------cceEEEe---CCEEEEEEEccCcccCcCHHH
Confidence            1111       0         00                          0123333   36788888875   7999999


Q ss_pred             HHHHHHhcCCeEEEEEE
Q 020194          267 DIVCTLTDMQYVVFHGM  283 (329)
Q Consensus       267 ~I~~~l~~~~i~I~~a~  283 (329)
                      ++..+|.+.||+|....
T Consensus       415 rif~aL~~~~InI~~Is  431 (819)
T PRK09436        415 KFFSALGRANINIVAIA  431 (819)
T ss_pred             HHHHHHHHCCCCEEEEE
Confidence            99999999999998764

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.28  E-value=1.5  Score=32.64  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=37.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ++.|.-+|+||-|++++.+|+  +.||....-.... +.....+.+..+  +.    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence            577889999999999999999  6666644433322 333333333321  10    3556777777665

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=92.07  E-value=12  Score=37.92  Aligned_cols=139  Identities=13%  Similarity=0.125  Sum_probs=79.5

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +.+.|+|.+.   +.+|.++++...|+.+|++|.--.  +..  .-..|.+...+-..  .+.+.+.++..+.....   
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~~---  435 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPSKLWS--RELIQQELDHLVEELEK---  435 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhhc---
Confidence            4567777655   589999999999999999998552  222  22346654432111  01111122222111100   


Q ss_pred             CcceeeeecCCCCeEEEEEEeC--CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHH
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI  180 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~--Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l  180 (329)
                        ...+  .-..+...|.|.|.  ..+|+++++..+|+..|+||..-...+  ......|.|..          +..++.
T Consensus       436 --~~~V--~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga--SeinIS~vV~~----------~d~~~A  499 (521)
T PLN02551        436 --IAVV--NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA--SKVNISLIVND----------DEAEQC  499 (521)
T ss_pred             --CCeE--EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC--CCcEEEEEEeH----------HHHHHH
Confidence              0011  22345667777765  688999999999999999997544333  23334455543          233455


Q ss_pred             HHHHHHHHc
Q 020194          181 KELLFNVLR  189 (329)
Q Consensus       181 ~~~L~~~L~  189 (329)
                      -+.|++.+-
T Consensus       500 v~aLH~~Ff  508 (521)
T PLN02551        500 VRALHSAFF  508 (521)
T ss_pred             HHHHHHHHh
Confidence            556666663

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=91.94  E-value=0.86  Score=41.96  Aligned_cols=54  Identities=11%  Similarity=0.160  Sum_probs=43.2

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP  304 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~  304 (329)
                      ..|.|-+..+|+||-|+++-..|+.+|||+.+..-.-.+ .--.=.||| |.+|+.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCc
Confidence            578888888899999999999999999999988766444 445667777 555665

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.84  E-value=0.62  Score=39.24  Aligned_cols=46  Identities=15%  Similarity=0.429  Sum_probs=37.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC--eEEEEEEEE
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVT  163 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~--~~~d~f~V~  163 (329)
                      -+.+.+.++||.|.++++.++.+|.||..++.+..++  .....|.+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            4678899999999999999999999999999998654  333444443

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.78  E-value=0.94  Score=46.87  Aligned_cols=45  Identities=31%  Similarity=0.420  Sum_probs=38.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEE
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA  158 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d  158 (329)
                      .-...|.|.+.||+|+|++|+.+|+..++||.+....+.++++..
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~  669 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFAT  669 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEE
Confidence            456789999999999999999999999999999998886555443

>PRK11899 prephenate dehydratase; Provisional

Probab=91.75  E-value=1.4  Score=40.79  Aligned_cols=49  Identities=14%  Similarity=0.074  Sum_probs=40.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      .+.+.+..+|+||.|+++...|+.+|+|+.+-...... +-+.-.|||.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            57777777999999999999999999999877777654 44566888875

>PRK06382 threonine dehydratase; Provisional

Probab=91.71  E-value=1.3  Score=43.15  Aligned_cols=67  Identities=16%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe----c-CCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT----G-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T----~-g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      ....+.+.|.-+|+||-|.+|++.|.++|+||.+.....    . .+.+.=+|-|...      +++..+.|.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence            557889999999999999999999999999998776531    1 2345555655432      13344566666554

>PRK06382 threonine dehydratase; Provisional

Probab=91.54  E-value=3.3  Score=40.38  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe----e-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT----H-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t----~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ...+.+.|.-+|+||-|++++..|.++|+||.+.....    . .+...-+|.|...       +++..+.|.+.|++
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            35778999999999999999999999999998876642    2 2344555666431       23444566666654

>PRK06349 homoserine dehydrogenase; Provisional

Probab=91.43  E-value=0.96  Score=44.44  Aligned_cols=51  Identities=12%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      ..+.+.+...|+||.|.+|+.+|.+++++|.+..-....+.....+++++.
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~  397 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE  397 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence            457888999999999999999999999999988654433345567778775

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.24  E-value=1.2  Score=39.25  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEE
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFN   72 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~   72 (329)
                      ....+.+.-.|+||...+++.+|.++|+||-..++..  .+|.++-...
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~  195 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIE  195 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEE
Confidence            4456677779999999999999999999999999986  5677764333

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.90  E-value=0.51  Score=46.13  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=47.8

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ   91 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie   91 (329)
                      ....+.+.-+|+||.+++++.+|+++|+||...+..+.++.++-+|.   .|+. + ++++.+.|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie---~D~~-~-~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVID---VDAD-Y-AEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEE---eCCC-C-cHHHHHHHH
Confidence            56788889999999999999999999999999998888888875554   3443 2 244555555

>PRK09084 aspartate kinase III; Validated

Probab=90.82  E-value=12  Score=36.94  Aligned_cols=102  Identities=15%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +...|+|.+.   +.+|.++++..+|+++|+||.--.  +..  .-.+|.|...+-..-....+.+.+.+.|....    
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~----  376 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQLC----  376 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcCC----
Confidence            4567777654   688999999999999999998554  211  22346654422110000012233333333211    


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCC
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLH  141 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g  141 (329)
                          .+  .-..+...|.+.|.   ++||+++++..+|+..+
T Consensus       377 ----~i--~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~n  412 (448)
T PRK09084        377 ----RV--EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFN  412 (448)
T ss_pred             ----eE--EEECCeEEEEEECCCcccCcChHHHHHHHHHhCC
Confidence                11  22346778888886   68999999999998743

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=90.80  E-value=0.3  Score=40.85  Aligned_cols=43  Identities=14%  Similarity=0.141  Sum_probs=34.3

Q ss_pred             EEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 020194           19 IDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS   61 (329)
Q Consensus        19 v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~   61 (329)
                      +....+-+..++.....+.||+++.+++.++++||+|.++-..
T Consensus        87 vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~  129 (167)
T COG2150          87 VAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE  129 (167)
T ss_pred             HHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence            3334455666777777889999999999999999999987653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.79  E-value=0.6  Score=45.62  Aligned_cols=48  Identities=13%  Similarity=0.104  Sum_probs=41.7

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI  297 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v  297 (329)
                      ....|-+.-.|+||.+..|+.+|+++|+||...+....|+.+.-.|-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            557777789999999999999999999999999999988777666644

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.46  E-value=3.7  Score=30.52  Aligned_cols=61  Identities=10%  Similarity=0.091  Sum_probs=37.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEe-cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T-~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      ++.|.-+||||=|++++.+|+..+|+  ...-.- ..+.+.-.+-+.-.+|     ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~anI~--~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPRNIT--EFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCCcee--EEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHH
Confidence            57788899999999999999955555  322221 1234444444443311     3456667666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=90.25  E-value=0.66  Score=44.65  Aligned_cols=50  Identities=12%  Similarity=0.069  Sum_probs=38.7

Q ss_pred             CeEEEEEEeC-CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          250 DYTVITMRSK-DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       250 ~~t~l~v~a~-DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      .++.|.+.-+ |+||-|++|+.+|+.+||||.+..+ .....-+-.|||.=.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            5677777776 9999999999999999999999998 333333333888533

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=90.19  E-value=1.7  Score=34.55  Aligned_cols=49  Identities=12%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      .+.+.+..+|+||-|+++...|+.+|+|+..-...... ....-.|||.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            46666777999999999999999999999877777654 34456788865

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=89.60  E-value=0.98  Score=40.59  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeE
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA  156 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~  156 (329)
                      ...+|.+...|.||.+++|+++|++.|.||.+.-+.-.....
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~  117 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKA  117 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhh
Confidence            456788889999999999999999999999998877544333

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.10  E-value=1.8  Score=41.50  Aligned_cols=50  Identities=18%  Similarity=0.329  Sum_probs=40.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~  163 (329)
                      ...+.+.|.-+|+||-+++++..|...|+||.+.+|....+...-++.+.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            46789999999999999999999999999999999976544443344443

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=88.95  E-value=2.1  Score=41.50  Aligned_cols=54  Identities=13%  Similarity=0.136  Sum_probs=42.2

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecCCeEEEEEEEEeCCCCC
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTEAYQEFYIRHVDGLP  304 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g~~~~D~F~v~~~~g~~  304 (329)
                      ..|.|-+..+|+||.|+++-..|+..|||+.+..-. +.+..-+=.||| |.+|..
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~  350 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANL  350 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCC
Confidence            356666777899999999999999999999988866 444556678888 455754

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=88.70  E-value=2.7  Score=38.76  Aligned_cols=65  Identities=23%  Similarity=0.288  Sum_probs=47.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..|.+.+..+|+||.|+++.+.|+.+|+|...-...... +-+.-.|||.-  +|.. .+    ..++++|.+
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e  258 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE  258 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence            478888888899999999999999999998776666655 44556788865  3443 33    345555554

>TIGR00657 asp_kinases aspartate kinase

Probab=88.62  E-value=16  Score=35.98  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=29.3

Q ss_pred             CeEEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEE
Q 020194          250 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGM  283 (329)
Q Consensus       250 ~~t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~  283 (329)
                      +.+++.|.+   .++||++++|.++|++.||+|....
T Consensus       377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            567788865   4889999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=88.39  E-value=1.9  Score=36.39  Aligned_cols=66  Identities=15%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      .-.+.+.-.|.||.|+++++.|++.|+||.+..+.... +...-+-.+..   |.    +...+++.+.|.+..
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLi   70 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLI   70 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhc
Confidence            34678888999999999999999999999998887654 33333333333   21    245677777777633

>PLN02551 aspartokinase

Probab=88.34  E-value=31  Score=34.92  Aligned_cols=125  Identities=13%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          114 EEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       114 ~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      .+-+.|+|.+.   +.+|+++++...|+++|++|...  .+.  ...-.|.+...    .+   ...+.+++.+.+.+.+
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS--e~sIs~~v~~~----~~---~~~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS--EVSISLTLDPS----KL---WSRELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc--CCEEEEEEehh----Hh---hhhhhHHHHHHHHHHH
Confidence            34567777655   68999999999999999999865  232  23345666431    11   1123333333332211


Q ss_pred             CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC--CCcchHHHH
Q 020194          191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK--DRPKLLFDI  268 (329)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~--DrpGLL~~I  268 (329)
                       ..                  +          +                ..|.+.   .+..+|.|.+.  .+||++.++
T Consensus       433 -l~------------------~----------~----------------~~V~v~---~~vAiISvVG~~~~~~gvaari  464 (521)
T PLN02551        433 -LE------------------K----------I----------------AVVNLL---QGRSIISLIGNVQRSSLILEKV  464 (521)
T ss_pred             -hh------------------c----------C----------------CeEEEe---CCEEEEEEEccCCCCccHHHHH
Confidence             10                  0          0                112222   25566666653  689999999


Q ss_pred             HHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      ..+|++.||+|......+  ....=.|.|.+
T Consensus       465 F~aLa~~gInV~mIsqga--SeinIS~vV~~  493 (521)
T PLN02551        465 FRVLRTNGVNVQMISQGA--SKVNISLIVND  493 (521)
T ss_pred             HHHHHHCCCCeEEEEecC--CCcEEEEEEeH
Confidence            999999999998765433  23333455543

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.20  E-value=1.5  Score=41.93  Aligned_cols=49  Identities=10%  Similarity=0.130  Sum_probs=40.3

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI  297 (329)
Q Consensus       249 ~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v  297 (329)
                      +.++-+.|.-+||||-|+.|+..|.+.||||.+.+|.-..+...-++.+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~  336 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI  336 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence            4678899999999999999999999999999999997555444333433

>PRK08818 prephenate dehydrogenase; Provisional

Probab=87.69  E-value=1.5  Score=42.34  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=37.9

Q ss_pred             CeEEEEEEeC-CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       115 ~~~~i~v~~~-Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      ..+.+.+.-+ |+||.+++++..|+.+|+||.+-.+ .......-.|+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            4667777776 9999999999999999999999888 32222333388865

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.50  E-value=7.2  Score=26.72  Aligned_cols=44  Identities=14%  Similarity=0.240  Sum_probs=30.8

Q ss_pred             EEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194          118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (329)
Q Consensus       118 ~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~  163 (329)
                      .|.+.|   ++.+|+++++.++|++.|+++......+ . ...-.|.|.
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s-~~~is~~v~   49 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-S-ERNISAVID   49 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-c-ccEEEEEEe
Confidence            466666   4789999999999999999997554333 2 233445554

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=87.48  E-value=13  Score=35.72  Aligned_cols=65  Identities=20%  Similarity=0.275  Sum_probs=44.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe---e--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT---H--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t---~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ....+.|.-+|+||.|++++..++++|.||.+-.-..   .  .+.+.-.+.+...       +++..+.|.+.|.+
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            4568899999999999999999999999998875442   1  2333344444331       13455666666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=87.37  E-value=5.7  Score=28.86  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             EEEEEE---eCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          252 TVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       252 t~l~v~---a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      +.|+|.   ..++||++++|..+|++.||+|....  | ++ ..=.|-|..
T Consensus         2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~   48 (75)
T cd04932           2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN   48 (75)
T ss_pred             EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence            345552   47899999999999999999999884  3 23 344555544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=87.33  E-value=5.8  Score=38.57  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      ......+.|.-+|+||-|+++...++..|.||.+.....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~  362 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR  362 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence            345568999999999999999999999999999887654

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.07  E-value=6.2  Score=27.06  Aligned_cols=46  Identities=9%  Similarity=0.092  Sum_probs=33.2

Q ss_pred             EEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          252 TVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       252 t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      .++.+.+   .+.||++++|.++|++.|+++....-.+.  ...=.|.|..
T Consensus         2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s--~~~is~~v~~   50 (66)
T cd04922           2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS--ERNISAVIDE   50 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--ccEEEEEEeH
Confidence            4566666   48899999999999999999988754432  2334465543

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK06349 homoserine dehydrogenase; Provisional

Probab=87.02  E-value=3.4  Score=40.62  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=41.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      ...+-|.+...|+||.|++|++.|.++|++|.+.......+....+++++.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            356788999999999999999999999999998766554444556667776

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=86.45  E-value=8.8  Score=26.61  Aligned_cols=28  Identities=14%  Similarity=0.470  Sum_probs=24.6

Q ss_pred             EEEEEeC---CCccHHHHHHHHHHhCCCcEE
Q 020194          118 SIEFTGT---DRPGLFSEVCAVLADLHCNVV  145 (329)
Q Consensus       118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~  145 (329)
                      .|.+.|.   +.||+++++..+|.+.|++|.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            4677775   789999999999999999995

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=86.09  E-value=4.4  Score=39.32  Aligned_cols=50  Identities=12%  Similarity=0.104  Sum_probs=40.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      ..+.+.+..+|+||.|+++...|+.+|+|+..-...... +.+.-.|||.-
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~  346 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV  346 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence            356677777899999999999999999998877777544 44677888875

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=86.05  E-value=30  Score=37.02  Aligned_cols=103  Identities=15%  Similarity=0.092  Sum_probs=64.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +.+.|++.+.   +.+|.++++..+|+.+|++|.--...+. +. ...|.+...         ....+.+.|..... . 
T Consensus       316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~~---------~~~~~~~~l~~~~~-~-  382 (810)
T PRK09466        316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTSE---------VADSALKLLDDAAL-P-  382 (810)
T ss_pred             CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeHH---------HHHHHHHHHHhhcC-C-
Confidence            4556777665   7788999999999999999975443322 22 223544321         11122222322110 0 


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEE
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~  146 (329)
                         ..+  .-..+...|.|+|.   .++|+.+++..+|.+.|+++..
T Consensus       383 ---~~i--~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~  424 (810)
T PRK09466        383 ---GEL--KLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW  424 (810)
T ss_pred             ---CcE--EEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence               111  22346778888885   5899999999999999999853

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=85.89  E-value=29  Score=37.44  Aligned_cols=103  Identities=11%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~---~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +.+.|++.   ..+.+|.++++...|+.+|+||.--  .+.. . -.+|.+.+.+.. . ..+..+.+...|....    
T Consensus       321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse-~-sis~~i~~~~~~-~-~~~~~~~l~~~l~~~~----  390 (861)
T PRK08961        321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE-T-NVTVSLDPSENL-V-NTDVLAALSADLSQIC----  390 (861)
T ss_pred             CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC-C-EEEEEEcccccc-c-hHHHHHHHHHHHhhcC----
Confidence            45566774   3468899999999999999999644  2222 1 123554332211 0 1123333333343211    


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcE
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNV  144 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I  144 (329)
                          .+.  ...+...|.|+|.   .++|+.+++..+|+..|+++
T Consensus       391 ----~i~--~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        391 ----RVK--IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             ----cEE--EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence                111  1235678888886   78999999999999977654

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=85.70  E-value=8.3  Score=26.54  Aligned_cols=46  Identities=11%  Similarity=0.054  Sum_probs=33.1

Q ss_pred             EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      .++.+.+.   ++||+++++.++|++.|+++....-.+.+  ..=.|.+.+
T Consensus         2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~   50 (66)
T cd04919           2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDE   50 (66)
T ss_pred             eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence            45666664   78999999999999999999887654422  333455543

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=85.52  E-value=1.3  Score=39.83  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEE
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFM   68 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~   68 (329)
                      ....+.+..-|.||.+.+|+|+|+..|.||.+--+.-.....+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L  118 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL  118 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence            4567888889999999999999999999999887764333333

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.29  E-value=3.6  Score=34.69  Aligned_cols=38  Identities=13%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-ecC
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDG   64 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t~~   64 (329)
                      ...+.+.-.|.||.++++++.|+..|+||.+-.+. |++
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~   42 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTET   42 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCC
Confidence            45788899999999999999999999999988876 533

>PLN02317 arogenate dehydratase

Probab=85.03  E-value=4.9  Score=38.77  Aligned_cols=39  Identities=15%  Similarity=0.162  Sum_probs=32.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCC
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT  289 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~  289 (329)
                      .|.|-+.-.|+||-|+++-.+|+.+|||+.+..-.-...
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~  321 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRK  321 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCC
Confidence            466777778999999999999999999999887654433

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=84.94  E-value=8.6  Score=36.98  Aligned_cols=66  Identities=12%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             CCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE---e--cCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN---T--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       249 ~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~---T--~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      .....+.|.-+||||.|.++++.+++.|.||....-.   .  .-+.+.=.+-+.-.      +++..+.|.+.|.+
T Consensus       303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR------GKEHLDEILKILRD  373 (380)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence            4556899999999999999999999999999877543   1  12344444544322      13455667776654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=84.87  E-value=11  Score=27.32  Aligned_cols=56  Identities=9%  Similarity=-0.008  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          259 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       259 ~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      .+.||++++|.++|++.||+|....  + ++ ..=.|-|...+ .-+.+ +..++|.+.|..
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~-~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDP-DVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccch-HHHHHHHHHHHh
Confidence            5889999999999999999999884  3 33 33345554332 11332 356677777655

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=84.59  E-value=9  Score=37.22  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE
Q 020194          248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN  285 (329)
Q Consensus       248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~  285 (329)
                      ......+.|.-+|+||-|.++...+++.|.||......
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            45667999999999999999999999999999888765

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=83.89  E-value=12  Score=25.79  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      .|.+.|.   +++|+++++.++|++.|+++......+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            4666665   689999999999999999997554433

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=83.53  E-value=10  Score=26.24  Aligned_cols=43  Identities=12%  Similarity=0.186  Sum_probs=30.7

Q ss_pred             EEEEEEeC---CCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEE
Q 020194          252 TVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR  298 (329)
Q Consensus       252 t~l~v~a~---DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~  298 (329)
                      ..+.|.+.   +.||++.++..+|.+.|+++.  .++|  ....=.|.|.
T Consensus         2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~--Se~~is~~v~   47 (64)
T cd04937           2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD--SHTTISCLVS   47 (64)
T ss_pred             eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc--CccEEEEEEc
Confidence            35666664   899999999999999999995  3344  2333346553

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=83.32  E-value=7.2  Score=27.20  Aligned_cols=41  Identities=22%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             eCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEE
Q 020194          123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT  163 (329)
Q Consensus       123 ~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~  163 (329)
                      .+|.+|.++++...|++.|++|.........+ .....|.+.
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~   50 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP   50 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence            47899999999999999999998554332222 233445554

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.93  E-value=3.2  Score=41.95  Aligned_cols=51  Identities=22%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEE
Q 020194          112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV  162 (329)
Q Consensus       112 ~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V  162 (329)
                      -......+.+...|+||.++.++..|..+|+||...++....  +.+.-++-+
T Consensus       448 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        448 AKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             eeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            334556667777999999999999999999999999988643  444444433

>PRK08526 threonine dehydratase; Provisional

Probab=82.65  E-value=28  Score=33.90  Aligned_cols=66  Identities=17%  Similarity=0.298  Sum_probs=46.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-----~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      .....+.|.-+|+||-|++++..+...+.||.+..-....     +.+...+-+..       .+++..++|.+.|.+
T Consensus       324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~  394 (403)
T PRK08526        324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE  394 (403)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999987665432     22222233322       135667777777654

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=81.89  E-value=9.6  Score=25.98  Aligned_cols=38  Identities=16%  Similarity=0.027  Sum_probs=30.1

Q ss_pred             CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          259 KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       259 ~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      .+++|+.++|.++|++.|+++....  | ++ ..=.|++...
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~   48 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDS   48 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehh
Confidence            5789999999999999999999883  3 23 5556777653

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK09181 aspartate kinase; Validated

Probab=81.70  E-value=35  Score=34.12  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=65.6

Q ss_pred             CeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          115 EHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       115 ~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      +.+.|.|.+.   +.+|+.++|..+|+++|++|.  .+.+.  .....|.|..    .    ...++++.+.|.+.+.. 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss--~~sis~~v~~----~----~~~~~~~~~~L~~~~~~-  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN--ANTITHYLWG----S----LKTLKRVIAELEKRYPN-  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec--CcEEEEEEcC----C----hHHHHHHHHHHHHhcCC-
Confidence            4566677544   689999999999999999997  23332  2334555543    1    12233333333322210 


Q ss_pred             CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCC--CcchHHHHH
Q 020194          192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD--RPKLLFDIV  269 (329)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~D--rpGLL~~I~  269 (329)
                                                                      ..+..    ....++.|.+..  +||+..++.
T Consensus       395 ------------------------------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f  422 (475)
T PRK09181        395 ------------------------------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAV  422 (475)
T ss_pred             ------------------------------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHH
Confidence                                                            01111    245666676643  899999999


Q ss_pred             HHHhcCCeEEEEEEE
Q 020194          270 CTLTDMQYVVFHGMV  284 (329)
Q Consensus       270 ~~l~~~~i~I~~a~I  284 (329)
                      .+|++.||+|....-
T Consensus       423 ~aL~~~~Ini~~i~q  437 (475)
T PRK09181        423 QALAEAGINVLALHQ  437 (475)
T ss_pred             HHHHHCCCCeEEEEe
Confidence            999999999976543

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=80.42  E-value=16  Score=24.92  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             EEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEE
Q 020194          118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (329)
Q Consensus       118 ~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~  163 (329)
                      .|.+.|.   +.+|+++++...|+++|+++.-....+. + ..-.|.+.
T Consensus         3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s-~-~~isf~i~   49 (66)
T cd04924           3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS-E-YNISFVVA   49 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEe
Confidence            4566664   6789999999999999999975544332 2 23345554

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=80.42  E-value=13  Score=26.73  Aligned_cols=63  Identities=11%  Similarity=0.076  Sum_probs=38.3

Q ss_pred             EEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          252 TVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       252 t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      +.+.|.+   .+.||++++|..+|++.|+++...-  +.+  ..=.|.|...  ....+....++|.+.|..
T Consensus         2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~~--~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912           2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDPT--KNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEch--hhccchHHHHHHHHHHHh
Confidence            3455543   5789999999999999999997663  322  3334555432  222212244555555543

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>TIGR02079 THD1 threonine dehydratase

Probab=80.13  E-value=37  Score=33.10  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=44.1

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t-~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      +.....+.+.-+||||-|.+++..+...+.||..-+-.. .+-....++....      ..+++..++|.+.|.+
T Consensus       322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~  390 (409)
T TIGR02079       322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIE------LNDKEDFAGLLERMAA  390 (409)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            345678899999999999999997777888999655442 2222222322222      1124566777777765

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1u8s_A	192	Glycine cleavage system transcriptional repressor,	4e-07
1u8s_A	192	Glycine cleavage system transcriptional repressor,	1e-05
2nyi_A	195	Unknown protein; protein structure initiative, PSI	2e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 2e-13
 Identities = 58/376 (15%), Positives = 114/376 (30%), Gaps = 113/376 (30%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           +D  +       +  ++ I +       ++K     ++ +L     VL +V         
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCLL-----VLLNV--------- 253

Query: 61  SSDGGWFMDVFNVIDCDGKKI----RDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEH 116
             +     + FN + C   KI    R K+V D++     T                + +H
Sbjct: 254 -QNA-KAWNAFN-LSC---KILLTTRFKQVTDFLSAATTTH--------------ISLDH 293

Query: 117 TSIEFTGTDRPGLFS------------EVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
            S+  T  +   L              EV         +++   I           HV  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLS--------PPGIMNRERRLHQI 216
                      +L+TI E   NVL    ++RK    LS        P  ++        +
Sbjct: 353 ----------DKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILL-------SL 394

Query: 217 MFDDRDYERVEKAVGRVEDKS---SRPQVTVLNIEKDYTVITMRSKDRPKL--------- 264
           ++ D     V   V ++   S    +P+ + ++I   Y  + ++ ++   L         
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 265 ------LFDIVCTLTDM---QYVVFHGMVNTGRTEAYQEF---Y---------IRHVDGL 303
                   D++    D     ++  H + N    E    F   +         IRH D  
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRH-DST 512

Query: 304 PISSEAERERVIQCLE 319
             ++       +Q L+
Sbjct: 513 AWNASGSILNTLQQLK 528

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 17/134 (12%), Positives = 43/134 (32%), Gaps = 31/134 (23%)

Query: 180 IKELLFNVL--RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK- 236
           ++++  ++L     D        +     ++   RL   +   ++ E V+K V  V    
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRIN 90

Query: 237 --------SSRPQVTVLNIEK----------DYTVITMRSKDRPKLLFDI---VCTLTDM 275
                    +  +   +              D  V    +  R +    +   +  L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 276 QYVVFHGMVNTGRT 289
           + V+  G++ +G+T
Sbjct: 151 KNVLIDGVLGSGKT 164

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 2/129 (1%)

Query: 29  VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVID 88
           VI     ++ GI  +V++++      I  + I+  G  F  +  +        R +  + 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 89  YIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148
            + Q+   D        S            +     D+ GL  +     A     + +  
Sbjct: 68  LLGQQH--DLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125

Query: 149 IWTHNDRAA 157
             T +    
Sbjct: 126 AQTISKDKL 134

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           M   +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 1   MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 29  VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVID 88
           V+ V   ++ GI+      L +++  ++ + ++  GG F  +  V          +  ++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 89  YIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148
                 +     A S+        T E+  +   G D  G+   V AVLA    N+V  E
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYE-LYVEGPDSEGIVEAVTAVLAKKGANIVELE 125

Query: 149 IWTHND 154
             T   
Sbjct: 126 TETLPA 131

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
             I   G D+ G+ +++  V++    N+    +   +      + +        +K+  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 177 LSTI 180
           L+T+
Sbjct: 59  LTTL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.7
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.96
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.94
2f06_A	144	Conserved hypothetical protein; structural genomic	98.58
2f06_A	144	Conserved hypothetical protein; structural genomic	98.4
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.26
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.25
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.14
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.94
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.82
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.79
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.77
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.76
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.75
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.67
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.65
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.65
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.59
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.59
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.58
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.43
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.34
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.33
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.32
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.27
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.24
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.17
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.17
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	97.15
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.14
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.01
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.92
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.74
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.54
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.32
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.31
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.23
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.19
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.17
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.1
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.95
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.84
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.43
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.41
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.56
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	93.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.48
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.2
3luy_A	329	Probable chorismate mutase; structural genomics, A	90.7
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.68
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	90.39
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.27
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	89.74
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	89.64
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	89.46
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.03
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	88.91
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	88.65
3luy_A	329	Probable chorismate mutase; structural genomics, A	88.61
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	88.36
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	88.02
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	87.72
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	86.22
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	85.28

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=2.5e-18  Score=149.37  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=117.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCc
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDF  194 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (329)
                      ..++|+|+|+|||||++.|+++|+++|+||++|++++..+++...|.|..+  +.  ..+.+++.|++.|..++.+ .. 
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~-~~-   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIS-TR-   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEE-EE-
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHh-cC-
Confidence            467999999999999999999999999999999999999998888888763  21  1233456565555432211 11 


Q ss_pred             ccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhc
Q 020194          195 RKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTD  274 (329)
Q Consensus       195 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~  274 (329)
                            +        .          +.+.          .   .+.    ..+...++|+|.|+|||||++.|+++|++
T Consensus        78 ------~--------~----------~~~~----------~---~~~----~~~~~~~iltv~g~DrpGiva~Vt~~La~  116 (195)
T 2nyi_A           78 ------R--------A----------SSVA----------E---RHV----SPDTREYELYVEGPDSEGIVEAVTAVLAK  116 (195)
T ss_dssp             ------E--------C----------CCC-----------------C----CTTEEEEEEEEEEECCTTHHHHHHHHHHH
T ss_pred             ------C--------e----------EEEE----------e---CCc----CCCCcEEEEEEEeCCCcCHHHHHHHHHHH
Confidence                  0        0          0000          0   010    23446799999999999999999999999


Q ss_pred             CCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194          275 MQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  324 (329)
Q Consensus       275 ~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  324 (329)
                      +|+||..++..|.+  ++..+.||++-.-+-+  +... +.|++.|.....+
T Consensus       117 ~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a~~  165 (195)
T 2nyi_A          117 KGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVEEE  165 (195)
T ss_dssp             TTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHHHH
T ss_pred             cCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHHHH
Confidence            99999999999998  7889999998665433  2234 7788887765543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=7.6e-18  Score=146.33  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC---CC
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA  101 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~---~~  101 (329)
                      ...+|+|+|+||||||++++++|+.+|+||++|++++ .+++++ .|.|..+..   ......+.|++.|.....   ..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK---DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS---SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc---cchhHHHHHHHHHHHHHHhcCCe
Confidence            4579999999999999999999999999999999997 445555 777754421   112345667777754321   11


Q ss_pred             CCcceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHH
Q 020194          102 PSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLST  179 (329)
Q Consensus       102 ~~~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~  179 (329)
                      ...+..-. ......++|+|.|+|||||++.|+++|+++|+||.+++.+|.+  ++..+.|++.. ..+.+  +... +.
T Consensus        80 ~~~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~-~~  154 (195)
T 2nyi_A           80 SSVAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY-QE  154 (195)
T ss_dssp             CCC----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH-HH
T ss_pred             EEEEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc-HH
Confidence            00000001 2334678999999999999999999999999999999999986  55567787766 22222  2234 77


Q ss_pred             HHHHHHHHH
Q 020194          180 IKELLFNVL  188 (329)
Q Consensus       180 l~~~L~~~L  188 (329)
                      |++.|....
T Consensus       155 l~~~l~~~a  163 (195)
T 2nyi_A          155 VVTALSRVE  163 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887643

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.75  E-value=3e-17  Score=142.10  Aligned_cols=160  Identities=16%  Similarity=0.195  Sum_probs=117.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCc
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDF  194 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (329)
                      ..++|+|+|+||||++++|+++|+++|+||.++++++..+.+...+.|..+        ...+++|++.|...+ ++.++
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~-~~~~~   75 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLG-QQHDL   75 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHH-HHHTC
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHH-HhcCC
Confidence            357899999999999999999999999999999999998988888888752        146788888888755 32221


Q ss_pred             ccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhc
Q 020194          195 RKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTD  274 (329)
Q Consensus       195 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~  274 (329)
                                     ..+++..    .                .++    ...+...++|+|.++||||++++|+++|++
T Consensus        76 ---------------~~~~~~~----~----------------~~~----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~  116 (192)
T 1u8s_A           76 ---------------ITMMKRT----S----------------PHD----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQ  116 (192)
T ss_dssp             ---------------EEEEEEE----C----------------CCC----CCCCSEEEEEEEEESCCTTHHHHHHHHHHH
T ss_pred             ---------------EEEEEeC----C----------------CCC----CccCCceEEEEEEeCCCccHHHHHHHHHHH
Confidence                           0111100    0                011    014457799999999999999999999999


Q ss_pred             CCeEEEEEEEEecCC----eEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhh
Q 020194          275 MQYVVFHGMVNTGRT----EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER  324 (329)
Q Consensus       275 ~~i~I~~a~I~T~g~----~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~l~~  324 (329)
                      +|+||..++..|.++    +..+.||++-.-+-+  +....+.|++.|.+...+
T Consensus       117 ~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~  168 (192)
T 1u8s_A          117 RQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTA  168 (192)
T ss_dssp             TTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHH
T ss_pred             cCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHH
Confidence            999999999999985    689999997654322  112356777777765543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.70  E-value=3.9e-16  Score=135.09  Aligned_cols=155  Identities=12%  Similarity=0.094  Sum_probs=104.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcce
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~  106 (329)
                      ..+|+|+|+||||+|++++++|+.+|+||+++++++..|.+.-.|.|..+. .  ...++.+.|+..+.. ........+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~--~~~~l~~~L~~~~~~-~~~~~~~~~   81 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-S--NITRVETTLPLLGQQ-HDLITMMKR   81 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-H--HHHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-C--CHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            578999999999999999999999999999999998666655578775432 1  112344444443321 111100000


Q ss_pred             e--eeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC----eEEEEEEEEeCCCCCCCCCHHHHHHH
Q 020194          107 S--VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND----RAAAVVHVTDHSTGYAIKDPKRLSTI  180 (329)
Q Consensus       107 ~--v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~----~~~d~f~V~~~~~g~~~~~~~~~~~l  180 (329)
                      .  -........++|+|.|+||||++++|+++|+++|+||.+++..|.+.    +..+.|++... .+.+  +....+.|
T Consensus        82 ~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~~~~l  158 (192)
T 1u8s_A           82 TSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCNLMQL  158 (192)
T ss_dssp             ECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSCHHHH
T ss_pred             CCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCCHHHH
Confidence            0  00123346789999999999999999999999999999999999763    45677877662 2221  12245778


Q ss_pred             HHHHHHHH
Q 020194          181 KELLFNVL  188 (329)
Q Consensus       181 ~~~L~~~L  188 (329)
                      ++.|....
T Consensus       159 ~~~l~~~~  166 (192)
T 1u8s_A          159 QEEFDALC  166 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887643

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.96  E-value=4.1e-08  Score=94.16  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=98.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCc
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDF  194 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (329)
                      ..++|+|.|+||||+.+.|+++|+++|+||.++..++.++.+.....+.-+  +.    ....+.|++.|.. +.++.++
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~----~~~~~~l~~~l~~-~~~~~~~   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--AD----VADGPALRHDVEA-AIRKVGL   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HH----HHTSHHHHHHHHH-HHHHTTC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CC----cCCHHHHHHHHHH-HHHHcCe
Confidence            467899999999999999999999999999999999988887766656542  11    0023677777765 4443332


Q ss_pred             ccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCC-CcchHHHHHHHHh
Q 020194          195 RKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD-RPKLLFDIVCTLT  273 (329)
Q Consensus       195 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~D-rpGLL~~I~~~l~  273 (329)
                                     .-+++.     .  .             .++++    ....+.++++.+.| +||++.+|+.+++
T Consensus        84 ---------------~~~~~~-----~--~-------------~~~~~----~~~~~~~~~llg~~~~~~~~~~i~~~l~  124 (415)
T 3p96_A           84 ---------------DVSIER-----S--D-------------DVPII----REPSTHTIFVLGRPITAAAFGAVAREVA  124 (415)
T ss_dssp             ---------------EEEEEE-----C--S-------------SSCSS----CCCCSEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             ---------------EEEEEE-----C--C-------------ccccc----CCCCcEEEEEEeCCCCHHHHHHHHHHHH
Confidence                           011110     0  0             00100    23467889999999 9999999999999


Q ss_pred             cCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          274 DMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       274 ~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      ++|+||...+.-+......=.|++.-.
T Consensus       125 ~~~~Ni~~l~~~~~~~~~~~~~~v~~~  151 (415)
T 3p96_A          125 ALGVNIDLIRGVSDYPVIGLELRVSVP  151 (415)
T ss_dssp             HTTCEEEEEEEEESSSSEEEEEEEECC
T ss_pred             HcCCCccceeeccCCCceEEEEEeeCC
Confidence            999999998877743434444777433

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.94  E-value=3.8e-08  Score=94.36  Aligned_cols=133  Identities=12%  Similarity=0.050  Sum_probs=91.9

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcc
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLR  105 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~  105 (329)
                      ...+|++.|+||||+.+.++++|+++|+||++.+.+..+|.+.-...+.-+.+. .+..++.+.++.. .......    
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~~~~l~~~l~~~-~~~~~~~----   84 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-ADGPALRHDVEAA-IRKVGLD----   84 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HTSHHHHHHHHHH-HHHTTCE----
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CCHHHHHHHHHHH-HHHcCeE----
Confidence            457899999999999999999999999999999999877766544444322211 1113344444432 2211111    


Q ss_pred             eeeee------cCCCCeEEEEEEeCC-CccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          106 SSVGV------MPTEEHTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       106 ~~v~~------~~~~~~~~i~v~~~D-r~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      ..+..      .....+..+++.+++ ++|++.+|+.+++.+|+||.+.+..+....+.-.|++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           85 VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             EEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence            01110      133467889999999 999999999999999999998888774444445577754

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.58  E-value=3e-06  Score=69.10  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCcce
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~~~  106 (329)
                      ..+++|..+|+||.++++++.|++.|+||..-.+....+..+-.|.+.    .   .+...+.|++.  +..        
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~----d---~~~a~~~L~~~--G~~--------   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS----D---PDKAYKALKDN--HFA--------   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES----C---HHHHHHHHHHT--TCC--------
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC----C---HHHHHHHHHHc--CCe--------
Confidence            358899999999999999999999999999877653222122235421    1   12333333321  110        


Q ss_pred             eeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEE
Q 020194          107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV  160 (329)
Q Consensus       107 ~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f  160 (329)
                       +     ....++.+..+|+||.+++++++|+++|+||.....+..++...-+|
T Consensus        69 -v-----~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           69 -V-----NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             -E-----EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             -E-----eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence             0     01246777899999999999999999999998776653334444343

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.40  E-value=1.6e-05  Score=64.77  Aligned_cols=113  Identities=16%  Similarity=0.069  Sum_probs=74.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCCcc
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFR  195 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  195 (329)
                      ...|+|..+|+||.++++++.|+++|+||..-.+....+.-.-.|.+.         ++   ++.++.|.+.  + ..  
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~---~~a~~~L~~~--G-~~--   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DP---DKAYKALKDN--H-FA--   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CH---HHHHHHHHHT--T-CC--
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CH---HHHHHHHHHc--C-Ce--
Confidence            357888999999999999999999999999877764333111223221         22   3333334331  1 00  


Q ss_pred             cccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCCCcchHHHHHHHHhcC
Q 020194          196 KAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDM  275 (329)
Q Consensus       196 ~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~DrpGLL~~I~~~l~~~  275 (329)
                           .                                      .         .+.++-+.-+|+||.+++++++|++.
T Consensus        69 -----v--------------------------------------~---------~~svv~v~~~d~pGvla~i~~~L~~~   96 (144)
T 2f06_A           69 -----V--------------------------------------N---------ITDVVGISCPNVPGALAKVLGFLSAE   96 (144)
T ss_dssp             -----E--------------------------------------E---------EEEEEEEEEESSTTHHHHHHHHHHHT
T ss_pred             -----E--------------------------------------e---------eeeEEEEEeCCCCcHHHHHHHHHHHC
Confidence                 0                                      0         11456667789999999999999999


Q ss_pred             CeEEEEEEEEecCCeEEEEEEE
Q 020194          276 QYVVFHGMVNTGRTEAYQEFYI  297 (329)
Q Consensus       276 ~i~I~~a~I~T~g~~~~D~F~v  297 (329)
                      ||||.+......+.++.-.|-+
T Consensus        97 ~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           97 GVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             TCCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEEccCCcEEEEEEe
Confidence            9999776654234455444533

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.26  E-value=6.3e-06  Score=61.52  Aligned_cols=65  Identities=14%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..+.|.|.++||||++++|+++|+++|+||.+....+..+.+.-.+.+.-+  + .    ..++.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-~----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-K----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-C----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-C----CCHHHHHHHHHH
Confidence            457899999999999999999999999999999999887776666666542  2 1    235777777776

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.25  E-value=9.5e-06  Score=60.54  Aligned_cols=65  Identities=15%  Similarity=0.125  Sum_probs=49.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      ....|+|.++||||++++++++|+++|+||.+.+..+.+|.+.-.+.+.-++..  .-.++.+.|++
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~--~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ--DFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCC--CHHHHHHHHHH
Confidence            356899999999999999999999999999999998866877666766433322  11345555544

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.14  E-value=1.3e-05  Score=59.23  Aligned_cols=64  Identities=9%  Similarity=0.031  Sum_probs=49.7

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      ..+.|.|.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.-.      +.+..+++.+.|.
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC------CHHHHHHHHHHHh
Confidence            457899999999999999999999999999999998876666666655433      2344566666554

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.94  E-value=5.7e-05  Score=55.60  Aligned_cols=49  Identities=12%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      .+.|.|.+.||||++++|+++|++.|+||.+..+.+.++.+...|.+..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~   53 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence            5678899999999999999999999999999999886664445555543

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.82  E-value=0.0011  Score=60.27  Aligned_cols=117  Identities=10%  Similarity=0.047  Sum_probs=70.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCCc
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~~  104 (329)
                      ..++++.|+||||+.+++++.|+++|+||.+.+.++  ..|.++-...+.-+++ ..+..++.+.++.. ..+..    +
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~~l-a~~~~----m   79 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFGVI-AAKFT----M   79 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHHHH-HHHTT----C
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHHHH-HHHcC----C
Confidence            468999999999999999999999999999999985  4576654444433332 12223444444432 22211    1


Q ss_pred             ceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       105 ~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                        .+..........|-|....+---|..|......-.+++.=+-+.+
T Consensus        80 --~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           80 --GWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             --EEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             --EEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence              122211122334444444444467788777777667654444444

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.79  E-value=0.00022  Score=59.57  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=75.1

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           25 ADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYIS-SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        25 ~~~~~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      .+...|+|. .+|+||.++++..+|+++|+||.--... +.+|.....|.|...+.     ++..+.|++ +..+...  
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~--   94 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA--   94 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC--
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC--
Confidence            367888888 5999999999999999999999865543 23465555687643211     223333333 2222210  


Q ss_pred             CcceeeeecCCCCeEEEEEEeCC---CccHHHHHHHHHHhCCCcEEEE
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVNA  147 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~D---r~Gll~~i~~~l~~~g~~I~~A  147 (329)
                         ..+  ....+...|.|.|.+   +||+++++..+|+++|+||...
T Consensus        95 ---~~i--~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           95 ---ASI--DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             ---SEE--EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             ---ceE--EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence               111  123467889999987   9999999999999999999873

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.77  E-value=0.00075  Score=61.69  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEE
Q 020194           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVI   74 (329)
Q Consensus        25 ~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V~   74 (329)
                      ....++++.|+||||+.+++++.|+++|+||.+++.+++  .|+++-...+.
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~   71 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR   71 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence            455789999999999999999999999999999999873  67765444443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.76  E-value=0.0006  Score=56.84  Aligned_cols=123  Identities=14%  Similarity=0.074  Sum_probs=79.7

Q ss_pred             CCCeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          113 TEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       113 ~~~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      ..+...|+|. .+|+||.+++|.++|+++|+||..-..... +|...-.|.|...       +   .++..+.|.+ +..
T Consensus        22 ~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~-------~---~~~a~~~l~~-~~~   90 (167)
T 2re1_A           22 DKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG-------D---YKQTLEILSE-RQD   90 (167)
T ss_dssp             ECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG-------G---HHHHHHHHHH-SST
T ss_pred             cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech-------H---HHHHHHHHHH-HHH
Confidence            3466788888 499999999999999999999986554322 2333455666431       1   1333344444 222


Q ss_pred             CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCC---CcchHHH
Q 020194          191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD---RPKLLFD  267 (329)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~D---rpGLL~~  267 (329)
                      +..       .                                      ..|.+.   ...+.+.|.+.+   +||++++
T Consensus        91 ~l~-------~--------------------------------------~~i~~~---~~~a~vsvvG~~m~~~~Gv~a~  122 (167)
T 2re1_A           91 SIG-------A--------------------------------------ASIDGD---DTVCKVSAVGLGMRSHVGVAAK  122 (167)
T ss_dssp             TTT-------C--------------------------------------SEEEEE---SSEEEEEEECSSCTTCCCHHHH
T ss_pred             HcC-------C--------------------------------------ceEEec---CCEEEEEEECCCcCCCcCHHHH
Confidence            111       0                                      122332   367899999976   9999999


Q ss_pred             HHHHHhcCCeEEEEEEEEecCCeEEEEEEEE
Q 020194          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR  298 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~  298 (329)
                      +.++|++.||+|...  +|  ....-.|+|.
T Consensus       123 i~~aL~~~~InI~~i--st--se~~is~vv~  149 (167)
T 2re1_A          123 IFRTLAEEGINIQMI--ST--SEIKVSVLID  149 (167)
T ss_dssp             HHHHHHHTTCCCCEE--EE--CSSEEEEEEE
T ss_pred             HHHHHHHCCCcEEEE--Ec--ccCEEEEEEe
Confidence            999999999999994  45  2233445553

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.75  E-value=0.0014  Score=59.39  Aligned_cols=49  Identities=14%  Similarity=0.131  Sum_probs=40.8

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~   74 (329)
                      ...++++.|+||||+.+++++.|+++|+||.+.+.++  ..|+++-...+.
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   57 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR   57 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe
Confidence            3478999999999999999999999999999999986  456665444443

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.67  E-value=0.006  Score=61.02  Aligned_cols=203  Identities=15%  Similarity=0.118  Sum_probs=127.3

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (329)
Q Consensus        25 ~~~~~v~v~~~---Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~  101 (329)
                      .+...|++.+.   ++||..+++..+|++.|+||.-..  +. ... .+|.|...+.     .+..+.|.+.+.......
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~-Is~vI~~~d~-----~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVK-VSCVIDQRDA-----DRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSE-EEEEEEGGGH-----HHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCE-EEEEEcHHHH-----HHHHHHHHHhhcccCCCc
Confidence            46789999976   789999999999999999997554  32 222 2466644322     346667777765432100


Q ss_pred             CC-----cceeee-ecCCCCeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEeeC----C--eEEEEEEEEeCCCC
Q 020194          102 PS-----LRSSVG-VMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHN----D--RAAAVVHVTDHSTG  168 (329)
Q Consensus       102 ~~-----~~~~v~-~~~~~~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~----~--~~~d~f~V~~~~~g  168 (329)
                      ..     ....|. ...+.+...|+|. .+|+||+.++|.+.|+++|+||.--......    |  .....|.|..    
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence            00     011111 2334456677765 5899999999999999999999644333321    3  2234565543    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCC
Q 020194          169 YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIE  248 (329)
Q Consensus       169 ~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~  248 (329)
                            +..++..+.|.+ +..+.+                                             +.++.++   
T Consensus       500 ------~d~~~a~~~l~~-~~~~~~---------------------------------------------~~~v~~~---  524 (600)
T 3l76_A          500 ------GDSSQAEAILQP-LIKDWL---------------------------------------------DAAIVVN---  524 (600)
T ss_dssp             ------HHHHHHHHHHHH-HTTTST---------------------------------------------TCEEEEE---
T ss_pred             ------HHHHHHHHHHHH-HHHhcC---------------------------------------------CceEEEe---
Confidence                  234444444544 322211                                             1223343   


Q ss_pred             CCeEEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          249 KDYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       249 ~~~t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      ++...+.|.+   ..+||+.+++.++|++.||||....  |  ....=.+.|..
T Consensus       525 ~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--t--SEi~Is~vV~~  574 (600)
T 3l76_A          525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--T--SEIKISCVVPQ  574 (600)
T ss_dssp             CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--E--CSSEEEEEEEG
T ss_pred             CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--c--CCceEEEEEeH
Confidence            3678888886   5999999999999999999998766  3  23334455543

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.65  E-value=0.00074  Score=56.22  Aligned_cols=109  Identities=13%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             CCCeEEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC
Q 020194           24 CADATVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS   99 (329)
Q Consensus        24 ~~~~~~v~v~~-~Dr~GL~a~i~~~L~~~glnI~~A~i~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~   99 (329)
                      ..+...|++.+ +|+||.++++.++|++.|+||.--.....   .|..-.+|.|...+.     ++..+.|++ +..+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~-~~~~~~   86 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEP-VLAEIG   86 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHH-HHHHHC
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHH-HHHHhC
Confidence            34677888876 89999999999999999999985443322   345555688754322     223333333 222211


Q ss_pred             CCCCcceeeeecCCCCeEEEEEEeCC---CccHHHHHHHHHHhCCCcEEE
Q 020194          100 FAPSLRSSVGVMPTEEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVN  146 (329)
Q Consensus       100 ~~~~~~~~v~~~~~~~~~~i~v~~~D---r~Gll~~i~~~l~~~g~~I~~  146 (329)
                      .      .+.  ...+...+.|.|.+   +||+++++.++|++.|+||..
T Consensus        87 ~------~v~--~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~  128 (167)
T 2dt9_A           87 G------EAI--LRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEM  128 (167)
T ss_dssp             C------EEE--EECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred             C------cEE--EeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence            0      122  23467789999887   999999999999999999943

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.65  E-value=0.0022  Score=58.20  Aligned_cols=116  Identities=10%  Similarity=-0.017  Sum_probs=67.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCCC
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~~  103 (329)
                      ....+++.|+||||+.+++++.|+++|+||.+.+.++  ..|+++-...+.. ++...  .++.+.++.. ..+..    
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~~--~~L~~~f~~l-a~~~~----   77 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVAGV--NDFNSAFGKV-VEKYN----   77 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC-----CHHHHHHHHH-HGGGT----
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCCCH--HHHHHHHHHH-HHHcC----
Confidence            4578999999999999999999999999999999985  4566653333322 22111  2344444332 22211    


Q ss_pred             cceeeeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEe
Q 020194          104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (329)
Q Consensus       104 ~~~~v~~~~~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t  151 (329)
                      +...+..........|.+.+.  ---|..+......-.+++.=+-+.+
T Consensus        78 m~~~l~~~~~~~ri~vl~Sg~--g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           78 AEWWFRPRTDRKKVVIMVSKF--DHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             CEEEEEETTCCCEEEEEECSC--CHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             CeeEeeccCCCcEEEEEEeCC--CcCHHHHHHHHHCCCCCeEEEEEEe
Confidence            111222222223344444444  3467777777766656544344444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.59  E-value=0.00088  Score=56.43  Aligned_cols=138  Identities=17%  Similarity=0.280  Sum_probs=84.7

Q ss_pred             CCeEEEEE-EecCCccHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCC
Q 020194           25 ADATVIKV-DSVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (329)
Q Consensus        25 ~~~~~v~v-~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~  100 (329)
                      .+.+.|+| ..+|+||.++++...|+++|+||.--...+.   +|..-..|.+...+.     ++..+.|++ +..+.. 
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~-----~~a~~~l~~-~~~~~~-   85 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGN-   85 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH-----HHHHHHHHT-TTTTTT-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH-----HHHHHHHHH-HHHhcC-
Confidence            46778888 4699999999999999999999985544432   334433477643111     122222222 222211 


Q ss_pred             CCCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHH
Q 020194          101 APSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL  177 (329)
Q Consensus       101 ~~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~  177 (329)
                          ...+.  ...+...|.|.|.   +.||+++++..+|++.|+||..-  .+..  ....|.|..          +..
T Consensus        86 ----~~~v~--~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i--stSe--~~Is~vV~~----------~d~  145 (178)
T 2dtj_A           86 ----WTNVL--YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI--STSE--IRISVLIRE----------DDL  145 (178)
T ss_dssp             ----CSEEE--EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE--EEET--TEEEEEEEG----------GGH
T ss_pred             ----CCeEE--EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE--EcCC--CeEEEEEeH----------HHH
Confidence                01122  2346777888876   88999999999999999999873  3432  233455532          223


Q ss_pred             HHHHHHHHHHHc
Q 020194          178 STIKELLFNVLR  189 (329)
Q Consensus       178 ~~l~~~L~~~L~  189 (329)
                      ++..+.|.+.+.
T Consensus       146 ~~Av~~Lh~~F~  157 (178)
T 2dtj_A          146 DAAARALHEQFQ  157 (178)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            444455666664

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.59  E-value=0.0025  Score=58.00  Aligned_cols=48  Identities=10%  Similarity=0.122  Sum_probs=40.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V   73 (329)
                      ...++++.|+||||+.+++++.|+++|+||.+.+.++  ..|+++-...+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   58 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF   58 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence            3578999999999999999999999999999999996  45666533333

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.58  E-value=0.0026  Score=53.47  Aligned_cols=122  Identities=14%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CCCeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEee---CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          113 TEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       113 ~~~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~---~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ..+.+.|+|. .+|+||.+++|.+.|+++|+||......+.   ++.....|.+..          +..++..+.|.+ +
T Consensus        12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~   80 (178)
T 2dtj_A           12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-L   80 (178)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-T
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-H
Confidence            3456777774 689999999999999999999886555443   223333466543          122333333332 2


Q ss_pred             cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchH
Q 020194          189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLL  265 (329)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL  265 (329)
                      ..+..                                             ...+.+.   .+...+.|.+.   ++||++
T Consensus        81 ~~~~~---------------------------------------------~~~v~~~---~~~a~VsvVG~gm~~~~Gv~  112 (178)
T 2dtj_A           81 QVQGN---------------------------------------------WTNVLYD---DQVGKVSLVGAGMKSHPGVT  112 (178)
T ss_dssp             TTTTT---------------------------------------------CSEEEEE---SCEEEEEEEEECCTTCHHHH
T ss_pred             HHhcC---------------------------------------------CCeEEEe---CCeEEEEEEcCCcccCccHH
Confidence            11111                                             0123333   36788888886   999999


Q ss_pred             HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEE
Q 020194          266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI  297 (329)
Q Consensus       266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v  297 (329)
                      +++.++|++.||||...  +|-.  ..-.|.|
T Consensus       113 arif~aLa~~~InI~~i--stSe--~~Is~vV  140 (178)
T 2dtj_A          113 AEFMEALRDVNVNIELI--STSE--IRISVLI  140 (178)
T ss_dssp             HHHHHHHHHTTCCCCEE--EEET--TEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEE--EcCC--CeEEEEE
Confidence            99999999999999984  3332  3345666

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.43  E-value=0.00065  Score=62.10  Aligned_cols=66  Identities=14%  Similarity=0.148  Sum_probs=48.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..++++|.|+||||+.+.|+++|+++|+||.++..++.  .+.+.-...+..+  +...    ..+.|++.|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPF----DLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSS----CHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCC----CHHHHHHHHHH
Confidence            46789999999999999999999999999999999975  4665444444321  1111    24667777654

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.34  E-value=0.06  Score=53.75  Aligned_cols=202  Identities=14%  Similarity=0.135  Sum_probs=118.1

Q ss_pred             EEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC-C-C
Q 020194           28 TVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-P-S  103 (329)
Q Consensus        28 ~~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~-~-~  103 (329)
                      +.|++. .++.+|..+++...|+.+|++|.--.... .+|..-..|.|...+-     ++..+.+++ +..+.... + .
T Consensus       271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~~~  344 (600)
T 3l76_A          271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPEAD  344 (600)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTTCS
T ss_pred             EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhcccccc
Confidence            334443 47899999999999999999995332222 4566666787644221     122222232 22221000 0 0


Q ss_pred             cceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHH
Q 020194          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI  180 (329)
Q Consensus       104 ~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l  180 (329)
                      ....+  ....+...|.|.|.   .+||+.+++..+|++.|+||....  +.  .....|.|..          +..++.
T Consensus       345 ~~~~v--~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~----------~d~~~A  408 (600)
T 3l76_A          345 QEAEI--IVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQ----------RDADRA  408 (600)
T ss_dssp             SSSEE--EEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEG----------GGHHHH
T ss_pred             Cccee--EecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcH----------HHHHHH
Confidence            01112  22346788999876   689999999999999999997554  32  3344565653          123444


Q ss_pred             HHHHHHHHcCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEE-eC
Q 020194          181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMR-SK  259 (329)
Q Consensus       181 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~-a~  259 (329)
                      .+.|.+.+.....    + ..         .+.       ..-+           ...-+-|..+.   +.+.|.|. -+
T Consensus       409 v~aLh~~f~~~~t----~-~~---------~~~-------~~~~-----------~~~v~Gia~~~---~~a~i~i~~~~  453 (600)
T 3l76_A          409 IAALSNAFGVTLS----P-PK---------NQT-------DTSH-----------LPAVRGVALDQ---DQAQIAIRHVP  453 (600)
T ss_dssp             HHHHHHHTTCCBC----C-CC---------CCC-------C--------------CCSCCEEEEEC---SEEEEEEEEEE
T ss_pred             HHHHHHhhcccCC----C-cc---------ccc-------cccc-----------cCceEEEEeeC---CEEEEEEecCC
Confidence            5566766643211    0 00         000       0000           00113455543   56667665 48


Q ss_pred             CCcchHHHHHHHHhcCCeEEEEEEEEe
Q 020194          260 DRPKLLFDIVCTLTDMQYVVFHGMVNT  286 (329)
Q Consensus       260 DrpGLL~~I~~~l~~~~i~I~~a~I~T  286 (329)
                      |+||+.++|-..|++.||+|....-+.
T Consensus       454 ~~~g~~~~if~~La~~~I~vDmI~q~~  480 (600)
T 3l76_A          454 DRPGMAAQLFTALAEANISVDMIIQSQ  480 (600)
T ss_dssp             SSTTHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             CCccHHHHHHHHHHHcCCcEEEEEecc
Confidence            999999999999999999997665543

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.33  E-value=0.00076  Score=61.30  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=48.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..++++|.|+||||+.+.|+++|+++|+||.+++.++.  .+.+.-...+.-+  +...    ..+.|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~~~~----~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA--AKVI----PLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES--SCCC----CHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC--CCCC----CHHHHHHHHHH
Confidence            45789999999999999999999999999999999853  4565544444432  1111    24677777765

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.32  E-value=0.00075  Score=61.27  Aligned_cols=71  Identities=11%  Similarity=0.042  Sum_probs=51.1

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD  192 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (329)
                      ..++++|.|+||||+.+.|+++|+++|+||.+++.++.  .+.+.-...+..+  + ..    ..+.|++.|.. +.++.
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~-~~----~~~~L~~~f~~-la~~l   78 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP--D-DF----DEAGFRAGLAE-RSEAF   78 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--S-SC----CHHHHHHHHHH-HHGGG
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC--C-CC----CHHHHHHHHHH-HHHHc
Confidence            45789999999999999999999999999999999863  4555443333321  1 11    24778888765 44433


Q ss_pred             C
Q 020194          193 D  193 (329)
Q Consensus       193 ~  193 (329)
                      +
T Consensus        79 ~   79 (286)
T 3n0v_A           79 G   79 (286)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.27  E-value=0.00075  Score=61.31  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=47.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      ...++++|.|+||||+.+.|+++|+++|+||.++..++.  .+.+.-...+..+  +      ...+.|++.|.. +.+
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~------~~~~~L~~~f~~-la~   74 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP--V------AGVNDFNSAFGK-VVE   74 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--C---------CHHHHHHHH-HHG
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC--C------CCHHHHHHHHHH-HHH
Confidence            346799999999999999999999999999999999853  4554433333221  1      123467777765 444

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.24  E-value=0.00093  Score=60.82  Aligned_cols=68  Identities=12%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..+++++.|+||||+.+.|+++|+++|+||.+++.++.  .|.+.-...+..+..+...    ..+.|++.|..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~   78 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEP   78 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHH
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHH
Confidence            46789999999999999999999999999999999963  4555433333321001011    24667777764

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.17  E-value=0.0016  Score=54.06  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ...|.|.+.|+||+|++|+++|+++|+||.+..+.+..  +....+|.+..        +...+++|.+.|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcC
Confidence            35789999999999999999999999999999998654  34445555542        14677888888887

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.17  E-value=0.0018  Score=53.92  Aligned_cols=123  Identities=15%  Similarity=0.101  Sum_probs=78.0

Q ss_pred             CCCeEEEEEEe-CCCccHHHHHHHHHHhCCCcEEEEEEEee---CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          113 TEEHTSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       113 ~~~~~~i~v~~-~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~---~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      ..+...|+|.+ +|+||.++++.++|+++|+||..-.....   .|...-.|.|...       +.   ++..+.|.+ +
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-------d~---~~a~~~L~~-~   81 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-------FA---QEALEALEP-V   81 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-------GH---HHHHHHHHH-H
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-------HH---HHHHHHHHH-H
Confidence            44677777776 89999999999999999999975443321   1244456777541       11   222233332 1


Q ss_pred             cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeCC---CcchH
Q 020194          189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKD---RPKLL  265 (329)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~D---rpGLL  265 (329)
                      ..+..                                            .  .+.++   .....+.|.+.+   +||++
T Consensus        82 ~~~~~--------------------------------------------~--~v~~~---~~~a~vsvVG~gm~~~~Gv~  112 (167)
T 2dt9_A           82 LAEIG--------------------------------------------G--EAILR---PDIAKVSIVGVGLASTPEVP  112 (167)
T ss_dssp             HHHHC--------------------------------------------C--EEEEE---CSEEEEEEEESSGGGSTHHH
T ss_pred             HHHhC--------------------------------------------C--cEEEe---CCEEEEEEECCCcccCcCHH
Confidence            11000                                            0  12222   367888999876   99999


Q ss_pred             HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      +++.++|++.||||....  |- + ..=.|.|..
T Consensus       113 a~~f~aL~~~~InI~~is--~S-e-~~is~vv~~  142 (167)
T 2dt9_A          113 AKMFQAVASTGANIEMIA--TS-E-VRISVIIPA  142 (167)
T ss_dssp             HHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEEG
T ss_pred             HHHHHHHHHCCCCEEEEE--cc-C-CEEEEEEeH
Confidence            999999999999996553  33 2 244565643

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=97.15  E-value=0.0037  Score=52.76  Aligned_cols=137  Identities=16%  Similarity=0.223  Sum_probs=84.3

Q ss_pred             CeEEEEE-EecCCccHHHHHHHHHHhCCceEEEEEEE-ec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194           26 DATVIKV-DSVNKHGILLQVIQVLNDVNLVIKKAYIS-SD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (329)
Q Consensus        26 ~~~~v~v-~~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t~--~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~  101 (329)
                      +.+.|+| ..+|+||.++++..+|+++|+||.--... +.  .|..-..|.|...+.     +...+.|++ +..+..  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~-----~~a~~~L~~-~~~el~--   86 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEIG--   86 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH-----HHHHHHHHH-THHHHC--
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH-----HHHHHHHHH-HHHhcC--
Confidence            4555655 37899999999999999999999744332 22  566666788754332     122222332 111111  


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHH
Q 020194          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS  178 (329)
Q Consensus       102 ~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~  178 (329)
                         ...+.  -..+...|.|.|.   +.||+.+++..+|++.|+||....  |.  ...-.|.|..          +..+
T Consensus        87 ---~~~v~--~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tS--ei~Is~vV~~----------~d~~  147 (181)
T 3s1t_A           87 ---FSQLL--YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRD----------TELD  147 (181)
T ss_dssp             ---CSEEE--EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EE--TTEEEEEEEG----------GGHH
T ss_pred             ---cceEE--EeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEeH----------HHHH
Confidence               00111  2235777888766   899999999999999999998655  32  2234455543          1234


Q ss_pred             HHHHHHHHHHc
Q 020194          179 TIKELLFNVLR  189 (329)
Q Consensus       179 ~l~~~L~~~L~  189 (329)
                      +.-+.|.+.|.
T Consensus       148 ~Av~aLH~~f~  158 (181)
T 3s1t_A          148 KAVVALHEAFG  158 (181)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            44456666663

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.14  E-value=0.0018  Score=53.88  Aligned_cols=64  Identities=11%  Similarity=0.030  Sum_probs=49.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      ...|+|.+.||||+|++|+.+|++.|+||.+..+.+..  +...=+|-+. .  .    .+..+.|...|...
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~--d----~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G--D----EKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S--C----HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c--c----HHHHHHHHHHHcCC
Confidence            36789999999999999999999999999999987443  4466666665 2  1    45678888887643

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.01  E-value=0.003  Score=52.46  Aligned_cols=63  Identities=11%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~--~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ...|.|...|+||+|++|+++|+++|+||.+..+.+..  +....+|.|..        ++..+++|.+.|.+
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~K   68 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcC
Confidence            35789999999999999999999999999999997654  44445566653        13677888888877

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.92  E-value=0.0025  Score=52.97  Aligned_cols=64  Identities=11%  Similarity=0.072  Sum_probs=49.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC--CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g--~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      ...|+|.+.|+||+|.+|+.+|++.|+||.+..+.+..  +...=+|-+...       .+..+.|...|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d-------~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-------DEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-------HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc-------HHHHHHHHHHhcCC
Confidence            36789999999999999999999999999999986433  456666666532       45677888887643

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.74  E-value=0.0047  Score=51.20  Aligned_cols=58  Identities=9%  Similarity=-0.012  Sum_probs=43.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      -|+|.|.||+|||++|+++|++.+++|..+.+.+.|.     +|+.-+    ..+.+....|...+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~----~~~~~~~~~L~~~l~   59 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA----ELEFESFSSLMAEIR   59 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC----CCCHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE----eCCHHHHHHHHHHHH
Confidence            3789999999999999999999999999999977643     455433    122345566665544

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.54  E-value=0.061  Score=51.29  Aligned_cols=107  Identities=19%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCC
Q 020194           26 DATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (329)
Q Consensus        26 ~~~~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~  101 (329)
                      +.+.|+|. .+|+||.++++...|+++|+||.--...+.   .|.....|.|...+.     ++..+.|++ +..+... 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTC-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCC-
Confidence            45567777 689999999999999999999986544332   455555787754221     233333443 3222210 


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEE
Q 020194          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVV  145 (329)
Q Consensus       102 ~~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~  145 (329)
                          ..+..  ..+...|.|.|.   +.||.++++..+|++.|+||.
T Consensus       336 ----~~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~  376 (421)
T 3ab4_A          336 ----TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE  376 (421)
T ss_dssp             ----SEEEE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC
T ss_pred             ----ceEEE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEE
Confidence                01222  245677888875   789999999999999999998

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.32  E-value=0.0082  Score=51.46  Aligned_cols=112  Identities=13%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             CCCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccC
Q 020194           24 CADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS---DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS   99 (329)
Q Consensus        24 ~~~~~~v~v~-~~Dr~GL~a~i~~~L~~~glnI~~A~i~t---~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~   99 (329)
                      ..+...|++. .+|+||..+++.++|++.|+||---....   .++.....|.+...+..     ...+.+++ +..+..
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~-----~~~~~l~~-~~~~~~  105 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGP-----AAVEKLDS-LRNEIG  105 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHH-----HHHHHHHT-THHHHC
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHH-----HHHHHHHH-HHhhhc
Confidence            3456777776 69999999999999999999997443221   34566667876542221     12222221 211111


Q ss_pred             CCCCcceeeeecCCCCeEEEEEE---eCCCccHHHHHHHHHHhCCCcEEEEE
Q 020194          100 FAPSLRSSVGVMPTEEHTSIEFT---GTDRPGLFSEVCAVLADLHCNVVNAE  148 (329)
Q Consensus       100 ~~~~~~~~v~~~~~~~~~~i~v~---~~Dr~Gll~~i~~~l~~~g~~I~~A~  148 (329)
                           ...+.  .+.+...|.|.   .+..||+.+++..+|++.|+||.--.
T Consensus       106 -----~~~v~--~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          106 -----FSQLL--YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             -----CSEEE--EECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -----eeeEE--EecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence                 00111  12345556665   46799999999999999999998553

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.31  E-value=0.015  Score=49.39  Aligned_cols=63  Identities=14%  Similarity=0.282  Sum_probs=47.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee-C-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~-~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ...|+|...|+||.|++|+++|++.|+||.+..+... + +....++.|..+        +..+++|.+.|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcC
Confidence            5689999999999999999999999999999888743 3 334455666541        1356777777665

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.23  E-value=0.015  Score=49.37  Aligned_cols=63  Identities=6%  Similarity=0.079  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA  320 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~  320 (329)
                      ...|+|...|+||.|++|+.+|+..|+||.+..+. |.. +...=++-|...       ....++|...|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcC
Confidence            47899999999999999999999999999998886 444 344445555433       1346777777654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.19  E-value=0.094  Score=44.00  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=76.4

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEee---CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          115 EHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       115 ~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~---~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      +.+.|+|. .+|+||.+++|...|+++|+||..-.....   .|.....|.|...       +.   ++..+.|.+ +..
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-------~~---~~a~~~L~~-~~~   83 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VG---PAAVEKLDS-LRN   83 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-------TH---HHHHHHHHH-THH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-------HH---HHHHHHHHH-HHH
Confidence            45555553 679999999999999999999974433222   2344556777541       11   222233332 111


Q ss_pred             CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHH
Q 020194          191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFD  267 (329)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~  267 (329)
                      +..                                             ..+|.++   .....+.|.+.   ++||++++
T Consensus        84 el~---------------------------------------------~~~v~~~---~~va~VsvVG~gm~~~~Gvaa~  115 (181)
T 3s1t_A           84 EIG---------------------------------------------FSQLLYD---DHIGKVSLIGAGMRSHPGVTAT  115 (181)
T ss_dssp             HHC---------------------------------------------CSEEEEE---SCEEEEEEEEECCTTCHHHHHH
T ss_pred             hcC---------------------------------------------cceEEEe---CCEEEEEEEecccccCchHHHH
Confidence            000                                             0123333   25677888765   89999999


Q ss_pred             HHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       268 I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      +.++|++.||+|....  |-  ...=.|.|...
T Consensus       116 ~f~aLa~~~InI~~Is--tS--ei~Is~vV~~~  144 (181)
T 3s1t_A          116 FCEALAAVGVNIELIS--TS--EIRISVLCRDT  144 (181)
T ss_dssp             HHHHHHHTTCCCCEEE--EE--TTEEEEEEEGG
T ss_pred             HHHHHHHCCCcEEEEE--cC--CCEEEEEEeHH
Confidence            9999999999998877  32  33334656443

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.17  E-value=0.011  Score=51.01  Aligned_cols=48  Identities=10%  Similarity=0.067  Sum_probs=35.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-----CeEEEEEEEE
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-----TEAYQEFYIR  298 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-----~~~~D~F~v~  298 (329)
                      ...|.|.+.||||+|++|+++|+++++||......+..     ..+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            46789999999999999999999999999999998854     2444445554

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.10  E-value=0.012  Score=50.70  Aligned_cols=47  Identities=17%  Similarity=0.137  Sum_probs=36.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEE
Q 020194           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNV   73 (329)
Q Consensus        27 ~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~-----~g~~~d~F~V   73 (329)
                      ...+.|.+.||||+|++++.+|++++.||...+..+.     +|.+.-.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV   55 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   55 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEE
Confidence            4678999999999999999999999999999999873     5666655544

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.95  E-value=0.034  Score=45.87  Aligned_cols=59  Identities=19%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      .|.|.|.||+|++++|+.+|+.+++||..+.+.+. |.    +++.-+  .   .+.+....|...+.+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~--~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA--E---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC--C---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE--e---CCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999765 32    455542  1   124566777776665

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.84  E-value=0.13  Score=48.90  Aligned_cols=109  Identities=15%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEee---CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          115 EHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       115 ~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~---~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||..-...+.   .+.....|.|...       +.   ++..+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~---~~a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DG---RRAMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------TH---HHHHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hH---HHHHHHHHH-HHH
Confidence            44566776 589999999999999999999986554343   2334456666531       12   222333433 222


Q ss_pred             CCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHH
Q 020194          191 YDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFD  267 (329)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~  267 (329)
                      +..       .                                      ..+.++   .+...+.|.+.   ++||++++
T Consensus       332 ~~~-------~--------------------------------------~~v~~~---~~~a~vsvVG~gm~~~~Gv~a~  363 (421)
T 3ab4_A          332 QGN-------W--------------------------------------TNVLYD---DQVGKVSLVGAGMKSHPGVTAE  363 (421)
T ss_dssp             TTT-------C--------------------------------------SEEEEE---CCEEEEEEECGGGTSCTTHHHH
T ss_pred             HcC-------C--------------------------------------ceEEEe---CCeEEEEEEccCcccCccHHHH
Confidence            111       0                                      123332   36788888885   89999999


Q ss_pred             HHHHHhcCCeEEEEE
Q 020194          268 IVCTLTDMQYVVFHG  282 (329)
Q Consensus       268 I~~~l~~~~i~I~~a  282 (329)
                      +.++|++.||||...
T Consensus       364 ~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          364 FMEALRDVNVNIELI  378 (421)
T ss_dssp             HHHHHHHTTCCCCEE
T ss_pred             HHHHHHHCCCCEEEE
Confidence            999999999999954

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.41  E-value=0.12  Score=44.05  Aligned_cols=124  Identities=15%  Similarity=0.096  Sum_probs=74.9

Q ss_pred             CCCeEEEEEE-eCCCccHHHHHHHHHHhCCCcEEEEEEEee--CC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Q 020194          113 TEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWTH--ND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (329)
Q Consensus       113 ~~~~~~i~v~-~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (329)
                      +.+...|+|. .+|+||+.++|.+.|++.|+||.---....  .+ .....|.+...          ..++..+.|.+ +
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~----------d~~~~~~~l~~-~  100 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD----------VGPAAVEKLDS-L  100 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG----------GHHHHHHHHHT-T
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh----------hHHHHHHHHHH-H
Confidence            4456677776 589999999999999999999875432221  22 33345666531          11222222221 1


Q ss_pred             cCCCCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEe---CCCcchH
Q 020194          189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRS---KDRPKLL  265 (329)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a---~DrpGLL  265 (329)
                      ..+..                                             ..++.+++   +...+.|.+   ..+||+.
T Consensus       101 ~~~~~---------------------------------------------~~~v~~~~---~iakVSvVG~GM~~~~GVa  132 (200)
T 4go7_X          101 RNEIG---------------------------------------------FSQLLYDD---HIGKVSLIGAGMRSHPGVT  132 (200)
T ss_dssp             HHHHC---------------------------------------------CSEEEEEC---CEEEEEEEEESCTTCHHHH
T ss_pred             Hhhhc---------------------------------------------eeeEEEec---CeeeeeeeccccccCCCcH
Confidence            00000                                             01233332   455666665   6899999


Q ss_pred             HHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          266 FDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       266 ~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      +++.++|++.||||....  |  ....=.|.|..
T Consensus       133 ak~F~aLa~~~INI~mIs--t--SEi~IS~vV~~  162 (200)
T 4go7_X          133 ATFCEALAAVGVNIELIS--T--SEIRISVLCRD  162 (200)
T ss_dssp             HHHHHHHHHTTCCCCEEE--E--CSSEEEEEEEG
T ss_pred             HHHHHHHHHCCCCEEEEE--c--cCCEEEEEEeH
Confidence            999999999999999875  3  23334455643

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=93.00  E-value=0.71  Score=44.25  Aligned_cols=121  Identities=16%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +.+.|+|.+   ++.+|..+++..+|+.+|++|.-..  +...  -.+|.|...+-.. ...++.+.++..+...     
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~--~is~~V~~~d~~~-~~~~~~~el~~~~~~~-----  366 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVD--SVSLVIEDCKLDG-KCDKIIEEIKKQCNPD-----  366 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETT--EEEEEEEHHHHTT-THHHHHHHHHHHSCCS-----
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCC--EEEEEEecchHHH-HHHHHHHHHHHhcCCC-----
Confidence            345567765   6899999999999999999997432  2111  2246664432110 0112333333322110     


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                          .+.  -..+...|.|+|.   ..||+.+++..+|++.|+||....-.|.  ...-.|.|..
T Consensus       367 ----~v~--v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtS--ei~Is~vV~~  423 (446)
T 3tvi_A          367 ----SIE--IHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSS--EINVIVGVET  423 (446)
T ss_dssp             ----EEE--EEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSC--TTEEEEEEEG
T ss_pred             ----cEE--EeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCC--CceEEEEEcH
Confidence                111  1235678888876   5899999999999999999875433232  2334455543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.48  E-value=0.56  Score=44.35  Aligned_cols=50  Identities=12%  Similarity=0.106  Sum_probs=43.2

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRH  299 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~  299 (329)
                      +...|-+.-.|+||.+..|+.+|.++||||......+.|+.+.-++-+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            34556688899999999999999999999999999998888877776643

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.20  E-value=0.68  Score=43.79  Aligned_cols=48  Identities=13%  Similarity=0.222  Sum_probs=42.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V   73 (329)
                      +...+.+.-+|+||.+++++.+|.++|+||...+..+.++.++-++.+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            456788999999999999999999999999999999988888755554

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=90.70  E-value=1.6  Score=39.95  Aligned_cols=52  Identities=12%  Similarity=0.151  Sum_probs=38.5

Q ss_pred             EEEEEEeC--CCcchHHHHHHHHhcCCeEEEEEEEEecCC-eEEEEEEEEeCCCCC
Q 020194          252 TVITMRSK--DRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLP  304 (329)
Q Consensus       252 t~l~v~a~--DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~-~~~D~F~v~~~~g~~  304 (329)
                      +.+-+...  |+||-||++-..|+.+|||+.+..-.-.+. .-+=.||| |.+|+.
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~  261 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAP  261 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCT
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCc
Confidence            33334443  799999999999999999999887664444 45567776 666765

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.68  E-value=0.61  Score=41.90  Aligned_cols=54  Identities=17%  Similarity=0.077  Sum_probs=42.4

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP  304 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~  304 (329)
                      ..|.|-+..+|+||-||++...|+.+|||+.+..-.-.+ ..-+=.||| |.+|+.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCC
Confidence            356666777899999999999999999999988866444 446778888 555765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=90.39  E-value=0.57  Score=44.47  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=44.6

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEE
Q 020194           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMD   69 (329)
Q Consensus        12 ~~~~~V~v~~~~~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d   69 (329)
                      +|.|.|...  ...+...|.+.-+|.||.+.+|..+|+++|+||..-...|.+++++-
T Consensus       330 Vn~p~~~~~--~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~  385 (416)
T 3k5p_A          330 VNFPQVQLP--PRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYL  385 (416)
T ss_dssp             SSSCCCCCC--CCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEE
T ss_pred             eeCCCcCCC--CCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEE
Confidence            444555442  22357899999999999999999999999999998777788877753

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.27  E-value=0.91  Score=44.44  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=41.0

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEE
Q 020194          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHV  162 (329)
Q Consensus       113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V  162 (329)
                      ......+.+.-+|+||.+..++..|.++|+||.+.++...  ++.+.-++.+
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v  502 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL  502 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence            3456788899999999999999999999999999999875  3445555544

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=89.74  E-value=3.6  Score=39.99  Aligned_cols=138  Identities=14%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCC-cHHHHHHHHHHhccccCCC
Q 020194           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIR-DKEVIDYIQQRLETDASFA  101 (329)
Q Consensus        26 ~~~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~-~~~~~~~ie~~L~~~~~~~  101 (329)
                      +.+.|+|.+   .+++|..+++..+|+++|+||.--. .+...   .+|.|...+..... ..+..+.+...|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            455667774   6789999999999999999998552 22222   23665332211100 1223333333333211   


Q ss_pred             CCcceeeeecCCCCeEEEEEEeC--CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHH
Q 020194          102 PSLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLST  179 (329)
Q Consensus       102 ~~~~~~v~~~~~~~~~~i~v~~~--Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~  179 (329)
                           .+..  ..+...|.|+|.  ..||+.+++..+|++.|+||....--+  ...--.|.|..          +..++
T Consensus       413 -----~v~~--~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGs--Sei~Is~vV~~----------~d~~~  473 (510)
T 2cdq_A          413 -----VVNL--LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA--SKVNISFIVNE----------AEAEG  473 (510)
T ss_dssp             -----EEEE--EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT--TCSEEEEEEEH----------HHHHH
T ss_pred             -----eEEE--eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecC--CcceEEEEEeH----------HHHHH
Confidence                 1111  235667888887  778999999999999999987432211  23344566653          33455


Q ss_pred             HHHHHHHHHc
Q 020194          180 IKELLFNVLR  189 (329)
Q Consensus       180 l~~~L~~~L~  189 (329)
                      .-+.|++.+-
T Consensus       474 Av~aLH~~f~  483 (510)
T 2cdq_A          474 CVQALHKSFF  483 (510)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5556666664

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=89.64  E-value=1.3  Score=42.31  Aligned_cols=122  Identities=9%  Similarity=0.075  Sum_probs=74.7

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCC
Q 020194          115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (329)
Q Consensus       115 ~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (329)
                      +.+.|.|.+   .+.||++++|..+|+++|++|...  .+ + .....|.|...   . +.  ....++.+.|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~-~~~is~~V~~~---d-~~--~~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-G-VDSVSLVIEDC---K-LD--GKCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-E-TTEEEEEEEHH---H-HT--TTHHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-C-CCEEEEEEecc---h-HH--HHHHHHHHHHHHhcC--
Confidence            355677775   589999999999999999998743  22 1 22345666541   0 00  012223333332111  


Q ss_pred             CCcccccccCCCCCCccccccccccccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEeC---CCcchHHHH
Q 020194          192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSK---DRPKLLFDI  268 (329)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~~~~~~~~~v~i~~~~~~~t~l~v~a~---DrpGLL~~I  268 (329)
                                                                     ...|.+++   +...+.|.+.   .+||+.+++
T Consensus       365 -----------------------------------------------~~~v~v~~---~vA~VSvVG~gM~~~~Gvaari  394 (446)
T 3tvi_A          365 -----------------------------------------------PDSIEIHP---NMALVATVGTGMAKTKGIANKI  394 (446)
T ss_dssp             -----------------------------------------------CSEEEEEE---EEEEEEEECGGGSSCTTHHHHH
T ss_pred             -----------------------------------------------CCcEEEeC---CeEEEEEECCCccCChhHHHHH
Confidence                                                           01233332   5678888875   699999999


Q ss_pred             HHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       269 ~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      .++|++.||+|....-.|  ....=.|.|...
T Consensus       395 f~aLa~~~InI~mIsqgt--Sei~Is~vV~~~  424 (446)
T 3tvi_A          395 FTALSKENVNIRMIDQGS--SEINVIVGVETV  424 (446)
T ss_dssp             HHHHHHTTCCEEEEEECS--CTTEEEEEEEGG
T ss_pred             HHHHHHCCCCEEEEEecC--CCceEEEEEcHH
Confidence            999999999998764222  233344656443

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=89.46  E-value=0.77  Score=41.83  Aligned_cols=55  Identities=18%  Similarity=0.136  Sum_probs=42.0

Q ss_pred             CCeEEEEEEeC-CCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCC
Q 020194          249 KDYTVITMRSK-DRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLP  304 (329)
Q Consensus       249 ~~~t~l~v~a~-DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~  304 (329)
                      ...|.|-+..+ |+||-||++...|+.+|||+.+..-.-.+ ..-+=.||| |.+|+.
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~  255 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSI-DADGHA  255 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEE-EEESCT
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEE-EEeCCC
Confidence            35677777775 99999999999999999999887765333 334567888 455765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.03  E-value=3.1  Score=39.35  Aligned_cols=49  Identities=18%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEE
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V  162 (329)
                      .+...|.+.-+|.||.+.+|+.+|+++|+||..-...|.++.+..+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            3578999999999999999999999999999998888877765444444

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=88.91  E-value=0.79  Score=43.89  Aligned_cols=51  Identities=24%  Similarity=0.265  Sum_probs=36.4

Q ss_pred             CeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEec--CCeEEEEEEEEeC
Q 020194          250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHV  300 (329)
Q Consensus       250 ~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~--g~~~~D~F~v~~~  300 (329)
                      ..+-+.+...|+||.|.+|+.+|.++||+|.+..=.-.  ++.......+|+.
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~  410 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV  410 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence            56778888999999999999999999999988653211  1112455557765

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=88.65  E-value=2.3  Score=41.53  Aligned_cols=62  Identities=16%  Similarity=0.214  Sum_probs=46.8

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      .+..+.+.-+|+||...+++..|.++|+||...++..  .+|.++-.+.+.+   . + +++..+.|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~---~-~-~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ---D-V-PDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS---C-C-CHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC---C-C-CHHHHHHHhc
Confidence            4677888999999999999999999999999999985  5666764454422   1 1 2456666654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=88.61  E-value=4.1  Score=37.30  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=38.1

Q ss_pred             EEEEEEeC--CCccHHHHHHHHHHhCCCcEEEEEEEeeCCe-EEEEEEEEeCCCCC
Q 020194          117 TSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGY  169 (329)
Q Consensus       117 ~~i~v~~~--Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~-~~d~f~V~~~~~g~  169 (329)
                      +.+.+..+  |+||-|+++.+.|+.+|+|...-......++ +.-.|||.-  +|.
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~  260 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAA  260 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSC
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCC
Confidence            44444444  7999999999999999999887777766554 456788765  354

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=88.36  E-value=1.3  Score=39.69  Aligned_cols=64  Identities=19%  Similarity=0.138  Sum_probs=47.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      .|.|.+..+|+||-|+++.+.|+.+|+|+..-......+ .+.-.|||.-  +|.. .+    +.++++|.+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~~-~d----~~v~~aL~~  264 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGHR-ED----QNVHNALEN  264 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESCT-TS----HHHHHHHHH
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecCC-Cc----HHHHHHHHH
Confidence            466777778999999999999999999988777776554 4677888875  3543 33    445555554

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=88.02  E-value=1.1  Score=39.79  Aligned_cols=49  Identities=14%  Similarity=0.192  Sum_probs=38.8

Q ss_pred             CeEEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEE
Q 020194          250 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIR  298 (329)
Q Consensus       250 ~~t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~  298 (329)
                      ..|.|-+..   +|+||-||++...|+.+|||+.+..-.-.+ ..-+=.|||.
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD  237 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQ  237 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEE
Confidence            455666666   899999999999999999999988765444 4466788884

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=87.72  E-value=0.89  Score=36.82  Aligned_cols=113  Identities=15%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhccccCCCC
Q 020194           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (329)
Q Consensus        26 ~~~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~~~~~~~  102 (329)
                      +...|++.+   ++.||..+++..+|+++|+||.--.  +...  -.+|.|.+.+    ...++.+    .|...     
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~----~~~~il~----~l~~~-----   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK----NLPDIVR----ALSDI-----   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT----THHHHHH----HHTTT-----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH----HHHHHHH----HHhcc-----
Confidence            567788874   5788999999999999999996332  2221  2347664322    0112222    22211     


Q ss_pred             CcceeeeecCCCCeEEEEEEeC---CCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       103 ~~~~~v~~~~~~~~~~i~v~~~---Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                         ..+..  ..+...|.|.|.   +.||+.+++..+|+  |+||....-.+  ....-.|.|..
T Consensus        80 ---~~v~~--~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~--Se~~is~vv~~  135 (157)
T 3mah_A           80 ---GDVTV--DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGG--SNYNVSVLVKA  135 (157)
T ss_dssp             ---EEEEE--EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECS--SSSCEEEEEEG
T ss_pred             ---CeEEE--eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCC--CCCEEEEEEcH
Confidence               11111  235677888875   68999999999999  89987543222  22334555553

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=86.22  E-value=3.4  Score=36.69  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=40.0

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEe
Q 020194          115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD  164 (329)
Q Consensus       115 ~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~  164 (329)
                      ..|.|.+..   +|+||-|+++.+.|+.+|+|+..-......+ .+.-.|||.-
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            456666666   8999999999999999999988777776554 4567888875

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=85.28  E-value=2.2  Score=38.87  Aligned_cols=50  Identities=16%  Similarity=0.212  Sum_probs=39.5

Q ss_pred             CeEEEEEEeC-CCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEe
Q 020194          115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD  164 (329)
Q Consensus       115 ~~~~i~v~~~-Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~  164 (329)
                      ..|.|.+..+ |+||-|+++.+.|+.+|+|+..-......+ .+.-.|||.-
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  251 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA  251 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence            4577777775 999999999999999999988777666543 3456788865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-05
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	1e-04

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           I   G D+ G+ + V   +A+L  N+ +      ++    +  V+
Sbjct: 5   ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.86
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.7
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.65
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.61
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.25
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.12
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.93
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.91
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.77
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.76
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.7
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.61
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.52
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.37
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.33
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.32
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.29
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.26
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.08
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.02
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.96
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.8
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.56
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.43
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.19
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.96
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	88.82
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	88.7
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	88.0
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.5
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	85.93
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	85.14
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	80.97

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.86  E-value=1.3e-08  Score=74.28  Aligned_cols=71  Identities=24%  Similarity=0.462  Sum_probs=60.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Q 020194          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD  193 (329)
Q Consensus       114 ~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (329)
                      .++++|++.|+||||++++++++|+++|+||.+++..+.++.+...+.|.-+        +..+++|++.|.+ |.++.+
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~-l~~~l~   73 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL-LGQQHD   73 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH-HHHHHT
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH-HHHHhC
Confidence            3678999999999999999999999999999999999999999888888752        3457888888876 554443

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.70  E-value=5.9e-08  Score=70.67  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=45.1

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 020194           24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (329)
Q Consensus        24 ~~~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~   74 (329)
                      ...+.+|+++|+||||++++++++|+++||||.+++.++.++.+.-.+.|.
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            346789999999999999999999999999999999999888777666654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.65  E-value=1.2e-07  Score=68.49  Aligned_cols=66  Identities=15%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      ++|++.|+||||+++.++++|+++|+||.+...++.++.+.-.+.+..+ .+  . +   .++|++.|.. +++
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~--~-~---~~~l~~~l~~-la~   68 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK--Q-D---FTYLRNEFEA-FGQ   68 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC--C-C---HHHHHHHHHH-HHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cC--C-C---HHHHHHHHHH-HHH
Confidence            6899999999999999999999999999999999998888877777763 12  1 1   3667777766 444

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.61  E-value=1.7e-07  Score=67.59  Aligned_cols=63  Identities=16%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      .+|++.|+||||+.++++++|+++|+||.+.+.++.++.+.-.+.+..+.+.  +..++.+.|+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~--~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ--DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC--CHHHHHHHHHH
Confidence            5799999999999999999999999999999999877777656666544432  12344455443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.25  E-value=1.7e-06  Score=63.62  Aligned_cols=39  Identities=13%  Similarity=0.133  Sum_probs=34.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~  153 (329)
                      ....|.|.|+|||||++.|+++|+++|+||.+.+..+..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            356788999999999999999999999999999988754

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.12  E-value=3.1e-06  Score=62.13  Aligned_cols=48  Identities=15%  Similarity=0.043  Sum_probs=37.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCe----EEEEEEEE
Q 020194          251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE----AYQEFYIR  298 (329)
Q Consensus       251 ~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~----~~D~F~v~  298 (329)
                      ...++|.|+|||||+++|+++|+++|+||....-.|+...    ..+.|+++
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~   57 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA   57 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEE
Confidence            3557788999999999999999999999999998876533    34456653

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.93  E-value=1.4e-05  Score=55.41  Aligned_cols=48  Identities=10%  Similarity=0.021  Sum_probs=43.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeC
Q 020194          253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV  300 (329)
Q Consensus       253 ~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~  300 (329)
                      +|.|.-+||||-|++++++|.+.||||+++-+...++.+.-+|-+.|+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH
Confidence            578999999999999999999999999999999889999988988543

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.91  E-value=2.4e-05  Score=54.17  Aligned_cols=47  Identities=15%  Similarity=0.247  Sum_probs=42.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      +|.|..+|+||-|++++++|++.|+||+...++..++....+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999998888877787754

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.77  E-value=2.4e-05  Score=53.98  Aligned_cols=47  Identities=21%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~   74 (329)
                      -+++|+..||||.|++++++|+..|+||.+-.+....++.+-.+.|.
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            37999999999999999999999999999999886666666667653

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.76  E-value=2.6e-05  Score=54.89  Aligned_cols=49  Identities=8%  Similarity=0.053  Sum_probs=36.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC---CeEEEEEEEEeC
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR---TEAYQEFYIRHV  300 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g---~~~~D~F~v~~~  300 (329)
                      +-|.|.+.||||+|.+|+.+|+++++||......+..   ....-.|++.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            3578999999999999999999999999999877643   235567777665

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.70  E-value=9.2e-05  Score=50.90  Aligned_cols=45  Identities=22%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEE
Q 020194          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (329)
Q Consensus       118 ~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V  162 (329)
                      .+.|...|+||.|++++++|+++|+||.+..+....+...-.+.|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            588999999999999999999999999999988877665555544

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.0003  Score=49.35  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=46.7

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 020194           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (329)
Q Consensus        26 ~~~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~   92 (329)
                      .++.+.+.-.|+||.+++++++|+++|+||...++.+  .+|.++-.+.+   ++. + ++++.+.|++
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D~~-~-~~~vl~~I~~   65 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQD-V-PDDVRTAIAA   65 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SSC-C-CHHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---CCC-c-cHHHHHHHHc
Confidence            3577888999999999999999999999999999976  56666644443   333 2 2456666554

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=0.00027  Score=49.60  Aligned_cols=48  Identities=17%  Similarity=0.312  Sum_probs=39.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEee--CCeEEEEEEE
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHV  162 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~--~~~~~d~f~V  162 (329)
                      +.+.+.+.-.|+||.+++|+.+|+++|+||...++.+.  ++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            45678899999999999999999999999999999875  3444444443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.37  E-value=3.3e-05  Score=54.36  Aligned_cols=39  Identities=18%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-cCCE
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGW   66 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~t-~~g~   66 (329)
                      .-|.|.+.||||+|++++.+++++|.||...+..+ .+|.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~   41 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE   41 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCe
Confidence            35789999999999999999999999999999887 4443

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.33  E-value=0.00062  Score=47.37  Aligned_cols=62  Identities=11%  Similarity=0.140  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEE-EEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~-d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..|.+...|+||+|++|++.|++.|+||.+..+.... ..+. -++.+..        +++.++++.+.|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            4688999999999999999999999999999998643 3443 3444442        24567777777776

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.0004  Score=48.27  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       117 ~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ..+.+...|+||+|+++++.|++.|+||.+..+.... ..+.-+-.+..   |    +++.++++.+.|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhC
Confidence            3678899999999999999999999999999998654 34433223332   2    24567777777766

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=0.00036  Score=48.77  Aligned_cols=63  Identities=14%  Similarity=0.270  Sum_probs=45.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEE-EEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 020194          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAA-AVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (329)
Q Consensus       116 ~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~-d~f~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (329)
                      ...|.+...|+||+|++|++.|++.|+||.+..+..... ... .++.+..    .    ++..+++.+.|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g----~----~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----D----DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----C----TTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc----C----HHHHHHHHHHHhC
Confidence            357899999999999999999999999999999887543 333 3333332    2    2345666555544

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0015  Score=46.19  Aligned_cols=43  Identities=14%  Similarity=0.254  Sum_probs=37.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEE
Q 020194          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA  157 (329)
Q Consensus       115 ~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~  157 (329)
                      ....+.+.-.|+||.+++|+++|+++|+||.+....+.++...
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~   52 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY   52 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE
Confidence            4467888899999999999999999999999998888765433

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0027  Score=44.80  Aligned_cols=43  Identities=12%  Similarity=0.139  Sum_probs=37.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEE
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQE  294 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~  294 (329)
                      ..|.+.-.|+||.|++|+.+|++.|+||......+.++-+.-.
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~   54 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVV   54 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEE
Confidence            5677778999999999999999999999999998887654443

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0012  Score=45.74  Aligned_cols=65  Identities=14%  Similarity=0.186  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      ..+.+...|+||+|.+|+..|+..|+||.+..+.-......-.|-+.-. |    +++..+++...|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~----~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G----DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C----CHHHHHHHHHHHhCC
Confidence            4678889999999999999999999999999988433333333333322 2    234566777776543

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0013  Score=45.85  Aligned_cols=46  Identities=20%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-cCCEEEEEEEE
Q 020194           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-S-DGGWFMDVFNV   73 (329)
Q Consensus        28 ~~v~v~~~Dr~GL~a~i~~~L~~~glnI~~A~i~-t-~~g~~~d~F~V   73 (329)
                      ..+.++..|+||++++++++|+..|+||.+-.+. | ..|..--++.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv   51 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV   51 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE
Confidence            5789999999999999999999999999998887 4 44544333443

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.80  E-value=0.0013  Score=45.75  Aligned_cols=63  Identities=11%  Similarity=0.095  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEE-ecCCe-EEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 020194          252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN-TGRTE-AYQEFYIRHVDGLPISSEAERERVIQCLEAA  321 (329)
Q Consensus       252 t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~-T~g~~-~~D~F~v~~~~g~~l~~~~~~~~l~~~L~~~  321 (329)
                      ..+.+...|+||+|.+|+..|+..|+||.+..+. |.-+. ..=++-+...       ++..+++...|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~-------~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-------DEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-------HHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC-------HHHHHHHHHHHhCC
Confidence            4678999999999999999999999999999987 44333 3334444322       34566777776543

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.0085  Score=43.38  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             CCCeEEEEEEeCCCcchHHHHHHHHhcCCeEEEEEEEEecC-CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 020194          248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLE  319 (329)
Q Consensus       248 ~~~~t~l~v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g-~~~~D~F~v~~~~g~~l~~~~~~~~l~~~L~  319 (329)
                      ....|.|-+..+|+||-|+++...|+++|||+.+..-.-.+ ..-.=.||| |.+|+.  ++ ..+.+.+.|.
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~~--~~-~i~~~l~~L~   81 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKRT--KP-VLGSIIKSLR   81 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGGG--HH-HHHHHHHHHH
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccCC--hH-HHHHHHHHHH
Confidence            34668888888999999999999999999999877755333 344557888 456752  33 3444444444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.43  E-value=0.025  Score=39.25  Aligned_cols=48  Identities=15%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             EEeCCCcchHHHHHHHHhcCCeEEEEEEEEec-CCeEEEEEEEEeCCCCC
Q 020194          256 MRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLP  304 (329)
Q Consensus       256 v~a~DrpGLL~~I~~~l~~~~i~I~~a~I~T~-g~~~~D~F~v~~~~g~~  304 (329)
                      +...|+||-|+++...|+++|||+.+..-.-. +..-+=.|||.= +|+.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~-~g~~   55 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA-DSAI   55 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE-SCCS
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ecCC
Confidence            33469999999999999999999998875533 344566788854 4653

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.19  E-value=0.1  Score=35.95  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=36.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeCC-eEEEEEEEEe
Q 020194          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD  164 (329)
Q Consensus       119 i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~-~~~d~f~V~~  164 (329)
                      +.+...|+||-|+++...|+.+|+|+..-......+ .+.-.|||.-
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            344457999999999999999999998777776544 3567788876

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.96  E-value=0.051  Score=39.01  Aligned_cols=52  Identities=12%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHhCCCcEEEEEEEeeC-CeEEEEEEEEe
Q 020194          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (329)
Q Consensus       113 ~~~~~~i~v~~~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~-~~~~d~f~V~~  164 (329)
                      ....+.|.+..+|+||.|+++...|+.+|+|+..-...... ..+.-.|||.-
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            34568888888999999999999999999998766666543 44566788864

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=88.82  E-value=0.81  Score=29.93  Aligned_cols=45  Identities=9%  Similarity=0.176  Sum_probs=33.2

Q ss_pred             EEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEe
Q 020194          118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (329)
Q Consensus       118 ~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~  164 (329)
                      .|.+.|   .++||+.+++..+|++.|+||.--...+  ....-.|.|..
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~--Se~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS--SEVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS--CSSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC--ccceEEEEEeH
Confidence            567776   5899999999999999999987444333  23445677764

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=88.70  E-value=0.55  Score=30.80  Aligned_cols=60  Identities=17%  Similarity=0.144  Sum_probs=39.8

Q ss_pred             EEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHh
Q 020194           28 TVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL   94 (329)
Q Consensus        28 ~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L   94 (329)
                      ..|++.+   +++||+.+++..+|++.|+||.--...+.. .- .+|.|.+.+.     .+..+.|++.+
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se-~~-Is~~V~~~d~-----~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE-VN-ISFVIDEKDL-----LNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS-SE-EEEEEEGGGH-----HHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc-ce-EEEEEeHHHH-----HHHHHHHHHHH
Confidence            3567776   689999999999999999999844332222 22 2477755433     24555565554

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.00  E-value=0.29  Score=34.37  Aligned_cols=49  Identities=10%  Similarity=0.076  Sum_probs=37.9

Q ss_pred             CeEEEEEEe---CCCcchHHHHHHHHhcCCeEEEEEEEEecCCeEEEEEEEEeCCC
Q 020194          250 DYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDG  302 (329)
Q Consensus       250 ~~t~l~v~a---~DrpGLL~~I~~~l~~~~i~I~~a~I~T~g~~~~D~F~v~~~~g  302 (329)
                      +.+.+.|.+   .++||++++|..+|++.||+|.....+    ...=.|.|.+.+.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S----e~~is~~v~~~~~   63 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKL   63 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGG
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec----CCeEEEEEchhHH
Confidence            678999987   499999999999999999999988632    2234566744433

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.50  E-value=1  Score=31.92  Aligned_cols=64  Identities=13%  Similarity=0.144  Sum_probs=43.2

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       115 ~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      +-..|++.|   +++||+.+++..+|+++|+||.--...+  ....-.|.|..          +..++..+.|.+.+..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~--Se~~Isf~V~~----------~d~~~a~~~L~~~f~~   80 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS--SETNISLVVSE----------EDVDKALKALKREFGD   80 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC--TTCCEEEEECS----------TTHHHHHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC--CcceEEEEEeH----------HHHHHHHHHHHHHHHh
Confidence            567888887   6899999999999999999998543333  22334566643          1234445566666643

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=85.93  E-value=0.78  Score=32.56  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=44.5

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHhcc
Q 020194           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (329)
Q Consensus        26 ~~~~v~v~~---~Dr~GL~a~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~ie~~L~~   96 (329)
                      +...|++.+   +++||+.+++..+|+..|+||.--...+.. . -..|.|...+.     ++..+.|++.+..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se-~-~Isf~V~~~d~-----~~a~~~L~~~f~~   80 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE-T-NISLVVSEEDV-----DKALKALKREFGD   80 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT-C-CEEEEECSTTH-----HHHHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc-c-eEEEEEeHHHH-----HHHHHHHHHHHHh
Confidence            567889987   799999999999999999999854433322 2 22477644322     3566777777644

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.14  E-value=0.46  Score=33.24  Aligned_cols=34  Identities=15%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHhCCCcEEEEE
Q 020194          115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE  148 (329)
Q Consensus       115 ~~~~i~v~~---~Dr~Gll~~i~~~l~~~g~~I~~A~  148 (329)
                      +-+.|.|.+   .++||+++++..+|+++|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            567888887   4999999999999999999998654

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.97  E-value=1.9  Score=28.66  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=40.6

Q ss_pred             EEEEEe--CCCccHHHHHHHHHHhCCCcEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHcC
Q 020194          118 SIEFTG--TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (329)
Q Consensus       118 ~i~v~~--~Dr~Gll~~i~~~l~~~g~~I~~A~i~t~~~~~~d~f~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (329)
                      .|.+.|  .++||+.+++..+|++.|+||.--.-.+  ...--.|.|..          +..++..+.|.+++-.
T Consensus         3 ~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~--se~~Is~vV~~----------~d~~~Av~~Lh~~f~~   65 (75)
T d2cdqa3           3 IISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA--SKVNISFIVNE----------AEAEGCVQALHKSFFE   65 (75)
T ss_dssp             EEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT--TCSEEEEEEEH----------HHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCc--cceEEEEEEeH----------HHHHHHHHHHHHHHhc
Confidence            456666  4688999999999999999987432222  34445666653          3445555667766643