Citrus Sinensis ID: 020230

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQRNAPSAA
ccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHEEEEEEcccccccEEEEEccccHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccHHHHHccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccc
ccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEcccccHHHHHHHHcccccEEEEEEEEEEEEEccEEEEEcHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEcccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHccEEEEEEEcccccccEcccccccccHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHcHHHHHHHHccccccEEccccccc
msfveitepimnvpkRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVailpdvpedhRQILESQgcivreiepvyppenqteFAMAYYVINYSKLRIWEFVEYEKMiyldgdiqvfdnidhlfdapdgyfyAVMDCFcektwsnspqftigycqqcpekvqwpvemgsppplyfnagmfvyepnlltyhdlletvkvtpptifaeQDFLNMYFkdiykpipptyNLVVAMLWRHlenvdvdkVKVVHYCaagskpwrftgkeenmdrTDIKLLVKKWWDIYedesldyknfivpattnseKIGSLFVTALSEDGVVVQQRNAPSAA
msfveitepimnvpKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAagskpwrftgkeenmdrtDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQRNAPSAA
MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQRNAPSAA
****EITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVV**********
************VP*RAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDY**************************************
MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQRNAPSAA
*************PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVV*********
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ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQRNAPSAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q9FXB2335 Galactinol synthase 2 OS= yes no 0.954 0.937 0.794 1e-151
C7G304338 Galactinol synthase 2 OS= N/A no 0.963 0.937 0.777 1e-146
O22893344 Galactinol synthase 1 OS= no no 0.996 0.953 0.748 1e-144
O80518334 Galactinol synthase 3 OS= no no 0.954 0.940 0.738 1e-139
Q8H1S1336 Galactinol synthase 6 OS= no no 0.945 0.925 0.741 1e-138
Q9XGN4333 Galactinol synthase 1 OS= N/A no 0.948 0.936 0.730 1e-137
O22693334 Galactinol synthase 4 OS= no no 0.951 0.937 0.725 1e-137
Q9FFA1333 Galactinol synthase 5 OS= no no 0.924 0.912 0.700 1e-132
F4KED2328 Galactinol synthase 10 OS no no 0.924 0.926 0.695 1e-127
Q9XGN3292 Galactinol synthase 2 (Fr N/A no 0.887 1.0 0.720 1e-126
>sp|Q9FXB2|GOLS2_ARATH Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1 Back     alignment and function desciption
 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/316 (79%), Positives = 280/316 (88%), Gaps = 2/316 (0%)

Query: 15  KRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREI 74
           KRAYVTFLAG GDYVKGVVGLAKGLRKAKS+YPLVVA+LPDVPEDHR+ L  QGC+V+EI
Sbjct: 21  KRAYVTFLAGTGDYVKGVVGLAKGLRKAKSKYPLVVAVLPDVPEDHRKQLVDQGCVVKEI 80

Query: 75  EPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFY 134
           EPVYPPENQTEFAMAYYVINYSKLRIWEFVEY KMIYLDGDIQVFDNIDHLFD P+G FY
Sbjct: 81  EPVYPPENQTEFAMAYYVINYSKLRIWEFVEYNKMIYLDGDIQVFDNIDHLFDLPNGQFY 140

Query: 135 AVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWP-VEMGSPPPLYFNAGMFVYEPNLLTYHD 193
           AVMDCFCEKTWS+SPQ+ IGYCQQCP+KV WP  ++G  PPLYFNAGMFVYEPNL TYH+
Sbjct: 141 AVMDCFCEKTWSHSPQYKIGYCQQCPDKVTWPEAKLGPKPPLYFNAGMFVYEPNLSTYHN 200

Query: 194 LLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCA 253
           LLETVK+ PPT+FAEQDFLNMYFKDIYKPIPP YNLV+AMLWRH EN+++D+VKVVHYCA
Sbjct: 201 LLETVKIVPPTLFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPENIELDQVKVVHYCA 260

Query: 254 AGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTAL 313
           AG+KPWRFTG+EENMDR DIK+LVKKWWDIY DESLDYKN ++  +   ++    F+ AL
Sbjct: 261 AGAKPWRFTGEEENMDREDIKMLVKKWWDIYNDESLDYKNVVIGDSHKKQQTLQQFIEAL 320

Query: 314 SEDGVVVQQRNAPSAA 329
           SE G  +Q   APSAA
Sbjct: 321 SEAG-ALQYVKAPSAA 335
Galactinol synthase involved in the biosynthesis of raffinose family oligosaccharides (RFOs) that function as osmoprotectants. Promotes stress tolerance of factors such as drought, chilling, salinity and methylviologen (MV), a superoxide radical generating drug, by mediating an increase in levels of the endogenous osmoprotective compounds, galactinol and raffinose.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2EC: 3
>sp|C7G304|GOLS2_SOLLC Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1 Back     alignment and function description
>sp|O22893|GOLS1_ARATH Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|O80518|GOLS3_ARATH Galactinol synthase 3 OS=Arabidopsis thaliana GN=GOLS3 PE=1 SV=1 Back     alignment and function description
>sp|Q8H1S1|GOLS6_ARATH Galactinol synthase 6 OS=Arabidopsis thaliana GN=GOLS6 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGN4|GOLS1_AJURE Galactinol synthase 1 OS=Ajuga reptans GN=GOLS1 PE=1 SV=1 Back     alignment and function description
>sp|O22693|GOLS4_ARATH Galactinol synthase 4 OS=Arabidopsis thaliana GN=GOLS4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFA1|GOLS5_ARATH Galactinol synthase 5 OS=Arabidopsis thaliana GN=GOLS5 PE=2 SV=1 Back     alignment and function description
>sp|F4KED2|GOLSA_ARATH Galactinol synthase 10 OS=Arabidopsis thaliana GN=GOLS10 PE=3 SV=1 Back     alignment and function description
>sp|Q9XGN3|GOLS2_AJURE Galactinol synthase 2 (Fragment) OS=Ajuga reptans GN=GOLS2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
224108808325 predicted protein [Populus trichocarpa] 0.987 1.0 0.808 1e-156
255556498318 conserved hypothetical protein [Ricinus 0.963 0.996 0.813 1e-154
224101499325 predicted protein [Populus trichocarpa] 0.987 1.0 0.778 1e-149
18874402331 galactinol synthase [Cucumis melo] 0.960 0.954 0.796 1e-149
167858183337 galactinol synthase 3 [Populus trichocar 0.948 0.925 0.817 1e-149
15223567335 galactinol synthase 2 [Arabidopsis thali 0.954 0.937 0.794 1e-149
449441518331 PREDICTED: galactinol synthase 2-like [C 0.960 0.954 0.793 1e-149
224124982337 predicted protein [Populus trichocarpa] 0.948 0.925 0.817 1e-149
224064647337 predicted protein [Populus trichocarpa] 0.969 0.946 0.778 1e-148
345114183337 galactinol synthase II [Populus alba x P 0.948 0.925 0.814 1e-148
>gi|224108808|ref|XP_002314975.1| predicted protein [Populus trichocarpa] gi|222864015|gb|EEF01146.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/329 (80%), Positives = 295/329 (89%), Gaps = 4/329 (1%)

Query: 1   MSFVEITEPIMNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDH 60
           MS   I EP  N  KRAYVTFLAGNGDYVKGVVGLAKGLRKAKS YPL+VAILPDVPE+H
Sbjct: 1   MSPNAIIEPTFNSHKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSSYPLMVAILPDVPEEH 60

Query: 61  RQILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFD 120
           R+ILESQGCIVREIEPVYPP+NQT+FAMAYYVINYSKLRIWEFV+YEKMIYLDGDIQVFD
Sbjct: 61  RKILESQGCIVREIEPVYPPDNQTQFAMAYYVINYSKLRIWEFVDYEKMIYLDGDIQVFD 120

Query: 121 NIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAG 180
           NIDHLFD P+GYFYAVMDCFCEKTWS++PQ+ IGYCQQCPEKV+WP EMGSPPPLYFNAG
Sbjct: 121 NIDHLFDEPNGYFYAVMDCFCEKTWSSTPQYQIGYCQQCPEKVRWPKEMGSPPPLYFNAG 180

Query: 181 MFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLEN 240
           MFV+EP LLTY DLLET+KVTPPT FAEQDFLNM+F+D+YKPIP  YNLV AMLWRH EN
Sbjct: 181 MFVFEPKLLTYFDLLETLKVTPPTSFAEQDFLNMFFRDVYKPIPAVYNLVSAMLWRHPEN 240

Query: 241 VDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATT 300
            ++DKVKVVHYCAAG+KPWR+TGKEENMDR DI++LVKKWW+IYEDESLDYKN  VP   
Sbjct: 241 FELDKVKVVHYCAAGAKPWRYTGKEENMDREDIQVLVKKWWEIYEDESLDYKNITVP--V 298

Query: 301 NSEKIGSLFVTALSEDGVVVQQRNAPSAA 329
           + EK+G L + AL++DG V+  RN PSAA
Sbjct: 299 DQEKLGPL-IAALTDDG-VINHRNLPSAA 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556498|ref|XP_002519283.1| conserved hypothetical protein [Ricinus communis] gi|223541598|gb|EEF43147.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224101499|ref|XP_002312306.1| predicted protein [Populus trichocarpa] gi|222852126|gb|EEE89673.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18874402|gb|AAL78687.1| galactinol synthase [Cucumis melo] Back     alignment and taxonomy information
>gi|167858183|gb|ACA04032.1| galactinol synthase 3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15223567|ref|NP_176053.1| galactinol synthase 2 [Arabidopsis thaliana] gi|75173054|sp|Q9FXB2.1|GOLS2_ARATH RecName: Full=Galactinol synthase 2; Short=AtGolS2; Short=GolS-2 gi|9954752|gb|AAG09103.1|AC009323_14 Putative galactinol synthase [Arabidopsis thaliana] gi|15215762|gb|AAK91426.1| At1g56600/F25P12_16 [Arabidopsis thaliana] gi|16323314|gb|AAL15412.1| At1g56600/F25P12_16 [Arabidopsis thaliana] gi|17298125|dbj|BAB78531.1| galactinol synthase [Arabidopsis thaliana] gi|332195292|gb|AEE33413.1| galactinol synthase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441518|ref|XP_004138529.1| PREDICTED: galactinol synthase 2-like [Cucumis sativus] gi|449484955|ref|XP_004157029.1| PREDICTED: galactinol synthase 2-like [Cucumis sativus] gi|29569824|gb|AAO84915.1| galactinol synthase [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124982|ref|XP_002319473.1| predicted protein [Populus trichocarpa] gi|222857849|gb|EEE95396.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064647|ref|XP_002301531.1| predicted protein [Populus trichocarpa] gi|222843257|gb|EEE80804.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345114183|gb|AEN74906.1| galactinol synthase II [Populus alba x Populus grandidentata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2027549335 GolS2 "galactinol synthase 2" 0.984 0.967 0.768 1.8e-142
TAIR|locus:2062860344 GolS1 "AT2G47180" [Arabidopsis 0.996 0.953 0.751 7.4e-137
TAIR|locus:2012320334 GolS3 "galactinol synthase 3" 0.954 0.940 0.741 5.6e-132
TAIR|locus:2136829336 GolS6 "galactinol synthase 6" 0.945 0.925 0.747 1.9e-129
TAIR|locus:2036576334 GolS4 "galactinol synthase 4" 0.951 0.937 0.731 2.5e-129
UNIPROTKB|Q9XGN4333 GOLS1 "Galactinol synthase 1" 0.948 0.936 0.730 3.2e-129
TAIR|locus:2172848333 GolS5 "AT5G23790" [Arabidopsis 0.945 0.933 0.716 1.3e-123
UNIPROTKB|Q9XGN3292 GOLS2 "Galactinol synthase 2" 0.887 1.0 0.720 4.7e-119
TAIR|locus:2145855328 GolS10 "galactinol synthase 10 0.920 0.923 0.699 1.3e-118
TAIR|locus:2195668332 GolS7 "galactinol synthase 7" 0.984 0.975 0.649 1.1e-117
TAIR|locus:2027549 GolS2 "galactinol synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 253/329 (76%), Positives = 286/329 (86%)

Query:     5 EITEPIMNVP---KRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHR 61
             ++T P+ +     KRAYVTFLAG GDYVKGVVGLAKGLRKAKS+YPLVVA+LPDVPEDHR
Sbjct:     8 KLTVPVHSATGGEKRAYVTFLAGTGDYVKGVVGLAKGLRKAKSKYPLVVAVLPDVPEDHR 67

Query:    62 QILESQGCIVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDN 121
             + L  QGC+V+EIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEY KMIYLDGDIQVFDN
Sbjct:    68 KQLVDQGCVVKEIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYNKMIYLDGDIQVFDN 127

Query:   122 IDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWP-VEMGSPPPLYFNAG 180
             IDHLFD P+G FYAVMDCFCEKTWS+SPQ+ IGYCQQCP+KV WP  ++G  PPLYFNAG
Sbjct:   128 IDHLFDLPNGQFYAVMDCFCEKTWSHSPQYKIGYCQQCPDKVTWPEAKLGPKPPLYFNAG 187

Query:   181 MFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLEN 240
             MFVYEPNL TYH+LLETVK+ PPT+FAEQDFLNMYFKDIYKPIPP YNLV+AMLWRH EN
Sbjct:   188 MFVYEPNLSTYHNLLETVKIVPPTLFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPEN 247

Query:   241 VDVDKVKVVHYCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATT 300
             +++D+VKVVHYCAAG+KPWRFTG+EENMDR DIK+LVKKWWDIY DESLDYKN ++  + 
Sbjct:   248 IELDQVKVVHYCAAGAKPWRFTGEEENMDREDIKMLVKKWWDIYNDESLDYKNVVIGDSH 307

Query:   301 NSEKIGSLFVTALSEDGVVVQQRNAPSAA 329
               ++    F+ ALSE G + Q   APSAA
Sbjct:   308 KKQQTLQQFIEALSEAGAL-QYVKAPSAA 335
GO:0005634 "nucleus" evidence=ISM
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0047216 "inositol 3-alpha-galactosyltransferase activity" evidence=IDA
GO:0006012 "galactose metabolic process" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009409 "response to cold" evidence=IMP
TAIR|locus:2062860 GolS1 "AT2G47180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012320 GolS3 "galactinol synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136829 GolS6 "galactinol synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036576 GolS4 "galactinol synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN4 GOLS1 "Galactinol synthase 1" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2172848 GolS5 "AT5G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XGN3 GOLS2 "Galactinol synthase 2" [Ajuga reptans (taxid:38596)] Back     alignment and assigned GO terms
TAIR|locus:2145855 GolS10 "galactinol synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195668 GolS7 "galactinol synthase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C7G304GOLS2_SOLLC2, ., 4, ., 1, ., 1, 2, 30.77740.96350.9378N/Ano
Q8H1S1GOLS6_ARATH2, ., 4, ., 1, ., 1, 2, 30.74130.94520.9255nono
O80518GOLS3_ARATH2, ., 4, ., 1, ., 1, 2, 30.73830.95440.9401nono
Q9FXB2GOLS2_ARATH2, ., 4, ., 1, ., 1, 2, 30.79430.95440.9373yesno
Q947G8GOLS1_SOLLC2, ., 4, ., 1, ., 1, 2, 30.61780.90270.9339N/Ano
O22693GOLS4_ARATH2, ., 4, ., 1, ., 1, 2, 30.72550.95130.9371nono
O22893GOLS1_ARATH2, ., 4, ., 1, ., 1, 2, 30.74850.99690.9534nono
Q9XGN4GOLS1_AJURE2, ., 4, ., 1, ., 1, 2, 30.73010.94830.9369N/Ano
Q9XGN3GOLS2_AJURE2, ., 4, ., 1, ., 1, 2, 30.72050.88751.0N/Ano
Q9FFA1GOLS5_ARATH2, ., 4, ., 1, ., 1, 2, 30.70060.92400.9129nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_X000590
galactinol synthase (EC-2.4.1.123) (325 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
PLN00176333 PLN00176, PLN00176, galactinol synthase 0.0
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 7e-91
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 8e-62
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 9e-18
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-12
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 8e-12
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 5e-10
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 4e-08
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information 
 Score =  670 bits (1730), Expect = 0.0
 Identities = 260/316 (82%), Positives = 283/316 (89%), Gaps = 3/316 (0%)

Query: 14  PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVRE 73
            KRAYVTFLAGNGDYVKGVVGLAKGLRK KS YPLVVA+LPDVPE+HR+IL SQGCIVRE
Sbjct: 21  AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVRE 80

Query: 74  IEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYF 133
           IEPVYPPENQT+FAMAYYVINYSKLRIWEFVEY KMIYLDGDIQVF+NIDHLFD PDGYF
Sbjct: 81  IEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYF 140

Query: 134 YAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYHD 193
           YAVMDCFCEKTWS++PQ+ IGYCQQCP+KV WP E+G PPPLYFNAGMFV+EP+L TY D
Sbjct: 141 YAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLYFNAGMFVFEPSLSTYED 200

Query: 194 LLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVHYCA 253
           LLET+K+TPPT FAEQDFLNM+F+DIYKPIPP YNLV+AMLWRH ENV++DKVKVVHYCA
Sbjct: 201 LLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHPENVELDKVKVVHYCA 260

Query: 254 AGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTAL 313
           AGSKPWR+TGKEENMDR DIK+LVKKWWDIY DESLDYKNF VPA     K+   F+ AL
Sbjct: 261 AGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYKNF-VPADEEEVKLQP-FIAAL 318

Query: 314 SEDGVVVQQRNAPSAA 329
           SE G VV    APSAA
Sbjct: 319 SEAG-VVSYVPAPSAA 333

Length = 333
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
PLN02523559 galacturonosyltransferase 99.96
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.96
PLN02718603 Probable galacturonosyltransferase 99.96
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.95
PLN02867535 Probable galacturonosyltransferase 99.94
PLN02659534 Probable galacturonosyltransferase 99.94
PLN02769629 Probable galacturonosyltransferase 99.94
PLN02870533 Probable galacturonosyltransferase 99.94
PLN02742534 Probable galacturonosyltransferase 99.93
PLN02829639 Probable galacturonosyltransferase 99.92
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.91
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.63
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 99.16
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.28
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 98.01
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 97.34
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 95.81
PF07801142 DUF1647: Protein of unknown function (DUF1647); In 95.25
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 94.27
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 90.39
KOG4748364 consensus Subunit of Golgi mannosyltransferase com 85.22
PLN03181453 glycosyltransferase; Provisional 80.69
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-65  Score=474.91  Aligned_cols=316  Identities=81%  Similarity=1.419  Sum_probs=279.9

Q ss_pred             CCCCCeEEEEEeeeCcccHHHHHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHcCcEEEEeeecCCCCchhhhhhcc
Q 020230           11 MNVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQTEFAMAY   90 (329)
Q Consensus        11 ~~~~~~a~vT~l~~d~~Y~~~a~vli~SL~~~~~~~~i~vlv~~~ls~~~~~~L~~~~~~i~~v~~~~~~~~~~~~~~~~   90 (329)
                      +..+++||||+|++|++|++|+.+|++||+++++.+++++++++++++++++.|++.|+.+++|+++.+++++.++..++
T Consensus        18 ~~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~   97 (333)
T PLN00176         18 AKPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAY   97 (333)
T ss_pred             cccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccch
Confidence            34679999999999999999999999999999999999999999999999999999999999999887665555555555


Q ss_pred             ccccccceecccccccceeEEEecceeeccCchhhhCCCCCceeeeechhccCCCCCCCCccccccccCCCccCCCcccC
Q 020230           91 YVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMG  170 (329)
Q Consensus        91 ~~~~y~KL~i~~L~~ydrVLYLDaD~lv~~dl~eLf~~~~~~iaAv~d~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~lg  170 (329)
                      ...+|+||++|+|.+||||||||||+||++||++||+++.+.+|||.||+|+..+++++++.+++|+.+|++.+||..+|
T Consensus        98 ~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g  177 (333)
T PLN00176         98 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELG  177 (333)
T ss_pred             hhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhcc
Confidence            67789999999999999999999999999999999999877899999999998899999999999999999999998777


Q ss_pred             CCCCCcccceEEEEecChHhHHHHHHHHhcCCCCCCCChHHHHHHhcCceeecCCCCCcchhhhhhccccCCCCCeEEEE
Q 020230          171 SPPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKDIYKPIPPTYNLVVAMLWRHLENVDVDKVKVVH  250 (329)
Q Consensus       171 ~~~~~yfNsGVmlin~~~~~~~~ll~~~~~~~~~~~~DQdiLN~~f~~~~~~Lp~~yN~~~~~~~~~~~~~~~~~~~IiH  250 (329)
                      .++..||||||||+||+.++++++++.++.+....|+|||+||.+|.++|..||.+||++..+.|++++.++.++++|||
T Consensus       178 ~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~~~~~~~~~vkIIH  257 (333)
T PLN00176        178 PPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHPENVELDKVKVVH  257 (333)
T ss_pred             CCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhChhhcccCCcEEEE
Confidence            65678999999999999999999999987766678999999999999999999999999988878888777778999999


Q ss_pred             eeCCCCCCCccCCCCCCCCchhhHHHHHHHHHHHhccccccccccCCcCCCccccccchhhhcccCccccccccCCCCC
Q 020230          251 YCAAGSKPWRFTGKEENMDRTDIKLLVKKWWDIYEDESLDYKNFIVPATTNSEKIGSLFVTALSEDGVVVQQRNAPSAA  329 (329)
Q Consensus       251 f~g~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (329)
                      |+|+..|||+..+.++++++++...+.++||++|+++..+.|+..... ...++. .-|+.|++|.|+ |.-..|||||
T Consensus       258 Y~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~  333 (333)
T PLN00176        258 YCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYKNFVPAD-EEEVKL-QPFIAALSEAGV-VSYVPAPSAA  333 (333)
T ss_pred             eeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhcccccccccccccc-cccccc-chhhhhcccccc-cccccCCCCC
Confidence            996357999998888899888888999999999999999999887653 223333 357789999996 5556699997

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 5e-17
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 5e-17
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 6e-17
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 1e-16
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 6e-16
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 7e-16
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 8e-16
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 9e-16
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 9e-16
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 1e-15
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 1e-15
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 1e-15
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 1e-15
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 2e-15
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 7e-04
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 9e-04
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 67/302 (22%)
Query: 12  NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILES--QGC 69
           ++  +A+VT L  N  Y KG + L   L++ ++   LVV   P V +  R++LE+     
Sbjct: 22  SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 70  IVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
           I+ ++       + T        +  +KL  W   +Y K +++D D  V  NID LFD  
Sbjct: 81  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPP----PLYFNAGMFVYE 185
                                                 E+ + P    P  FN+G+FVY+
Sbjct: 141 --------------------------------------ELSAAPDPGWPDCFNSGVFVYQ 162
Query: 186 PNLLTYHDLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLEN 240
           P++ TY+ LL            +Q  LN +F      DI K +P  YNL    ++ +L  
Sbjct: 163 PSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPA 222
Query: 241 VDV--DKVKVVHYCAAGSKPWRFT-----------GKEENMDRTDIKLLVKKWWDIYEDE 287
             V     KVVH+     KPW +T             + NM   +  +L   WW+I+   
Sbjct: 223 FKVFGASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPEFLIL---WWNIFTTN 278
Query: 288 SL 289
            L
Sbjct: 279 VL 280
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 4e-54
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 6e-54
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 1e-17
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
 Score =  177 bits (449), Expect = 4e-54
 Identities = 75/301 (24%), Positives = 118/301 (39%), Gaps = 59/301 (19%)

Query: 12  NVPKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIV 71
           ++  +A+VT L  N  Y KG + L   L++ ++   LVV   P V +  R++LE+    V
Sbjct: 1   SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59

Query: 72  REIEPVYPP--ENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAP 129
             ++ +      + T        +  +KL  W   +Y K +++D D  V  NID LFD  
Sbjct: 60  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119

Query: 130 DGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLL 189
           +    A  D                                   P  FN+G+FVY+P++ 
Sbjct: 120 E--LSAAPDPG--------------------------------WPDCFNSGVFVYQPSVE 145

Query: 190 TYHDLLETVKVTPPTIFAEQDFLNMYF-----KDIYKPIPPTYNLVVAMLWRHLENVDV- 243
           TY+ LL            +Q  LN +F      DI K +P  YNL    ++ +L    V 
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 205

Query: 244 -DKVKVVHYCAAGSKPWRFT-----------GKEENMDRTDIKLLVKKWWDIYEDESLDY 291
               KVVH+     KPW +T             + NM   +    +  WW+I+    L  
Sbjct: 206 GASAKVVHFLGR-VKPWNYTYDPKTKSVKSEAHDPNMTHPE---FLILWWNIFTTNVLPL 261

Query: 292 K 292
            
Sbjct: 262 L 262
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=4.9e-47  Score=344.32  Aligned_cols=241  Identities=30%  Similarity=0.514  Sum_probs=196.5

Q ss_pred             CCeEEEEEeeeCcccHHHHHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHcCcEEEEeeecCCCCc--hhhhhhccc
Q 020230           14 PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPEN--QTEFAMAYY   91 (329)
Q Consensus        14 ~~~a~vT~l~~d~~Y~~~a~vli~SL~~~~~~~~i~vlv~~~ls~~~~~~L~~~~~~i~~v~~~~~~~~--~~~~~~~~~   91 (329)
                      ++.|||| +++|++|+++++|+++||++++++++++++++++++++.+++|++.+.+++.|+.+..+..  ...+..+..
T Consensus         3 ~~~AyvT-l~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~   81 (263)
T 3u2u_A            3 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL   81 (263)
T ss_dssp             TTEEEEE-EESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG
T ss_pred             cceEEEE-EEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch
Confidence            5899999 5689999999999999999999999999999999999999999999999998887764321  111223345


Q ss_pred             cccccceecccccccceeEEEecceeeccCchhhhCCCCCceeeeechhccCCCCCCCCccccccccCCCccCCCcccCC
Q 020230           92 VINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGS  171 (329)
Q Consensus        92 ~~~y~KL~i~~L~~ydrVLYLDaD~lv~~dl~eLf~~~~~~iaAv~d~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~lg~  171 (329)
                      ..+|+||.+|++.+||||||||+|++|++||++||+.+  .+||++|.                        +||     
T Consensus        82 ~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~--~~aA~~d~------------------------~~~-----  130 (263)
T 3u2u_A           82 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE--ELSAAPDP------------------------GWP-----  130 (263)
T ss_dssp             GGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSC--SSEEEECT------------------------TST-----
T ss_pred             hHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCC--cceEeccC------------------------CCC-----
Confidence            67899999999999999999999999999999999997  48888762                        232     


Q ss_pred             CCCCcccceEEEEecChHhHHHHHHHHhcCCCCCCCChHHHHHHhcC-----ceeecCCCCCcchhhhhhccccCC--CC
Q 020230          172 PPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKD-----IYKPIPPTYNLVVAMLWRHLENVD--VD  244 (329)
Q Consensus       172 ~~~~yfNsGVmlin~~~~~~~~ll~~~~~~~~~~~~DQdiLN~~f~~-----~~~~Lp~~yN~~~~~~~~~~~~~~--~~  244 (329)
                         .|||||||||||+..+++++++.+.++.++.++|||+||.+|.+     +++.||.+||++....|.+...+.  .+
T Consensus       131 ---~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~  207 (263)
T 3u2u_A          131 ---DCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGA  207 (263)
T ss_dssp             ---TSEEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGG
T ss_pred             ---ccccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhcC
Confidence               69999999999999999999999887667788999999999987     789999999999876554332221  56


Q ss_pred             CeEEEEeeCCCCCCCccCCCCCC--------CCchhhHHHHHHHHHHHhccccc
Q 020230          245 KVKVVHYCAAGSKPWRFTGKEEN--------MDRTDIKLLVKKWWDIYEDESLD  290 (329)
Q Consensus       245 ~~~IiHf~g~~~KPW~~~~~~~~--------~~~~~~~~~~~~Ww~y~~~~~~~  290 (329)
                      +++||||+| ..|||+....+..        .....+..+...||..|.+....
T Consensus       208 ~~~IIHf~g-~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~~~~  260 (263)
T 3u2u_A          208 SAKVVHFLG-RVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLP  260 (263)
T ss_dssp             GCSEEECCS-SSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHHHHTGG
T ss_pred             CeEEEEECC-CCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHHHHhhcCc
Confidence            899999999 7999997532110        00001257899999999876543
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 6e-47
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-18
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  157 bits (398), Expect = 6e-47
 Identities = 72/290 (24%), Positives = 111/290 (38%), Gaps = 53/290 (18%)

Query: 15  KRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREI 74
            +A+VT L  N  Y KG + L   L++ ++   L V   P V +  R+ LE     V  +
Sbjct: 3   DQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 75  EPVYPP--ENQTEFAMAYYVINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGY 132
           + +      + T        +  +KL  W   +Y K +++D D  V  NID LF+     
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFERE--E 119

Query: 133 FYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGSPPPLYFNAGMFVYEPNLLTYH 192
             A  D                                   P  FN+G+FVY+P++ TY+
Sbjct: 120 LSAAPDPG--------------------------------WPDCFNSGVFVYQPSVETYN 147

Query: 193 DLLETVKVTPPTIFAEQDFLNMYFK-----DIYKPIPPTYNLVVAMLWRHLENVDV--DK 245
            LL            +Q  LN +F      DI K +P  YNL    ++ +L         
Sbjct: 148 QLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGAN 207

Query: 246 VKVVHYCAAGSKPWRFT----GKEENMDRTDIKL----LVKKWWDIYEDE 287
            KVVH+    +KPW +T     K    +  D  +     +  WWDI+   
Sbjct: 208 AKVVHFL-GQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTS 256
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 85.91
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.3e-42  Score=314.16  Aligned_cols=242  Identities=28%  Similarity=0.481  Sum_probs=191.5

Q ss_pred             CCeEEEEEeeeCcccHHHHHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHcCcEEEEeeecCCCCchh--hhhhccc
Q 020230           14 PKRAYVTFLAGNGDYVKGVVGLAKGLRKAKSEYPLVVAILPDVPEDHRQILESQGCIVREIEPVYPPENQT--EFAMAYY   91 (329)
Q Consensus        14 ~~~a~vT~l~~d~~Y~~~a~vli~SL~~~~~~~~i~vlv~~~ls~~~~~~L~~~~~~i~~v~~~~~~~~~~--~~~~~~~   91 (329)
                      +..|||| +++|++|+++|+|+++||+++++.++++++++++++++.++.|++.+..++.++.+..+....  .....++
T Consensus         2 ~~~A~vt-~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEE-EESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEE-EEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            4689999 568999999999999999999999999989999999999999999999998888776543221  1222456


Q ss_pred             cccccceecccccccceeEEEecceeeccCchhhhCCCCCceeeeechhccCCCCCCCCccccccccCCCccCCCcccCC
Q 020230           92 VINYSKLRIWEFVEYEKMIYLDGDIQVFDNIDHLFDAPDGYFYAVMDCFCEKTWSNSPQFTIGYCQQCPEKVQWPVEMGS  171 (329)
Q Consensus        92 ~~~y~KL~i~~L~~ydrVLYLDaD~lv~~dl~eLf~~~~~~iaAv~d~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~lg~  171 (329)
                      ..+|+||++|++.+||||||||||+||++||++||+.+.  ++|+.+..                               
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~--~~a~~~~~-------------------------------  127 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE--LSAAPDPG-------------------------------  127 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCS--SEEEECSS-------------------------------
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCc--cceeccCC-------------------------------
Confidence            788999999999999999999999999999999999874  57776521                               


Q ss_pred             CCCCcccceEEEEecChHhHHHHHHHHhcCCCCCCCChHHHHHHhcC-----ceeecCCCCCcchhhhhhccccC--CCC
Q 020230          172 PPPLYFNAGMFVYEPNLLTYHDLLETVKVTPPTIFAEQDFLNMYFKD-----IYKPIPPTYNLVVAMLWRHLENV--DVD  244 (329)
Q Consensus       172 ~~~~yfNsGVmlin~~~~~~~~ll~~~~~~~~~~~~DQdiLN~~f~~-----~~~~Lp~~yN~~~~~~~~~~~~~--~~~  244 (329)
                       ...|||||||+++|++++++.+.+.+.+..+..++||+++|..+.+     .+..||..||+.....+.....+  ...
T Consensus       128 -~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (263)
T d1ll2a_         128 -WPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA  206 (263)
T ss_dssp             -STTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGG
T ss_pred             -CcccccCCcEEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcC
Confidence             1268999999999999999999998887766778999999999864     46788899998875544322111  256


Q ss_pred             CeEEEEeeCCCCCCCccCCCCC-C--CC-----chhhHHHHHHHHHHHhcccccc
Q 020230          245 KVKVVHYCAAGSKPWRFTGKEE-N--MD-----RTDIKLLVKKWWDIYEDESLDY  291 (329)
Q Consensus       245 ~~~IiHf~g~~~KPW~~~~~~~-~--~~-----~~~~~~~~~~Ww~y~~~~~~~~  291 (329)
                      +++||||+| ..|||+...... .  ..     ......+.+.||++|+++++.+
T Consensus       207 ~~~iIHf~g-~~KPW~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ww~~~~~~~~~~  260 (263)
T d1ll2a_         207 NAKVVHFLG-QTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPL  260 (263)
T ss_dssp             GCSEEECCS-SCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHH
T ss_pred             CeEEEEeCC-CCCCCCCCCCCCccccccchhhccccHHHHHHHHHHHHhcccccC
Confidence            899999999 799998652110 0  00     0113578889999999987653
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure