Citrus Sinensis ID: 020242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MDRAELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Secondary Structure (PSIPRED)
cccccccccHHHHHccccEEEccEEEEEEccccccEEEEcHHcccccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEcccEEEEEcccccccEEEEcHHHHcccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHccccEEEccEEEEEEccccccEEEEcHHHHHHcccccccccEEcccEEEEEcccEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEEccccccEEcccccccHHHHHcccEEEEccEEEEEEccccccEEEEcHHHHHHcccccccEEccccccEEEEcccEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mdraelisDIDVFLCLFSFFFFTFsvfnfaagnhdvtrvtqssfnacnttsplsrttnspasvtltasgphyficsfpghclggqklainvsargsspapqpsspapqpsgstpspvpapartptpapapapepattptpapasaptptprsaptpaptrqpathvvggalgwtvppnasvgyqnwarnnnfsvgdilvfdyparvhDVVEVTKAAydscnssstiskstnpptritlgtagehyffctfpghcsagqklavnvtggsstapsasppsptatppstttnpppqspgggtappppnssakslgaaSLFTSFLVIVAGLLY
Flexible Loop (DISEMBL)
mdraelisDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACnttsplsrttnsPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAydscnssstiskstnppTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Low Complexity Region (SEG)
MDRAELISDIDvflclfsfffftfsvfnfAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVsargsspapqpsspapqpsgstpspvpapartptpapapapepattptpapasaptptprsaptpaptrqpatHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDscnssstiskstnpptRITLGTAGEHYFFCTFPGHCSAGQKLAVNVtggsstapsasppsptatppstttnpppqspgggtAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Disordered region (IsUnstruct)
*****LISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNAC***************VTLTASGPHYFICSFPGHCLGGQKLAINV*************************************************************************HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSC**************RITLGTAGEHYFFCTFPGHCSAGQKLAVNV************************************************AASLFTSFLVIVAGLL*
Disordered Region (DISOPRED)
*DRAELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV*******************************************ATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVN*************************************************AASLFTSFLVIVAGLLY
Disordered Region (DISEMBL)
MDRAELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNAC************PASVTLTASGPHYFICSFPGHCLGGQKLAINVS**********************************************************************ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYD************NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV**********************************************LGAASLFTSFLVIVAGLLY
Disordered Region (DISPRO)
****ELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR*********************************************PAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG***************************************SAKSLGAASLFTSFLVIVAGLLY
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRAELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q07488	196	Blue copper protein OS=Ar	no	no	0.486	0.816	0.383	1e-19
P00302	107	Stellacyanin OS=Toxicoden	N/A	no	0.306	0.943	0.431	2e-19
P42849	115	Umecyanin OS=Armoracia ru	N/A	no	0.297	0.852	0.454	1e-18
P80728	108	Mavicyanin OS=Cucurbita p	N/A	no	0.316	0.962	0.427	8e-17
Q9SK27	182	Early nodulin-like protei	no	no	0.361	0.653	0.376	1e-16
O80517	202	Uclacyanin-2 OS=Arabidops	no	no	0.300	0.490	0.441	1e-16
Q41001	189	Blue copper protein OS=Pi	N/A	no	0.291	0.507	0.42	2e-16
P29602	137	Cucumber peeling cupredox	N/A	no	0.319	0.766	0.413	3e-16
P00303	96	Basic blue protein OS=Cuc	N/A	no	0.285	0.979	0.386	6e-14
Q8LG89	129	Basic blue protein OS=Ara	no	no	0.288	0.736	0.382	1e-12

>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 167 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTI 226
           VG    WT P +    Y  WA    F VGD L FD+ A  HDV  V++AA+++C     I
Sbjct: 27  VGDDTEWTRPMDPEF-YTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPI 85

Query: 227 SKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV-----TGGSSTAPSASP----- 276
           S  T PP +I L T G  YF CT   HC  GQKL++ V     TGG++    A+P     
Sbjct: 86  SHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITVVAAGATGGATPGAGATPAPGST 145

Query: 277 PSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLL 328
           PS   T P T       S   GT  P  N +A SLG A+   +F+  V  L 
Sbjct: 146 PSTGGTTPPTAGGTTTPSGSSGTTTPAGN-AASSLGGATFLVAFVSAVVALF 196

Probably acts as an electron carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 165 HVVGGALGWTVPPNASVGYQ-NWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSS 223
           + VG + GW VP    V Y   WA N  F +GD+LVF Y  R H+V +VT+  Y SCN +
Sbjct: 3   YTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDT 62

Query: 224 STISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265
           + I+       RI L T G+ Y+ C  P HC  GQK+ +NVT
Sbjct: 63  TPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINVT 104

Toxicodendron vernicifluum (taxid: 4013)

>sp|P42849|UMEC_ARMRU Umecyanin OS=Armoracia rusticana PE=1 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 167 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTI 226
           VGG + W  P +    Y  WA    F VGD L FD+ A +HDV  VTK A+D+C   + I
Sbjct: 5   VGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 63

Query: 227 SKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265
           S  T PP +I L T G  Y+ CT   HC  GQKL++NV 
Sbjct: 64  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 102

Not yet known.

Armoracia rusticana (taxid: 3704)

>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 6/110 (5%)

Query: 164 THVVGGALGWT--VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCN 221
            H VG + GWT  VP +    Y  WA +N F VGD L+F+Y  + H+V++V +  + SCN
Sbjct: 3   VHKVGDSTGWTTLVPYD----YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN 58

Query: 222 SSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTA 271
           SSS  +  T+    I L   G  YF C  PGHC  GQK+ + V  GSS+A
Sbjct: 59  SSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 108

Cucurbita pepo (taxid: 3663)

>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 6/125 (4%)

Query: 167 VGGALG-WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST 225
           VGG  G W +PP++S  +  WA+   F VGD +VF Y +    V+EVTK AY+SCN+++ 
Sbjct: 33  VGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNP 92

Query: 226 ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPPS 285
           ++  T+  T++ L  +G  YF     GHC  GQKL++ V      +P  S  SP  +P  
Sbjct: 93  LANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV-----ISPRHSVISPAPSPVE 147

Query: 286 TTTNP 290
               P
Sbjct: 148 FEDGP 152

Arabidopsis thaliana (taxid: 3702)

>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 170 ALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKS 229
           A+ +T+     V Y  WA    F VGDIL F Y +  H V  V KA YD C++SS+    
Sbjct: 29  AVTYTIEWTTGVDYSGWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDASSSTENH 87

Query: 230 TNPPTRITLGTAGEHYFFCTFPGHC--SAGQKLAVNVTGGSS 269
           ++  T+I L T G +YF C+ PGHC  + G KLAVNV  GS+
Sbjct: 88  SDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVNVVAGSA 129

Probably acts as an electron carrier involved in oxygen activation and/or lignin formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 4/100 (4%)

Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS 224
           + VG   GW +  +    Y  WA +  F+VGD LVF+Y A  H V EV ++ Y SC S +
Sbjct: 27  YTVGDTSGWVIGGD----YSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGN 82

Query: 225 TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
           +IS  +   T I L  AG+HYF C  PGH + G KL++ V
Sbjct: 83  SISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKV 122

Pisum sativum (taxid: 3888)

>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 11/116 (9%)

Query: 161 QPATHVVGGALGWTVP--PNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAY 217
           Q   H+VG   GW+VP  PN    Y  WA    F VGD L F++PA  H+V E+ TK ++
Sbjct: 1   QSTVHIVGDNTGWSVPSSPNF---YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSF 57

Query: 218 DSCN---SSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSST 270
           D+CN   S + + +++  P    L   G HYF CT   HCS GQKL++NV   ++T
Sbjct: 58  DACNFVNSDNDVERTS--PVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANAT 111

Cucumis sativus (taxid: 3659)

>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 222
           A +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  + +CN+
Sbjct: 1   AVYVVGGSGGWTFNT------ESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNT 54

Query: 223 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263
            +     T+   +I L   G+ YF C FPGHC +G K+AVN
Sbjct: 55  PAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94

Cucumis sativus (taxid: 3659)

>sp|Q8LG89|BABL_ARATH Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=1 SV=2

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSC 220
           Q AT+ VG +  WT     +VG   W +  +F  GD+LVF+Y  R+H+VV+V   +Y++C
Sbjct: 32  QAATYTVGDSGIWTFN---AVG---WPKGKHFRAGDVLVFNYNPRMHNVVKVDSGSYNNC 85

Query: 221 NSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV 262
            + +     T+   RITL + G+++F C FP HC +  K+AV
Sbjct: 86  KTPTGAKPYTSGKDRITL-SKGQNFFICNFPNHCESDMKIAV 126

Forms a concentration gradient along the pollen tube growth path, with a lower level in the stigma papilla cell wall and a higher level in the transmitting tract extracellular matix of the style.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
356548479	336	PREDICTED: uncharacterized protein LOC10	0.844	0.827	0.437	7e-55
357478161	370	Blue copper protein [Medicago truncatula	0.878	0.781	0.450	1e-53
350535054	332	dicyanin precursor [Solanum lycopersicum	0.717	0.710	0.444	2e-52
255572517	312	Early nodulin 16 precursor, putative [Ri	0.768	0.810	0.346	5e-42
297743460	624	unnamed protein product [Vitis vinifera]	0.650	0.342	0.399	3e-38
255572515	242	Cucumber peeling cupredoxin, putative [R	0.513	0.698	0.407	9e-34
449436136	437	PREDICTED: uncharacterized protein LOC10	0.589	0.443	0.371	4e-32
356562991	203	PREDICTED: cucumber peeling cupredoxin-l	0.404	0.655	0.517	1e-31
449493701	336	PREDICTED: uncharacterized protein LOC10	0.483	0.473	0.467	1e-29
88683126	160	putative dicyanin blue copper protein pr	0.322	0.662	0.575	9e-29

>gi|356548479|ref|XP_003542629.1| PREDICTED: uncharacterized protein LOC100805802 [Glycine max]

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/304 (43%), Positives = 174/304 (57%), Gaps = 26/304 (8%)

Query: 26  VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
           VFNFA G H+V +VT+S+F+ACN  S +   T+ PA+VTL  +G  Y+ICS   HC  GQ
Sbjct: 59  VFNFATGQHNVAKVTKSAFDACNGGSAVFTLTSGPATVTLNETGEQYYICSVGSHCSAGQ 118

Query: 86  KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           KLAINV+ R SS  P   SPAPQP GS   P        +P P  AP+ ++   P  ++ 
Sbjct: 119 KLAINVN-RASSTGP---SPAPQPRGSGSPP------RASPVPTQAPQASSPTPPPRSAP 168

Query: 146 PTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR 205
                       P+ +PAT +VG   GW VP NAS  Y  WA   NF VGD+LVF+Y + 
Sbjct: 169 APAF-------GPSSEPATFIVGETAGWIVPGNASF-YTAWASGKNFRVGDVLVFNYASN 220

Query: 206 VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265
            H+V EVTKA +D+C+S+S I+  T PP R+TL  +G+H+F C  PGHC  GQKLA+NVT
Sbjct: 221 THNVEEVTKANFDACSSASPIATFTTPPARVTLNKSGQHFFICGIPGHCLGGQKLAINVT 280

Query: 266 GGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVA 325
           G S+  P ++   PT     +          G   PPP NS A SLG   +F + L + A
Sbjct: 281 GSSTATPPSAAAPPTTPSSPSPA--------GAVTPPPQNSGAASLGVVGVFATLLSVAA 332

Query: 326 GLLY 329
              Y
Sbjct: 333 TFFY 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478161|ref|XP_003609366.1| Blue copper protein [Medicago truncatula] gi|355510421|gb|AES91563.1| Blue copper protein [Medicago truncatula]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/315 (45%), Positives = 180/315 (57%), Gaps = 26/315 (8%)

Query: 26  VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
           VFN+A+G HDV +VT++++++CN  + L   TNSPA+VTL  +G   FIC+ PGHC  GQ
Sbjct: 63  VFNYASGQHDVAKVTKTAYDSCNGANTLFTLTNSPATVTLNETGQQNFICAVPGHCSAGQ 122

Query: 86  KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           KL+INV    +SP       AP PS S       P  TP P P PA  PA T    PA A
Sbjct: 123 KLSINVVKASASPVS-----APTPSAS------PPKATPAPTPVPAKSPAPTKAATPAPA 171

Query: 146 PTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR 205
           P+ T    P PAP     T+ VG  +GW +P N +  Y  WA   +F VGDILVF++   
Sbjct: 172 PSTTASPTPAPAPATGRVTYTVGDTIGWIIPSNGTAAYTTWASGKSFKVGDILVFNFQLN 231

Query: 206 VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265
            H+V EVTK  YDSCNS+S I+  +NPP R+TL   G HY+ C  PGHCSAGQKL++NV 
Sbjct: 232 AHNVEEVTKEKYDSCNSTSPIATFSNPPVRVTLNKTGTHYYICGVPGHCSAGQKLSINVG 291

Query: 266 GGSSTAP---------------SASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKS 310
            GSS+                 +  P +  +  P +   P  QSPGG  +PPP NS A S
Sbjct: 292 SGSSSPATSPSPSASSPSPSTGATPPSASGSPSPGSPVTPSSQSPGGSVSPPPENSGAAS 351

Query: 311 LGAASLFTSFLVIVA 325
           LG A LF + L I A
Sbjct: 352 LGVAGLFVTVLSIAA 366

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535054|ref|NP_001234429.1| dicyanin precursor [Solanum lycopersicum] gi|7670832|gb|AAF66242.1|AF243180_1 dicyanin [Solanum lycopersicum]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 160/268 (59%), Gaps = 32/268 (11%)

Query: 18  SFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF 77
           SF      VFNF +G+H V  V++ +F++CNT+SP+S +TN P ++TL+++G HY++C+F
Sbjct: 55  SFVVGDILVFNFRSGSHSVAEVSKGAFDSCNTSSPISISTNGPTNITLSSAGSHYYLCTF 114

Query: 78  PGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATT 137
           P HC  GQKLAINVS   S       +        T +PV APA + + APA AP PA+ 
Sbjct: 115 PSHCTLGQKLAINVSGSASPAPQPAPATP-----PTATPVMAPAPSVSVAPATAPSPASV 169

Query: 138 PTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDI 197
                                     T++VG  LGW+VP +    YQ WA N +F VGD 
Sbjct: 170 A------------------------QTYIVGDNLGWSVPTSGPNSYQRWANNKSFKVGDT 205

Query: 198 LVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAG 257
           LVF++    H+V  V+KA+YDSCN++S I+  +N P RI L  +GEHY+ CTFP HCS G
Sbjct: 206 LVFNFVNGTHNVAMVSKASYDSCNTTSPINTISNGPARIRLTNSGEHYYMCTFPRHCSLG 265

Query: 258 QKLAVNVTGGSSTAPSASPPSPTATPPS 285
           QKLA+NVTG   TAP+   PS  ATP S
Sbjct: 266 QKLAINVTGSDVTAPT---PSTAATPSS 290

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572517|ref|XP_002527193.1| Early nodulin 16 precursor, putative [Ricinus communis] gi|223533458|gb|EEF35206.1| Early nodulin 16 precursor, putative [Ricinus communis]

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 149/303 (49%), Gaps = 50/303 (16%)

Query: 26  VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
           VFNF  G  DV RVT+ ++  CN+T+P++  T  PA+ TL  +G ++FI +   HC  GQ
Sbjct: 60  VFNFTTGQQDVARVTKEAYLFCNSTNPIALKTTGPANFTLDTTGAYFFISTMDKHCPLGQ 119

Query: 86  KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           +LAI V+A           P P PS                                   
Sbjct: 120 RLAIYVTA-----------PGPYPS----------------------------------- 133

Query: 146 PTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR 205
             P P +AP+P P R P T+ VG  +GW VPP  ++ Y  WA N  F VGD+LVF++   
Sbjct: 134 --PGPHTAPSPVPNRAPVTYTVGDGMGWIVPPGGALAYMTWAYNKTFIVGDVLVFNFVDG 191

Query: 206 VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT 265
           + DV  VTK AY++CN++STI   +  P  I L   G+++F  T+P  C  GQ+LA+ V 
Sbjct: 192 LQDVALVTKEAYETCNTNSTIQVWSTSPANILLNATGDYFFTSTYPNRCILGQQLAIRVV 251

Query: 266 GGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVA 325
             + T    +PPS    PP+++++       G  APP   SSA S   A  F + + I  
Sbjct: 252 ASTGTGGVLAPPSGIVNPPTSSSSISSLVTEGPAAPPV--SSAPSPAVAGFFITLVSISM 309

Query: 326 GLL 328
            L 
Sbjct: 310 ALF 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743460|emb|CBI36327.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 132/243 (54%), Gaps = 29/243 (11%)

Query: 26  VFNFAAGNHDVTRVTQSSFNACNTTSPL-SRTTNSPASVTLTASGPHYFICSFPGHCLGG 84
           VFNFA   HDV  +++ SF+AC+ +S + S  T  PA++TL  +G HY++C+   HC  G
Sbjct: 61  VFNFATNVHDVAELSKESFDACDFSSTIGSIITTGPANITLATAGNHYYVCTIGSHCTSG 120

Query: 85  QKLAINVSAR-GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 143
           QKLAI+VSA  G+SP          PS ST +P                 P T    + +
Sbjct: 121 QKLAISVSATPGASP----------PSSSTATP----------------PPTTQGGDSSS 154

Query: 144 SAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP 203
           S        A     +     HVVG   GWTVP   +  Y +WA    F VGD LVF++ 
Sbjct: 155 STVFAIVVLAAMLHYSAAQTVHVVGDNTGWTVPQGGAATYTSWASGRQFVVGDTLVFNFA 214

Query: 204 ARVHDVVEVTKAAYDSCNSSSTISK-STNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV 262
             VHDV E++K ++D+C+ SSTI    T  P  ITL TAG HY+ CT   HC++GQKLA+
Sbjct: 215 TNVHDVAELSKESFDACDFSSTIGNIITTGPANITLATAGNHYYVCTIGSHCTSGQKLAI 274

Query: 263 NVT 265
           +V+
Sbjct: 275 SVS 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572515|ref|XP_002527192.1| Cucumber peeling cupredoxin, putative [Ricinus communis] gi|223533457|gb|EEF35205.1| Cucumber peeling cupredoxin, putative [Ricinus communis]

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 115/216 (53%), Gaps = 47/216 (21%)

Query: 161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSC 220
           Q  THVVGGA+GWT+PP  +  Y  WA N  F+ GD+LVF++   +HDV +V+KA YD+C
Sbjct: 25  QTTTHVVGGAVGWTIPPGGATVYSTWAANQTFAAGDVLVFNFANNIHDVAKVSKADYDAC 84

Query: 221 NSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASP---- 276
            S++ IS +   P RIT+  +GEHYF C F GHCSAGQKL +NV+  ++ AP+  P    
Sbjct: 85  ASANPISLAITSPARITINASGEHYFICNFTGHCSAGQKLMINVSAATTPAPAPQPSSPS 144

Query: 277 ----------PSPTATPPSTTTNPP---------------------------------PQ 293
                     P+P+ TP S  ++ P                                   
Sbjct: 145 PPPQSTTTPVPAPSPTPVSAPSSTPVSAPTPSSTATPPTTTATPPTTSTTPPSPTTPSSP 204

Query: 294 SPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY 329
           SP G  APPP +SSAKSLG A L  +FL IV   LY
Sbjct: 205 SPAGANAPPPSDSSAKSLGVAGLSATFLSIVVAFLY 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436136|ref|XP_004135850.1| PREDICTED: uncharacterized protein LOC101207314 [Cucumis sativus]

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 118/242 (48%), Gaps = 48/242 (19%)

Query: 26  VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGG 84
           VFNF     +V RVT+  F+ C+  + +  +  + PA+++L   G ++FI S   HC  G
Sbjct: 60  VFNFTTDKDEVARVTKMGFDMCSDDNEIGDSIETGPATISLLTPGEYFFISSEDRHCQQG 119

Query: 85  QKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 144
           QKLAINV+A     AP P SP   PS + P                 P+           
Sbjct: 120 QKLAINVTA-----APGPRSP---PSSNVP-----------------PQ----------- 143

Query: 145 APTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA 204
                     TPAP R P THVVG   GW +P   +V Y NWA   +F  GD LVF++  
Sbjct: 144 ----------TPAPKRAPVTHVVGDTAGWGIPKGGAVFYSNWAAGKSFLAGDSLVFNFAT 193

Query: 205 RVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263
              DVV V+K ++D CN    I +  +  P  I L T GE+YF     GHC  GQKLA+N
Sbjct: 194 PDDDVVRVSKQSFDLCNDDGEIGEDIDHGPATIPLLTPGEYYFISNEDGHCQQGQKLAIN 253

Query: 264 VT 265
           VT
Sbjct: 254 VT 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562991|ref|XP_003549750.1| PREDICTED: cucumber peeling cupredoxin-like [Glycine max]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 10/143 (6%)

Query: 125 TPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQ 184
           + A APAP+         A++P   PRS P P P+    T+ VG   GW VP NAS  Y 
Sbjct: 19  SEAQAPAPK---------ATSPISPPRSTPAPGPSSGSVTYTVGETAGWIVPGNASF-YP 68

Query: 185 NWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEH 244
            WA   NF VGDILVF+YP+  H+V EVTKA YDSC+S+S I+  T PP R+ L  +GEH
Sbjct: 69  AWASAKNFKVGDILVFNYPSNAHNVEEVTKANYDSCSSASPIATFTTPPARVPLSKSGEH 128

Query: 245 YFFCTFPGHCSAGQKLAVNVTGG 267
           Y+ C  PGHC  GQKL++NVTGG
Sbjct: 129 YYICGIPGHCLGGQKLSINVTGG 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493701|ref|XP_004159419.1| PREDICTED: uncharacterized protein LOC101231385 [Cucumis sativus]

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 10/169 (5%)

Query: 161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSC 220
           +P T++VG + GW VP + +  Y +WA+   F VGD+L F++  + HDV +VTK  Y SC
Sbjct: 178 EPMTYIVGDSFGWNVPTSPTF-YDSWAQGKTFVVGDVLEFNFLIQRHDVAKVTKDNYASC 236

Query: 221 NSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPT 280
           +  S IS +T+PP +ITL   GEH+F CTF GHCS GQKLA+NVTGG     +A+PPS  
Sbjct: 237 SGQSPISLTTSPPVKITLSEPGEHFFICTFAGHCSFGQKLAINVTGG-----TATPPSSI 291

Query: 281 ATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAGLLY 329
           A PPS T    P      T  PPP ++A SL A++ F +FL +   L Y
Sbjct: 292 ALPPSDTVPSTPSP----TTAPPPPNAAASLRASAFFATFLAVAVALFY 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|88683126|emb|CAJ77497.1| putative dicyanin blue copper protein precursor [Solanum tuberosum]

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)

Query: 164 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSS 223
           THVVG  L WTVP   +  Y  WA    F+VGDI+VF++    H V EV+K A+DSCN+S
Sbjct: 28  THVVGDTLNWTVPNGGAASYSTWAAGKTFAVGDIIVFNFRTGSHSVAEVSKGAFDSCNTS 87

Query: 224 STISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSS 269
           S IS STN PT ITL +AG HY+ CTFP HC+ GQKLA+NV+G +S
Sbjct: 88  SPISISTNGPTDITLTSAGSHYYLCTFPSHCTLGQKLAINVSGSTS 133

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2062525	261	UCC1 "uclacyanin 1" [Arabidops	0.291	0.367	0.47	6.5e-19
TAIR|locus:2042426	202	UCC2 "uclacyanin 2" [Arabidops	0.297	0.485	0.398	2e-16
TAIR|locus:2151069	187	AT5G26330 [Arabidopsis thalian	0.291	0.513	0.387	5.4e-15
TAIR|locus:2052866	200	AT2G31050 [Arabidopsis thalian	0.294	0.485	0.4	1.8e-14
TAIR|locus:2040164	182	ENODL14 "early nodulin-like pr	0.297	0.538	0.363	1.3e-13
TAIR|locus:2116767	177	ENODL15 "early nodulin-like pr	0.297	0.553	0.363	1.3e-13
TAIR|locus:4010713753	106	AT3G17675 [Arabidopsis thalian	0.291	0.905	0.35	5.6e-13
TAIR|locus:2085775	203	ENODL9 "early nodulin-like pro	0.294	0.477	0.357	7.1e-13
TAIR|locus:2118691	190	ENODL12 "early nodulin-like pr	0.300	0.521	0.32	9.1e-13
TAIR|locus:2043833	206	AT2G26720 [Arabidopsis thalian	0.294	0.470	0.37	1.5e-12

TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 47/100 (47%), Positives = 54/100 (54%)

Query:   165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
             H +GG  GWTV   AS+  + WA    F+VGD LVF YPA  HDVVEVTK  +D      
Sbjct:    26 HTIGGPSGWTV--GASL--RTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVK 81

Query:   225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                        + L T G+ YF C  PGHCS G KL VNV
Sbjct:    82 PLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2042426 UCC2 "uclacyanin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 41/103 (39%), Positives = 50/103 (48%)

Query:   166 VVGGALG--WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXX 223
             +V GA+   +T+     V Y  WA    F VGDIL F Y +  H V  V KA YD     
Sbjct:    23 IVPGAVAVTYTIEWTTGVDYSGWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDAS 81

Query:   224 XXXXXXXXXXXRITLGTAGEHYFFCTFPGHC--SAGQKLAVNV 264
                        +I L T G +YF C+ PGHC  + G KLAVNV
Sbjct:    82 SSTENHSDGDTKIDLKTVGINYFICSTPGHCRTNGGMKLAVNV 124

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 38/98 (38%), Positives = 50/98 (51%)

Query:   167 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXX 226
             VG + GWT   N  V Y+ WA    F +GD ++F+Y  + H+V+ VT   Y         
Sbjct:    26 VGDSAGWTTIAN--VDYKLWASTKTFHIGDTVLFEYNPQFHNVMRVTHPMYRSCNTSKPI 83

Query:   227 XXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                      ITL   G H+FFC  PGHC AGQKL ++V
Sbjct:    84 STFTTGNDSITLTNHGHHFFFCGVPGHCLAGQKLDLHV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 40/100 (40%), Positives = 48/100 (48%)

Query:   165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
             H VG + GWT+    SV Y+ WA    F VGD LVF Y    HDV EVT   Y+      
Sbjct:    29 HKVGDSDGWTI---MSVNYETWASTITFQVGDSLVFKYNKDFHDVTEVTHNDYEMCEPSK 85

Query:   225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                        + L   G  +F C FPGHC  GQKL ++V
Sbjct:    86 PLARYETGSDIVILTKPGLQHFICGFPGHCDMGQKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/99 (36%), Positives = 50/99 (50%)

Query:   167 VGGALG-WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXX 225
             VGG  G W +PP++S  +  WA+   F VGD +VF Y +    V+EVTK AY+       
Sbjct:    33 VGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLEVTKEAYNSCNTTNP 92

Query:   226 XXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                      ++ L  +G  YF     GHC  GQKL++ V
Sbjct:    93 LANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVV 131

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/99 (36%), Positives = 49/99 (49%)

Query:   167 VGGALG-WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXX 225
             VGG  G W +PP++S  +  WA+   F VGD +VF Y A    V++VT+ AY+       
Sbjct:    29 VGGKSGDWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKCNTTSP 88

Query:   226 XXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                      ++ L  AG  YF     GHC  GQKL + V
Sbjct:    89 KASYTDGNTKVKLDQAGPVYFVSGTEGHCQKGQKLRLVV 127

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

TAIR|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/100 (35%), Positives = 49/100 (49%)

Query:   165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
             H+VG + GW +  N    Y NW +   F VGD+LVF+Y +  H+V++V   AY       
Sbjct:     9 HIVGDSNGWELFTN----YTNWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGLDN 64

Query:   225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                        I L   G+ +F C    HC  GQKL++NV
Sbjct:    65 YTTLFTKGNDSIILSEVGKLWFICGVDDHCVNGQKLSINV 104

GO:0005507 "copper ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 35/98 (35%), Positives = 48/98 (48%)

Query:   167 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXX 226
             VGGA GWTVP  + V Y  WA  + F +GD L+F Y +    V++VT+ AYD        
Sbjct:    32 VGGATGWTVPSGSQV-YSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPT 90

Query:   227 XXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                      +TL  +G +YF      +C   +KL V V
Sbjct:    91 AKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIV 128

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2118691 ENODL12 "early nodulin-like protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 32/100 (32%), Positives = 54/100 (54%)

Query:   166 VVGGALG-WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
             +VGG++G W VP + +    +WA NN F VGD +V+ Y  +V  V++VTK  Y+      
Sbjct:    29 LVGGSVGSWKVPDSPNNTLNHWAENNRFKVGDFIVWKYDMKVDSVLQVTKEDYESCNTAN 88

Query:   225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                       ++ L  +G ++F    PG+C+ G+K+ + V
Sbjct:    89 PLKQYNDGNTKVALDKSGPYFFISGAPGNCAKGEKITLVV 128

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2043833 AT2G26720 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/100 (37%), Positives = 46/100 (46%)

Query:   165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
             H VG   GWT+       Y+ WA +  F VGD LVF Y    HDV EVT   ++      
Sbjct:    29 HKVGNTKGWTM---IGGDYEAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMCESSK 85

Query:   225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                        I+L   G  +F C  PGHC  GQKL ++V
Sbjct:    86 PLRRYKTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.1783.1 hypothetical protein (306 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	3e-35
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	5e-21
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	4e-15
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-10
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-09
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-07
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	4e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	6e-07
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-06
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	1e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	1e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	2e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-05
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	6e-05
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	6e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	7e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-04
PRK14960	702	PRK14960, PRK14960, DNA polymerase III subunits ga	2e-04
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	3e-04
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	3e-04
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-04
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-04
PRK01973	271	PRK01973, PRK01973, septum formation inhibitor; Re	7e-04
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	7e-04
pfam04625	407	pfam04625, DEC-1_N, DEC-1 protein, N-terminal regi	7e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	9e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	9e-04
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.001
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.001
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.001
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.001
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.001
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.001
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	0.001
pfam12200	124	pfam12200, DUF3597, Domain of unknown function (DU	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
TIGR03354	396	TIGR03354, VI_FHA, type VI secretion system FHA do	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.002
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.002
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	0.002
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.002
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	0.002
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.003
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	0.003
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.003
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.003
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.003
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.003
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.003
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.003
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.003
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.004
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	0.004
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.004
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.004
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.004

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score =  122 bits (309), Expect = 3e-35
 Identities = 45/86 (52%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 173 WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNP 232
           WTVP NA   Y  WA    F VGD LVF+Y    H+VVEVTKA Y+SCN+S  I   T  
Sbjct: 1   WTVPLNAD--YTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTG 58

Query: 233 PTRITLGTAGEHYFFCTFPGHCSAGQ 258
              I L   G+HYF C  PGHC  GQ
Sbjct: 59  NDIIPLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score = 85.1 bits (211), Expect = 5e-21
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 26 VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
          VFN+  G H+V  VT++ + +CNT+ P+   T     + LT  G HYFIC  PGHC GGQ
Sbjct: 25 VFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDIIPLTKPGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 45/162 (27%), Positives = 65/162 (40%), Gaps = 19/162 (11%)

Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS 224
           H+VG   GW    N  + Y  WA N  F VGD++ F Y    ++V EV +  YD+C +  
Sbjct: 23  HIVGANKGW----NPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEG 78

Query: 225 TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPTATPP 284
                T+    I L  A  +YF C   G C  G K+ + V       P   PPS TA   
Sbjct: 79  AAGNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILV------HPLPPPPSHTAAAN 131

Query: 285 STTTNPPPQSPGGGTAPPPPNSSAKSLGAASLFTSFLVIVAG 326
                    +     AP   +    +L    L+ + +   +G
Sbjct: 132 G--------AKSHSAAPAAFHKGLVALRGLVLWMASIWFGSG 165

Length = 167

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 24/83 (28%), Positives = 31/83 (37%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
           G      P++ A   + +  +P  APA     APAPAP  A  P   P  A      +AP
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 155 TPAPTRQPATHVVGGALGWTVPP 177
              P    A      A+   V P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 19/76 (25%), Positives = 25/76 (32%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
               ++ A   +S       +     PAPA     APA  P+PA     A A A  P   
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103

Query: 152 SAPTPAPTRQPATHVV 167
           +A  PA          
Sbjct: 104 AAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 20/82 (24%), Positives = 28/82 (34%)

Query: 100 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 159
           P  ++     + +  +   APA  P      AP PA     APA+ P P   +A   AP 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 160 RQPATHVVGGALGWTVPPNASV 181
             PA           V    + 
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           A   +PAP P       + +  +P P PA  P+  PAPAP  A  PT APA AP   P  
Sbjct: 432 APAPAPAPAPP-SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490

Query: 153 APTPAPTRQPAT 164
           A  PA    PA 
Sbjct: 491 AAAPAAPAAPAA 502

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 19/74 (25%), Positives = 29/74 (39%)

Query: 90  NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 149
           + +A  ++ A   ++ +   +        APA  P  A APA  P      A A+AP   
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 150 PRSAPTPAPTRQPA 163
           P +A   AP     
Sbjct: 100 PAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 87  LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR----TPTPAPAPAPEPATTPTPAP 142
           LA+  +      A  P +PAP       + +    R     PT A   A  P     P P
Sbjct: 340 LALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRP 399

Query: 143 ASAPTPTPRSAPTPAPTRQPATHVVGGALGW 173
              P P P  +    P   PA    G AL W
Sbjct: 400 RGPPAPEPARSAEAPPLVAPAAAPAGLALRW 430

Length = 504

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 88  AINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
           A   +A   +PA  P  +PAP P+ + PSP         P+P PA  P+  P PAPA+AP
Sbjct: 415 AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474

Query: 147 TPTPRSAPTPAPTRQPATH 165
            PT   AP P     PA  
Sbjct: 475 EPTAAPAPAPPAAPAPAAA 493

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 23/83 (27%), Positives = 33/83 (39%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
           A   +A  ++ A   +  A   + +  +P PAP     PA  P P  A     APA+ P 
Sbjct: 42  AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101

Query: 148 PTPRSAPTPAPTRQPATHVVGGA 170
               +AP  A      T + G A
Sbjct: 102 AAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 25/91 (27%), Positives = 33/91 (36%)

Query: 87  LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
           LA   +A   + AP       +P  + P+  P       PAPA AP  A +   AP +A 
Sbjct: 362 LAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421

Query: 147 TPTPRSAPTPAPTRQPATHVVGGALGWTVPP 177
            P P +AP  A                  PP
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATT-PTPAPASAPTPTPRSAPT 155
           SPAP+  + A Q S   P   PAPA  P  APA A  PA   P P  A+A     R+AP 
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486

Query: 156 PAPTRQP 162
            AP    
Sbjct: 487 AAPAPAD 493

Length = 700

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 3/87 (3%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
                   A  PS   P P+ ST     A A  P   P           P P + P P  
Sbjct: 365 APQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT 424

Query: 151 RSAPTPAPTRQPATHVVGGALGWTVPP 177
              P  AP    A   V     +T P 
Sbjct: 425 ---PESAPKLTRAAIPVDEKPKYTPPA 448

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
           A   +A   S A    + AP P+ + P+   APA    P PAPAP PA  P     +AP 
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPA 450

Query: 148 PTPRS-APTPAPTRQPAT 164
               S  P  AP+ QPA 
Sbjct: 451 GGAPSPPPAAAPSAQPAP 468

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPR 151
           A  S+PA  P++ AP      P    APA  P PA  A A      P  A A+A      
Sbjct: 53  AAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112

Query: 152 SAPTPAPTRQPATHVV 167
                 P R  A  V 
Sbjct: 113 VEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 23/91 (25%), Positives = 31/91 (34%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            A  ++P P P+  AP          PAPA   TP    A +PA  P  A   A  P+P 
Sbjct: 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Query: 152 SAPTPAPTRQPATHVVGGALGWTVPPNASVG 182
           +        +P             PP  +  
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Length = 824

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            + + + PA  P+S        TPSP  +PA   + APA A E   +P+   A+A  P  
Sbjct: 80  GTGKVAPPAATPTSAP----TPTPSPPASPASGMSAAPASAVEE-KSPSEESATATAPES 134

Query: 151 RSAPTPAPTRQPA-THVVGGALGWTVPPNASVGYQ 184
            S   P+     A T VVG     T+     +GY+
Sbjct: 135 PSTSVPSSGSDAASTLVVGSERETTIEEIMEMGYE 169

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 83  GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAP------APEPAT 136
            GQ + ++ S   + PA  P+  AP  +  T S  PA A  P PA  P      AP  A 
Sbjct: 158 SGQSVPLDTST-TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN 216

Query: 137 TPTPAPASAPTPTPRSAPTPAPTRQPAT 164
             T A  +   P       P PT Q   
Sbjct: 217 VDTAATPAPAAPATPDGAAPLPTDQAGV 244

Length = 331

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 157
           PAPQP+ P    + S   P PAP+  P  A   A  P   P    A+ P   PR    P 
Sbjct: 364 PAPQPAKPTA-AAPSPVRPTPAPSTRPKAAA-AANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 158 PTRQPA 163
           P    +
Sbjct: 422 PHTPES 427

Length = 585

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 22/70 (31%), Positives = 26/70 (37%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            A   S  P   +P   P    P+PV  P   P   P P P+P       PA  P P P 
Sbjct: 79  DAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPV 138

Query: 152 SAPTPAPTRQ 161
                APT +
Sbjct: 139 VEEKAAPTGK 148

Length = 226

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 84  GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSP-VPAPARTPTPAPAPAPEPATTPTPAP 142
           G K  I       + APQPS+ A   S S       A    P  A  PA  P T     P
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSA-AAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPP 432

Query: 143 ASAPTPTPRSAP-----TPAPTRQPAT 164
           A+ P   P +AP           +   
Sbjct: 433 AAVPVNPPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR-TPTPAPAPAPEPATTPTPAPASAPTPT 149
           +  R        +  A  PS +  +P  APA     PA A AP PA  P PAPA AP P 
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA 440

Query: 150 PRSAPTPAPTRQPATHVVGGA 170
           P S    AP     +     A
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAA 461

Length = 824

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 18/71 (25%), Positives = 23/71 (32%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           A  +  A  PS      +       P PA    P P P  +P   P P       P P+ 
Sbjct: 74  AVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKP 133

Query: 153 APTPAPTRQPA 163
            P P    + A
Sbjct: 134 EPKPVVEEKAA 144

Length = 226

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 18/101 (17%)

Query: 86  KLAINVSARGSSPAPQP---SSPAPQPS---GSTPSPVPAPARTPTPA------PAPAPE 133
           +L  + + +   PAP P   +S AP P+    S  S  P  A+ PTPA      PAPAP 
Sbjct: 30  ELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPH 89

Query: 134 PATTPTPAPASAP------TPTPRSAPTPAPTRQPATHVVG 168
            A +  P PA AP       P    A T A     A    G
Sbjct: 90  QAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAG 130

Length = 566

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 53/236 (22%), Positives = 77/236 (32%), Gaps = 21/236 (8%)

Query: 91  VSARGSSPAPQPSS-PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 149
             A    PAP P+  PAP           AP+  P  AP+  P PA    P P +AP P 
Sbjct: 424 APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPA 483

Query: 150 PRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWA------RNNNFSVGDILVFDYP 203
           P +AP PA            A        A++  + W          +     IL+ +  
Sbjct: 484 PPAAPAPAAAPAAPAAPAAPAGA---DDAATL-RERWPEILAAVPKRSRKTWAILLPE-- 537

Query: 204 ARVHDVVEVT-KAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSAGQK 259
           A V  V   T    + +   +   +   N     T +     G+            A   
Sbjct: 538 ATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGAAGG 597

Query: 260 LAVNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAAS 315
                   S     A+ P+  A P +    P   +P G  A P   S+A + G A+
Sbjct: 598 EGPPAPASSGPPEEAARPAAPAAPAA----PAAPAPAGAAAAPAEASAAPAPGVAA 649

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 22/64 (34%)

Query: 102 PSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQ 161
           P++P P+P     S  PA +   T AP  A  P   P   P  A  P    A     T  
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 162 PATH 165
               
Sbjct: 421 QLLA 424

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 94  RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
             ++P P+P  P PQ +    S     A T   AP  AP     P  AP  AP       
Sbjct: 360 HPAAPLPEPEVP-PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418

Query: 154 PTPA 157
            +  
Sbjct: 419 TSQL 422

Length = 647

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 16/69 (23%), Positives = 19/69 (27%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
           S  G    P     AP    +  +P  A A      PA A         A A+ P P   
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 152 SAPTPAPTR 160
             P      
Sbjct: 453 PQPAVRLNS 461

Length = 598

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 91  VSARGSSPA-PQPSSPAPQP-----SGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 144
             A   +PA P+ ++PA  P     +   P+  PA A +   AP  A  PA    PA A 
Sbjct: 374 APAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA- 432

Query: 145 APTPTPRSAPTPAPTRQPATHV 166
           AP   P +AP            
Sbjct: 433 APAAAPAAAPAAVALAPAPPAQ 454

Length = 618

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPA--PAPAPEPATTPTPAPASAPT---PTPRSA 153
           AP P+        +    +P P R P PA   AP   PA  P+PA A  P    P  RSA
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 154 PTP-APTRQPATHVVGGALG 172
           P P +P      +V  G  G
Sbjct: 441 PLPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 46/227 (20%), Positives = 67/227 (29%), Gaps = 12/227 (5%)

Query: 96   SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTP--TPAPASAPTPTPRSA 153
              PAP+PS PA       P   P  AR   P           P     P +     P  +
Sbjct: 2571 PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630

Query: 154  PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 213
            P+PA                    + + G  +  R              P R        
Sbjct: 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPR-----R 2685

Query: 214  KAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPS 273
            +AA  +  S ++++    PP                 PG  +A Q         +  A  
Sbjct: 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745

Query: 274  ASP-----PSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAAS 315
            A P     P+  A PP+T   P P  P    A PP   +  ++ + S
Sbjct: 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 20/66 (30%), Positives = 25/66 (37%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 157
            AP  ++ A   + +     PAP        A A  P   P PAPA A  P   + P  A
Sbjct: 408 AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAA 467

Query: 158 PTRQPA 163
             R  A
Sbjct: 468 GPRPVA 473

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 1/102 (0%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
           + A    +PA  P+ +  +P   PA  P    A     A    PA A A      + P  
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ 454

Query: 157 APTRQPATHV-VGGALGWTVPPNASVGYQNWARNNNFSVGDI 197
           A     A  V V           A       AR      GD+
Sbjct: 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 7/91 (7%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPV-----PAPARTPTPAPAP-APEPATTPTPAPAS 144
             A+ ++ AP P  P P PS    +       P      T  P P  P P   P P    
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE 426

Query: 145 APTPTPRSAPTPAPTRQPATHVVGGALGWTV 175
           +     R+A  P   +   T           
Sbjct: 427 SAPKLTRAA-IPVDEKPKYTPPAPPKEEEKA 456

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPART-----PTPAPAPAPEPATTPTPAP 142
           A  +      P     + + Q + +  + V  P        P  AP  AP      T + 
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 143 ASAPTPTPRSAPTPAPTRQPATHVVGGA 170
             A     + A      ++        A
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRA 449

Length = 647

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 93  ARGSS--PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            RG+   P+    +P P    + P     P     PA   A  PA  P P  A+AP P  
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP-PAR 436

Query: 151 RSAPTPAPT 159
            + P  A +
Sbjct: 437 SADPAAAAS 445

Length = 576

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 4/105 (3%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPE----PATTPTPAPASAPTPTPR 151
              A   S+    P  S+P     P+    P+          P++  +  P  +P     
Sbjct: 174 GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTN 233

Query: 152 SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 196
            +P P P   P   V       T  P         A     ++ D
Sbjct: 234 PSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA-- 145
           A   +A  S+PA  P++  P P  +  +  PA A    PA                 A  
Sbjct: 404 AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463

Query: 146 ----PTPTPRSAPTPAPTRQPATHVVGGALG 172
               P P   SA         A  +     G
Sbjct: 464 VRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPAR-TPTPAPAPAPEPATTPTPAPASAP 146
           A   +A   +  P   + AP  + +  +   APAR +P P    A   A+   P  A AP
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 147 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 180
            P P +AP  A     A      A     P  A+
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Length = 700

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 21/59 (35%)

Query: 100 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 158
           P    P P+    + +P  +   T  P  A AP  A    P PASAP   P        
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 82  LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 141
           L    ++   +A   +      +P+P P+   PS         TP+P PA      P PA
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 142 PASAPTPTPRSAPTPAPT 159
             + P+PTP +    AP 
Sbjct: 420 EPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 115 SPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS-----APTP 156
           S V     TP PAPAPA   A TP    A AP P         AP P
Sbjct: 46  SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMP 92

Length = 153

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 82  LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 141
            GG   A   +A  ++ A + +   P+      +P P P     P P  A +P   P PA
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKA----AAPTPEPPAASKPTPPAAAKP---PEPA 172

Query: 142 PASAPTPTPRSAPTPAPTRQPAT 164
           PA+ P PTP +   P  TR P +
Sbjct: 173 PAAKPPPTPVARADPRETRVPMS 195

Length = 418

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 23/77 (29%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            S  G     +    AP      P+P    A        PAP PA TP    A  P   P
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

Query: 151 RSAPTPAPTRQPATHVV 167
             A   A    PA    
Sbjct: 722 PQAAQGASAPSPAADDP 738

Length = 824

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 104 SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP-TPTPRSAPTPAPT 159
                   + P+  P  A TPTP+P  +P    +  PA A    +P+  SA   AP 
Sbjct: 77  PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 103 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 162
           S P    + + P+  PAPA      P  +  PA    PAPA  P      AP+ A     
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 163 ATHV---VGGALGWTVPPNASVG 182
           AT          G    P    G
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAG 243

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPTPRSAPT 155
           SP+P  SS A QP  S P     PA TP       P       P     A  P       
Sbjct: 399 SPSPSQSSAAAQP--SAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK 456

Query: 156 PAPTRQ 161
             P  +
Sbjct: 457 KIPVSK 462

Length = 614

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 12/77 (15%), Positives = 21/77 (27%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            +   ++P    + P        P+  P  A         +   A       A   T   
Sbjct: 380 SAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

Query: 151 RSAPTPAPTRQPATHVV 167
           +S P  A   +P    +
Sbjct: 440 KSEPAAASRARPVNSAL 456

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 47/233 (20%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 88   AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
            A+   AR     PQ + P            PAP     P       P  +P+PA      
Sbjct: 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

Query: 148  PTPRSAPTPA-PTRQPATHVVG---GALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP 203
              P + P P  P   PA   V     A        AS   Q   R               
Sbjct: 2641 HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR--------------R 2686

Query: 204  ARVHDVVEVTKAA--YDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLA 261
            A    V  +T  A       +      +    T +  G A         P   +     A
Sbjct: 2687 AARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746

Query: 262  VNVTGGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAA 314
               T G    P A PP+    P       P   P      P   S ++S  + 
Sbjct: 2747 GPATPGGPARP-ARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 88   AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
            A   +A    P  + + PA   S +    +P       P P   P P   P P P   P 
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRS-TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

Query: 148  PTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVG 182
            P P   P P P   P T   G        P   +G
Sbjct: 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 50/208 (24%), Positives = 63/208 (30%), Gaps = 15/208 (7%)

Query: 98   PAPQPSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
            PAP     A P P G   +   +PA    PAP   P    TP      A  PT    P P
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

Query: 157  APTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAA 216
            AP   PA    G     T P  AS+     +R +  S  D                  A+
Sbjct: 2770 APPAAPAA---GPPRRLTRPAVASLSE---SRESLPSPWDPADPPAAVLAPAAALPPAAS 2823

Query: 217  YDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASP 276
                    T ++ T PP        G         G  + G  +        S +P+A P
Sbjct: 2824 PAGPLPPPTSAQPTAPPP-----PPGPPPPSLPLGGSVAPGGDVRRR---PPSRSPAAKP 2875

Query: 277  PSPTATPPSTTTNPPPQSPGGGTAPPPP 304
             +P   P      P         A PP 
Sbjct: 2876 AAPARPPVRRLARPAVSRSTESFALPPD 2903

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
                   P    PA  P+   P+PVPA A  P   P P+ EP +   PAP     P   
Sbjct: 399 PGGDDQTRPAAPVPASVPT-PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP 457

Query: 152 SAPTPAPTRQPATHVVGGALGWTVPP 177
           +          AT     AL    PP
Sbjct: 458 ATEPAPDDPDDATRKALDALRERRPP 483

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 103 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT---PAPT 159
           + PA   +     P PA A     APAPA  PA       A+A      +AP    PAP 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 160 RQPATHVVGGALGWTVPPNAS 180
              A            P  A 
Sbjct: 432 ALAAARQASARGPGGAPAPAP 452

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 24/97 (24%), Positives = 27/97 (27%), Gaps = 1/97 (1%)

Query: 84  GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTP-TPAP 142
           G    +      +  A     P    S   P     PA    PA   AP PA     PA 
Sbjct: 579 GGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE 638

Query: 143 ASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNA 179
           ASA      +AP   P          G  GW      
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPA-------RTPTPAPAPAPEPATTPTP 140
           A+      + P P  S+P   P+   P              R      A   EPA     
Sbjct: 390 AVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449

Query: 141 APASAPTPTPRSAPTPAPTRQPATHVVGGALGWT 174
            P ++      ++  PAP+          A  W 
Sbjct: 450 RPVNSALE-RLASVRPAPSALEKAPAKKEAYRWK 482

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 94  RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
             ++P  +      Q   + P P   P   PTP PA AP P  TP P    +  P     
Sbjct: 390 HAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLP----SAEPGSDDG 445

Query: 154 PTPAPTRQPAT 164
           P P P RQP  
Sbjct: 446 PAPPPERQPPA 456

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 84  GQKLAIN-VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP 142
           G+ + +N  S  GS+     + P PQ S   P+P P   +    AP P P P        
Sbjct: 503 GRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQA 562

Query: 143 ASAPTPTPRSAPTPAPTRQP 162
           +S       +  +P P    
Sbjct: 563 SSNAPAQIPADSSPPPPIPE 582

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPT 149
            SA   +P P   +  P P+ + P P  APAR     PAPAP P     P A ++ P   
Sbjct: 385 PSAAWGAPTPAAPAAPP-PAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443

Query: 150 PRSAPT 155
             +   
Sbjct: 444 ASAGDR 449

Length = 576

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 16/34 (47%), Positives = 17/34 (50%)

Query: 126 PAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 159
                 P PA  P PA  SAPTP   +AP PAP 
Sbjct: 47  AVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPA 80

Length = 153

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 20/61 (32%)

Query: 100 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 159
            Q     P  + + P PV  P +T  P     P P  T   AP +     P+        
Sbjct: 123 QQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182

Query: 160 R 160
           +
Sbjct: 183 Q 183

Length = 256

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 14/62 (22%), Positives = 18/62 (29%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
               G      P++ A   + +       PA      P  A   A  P PA A  P    
Sbjct: 400 GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRL 459

Query: 151 RS 152
            S
Sbjct: 460 NS 461

Length = 598

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/64 (34%), Positives = 29/64 (45%)

Query: 86  KLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
                 +        QPS+P  + + +TPSP PA A  P P PA   EP+ TP    A+A
Sbjct: 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANA 435

Query: 146 PTPT 149
           P   
Sbjct: 436 PPSL 439

Length = 620

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 94  RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
           +   P+P      P   G  P    APA    P  A A   A  P  A A+ P     +A
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAP---GAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAA 444

Query: 154 PTPAPTRQPATHVV 167
             PAP   P   V 
Sbjct: 445 APPAPAAAPQPAVR 458

Length = 598

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 100  PQPSSPAPQPSGSTPSPV-----PAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
            P   SPA +P+     PV     PA +R+      P  +P   P P     P P P+  P
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Query: 155  TPAPTRQPAT 164
             P P   P  
Sbjct: 2926 PPQPQPPPPP 2935

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 76  SFPGHCLGGQKLAINVSARGSSPAPQ-PSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP 134
           SFPG        + +     S   P  PS P    S S  S  PAP+   +  P P+PE 
Sbjct: 171 SFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPES 230

Query: 135 ATTPTPAPASAPTPTPRSA-----PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWAR 188
            T P+P P  A  P P         T  PT   A+       G T+  +A    Q  A+
Sbjct: 231 PTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIAKAQKHAK 289

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 3/69 (4%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 158
                +P    +   P P    A   T A APA        P       P     P PA 
Sbjct: 15  EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDK---PRRERKPKPAS 71

Query: 159 TRQPATHVV 167
             +    VV
Sbjct: 72  LWKLEDFVV 80

Length = 475

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPS--PVPAPARTPTPAPAPAPEPA---TTPTPAPASAP 146
           +A   + A    +P        P    VP  +      PA A   A     P PAPA+  
Sbjct: 632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Query: 147 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVG 182
            P   +   PAP                 PP A+ G
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 88  AINVSARGSSPAPQP-SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
           A   SARG   AP P  +PA  P+ +       P      A A     A    PAPA   
Sbjct: 436 ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495

Query: 147 TPTPRSAPTPAPTRQPA 163
            P     P    +  PA
Sbjct: 496 PPPWEELPPEFASPAPA 512

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 25/72 (34%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           A G     Q   P      + P P  A A +P+P+ + A    + P  A   A TP   S
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 153 APTPAPTRQPAT 164
              PA       
Sbjct: 429 VDPPAAVPVNPP 440

Length = 614

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 19/256 (7%)

Query: 75  CSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA---PAPA 131
              PG      +     +   S+ AP   +    P+   PS    P  TP PA   P+PA
Sbjct: 72  PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPA 131

Query: 132 PEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV---GGALGWTVPPNASVGYQNWAR 188
           P+ +    P  +  P P        A     A+        AL  + P   +    +   
Sbjct: 132 PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPA 191

Query: 189 NNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFC 248
               S         P R    +    +A  S  + +    + +     +  ++      C
Sbjct: 192 EPPPSTPPAAASPRPPRRSSPI----SASASSPAPAPGRSAADDAGASSSDSSSSESSGC 247

Query: 249 TFPGHCSAGQKLAVNVT---------GGSSTAPSASPPSPTATPPSTTTNPPPQSPGGGT 299
            +             +T         G +  +    P S +++P   + +P P SPG G 
Sbjct: 248 GWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307

Query: 300 APPPPNSSAKSLGAAS 315
           AP  P +S+ S  +  
Sbjct: 308 APSSPRASSSSSSSRE 323

Length = 1352

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 30/66 (45%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 155
           ++ +  P   A  P  STP+ VP  A+TP P   P   PA      P   P P P + P 
Sbjct: 85  AAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPA 144

Query: 156 PAPTRQ 161
            APT Q
Sbjct: 145 AAPTGQ 150

Length = 226

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
             +    A  P   AP+P+   P PV  PA  P     P  +P    +P  A AP P   
Sbjct: 104 PVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQP-QPEQPLQQPV---SPQVAPAPQPVHS 159

Query: 152 SAPTPAPTRQPATHVVGGALGWTVPPNASV 181
           +        QPA  V          P   +
Sbjct: 160 APQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Length = 333

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 19/76 (25%), Positives = 22/76 (28%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           A   +P P P      P        P     PT  P P P  A TP     +   P P +
Sbjct: 22  AAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAA 81

Query: 153 APTPAPTRQPATHVVG 168
            P        A  V  
Sbjct: 82  PPAAGAALPEALEVPP 97

Length = 306

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 27/96 (28%)

Query: 82  LGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA 141
           +G    A       +  +  P   A +P+       PA       A APA   A      
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 142 PASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPP 177
            A    P   + P  +          GGA     PP
Sbjct: 648 AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP 683

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 91  VSARGSSPAPQPSSPAP----QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
            +A  ++PAP    P P     P  ++P+P    A          P+PAT          
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 147 TPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNW 186
            P P +AP P         V       +      +   +W
Sbjct: 542 APAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDW 581

Length = 700

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 96  SSPAPQPSSPAPQPSG-STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
           S+     ++PAP     +TP+    PA    PAPA  P+      P+ A+  T     AP
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT-PAP 225

Query: 155 TPAPTRQPATHVVGGALGWTVPPNAS 180
               T   A  +     G + P    
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 25/85 (29%), Positives = 30/85 (35%)

Query: 97   SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
            + +    S A  P      P P     P P P P P P   P P P   P P       P
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949

Query: 157  APTRQPATHVVGGALGWTVPPNASV 181
            A   +P+  V    LG  VP   +V
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAV 2974

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 47/232 (20%), Positives = 60/232 (25%), Gaps = 35/232 (15%)

Query: 92   SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            SAR  +P      P      S   P       P P+P+PA        P     P   PR
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP-ERPR 2653

Query: 152  SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVE 211
              P P    +P       A        AS   Q   R               A    V  
Sbjct: 2654 DDPAPGRVSRPRR-----ARRLGRAAQASSPPQRPRR--------------RAARPTVGS 2694

Query: 212  VTKAA--YDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSS 269
            +T  A       +      +    T +  G A         P   +     A   T G  
Sbjct: 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754

Query: 270  TAP-----------SASPPSPTATPPSTTTNPP--PQSPGGGTAPPPPNSSA 308
              P            A P +P A PP   T P     S    + P P + + 
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAP---APAPEPATTPTPAPASAPTPTPRS 152
            S     S+PA       PSP PAP +   P     A  P P       P   P      
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEP 424

Query: 153 APTPAPTRQPAT 164
           +PTP      A 
Sbjct: 425 SPTPPANAANAP 436

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 19/75 (25%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
                       P P+   P P  +  +P P P   P  A   +           +  P 
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 148 PTPRSAPTPAPTRQP 162
                 P+P     P
Sbjct: 580 IPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 98  PAPQPSSPAPQPSGSTPS--PVPAPARTP-TPAPAPAPEPAT-TPTPAPASAPTPTPRSA 153
            AP+P+ PAPQP            P + P +P  APAP+P    P PA  +     P +A
Sbjct: 117 HAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176

Query: 154 PTPAPTRQPATHVVGGALGWTV 175
           P P P  +PA  +        V
Sbjct: 177 PQPEPVAEPAPVMDKPKRKEAV 198

Length = 333

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
            PA QP    P     +P   PAP      AP PA +      P  A  P P    AP  
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVH-SAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Query: 157 APTRQPAT----HVV---GGALG 172
              ++       +V    G  L 
Sbjct: 190 DKPKRKEAVIVMNVAAHHGSELN 212

Length = 333

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 32/152 (21%), Positives = 46/152 (30%), Gaps = 9/152 (5%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
              P P +P P      P P P P +     PA   +   TPT +PA+ P  T      P
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATF---ALP 104

Query: 157 APTRQPATHVVGGALGWTVPP---NASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 213
           A    P      G L     P     +       +         L   Y A     +   
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQ 164

Query: 214 KAAYDSCNSSSTISKSTNPPT--RITLGTAGE 243
           + +    N  S + +  N  T  + T G   +
Sbjct: 165 QQSAQK-NDESQLQQQPNGETPPQQTDGAGDD 195

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 5/130 (3%)

Query: 51  SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPS 110
           +P +R   +  +  + A      +    G  L  +  A   + R  +P   P+ PA    
Sbjct: 382 APGARAAAAVGASAVPAVTA---VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438

Query: 111 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT--PRSAPTPAPTRQPATHVVG 168
           G   +   AP      A A A          P +       P S   P    +PA     
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 169 GALGWTVPPN 178
            +        
Sbjct: 499 PSAATPAAVP 508

Length = 830

>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 92  SARGSSP--APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
           +A+  +P  A QP     QP+   P P P P   P P P P PEP   P P P   P
Sbjct: 388 TAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444

Length = 702

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 82  LGGQKLAINVSARGSSPAPQ--PSSPAPQPSGSTPSPVPAPARTPTPAPAPA-PEPATTP 138
           L  Q+  +N +++ +       P++PA                 PTP   PA  +PA   
Sbjct: 153 LSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNH 212

Query: 139 TPAPASAPTPTPRSAPTPAPTRQPA 163
                 A  P     P        A
Sbjct: 213 HKTATVAVPPATSGKPKSGAASARA 237

Length = 327

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 25/86 (29%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            A   +       PA     +  +P PAPA     APA A      P PA          
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

Query: 152 SAPTPAPTRQPATHVVGGALGWTVPP 177
            A  P    Q A+     A      P
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLP 742

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 19/87 (21%), Positives = 22/87 (25%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
                   A       P  +G      P PA  P    APA      P PAPA+ P    
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 151 RSAPTPAPTRQPATHVVGGALGWTVPP 177
              P   P +                P
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVP 740

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 90  NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT 149
                 ++P+ QP+ PAP  +   P+  PAPA    PAPA AP     P     +    T
Sbjct: 454 PSPPPAAAPSAQPA-PAPAAAPE-PTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Query: 150 PRSA 153
            R  
Sbjct: 512 LRER 515

Length = 824

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 17/69 (24%), Positives = 23/69 (33%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
           G++ A +    A           P     P PAP   P+P     P P   P     + P
Sbjct: 70  GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

Query: 155 TPAPTRQPA 163
            P P  +P 
Sbjct: 130 APKPEPKPV 138

Length = 226

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 35/223 (15%), Positives = 61/223 (27%), Gaps = 8/223 (3%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           A G++ AP+ ++ A       P   PAP  T       A   A  P  A A A   +   
Sbjct: 405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

Query: 153 APTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV 212
                P     +     +     PP+A+      A   + +    +            + 
Sbjct: 465 ERDAQPPADSGSASAPAS---DAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521

Query: 213 TKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAP 272
             AA      +   + +   P     G A             S+ +          + AP
Sbjct: 522 PAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAP 581

Query: 273 SASPPSPTATPPSTTTNP-----PPQSPGGGTAPPPPNSSAKS 310
           +A+P             P        +P  G A     + ++ 
Sbjct: 582 AAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            A  ++PAP  ++     +    +PVPA A     A +   E    P     SA  P   
Sbjct: 424 EAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483

Query: 152 SAPT----PAPTRQPATHVVGGALGWTVPPNAS 180
           + P     PAP     +     A+     P A+
Sbjct: 484 APPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516

Length = 830

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 157
           P   P    P  + S    VP P  T TPA  PAP       PAPA+AP P+    P  A
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAP---AAAVPAPAAAPPPSDPPQPPRA 140

Query: 158 P 158
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 108 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 164
             +GSTP+  PAPA     A +PA   AT P PA A A       AP  A T+ PA 
Sbjct: 190 SVAGSTPATAPAPASAQPAAQSPA---ATQPEPAAAPAAAKAQAPAPQQAGTQNPAK 243

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 26/83 (31%), Positives = 28/83 (33%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
           +P P     AP      P+     AR P  AP  A  PA  P  A   A  P     P  
Sbjct: 700 APTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 759

Query: 157 APTRQPATHVVGGALGWTVPPNA 179
           AP R        GA     PP A
Sbjct: 760 APGRARPPAAAPGAPTPQPPPQA 782

Length = 991

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 84  GQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 143
           G  L +   A  +  A    + A   + +  +P PAPA    PA A     A       A
Sbjct: 186 GSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Query: 144 S 144
           S
Sbjct: 246 S 246

Length = 547

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 9/76 (11%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA---------PTPT 149
              P   A + +    S   APA  P  AP P  +P    T     A         P   
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAAN 256

Query: 150 PRSAPTPAPTRQPATH 165
              A  P P       
Sbjct: 257 AAKAAKPEPMPDDQQK 272

Length = 423

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/105 (20%), Positives = 30/105 (28%)

Query: 76  SFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA 135
              G            +AR ++PA   +  AP P+G+  +P  A A       AP   P 
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

Query: 136 TTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 180
               P  +      P  A   AP   P                A 
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 95  GSSPAPQPSSP--APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           G+ PA   ++P   P P+ + P+        P  APA AP  A     A A+AP     +
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA-AAARAVAAAPARRSPA 429

Query: 153 APTPAPTRQPATHVVGGALGWTVPPNAS 180
               A  RQ +    GGA      P A+
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAA 457

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 91  VSARGSSPAPQPS--SPAPQPSGSTPS-PVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
            S   SS A QPS    A QP+G+ P+  V  PA  P   P      A  P         
Sbjct: 400 PSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN-PPSTAPQAVRPAQFKEEKKI 458

Query: 148 PTPRSAPTPAPTRQPA 163
           P  + +     T +P 
Sbjct: 459 PVSKVSSLGPSTLRPI 474

Length = 614

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 19/76 (25%), Positives = 27/76 (35%)

Query: 83   GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP 142
             G    +   A  S    + S P+P      P+ V APA    PA +PA       +  P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

Query: 143  ASAPTPTPRSAPTPAP 158
             + P P     P+   
Sbjct: 2837 TAPPPPPGPPPPSLPL 2852

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 46/231 (19%), Positives = 63/231 (27%), Gaps = 38/231 (16%)

Query: 91   VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTPT 149
            VSA    P P  +  A     + P+P   PA   TP  PA    P TT  P PA AP   
Sbjct: 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP-PAPAPPAA 2774

Query: 150  PRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDV 209
            P + P    TR     +         P + +                           D 
Sbjct: 2775 PAAGPPRRLTRPAVASLSESRESLPSPWDPA---------------------------DP 2807

Query: 210  VEVTKAAYDSCNSSSTISKSTNPPTRIT----LGTAGEHYFFCTFPGHCSAGQKLAVNVT 265
                 A   +   +++ +    PPT           G         G  + G  +     
Sbjct: 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

Query: 266  GGSSTAPSASPPSPTAT-----PPSTTTNPPPQSPGGGTAPPPPNSSAKSL 311
              S  A  A+P  P          S +T      P     PP P +     
Sbjct: 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ 2918

Length = 3151

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 113 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR---SAPTPAPTRQPATHVVGG 169
             +   A A        P    A  PTP P +A  PTP      P PAP  +P    V  
Sbjct: 125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR 184

Query: 170 AL 171
           A 
Sbjct: 185 AD 186

Length = 418

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGS-TPSPVPAPARTPTPAPA--PAPEPATTPTPAPAS 144
           A  V A  +      ++ AP+ + +   +   AP   P P        + A    P PA 
Sbjct: 393 ASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452

Query: 145 APTPTPRSAPTPAPTRQPATHVVGGALGW-TVPPNA 179
           A       +       QP       +      PP+A
Sbjct: 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDA 488

Length = 830

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 104 SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP-TPA 157
             A  P+ +      APA     APAPAP  A  P  A  +A     ++   +PA
Sbjct: 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248

Length = 547

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 26/69 (37%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
               +  G +P+P P++         P+  P P   P PAP  AP PA  P    A A  
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 148 PTPRSAPTP 156
                A T 
Sbjct: 504 AGADDAATL 512

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPT---PAPASAPTPT 149
           A      P P++ AP  +   P+  PA       A A A   A  P    PAP +     
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR 437

Query: 150 PRSAPTPAPTRQPATHVVGGALGWTVPPNASV 181
             SA  P     PA            P  A  
Sbjct: 438 QASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP---ATTPTPAPASAPTPTPRSAP 154
           P+   S  A   + + P+P P P+  P P    AP+    ATTP+P PA A  P P  A 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 155 TPAPTRQPAT 164
              P+  P  
Sbjct: 421 PTEPSPTPPA 430

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 113 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT-PRSAPTPAPTRQPAT 164
            P P P PA+    AP+P       PTPAP++ P      + P   P R+ AT
Sbjct: 361 VPVPAPQPAKPTAAAPSPV-----RPTPAPSTRPKAAAAANIPPKEPVRETAT 408

Length = 585

>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPS----PVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
            R +  A      A   + +          A A  P  A AP P PA  P    A + T
Sbjct: 105 DRRAPAAKAADEAAAAAAEAAAPAAAAAAEAAAAAPAAAAAPEPPPAPAPEAVAAQSQT 163

Length = 271

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 26/106 (24%)

Query: 84  GQKLA-INVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP---------E 133
           GQ L  I+  A   + A   ++ A   +    +   A A     A +PA          +
Sbjct: 70  GQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLD 129

Query: 134 PATTPT----------------PAPASAPTPTPRSAPTPAPTRQPA 163
            +                     A A+AP     +AP  AP    A
Sbjct: 130 ASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGA 175

Length = 407

>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 109 PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 163
              S P  + A A  P PAPAPA  P   P PA  +   P P  A  PA   Q A
Sbjct: 95  AMPSMPGLLGAAAPVPAPAPAPAAAPPAAPAPAADTPAAPIP-DAVQPAILGQAA 148

The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Length = 407

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 119 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV-------GGAL 171
           A A       APAP   T    + +    P   +A    P   PAT          G A 
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Query: 172 GWTV 175
            W V
Sbjct: 326 LWFV 329

Length = 656

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 23/96 (23%), Positives = 27/96 (28%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            A G    P P+S  P    + P+   APA    PAPA A       + APA        
Sbjct: 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 152 SAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWA 187
                A            A      P A       A
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688

Length = 824

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
           G S +   ++PA            A A  P  A A A + A     APA+          
Sbjct: 81  GESASDAGAAPAAAA--------EAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPD 132

Query: 155 TPAPT 159
            PA T
Sbjct: 133 IPAGT 137

Length = 464

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 99  APQPSS-----PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
             QP S     PA         P P P   P P P P PEP   P  AP   P P P+  
Sbjct: 44  PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP---PKEAPVVIPKPEPKPK 100

Query: 154 PTPAPTRQP 162
           P P P  +P
Sbjct: 101 PKPKPKPKP 109

Length = 246

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 27  FNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK 86
           F +    ++V  V Q+ ++ C T       T+    + L  +  +YFIC   G C  G K
Sbjct: 54  FRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMK 112

Query: 87  LAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP 132
           + I V        P P  P+   + +      A             
Sbjct: 113 VTILVH-------PLPPPPSHTAAANGAKSHSAAPAAFHKGLVALR 151

Length = 167

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 108 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVV 167
             +G   +P  A       APA AP PA    PA A+AP P     P PAP   PA    
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAA-AAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 168 GGALGWTVPPNASVGYQNWAR 188
            G       P+        A+
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQ 465

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 16/73 (21%), Positives = 22/73 (30%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            + +   PA QP   A   S  +P+        P P   P P  A    P P +      
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Query: 151 RSAPTPAPTRQPA 163
            +A  P       
Sbjct: 770 PAAAPPPSPPSEE 782

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA----PT 147
            A  +  AP  ++PA        +P    A  P   P  A + A+ P+PA        P 
Sbjct: 685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

Query: 148 PTPRSAPTPAPTRQPATHVVGGALGWTVPPNAS 180
           P     P  AP + P       A      P  S
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 97  SPAPQPS---SPAPQP---SGSTPSPVPAP--ARTPTPAPAPAPEPATTPTPAPASAPTP 148
           +P P  S    PAP P   +   P P  AP  A  P P  A A   A     APA A T 
Sbjct: 73  APTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTS 132

Query: 149 TPRSAPTPAPTRQ 161
                P PA   Q
Sbjct: 133 AASKKPDPAAHTQ 145

Length = 566

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 92  SARGSSPAPQP---SSPAPQPSG---STPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           ++    PAP P   +S AP P+       +P P  A   T A      PA   T A +  
Sbjct: 78  ASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKK 137

Query: 146 PTPTPRSAPTPAPT 159
           P P   +  +P P 
Sbjct: 138 PDPAAHTQHSPPPF 151

Length = 566

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 19/54 (35%), Positives = 20/54 (37%)

Query: 110 SGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 163
            G+   P  A       APA  P  A  P P  A A     R AP PAP    A
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAA 432

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 90  NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA---PASAP 146
             +   + P PQ S P P P+   P P         P P P    A++  PA     S+P
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSP 576

Query: 147 TPTPRSAPTPAPTR 160
            P     PTP+PT+
Sbjct: 577 PPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/73 (23%), Positives = 24/73 (32%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
           SA  S  A   +   P P+ +   P      +       A  P+  P  A    P P   
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 152 SAPTPAPTRQPAT 164
           + P+P P    A 
Sbjct: 422 TEPSPTPPANAAN 434

Length = 620

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTP 148
            A Q   P P P    P+P    A TP    APAP PA+       +AP P
Sbjct: 46  SAVQEQVPTPAP---APAPAVPSAPTPVAPAAPAPAPASA-GENVVTAPMP 92

Length = 153

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAP-ASAPTPTPRSAPT 155
                P + AP  + +  +    P +    AP P P  A+ PTP   A  P P P + P 
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 156 PAPT 159
           P P 
Sbjct: 179 PTPV 182

Length = 418

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
           S   SS +   SS + + +  +P P P+ + +P+  P PA   +    P P+ AP+    
Sbjct: 321 SRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAA 380

Query: 152 SAPTPAPTR 160
           SA  P   R
Sbjct: 381 SAGRPTRRR 389

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 14/229 (6%)

Query: 92  SARGSSPAPQPSSPAPQ-PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
           ++  +  +   SS     P  S      AP+  P   P   P  A +P P   S+P    
Sbjct: 157 ASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISAS 216

Query: 151 RSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVV 210
            S+P PAP R  A      +   +   ++  G   W   N   +        P R+ +  
Sbjct: 217 ASSPAPAPGRSAADDAGASSSDSSSSESSGCG---WGPENECPLPRPAPITLPTRIWEAS 273

Query: 211 EVTKAAYD--SCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 268
                +      +SSS+  + +  P+  + G+              ++    +   +  S
Sbjct: 274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGP------APSSPRASSSSSSSRESSSS 327

Query: 269 STAPSASPPSPTATP--PSTTTNPPPQSPGGGTAPPPPNSSAKSLGAAS 315
           ST+ S+      A    PS + +P P  P     P  P    +   A S
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376

Length = 1352

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEP-ATTPTPAPASAPTPTP 150
           +A G +  P  +    +P  + P     PA  P  A  PA  P A TP P P + P P  
Sbjct: 729 AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQ 788

Query: 151 RSAPTPAPTRQP 162
           R    P P   P
Sbjct: 789 RPRGAPTPQPPP 800

Length = 991

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
           A   + PA      +       +++ T  PA A      P   PA+ P P  R
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPAR 318

Length = 656

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPT-PAPASAPTPT 149
            S  G++PA    + A  P+ +  +     A  P    APA E A  P  PA     T T
Sbjct: 84  ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMVTMT 143

Query: 150 PRSA 153
            R A
Sbjct: 144 VREA 147

Length = 464

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/57 (31%), Positives = 20/57 (35%)

Query: 108 QPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 164
             +  T  P PA A T    P P P  A   +P P  AP   P      AP     T
Sbjct: 52  DVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVT 108

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 15/54 (27%), Positives = 17/54 (31%)

Query: 107 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 160
                + P P  A      P P PA   A +P P  A A  P       PA   
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENT 106

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 12/211 (5%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA-- 145
           A+  +   +       +PAPQ      +PV AP +    A     +   +      +A  
Sbjct: 54  ALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMA 113

Query: 146 ---PTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDY 202
              P   PR AP  AP R  +           +   A+V       +   +V + L  D+
Sbjct: 114 LRQPVSVPRQAPAAAPVRAASIPSPAAQ---ALAHAAAVRTAPRQEHALSAVPEQLFADF 170

Query: 203 PARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAV 262
                 V      A      +   + +             +                L  
Sbjct: 171 LTTA-PVPRAPVQAPVVAAPAPVPAIAAALAAHA---AYAQDDDEQLDDDGFDLDDALPQ 226

Query: 263 NVTGGSSTAPSASPPSPTATPPSTTTNPPPQ 293
            +   +      +P +P A        P PQ
Sbjct: 227 ILPPAALPPIVVAPAAPAALAAVAAAAPAPQ 257

Length = 559

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 85  QKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPA-TTPTPAPA 143
             LA  V A        P +   +P    P+  P P   P P   P   P   +    P 
Sbjct: 114 AALAEQVKA----LGANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPP 169

Query: 144 SAPTPTPRSAPTPAPTRQP 162
           +A  P     P P  T Q 
Sbjct: 170 TAFYPGNGVTPPPQVTYQS 188

Length = 475

>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 111 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           G   +  PAPA  P  APA A   A   TP  A++
Sbjct: 11  GEAAAAAPAPAAAPATAPAAAAAAAPAATPPAAAS 45

This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. Length = 124

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 12/56 (21%), Positives = 16/56 (28%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           +  P   +PA QP+   P+  P       P           P   P        RS
Sbjct: 204 TQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 101 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 160
           +P S A     S P   P  AR P  A     EP   P   P   P P P  AP      
Sbjct: 147 EPLSAADLDDLSAPLFPPLDARLPAFAAPIDAEPTMVPPFVPL--PAPEPAPAPASQAPS 204

Query: 161 QPAT 164
             A 
Sbjct: 205 SDAV 208

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 396

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 12/54 (22%), Positives = 18/54 (33%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           +   ++    P  PA   + +     P  A       A A E   TP    A+A
Sbjct: 73  APPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 19/78 (24%), Positives = 24/78 (30%)

Query: 105 PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 164
           PAP  +G    P PA +  P  A  PA   A     APA A      +  + AP    A 
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 165 HVVGGALGWTVPPNASVG 182
                        +    
Sbjct: 650 PEHHPKHVAVPDASDGGD 667

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 54/218 (24%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 93   ARGSSPAPQPSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP---APASAPTP 148
            A+ SSP  +P   A     GS  S    P   PTP PAP    + TP P   A A   +P
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP 2733

Query: 149  TPRSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHD 208
               +AP P     PA     G       P  + G    A     + G       P R   
Sbjct: 2734 ALPAAPAPPAV--PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG-------PPRRLT 2784

Query: 209  VVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 268
               V   + +S  S  +     +PP  +    A                          S
Sbjct: 2785 RPAVASLS-ESRESLPSPWDPADPPAAVLAPAAALP--------------------PAAS 2823

Query: 269  STAPSASPPSPTATPPSTTTNPPPQS--PGGGTAPPPP 304
               P   P S   T P     PPP S   GG  AP   
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 83  GGQKLAINVSARGSSPAPQPSS-PAPQP-SGSTPSPVPAPARTPTPAPAPAPEPATTPTP 140
           G  +         S P P P+  PA  P   +TP P   P     PAP P  +P    T 
Sbjct: 401 GDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE 460

Query: 141 APASAPTPTPRSAPTPAPTRQP 162
                P    R A      R+P
Sbjct: 461 PAPDDPDDATRKALDALRERRP 482

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 12/59 (20%), Positives = 16/59 (27%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 155
                P +P    +  T      P+  P  A  P P PA    P+P             
Sbjct: 381 PNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 127 APAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 163
           +      P   P PAPA    PTP +   PAP    A
Sbjct: 46  SAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASA 82

Length = 153

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 155
           SS +    S         PSP  +P+ +  P PA    P   P P+ A +        PT
Sbjct: 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386

Query: 156 PAPTR 160
               R
Sbjct: 387 RRRAR 391

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 25/89 (28%), Positives = 31/89 (34%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            +  GS+ AP   +P        P      A TP   P      A +   APA+A  P P
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530

Query: 151 RSAPTPAPTRQPATHVVGGALGWTVPPNA 179
            + P       PA    G A    V  NA
Sbjct: 531 EARPPTPAAAAPAARAGGAAAALDVLRNA 559

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 2/80 (2%)

Query: 83  GGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA--PAPAPEPATTPTP 140
           G      +      + A   +        + P      A  P     P  A EPA     
Sbjct: 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 141 APASAPTPTPRSAPTPAPTR 160
             A+ P   P +    A +R
Sbjct: 499 PSAATPAAVPDARAPAAASR 518

Length = 830

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 17/58 (29%), Positives = 20/58 (34%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
           AP      P+P     +  PAPA    P  +    P       PA A  P P   P P
Sbjct: 80  APLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQP 137

Length = 141

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 101 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA--PASAPTPTPRSAPTPAP 158
           QP   AP P    P+  P  A+ P  A   A  PA  P  A  PA+AP      A  P  
Sbjct: 695 QPPPRAPTPM-RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 753

Query: 159 TRQPATHVVGGALGWTVPPNASVG 182
            R PA      A G   PP A+ G
Sbjct: 754 ARPPA-----AAPGRARPPAAAPG 772

Length = 991

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 115 SPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP-ATHV 166
               APA    PA A     A    PAPA A    P +A   A      A H 
Sbjct: 194 VAAAAPAAAAAPAAAAPA-AAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHA 245

Length = 547

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 106 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 165
           A   +    +  PAP+R      + +     T  PA A+A    P + P   P       
Sbjct: 266 ADAAAQPATAA-PAPSRMTDTNDSKSV----TSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Query: 166 VVGGALGWTV 175
               AL + V
Sbjct: 321 RGSAALWFVV 330

Length = 656

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 158
            P  ++PA        +P  A +R   PA  PAP          A       R+A   AP
Sbjct: 53  PPAAAAPAAAQPPPAAAP-AAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 159 TRQPATHVVGGALGWTVPPNA 179
             Q        A         
Sbjct: 112 EAQAPAAPAERAAAENAARRL 132

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 15/92 (16%)

Query: 87  LAINVSARGSSPAPQPSSPAPQPSG-STPSPVPAPAR--------------TPTPAPAPA 131
           LA   +A  ++  P P++     S  + P+  PAP                    A   A
Sbjct: 51  LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 132 PEPATTPTPAPASAPTPTPRSAPTPAPTRQPA 163
           PE      PA  +A     R     A      
Sbjct: 111 PEAQAPAAPAERAAAENAARRLARAAAAAPRP 142

Length = 484

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 95  GSSPAPQPSSPAPQPSGST-PSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
           GS+ AP+ + P P+ S +  P+  P P   P   P P P+P   P   P +   P  R  
Sbjct: 322 GSAEAPE-AQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQPGTRPD 380

Query: 154 PTPAPTRQPATH 165
               P R    H
Sbjct: 381 SPAVPDRPNGRH 392

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 15/73 (20%), Positives = 23/73 (31%)

Query: 100 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 159
           P  +      S  + + +     +            TT +P+P    +PT  S  T   T
Sbjct: 780 PTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTT 839

Query: 160 RQPATHVVGGALG 172
               T   GG  G
Sbjct: 840 SPSQTTTGGGICG 852

Length = 872

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 100 PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAP-------EPATTPTPAPASAPT-PTPR 151
           P+ +      +  TP+  P  A     AP   P       EPA       A+A   P   
Sbjct: 249 PKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALE 308

Query: 152 SAPTPAPTRQPAT 164
             P P    +P  
Sbjct: 309 DKPRPLGIARPGG 321

Length = 400

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 112 STPSPVPA-PARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 170
                V A       PAPAP P     P PA AS   P    AP      +     + G 
Sbjct: 46  EDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIGDLRGELQSMRGM 105

Query: 171 L 171
           L
Sbjct: 106 L 106

Length = 767

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 109 PSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 162
             G  P  +        P PAP P   T   P+P   PTP P + P  A     
Sbjct: 345 SYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPV-RPTPAPSTRPKAAAAANI 397

Length = 585

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 12/79 (15%)

Query: 95  GSSPAPQPSSPAPQPSGSTP----------SPVPAPARTPTPAPAPAPEPATTPTPAPAS 144
           G    P     A Q   + P              AP+  P     P       P PAP  
Sbjct: 48  GDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVE--PEPAPVE 105

Query: 145 APTPTPRSAPTPAPTRQPA 163
            P P P   P P P  Q  
Sbjct: 106 PPKPKPVEKPKPKPKPQQK 124

Length = 226

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 112 STPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA-PTRQPA 163
           +       P+    PAP P  + A   T A A A        P    P R+  
Sbjct: 14  AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERK 66

Length = 475

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 37/203 (18%), Positives = 50/203 (24%), Gaps = 22/203 (10%)

Query: 103 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTP-APASAPTPTP----RSAPTPA 157
            +P           VPAP      A   +  PA T    A  +A  P       +    A
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 158 PTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAY 217
           P   PA              +A V  +  AR               +      E      
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANAR--------------ASADSRCDERDAQPP 471

Query: 218 DSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPP 277
               S+S  +    P                T           A           +A+PP
Sbjct: 472 ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA---VPDARAPAAASREDAPAAAAPP 528

Query: 278 SPTATPPSTTTNPPPQSPGGGTA 300
           +P A PP+     P    GG  A
Sbjct: 529 APEARPPTPAAAAPAARAGGAAA 551

Length = 830

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 85  QKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPAS 144
           Q    N S   ++PA    S   +   +  +    P +  T  PA       T    PA+
Sbjct: 165 QNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPAT 224

Query: 145 APTPTPRSAPTPAPTRQPATH 165
           +  P   +A   A +  PA+H
Sbjct: 225 SGKPKSGAASARALSSAPASH 245

Length = 327

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 121 ARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 170
                PA A AP  A     A A+AP P P +A  PA     A    G A
Sbjct: 194 VAAAAPAAAAAPAAAAPA-AAAAAAPAPAPAAAAAPAAAAPAAAAAPGKA 242

Length = 547

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 157
           P P  +  + +   + P P  +PA  P   P P   P T P P P     P         
Sbjct: 315 PRPDLTPGSAEAPEAQPLPEVSPAENPANNPNPRENPGTRPNPEPDPDLNPDANPDTDGQ 374

Query: 158 PTRQP 162
           P  +P
Sbjct: 375 PGTRP 379

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 127 APAPAPEPATTPTPAPASAPTPTPRSAPTPAPT 159
           APA AP       PAPA+A    P +AP     
Sbjct: 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAE 316

Length = 633

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 119 APARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
           APA  P    A AP PA     APA+AP       
Sbjct: 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318

Length = 633

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 99  APQPSSP-APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP---TPTPRSAP 154
           A       AP+ + + P P  A +      P P P        APA+      P P +AP
Sbjct: 48  AKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAP 107

Query: 155 TPAPTRQPATHVVGGA 170
            PA   +P+      A
Sbjct: 108 APAEPVEPSLAANPFA 123

Length = 931

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 12/40 (30%), Positives = 13/40 (32%)

Query: 106 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           A  P         A      PA A A   A    PA A+A
Sbjct: 36  AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAA 75

Length = 155

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 101 QPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 160
           +  S +P P    P     P  TP  +P  +PE  T P+P    A  P  R+A   AP R
Sbjct: 3   RARSRSPSP----PRRPSPPRPTPPRSPDASPE-ETPPSPPGPGAEPPPGRAAGPAAPRR 57

Query: 161 QPATHVVGGALGWTVPPNASVGYQN 185
           +P     G     + PP   +G  +
Sbjct: 58  RPRGCPAGVTFSSSAPPRPPLGLDD 82

Length = 318

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
           A    A  +   P+  SPA  PS S P+ +   A   +        P   P  APA    
Sbjct: 314 AAEAVAGAAVLGPRAQSPA-TPSSSLPTDIGNKAVVSSAKKEAEEVP-PLPQAAPAVVK- 370

Query: 148 PTPRSAPTPAPTRQPATHVVGGALGWTVP 176
           P P   PTP P    A   +    G   P
Sbjct: 371 PGPMEIPTPVPPPGLAIPSLVAPPGLVAP 399

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 16/34 (47%), Positives = 17/34 (50%)

Query: 113 TPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
           TP   P P  TP P P P P+P   P P PA  P
Sbjct: 919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 265 TGGSSTAPS---ASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKSLGAASL 316
           TG  +TAP    AS P P A PP+     PP       A PP          A L
Sbjct: 899 TGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAEL 953

Length = 991

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 19/75 (25%), Positives = 24/75 (32%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            +   S+P+P    P P P      P PA A    P P      A      P S P+   
Sbjct: 724 AAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

Query: 151 RSAPTPAPTRQPATH 165
             A   AP+      
Sbjct: 784 EMAEDDAPSMDDEDR 798

Length = 824

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 87  LAINVSARGSSPAPQPSS-PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           L I ++      A   ++ P P+   S  +  P PA  P  A + AP+PA  PT   A++
Sbjct: 8   LIITIACINLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPT--SAAS 65

Query: 146 PTPTPRSAPTPAPTRQP 162
             P    APTPA + + 
Sbjct: 66  RKPDLAQAPTPAASEKF 82

Length = 566

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 98  PAPQPSSPA----PQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPRS 152
             PQP        P+  G+ P+ +P+PA  PTP    P    A  P    ASAP      
Sbjct: 398 DLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASG 457

Query: 153 AP 154
            P
Sbjct: 458 KP 459

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 85  QKLAINVSARGSSPAPQPS-SPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPA 143
            ++A   +    +PAP PS  PAP    +  +   A   +P PA A  P P       P+
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPS 425

Query: 144 SAPTPTPRSAPTP 156
             P     +AP  
Sbjct: 426 PTPPANAANAPPS 438

Length = 620

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 16/59 (27%), Positives = 20/59 (33%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
            A  +       + A   + S  +  P PA  P  A A AP P    T  PA      P
Sbjct: 191 VAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAP 249

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASA 145
           A    + A  P+ + P+   A A  P PA A AP  A     A    
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241

Length = 547

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
            A QP++ AP PS        + + T  PA A A        PA    P     
Sbjct: 268 AAAQPATAAPAPS-RMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 13/57 (22%), Positives = 18/57 (31%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           +     P   +   +G  P P PA A   +P P  AP          A A      +
Sbjct: 54  TVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVA 110

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAP-APAPEPATTPTPAPASAPTPTPRSAPTP 156
           PAP     A + +      V   A    P   APA           A        +AP P
Sbjct: 83  PAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRP 142

Query: 157 APTRQPATHV 166
                 A  V
Sbjct: 143 RVPADAAAAV 152

Length = 484

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 122 RTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHV-VGGAL 171
           R+    P   P+P  TP P P   P PTP   PTPA   QP  +  VGG L
Sbjct: 914 RSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPA--YQPVLNAKVGGYL 962

Length = 1250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PLN03148	167	Blue copper-like protein; Provisional	100.0
PLN03148	167	Blue copper-like protein; Provisional	99.97
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.95
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.95
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.17
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	98.16
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.13
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.06
COG3794	128	PetE Plastocyanin [Energy production and conversio	98.01
PRK02710	119	plastocyanin; Provisional	97.89
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	97.86
COG3794	128	PetE Plastocyanin [Energy production and conversio	97.78
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	97.76
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	97.72
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	97.63
PRK02710	119	plastocyanin; Provisional	97.2
TIGR02657	83	amicyanin amicyanin. Members of this family are am	97.09
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	97.07
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	96.62
TIGR02657	83	amicyanin amicyanin. Members of this family are am	96.6
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	95.85
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	95.84
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	94.66
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	92.92
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	92.53
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	92.17
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	92.09
COG4454	158	Uncharacterized copper-binding protein [Inorganic	91.74
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	89.35
COG4454	158	Uncharacterized copper-binding protein [Inorganic	89.11
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	87.74
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	87.35
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	86.18
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	85.43
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	84.8
PRK02888	635	nitrous-oxide reductase; Validated	83.06
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	82.89
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	82.57
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	81.82

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=2e-36  Score=266.02  Aligned_cols=103  Identities=32%  Similarity=0.662  Sum_probs=96.9

Q ss_pred             CCCceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEe
Q 020242          159 TRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITL  238 (329)
Q Consensus       159 ~a~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L  238 (329)
                      .+.+++|+|||+.||+.    ..+|++|+++++|+|||+|+|+|+++.|+|+||++++|++|+..+++..+++|++.|+|
T Consensus        17 ~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L   92 (167)
T PLN03148         17 ATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL   92 (167)
T ss_pred             hccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence            45688999999999984    34799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVTG  266 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~  266 (329)
                      +++|+|||||+ .+||++||||+|+|..
T Consensus        93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         93 NKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             cCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            99999999999 6999999999999953

>PLN03148 Blue copper-like protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=228.51  Aligned_cols=88  Identities=22%  Similarity=0.401  Sum_probs=84.1

Q ss_pred             cccCCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCC
Q 020242            4 AELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG   83 (329)
Q Consensus         4 ~~~~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~   83 (329)
                      |+.+.||+.|+++++|++||+|+|+|..++|+|+||++++|++|+..+++..+++|++.|+|+++|++||||+ .+||++
T Consensus        31 W~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L~~~G~~YFIcg-~ghC~~  109 (167)
T PLN03148         31 WNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPLNKAKRYYFICG-NGQCFN  109 (167)
T ss_pred             cCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEecCCccEEEEcC-CCcccc
Confidence            4457899999999999999999999999999999999999999999999999999999999999999999999 699999


Q ss_pred             CCeEEEEee
Q 020242           84 GQKLAINVS   92 (329)
Q Consensus        84 GmKl~I~V~   92 (329)
                      ||||.|+|.
T Consensus       110 GmKl~I~V~  118 (167)
T PLN03148        110 GMKVTILVH  118 (167)
T ss_pred             CCEEEEEEc
Confidence            999999996

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.95  E-value=1.7e-29  Score=200.24  Aligned_cols=85  Identities=53%  Similarity=1.014  Sum_probs=70.3

Q ss_pred             cccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCC
Q 020242          173 WTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG  252 (329)
Q Consensus       173 W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~  252 (329)
                      |+++.++ .+|++||++++|+|||+|+|+|+.+.|+|+||+|++|++|+..+++..+.+|++.|+|+++|.+||||++++
T Consensus         1 W~~~~~~-~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~   79 (85)
T PF02298_consen    1 WTIPTNA-SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG   79 (85)
T ss_dssp             SSSSSST-THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred             CccCCCc-cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence            7776643 689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 020242          253 HCSAGQ  258 (329)
Q Consensus       253 HC~~Gm  258 (329)
                      ||++||
T Consensus        80 HC~~Gq   85 (85)
T PF02298_consen   80 HCQKGQ   85 (85)
T ss_dssp             TTTTT-
T ss_pred             cccccC
Confidence            999999

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.95  E-value=1.2e-28  Score=195.28  Aligned_cols=78  Identities=38%  Similarity=0.768  Sum_probs=65.4

Q ss_pred             CChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCC
Q 020242            8 SDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ   85 (329)
Q Consensus         8 ~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~Gm   85 (329)
                      .||+.|+++++|+|||+|+|+|..+.|+|+||+|++|++|+..+++..+.+|++.|+|+++|++||||++++||++||
T Consensus         8 ~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~Gq   85 (85)
T PF02298_consen    8 SNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGHCQKGQ   85 (85)
T ss_dssp             THHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTTTTTT-
T ss_pred             cchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCcccccC
Confidence            389999999999999999999999999999999999999999999999999999999999999999999999999999

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.17  E-value=1.3e-05  Score=64.87  Aligned_cols=75  Identities=21%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CCCeeeecCEEEEeeC-CCCceEEEEcccccc------CCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCe
Q 020242          188 RNNNFSVGDILVFDYP-ARVHDVVEVTKAAYD------SCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQK  259 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~-~~~h~V~~V~~~~y~------~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmK  259 (329)
                      +..++++||+|.|..+ ...|+|+..+.. ..      .....+.......| ...++++.+|.|.|+|.  +|+++||+
T Consensus        17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~   93 (99)
T TIGR02656        17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV   93 (99)
T ss_pred             CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence            6789999999999865 367999864321 00      01110000112223 35788889999999998  89999999


Q ss_pred             EEEEec
Q 020242          260 LAVNVT  265 (329)
Q Consensus       260 l~I~V~  265 (329)
                      ..|.|.
T Consensus        94 G~I~V~   99 (99)
T TIGR02656        94 GKITVE   99 (99)
T ss_pred             EEEEEC
Confidence            999984

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>TIGR03102 halo_cynanin halocyanin domain

Probab=98.16  E-value=1.8e-05  Score=66.26  Aligned_cols=89  Identities=25%  Similarity=0.307  Sum_probs=62.3

Q ss_pred             CCceEEEEe--ccC-CcccCCCCCcCcccccCCCeeeecCEEEEeeCC--CCceEEEEccccccCCCCCCCcccCCCC-C
Q 020242          160 RQPATHVVG--GAL-GWTVPPNASVGYQNWARNNNFSVGDILVFDYPA--RVHDVVEVTKAAYDSCNSSSTISKSTNP-P  233 (329)
Q Consensus       160 a~~~~~~VG--g~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~--~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~  233 (329)
                      +...++.||  +.. +..+.+          ...++++||+|.|.++.  ..|+|.-.....|+.    ... ....| .
T Consensus        21 ~~~~~v~~G~~~~~g~~~F~P----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~t   85 (115)
T TIGR03102        21 QDEVTVDVGAEANGGGFAFDP----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGTT   85 (115)
T ss_pred             CceEEEEecccCCCCceeEeC----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCCE
Confidence            355688888  322 344332          56899999999999864  579998543334541    111 12223 5


Q ss_pred             cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          234 TRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       234 ~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..++|+++|.|-|+|..  |=..|||..|.|.
T Consensus        86 ~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~  115 (115)
T TIGR03102        86 YEHTFEEPGIYLYVCVP--HEALGMKGAVVVE  115 (115)
T ss_pred             EEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence            68999999999999984  8778999999984

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.13  E-value=7.7e-06  Score=66.09  Aligned_cols=76  Identities=21%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             CCCeeeecCEEEEee-CCCCceEEEEcccc--ccCCCCCCC---cccCCCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeE
Q 020242          188 RNNNFSVGDILVFDY-PARVHDVVEVTKAA--YDSCNSSST---ISKSTNPP-TRITLGTAGEHYFFCTFPGHCSAGQKL  260 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y-~~~~h~V~~V~~~~--y~~C~~~~~---i~~~~~G~-~~v~L~~~G~~YFic~~~~HC~~GmKl  260 (329)
                      ...++++||+|.|.. ....|+|+.+....  -..+.....   ...+..|. ..++++++|.|.|+|. + |...||+.
T Consensus        17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G   94 (99)
T PF00127_consen   17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG   94 (99)
T ss_dssp             SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred             CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence            678999999999999 57789999876220  001111111   11223343 4678889999999999 7 99999999


Q ss_pred             EEEec
Q 020242          261 AVNVT  265 (329)
Q Consensus       261 ~I~V~  265 (329)
                      .|.|.
T Consensus        95 ~i~V~   99 (99)
T PF00127_consen   95 TIIVE   99 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99984

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.06  E-value=5.9e-06  Score=66.74  Aligned_cols=77  Identities=21%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             cCCCceeeCCEEEEEE-cCCCCcEEEeCcc--cccCCCCCCC---CcccCCCC-cEEEecccCceEEEcCCCCCCCCCCe
Q 020242           14 LCLFSFFFFTFSVFNF-AAGNHDVTRVTQS--SFNACNTTSP---LSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQK   86 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y-~~~~H~V~~V~~~--~y~~C~~~~~---~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmK   86 (329)
                      ....++++||+|.|.. ....|+|+.....  .-..+.....   ......|. ..++++++|.|.|+|. + |...||+
T Consensus        16 P~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~   93 (99)
T PF00127_consen   16 PSEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMV   93 (99)
T ss_dssp             SSEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSE
T ss_pred             CCEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCE
Confidence            4456899999999999 4678999887522  0111211111   11233444 4688889999999999 8 9999999


Q ss_pred             EEEEee
Q 020242           87 LAINVS   92 (329)
Q Consensus        87 l~I~V~   92 (329)
                      ..|.|.
T Consensus        94 G~i~V~   99 (99)
T PF00127_consen   94 GTIIVE   99 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999884

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=98.01  E-value=4.6e-05  Score=64.99  Aligned_cols=70  Identities=21%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEE
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCSAGQKLAVN  263 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~  263 (329)
                      +..++++||+|.|.+... .|||.-+...+.      .....+..+   ..+++++++|.|.|+|.-  |=..|||..|.
T Consensus        54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~------~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~Iv  125 (128)
T COG3794          54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDP------EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIV  125 (128)
T ss_pred             cEEEECCCCEEEEEECCCCCceEEEeCCCCc------ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEE
Confidence            678999999999999877 999997755411      111222222   357889999999999986  99999999999


Q ss_pred             ec
Q 020242          264 VT  265 (329)
Q Consensus       264 V~  265 (329)
                      |.
T Consensus       126 V~  127 (128)
T COG3794         126 VG  127 (128)
T ss_pred             eC
Confidence            85

>PRK02710 plastocyanin; Provisional

Probab=97.89  E-value=0.00011  Score=61.53  Aligned_cols=89  Identities=16%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             CceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeC-CCCceEEEEccccccCCCCCCCcccCCCC-CcEEEe
Q 020242          161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYP-ARVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITL  238 (329)
Q Consensus       161 ~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~-~~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L  238 (329)
                      ...++.+|.+.|+-       .|..  +..++++||+|.|..+ ...|+++.-..   +.....+  .....| ...+++
T Consensus        29 ~~~~V~~~~~~~~~-------~F~P--~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~--~~~~pg~t~~~tF   94 (119)
T PRK02710         29 ETVEVKMGSDAGML-------AFEP--STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD--LAFAPGESWEETF   94 (119)
T ss_pred             ceEEEEEccCCCee-------EEeC--CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc--cccCCCCEEEEEe
Confidence            34466667654442       1332  6789999999999864 46799873211   1110111  112334 367889


Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +.+|.|-|+|.  .|=+.|||..|.|.
T Consensus        95 ~~~G~y~y~C~--~H~~~gM~G~I~V~  119 (119)
T PRK02710         95 SEAGTYTYYCE--PHRGAGMVGKITVE  119 (119)
T ss_pred             cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence            99999999998  79999999999984

>TIGR02375 pseudoazurin pseudoazurin

Probab=97.86  E-value=9.7e-05  Score=61.97  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG  267 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~  267 (329)
                      ...++++||+|.|.+....|+|..+.....+.   .+....-.+....++++++|.|-|+|.  .|=..||+..|.|...
T Consensus        15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~   89 (116)
T TIGR02375        15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP   89 (116)
T ss_pred             CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence            67899999999999987789998643211110   111111123346789999999999998  7999999999999874

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=97.78  E-value=0.0001  Score=62.89  Aligned_cols=71  Identities=17%  Similarity=0.052  Sum_probs=53.1

Q ss_pred             cCCCceeeCCEEEEEEcCC-CCcEEEeCcccccCCCCCCCCcccCCC---CcEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242           14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGHCLGGQKLAI   89 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I   89 (329)
                      .+..++.+||+|.|.+... .|||.-+...+.+      ....+..+   ..+++++.+|.|.|+|.-  |=..|||..|
T Consensus        53 PA~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~------g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~I  124 (128)
T COG3794          53 PAEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE------GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKI  124 (128)
T ss_pred             CcEEEECCCCEEEEEECCCCCceEEEeCCCCcc------cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEE
Confidence            4556899999999999877 8999776443111      11122222   257899999999999985  8889999999


Q ss_pred             Eee
Q 020242           90 NVS   92 (329)
Q Consensus        90 ~V~   92 (329)
                      .|.
T Consensus       125 vV~  127 (128)
T COG3794         125 VVG  127 (128)
T ss_pred             EeC
Confidence            985

>TIGR02375 pseudoazurin pseudoazurin

Probab=97.76  E-value=0.00016  Score=60.75  Aligned_cols=80  Identities=16%  Similarity=0.071  Sum_probs=56.5

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAI   89 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I   89 (329)
                      +..=....++++||+|.|.+....|+|..+.....+.   .+....-.+....++++++|.|-|+|.  .|=..||+..|
T Consensus        10 m~F~P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V   84 (116)
T TIGR02375        10 MVFEPAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALI   84 (116)
T ss_pred             EEEeCCEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEE
Confidence            4444566799999999999987789996542211111   111111122335789999999999999  79999999999


Q ss_pred             EeecC
Q 020242           90 NVSAR   94 (329)
Q Consensus        90 ~V~~~   94 (329)
                      .|...
T Consensus        85 ~Vg~~   89 (116)
T TIGR02375        85 QVGDP   89 (116)
T ss_pred             EECCC
Confidence            99864

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR02656 cyanin_plasto plastocyanin

Probab=97.72  E-value=0.00012  Score=59.13  Aligned_cols=76  Identities=18%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             cCCCceeeCCEEEEEEc-CCCCcEEEeCcccccC------CCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCC
Q 020242           14 LCLFSFFFFTFSVFNFA-AGNHDVTRVTQSSFNA------CNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQ   85 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~-~~~H~V~~V~~~~y~~------C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~Gm   85 (329)
                      ....++++||+|.|.-. ...|+|+-.... ...      ............|. ..++++.+|.|.|+|.  .|++.||
T Consensus        16 P~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM   92 (99)
T TIGR02656        16 PAKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGM   92 (99)
T ss_pred             CCEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCC
Confidence            35579999999999854 357998653211 100      00000001122343 4688999999999999  8999999


Q ss_pred             eEEEEee
Q 020242           86 KLAINVS   92 (329)
Q Consensus        86 Kl~I~V~   92 (329)
                      +..|.|.
T Consensus        93 ~G~I~V~   99 (99)
T TIGR02656        93 VGKITVE   99 (99)
T ss_pred             EEEEEEC
Confidence            9999883

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>TIGR03102 halo_cynanin halocyanin domain

Probab=97.63  E-value=0.00022  Score=59.80  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             hhhccCCCceeeCCEEEEEEcC--CCCcEEEeCcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCe
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAA--GNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQK   86 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmK   86 (329)
                      |..=.+..++++||+|.|.++.  ..|+|.-.....|++     .......| ...++|+++|.|-|+|.  -|=..|||
T Consensus        37 ~~F~P~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~~~~~G~t~s~Tf~~~G~Y~Y~C~--pH~~~gM~  109 (115)
T TIGR03102        37 FAFDPPAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SERVSEEGTTYEHTFEEPGIYLYVCV--PHEALGMK  109 (115)
T ss_pred             eeEeCCEEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----cccccCCCCEEEEEecCCcEEEEEcc--CCCCCCCE
Confidence            4333455699999999999863  579996432234441     11112233 46899999999999998  47678999


Q ss_pred             EEEEee
Q 020242           87 LAINVS   92 (329)
Q Consensus        87 l~I~V~   92 (329)
                      ..|.|.
T Consensus       110 G~I~V~  115 (115)
T TIGR03102       110 GAVVVE  115 (115)
T ss_pred             EEEEEC
Confidence            999983

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>PRK02710 plastocyanin; Provisional

Probab=97.20  E-value=0.0012  Score=55.31  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=51.8

Q ss_pred             hhhccCCCceeeCCEEEEEEc-CCCCcEEEeCcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           10 IDVFLCLFSFFFFTFSVFNFA-AGNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~-~~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      |.......++++||+|.|.-. ...|+++- ..  .+.... ... ....| ..+++++.+|.|.|+|+  .|=+.|||.
T Consensus        42 ~~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~-~~--~~~~~~-~~~-~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G  114 (119)
T PRK02710         42 LAFEPSTLTIKAGDTVKWVNNKLAPHNAVF-DG--AKELSH-KDL-AFAPGESWEETFSEAGTYTYYCE--PHRGAGMVG  114 (119)
T ss_pred             eEEeCCEEEEcCCCEEEEEECCCCCceEEe-cC--Cccccc-ccc-ccCCCCEEEEEecCCEEEEEEcC--CCccCCcEE
Confidence            444566679999999998763 45799853 11  111101 111 12334 35789999999999998  798899999


Q ss_pred             EEEee
Q 020242           88 AINVS   92 (329)
Q Consensus        88 ~I~V~   92 (329)
                      .|.|.
T Consensus       115 ~I~V~  119 (119)
T PRK02710        115 KITVE  119 (119)
T ss_pred             EEEEC
Confidence            99983

>TIGR02657 amicyanin amicyanin

Probab=97.09  E-value=0.0027  Score=49.64  Aligned_cols=71  Identities=18%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEccccccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +..++++||+|.|+.+.. .|+|...+....+ =.....  ....| ...++++++|.|-|.|....    +||..|.|.
T Consensus        11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~   83 (83)
T TIGR02657        11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE   83 (83)
T ss_pred             CEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence            568999999999988754 7999865432111 000111  12233 35789999999999999854    599999884

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>TIGR03095 rusti_cyanin rusticyanin

Probab=97.07  E-value=0.0014  Score=57.13  Aligned_cols=77  Identities=18%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             CCeeeecCEEEEeeCCC----CceEEEEccc-ccc------------CCCCCCCccc--CCCCCcEEEeCCCCcEEEEcC
Q 020242          189 NNNFSVGDILVFDYPAR----VHDVVEVTKA-AYD------------SCNSSSTISK--STNPPTRITLGTAGEHYFFCT  249 (329)
Q Consensus       189 ~~~f~vGD~LvF~y~~~----~h~V~~V~~~-~y~------------~C~~~~~i~~--~~~G~~~v~L~~~G~~YFic~  249 (329)
                      .++++.||+|.|...+.    .|.....++. .+.            .|....+...  ......++++.++|.|||+|.
T Consensus        53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~  132 (148)
T TIGR03095        53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCT  132 (148)
T ss_pred             EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcC
Confidence            36789999999988643    5666654322 110            1211111000  001245778889999999999


Q ss_pred             CCCCCCCCCeEEEEec
Q 020242          250 FPGHCSAGQKLAVNVT  265 (329)
Q Consensus       250 ~~~HC~~GmKl~I~V~  265 (329)
                      +++|=+.||...|.|.
T Consensus       133 ~pgH~~~GM~G~iiV~  148 (148)
T TIGR03095       133 YPGHAENGMYGKIVVK  148 (148)
T ss_pred             ChhHHHCCCEEEEEEC
Confidence            9999999999999873

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR03095 rusti_cyanin rusticyanin

Probab=96.62  E-value=0.0052  Score=53.61  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             CceeeCCEEEEEEcCC----CCcEEEeCcc-cc-----------cC-CCCCCCCc--ccCCCCcEEEecccCceEEEcCC
Q 020242           17 FSFFFFTFSVFNFAAG----NHDVTRVTQS-SF-----------NA-CNTTSPLS--RTTNSPASVTLTASGPHYFICSF   77 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~----~H~V~~V~~~-~y-----------~~-C~~~~~~~--~~~~G~~~v~L~~~G~~yFiCs~   77 (329)
                      ++++.||+|.|.+.+.    .|......+. .+           .. |....+..  ....+..++++.++|.|||+|.+
T Consensus        54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~  133 (148)
T TIGR03095        54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY  133 (148)
T ss_pred             EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence            3578999999999754    4555543211 11           00 21111000  00012346777899999999999


Q ss_pred             CCCCCCCCeEEEEe
Q 020242           78 PGHCLGGQKLAINV   91 (329)
Q Consensus        78 ~~HC~~GmKl~I~V   91 (329)
                      ++|=+.||+..|.|
T Consensus       134 pgH~~~GM~G~iiV  147 (148)
T TIGR03095       134 PGHAENGMYGKIVV  147 (148)
T ss_pred             hhHHHCCCEEEEEE
Confidence            99999999998877

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR02657 amicyanin amicyanin

Probab=96.60  E-value=0.0092  Score=46.59  Aligned_cols=72  Identities=14%  Similarity=0.032  Sum_probs=47.4

Q ss_pred             cCCCceeeCCEEEEEEcCC-CCcEEEeCcccccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      ....++++||+|.|.-... .|+|.-.+....+ =.....  ....|. .+++++++|.+-|+|..+-    +||..|.|
T Consensus        10 P~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V   82 (83)
T TIGR02657        10 TPELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVV   82 (83)
T ss_pred             CCEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEE
Confidence            3456899999999988743 7999654321111 000111  123333 5789999999999999854    49999887


Q ss_pred             e
Q 020242           92 S   92 (329)
Q Consensus        92 ~   92 (329)
                      .
T Consensus        83 ~   83 (83)
T TIGR02657        83 E   83 (83)
T ss_pred             C
Confidence            3

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=95.85  E-value=0.032  Score=50.83  Aligned_cols=79  Identities=16%  Similarity=0.235  Sum_probs=50.8

Q ss_pred             eeeecCEEEEeeCC---CCceEEEEccc-cccCCCCC---CCcc-------------cCCCCCcE--EEeC-CCCcEEEE
Q 020242          191 NFSVGDILVFDYPA---RVHDVVEVTKA-AYDSCNSS---STIS-------------KSTNPPTR--ITLG-TAGEHYFF  247 (329)
Q Consensus       191 ~f~vGD~LvF~y~~---~~h~V~~V~~~-~y~~C~~~---~~i~-------------~~~~G~~~--v~L~-~~G~~YFi  247 (329)
                      -+-.|-.+.|+|.+   -.|++..|... .+..+...   +.|-             ....|...  +..+ .+|.||++
T Consensus        89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv  168 (196)
T PF06525_consen   89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV  168 (196)
T ss_pred             EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence            45579888888854   36999988332 33334321   1110             01123322  1112 68999999


Q ss_pred             cCCCCCCCCCCeEEEEecCCCC
Q 020242          248 CTFPGHCSAGQKLAVNVTGGSS  269 (329)
Q Consensus       248 c~~~~HC~~GmKl~I~V~~~~~  269 (329)
                      |+..||-+.||-..+.|...-.
T Consensus       169 C~ipGHA~sGMw~~LiVs~~vt  190 (196)
T PF06525_consen  169 CGIPGHAESGMWGVLIVSSNVT  190 (196)
T ss_pred             ccCCChhhcCCEEEEEEecCcc
Confidence            9999999999999999987653

The most closely related proteins characterised as functionally different are the rusticyanins.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=95.84  E-value=0.039  Score=50.32  Aligned_cols=88  Identities=13%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             ChhhccCCC---ceeeCCEEEEEEcCC---CCcEEEe-CcccccCCCCC---CCCc--------c-----cCCCCcE-EE
Q 020242            9 DIDVFLCLF---SFFFFTFSVFNFAAG---NHDVTRV-TQSSFNACNTT---SPLS--------R-----TTNSPAS-VT   64 (329)
Q Consensus         9 ~y~~Wa~~~---tf~vGD~LvF~y~~~---~H~V~~V-~~~~y~~C~~~---~~~~--------~-----~~~G~~~-v~   64 (329)
                      ||+--..++   -+-.|..|.|.|.+.   .|+++.| +...+..|-..   +.+.        .     ...|... ..
T Consensus        77 nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~  156 (196)
T PF06525_consen   77 NFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGV  156 (196)
T ss_pred             eeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEE
Confidence            455444432   456799999999743   6998888 33333444221   1110        0     1123322 12


Q ss_pred             e--cccCceEEEcCCCCCCCCCCeEEEEeecCCC
Q 020242           65 L--TASGPHYFICSFPGHCLGGQKLAINVSARGS   96 (329)
Q Consensus        65 L--~~~G~~yFiCs~~~HC~~GmKl~I~V~~~~~   96 (329)
                      +  ..+|.||+.|++++|-+.||-..+.|...-.
T Consensus       157 ~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt  190 (196)
T PF06525_consen  157 YNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNVT  190 (196)
T ss_pred             EccCCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence            2  2589999999999999999999999976543

The most closely related proteins characterised as functionally different are the rusticyanins.

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=94.66  E-value=0.63  Score=43.62  Aligned_cols=78  Identities=23%  Similarity=0.367  Sum_probs=45.6

Q ss_pred             eeeecCEEEE---eeCCCC------ceEEEEccccccCCCCC-CCcc------------------cCCCCCcEEEeCCCC
Q 020242          191 NFSVGDILVF---DYPARV------HDVVEVTKAAYDSCNSS-STIS------------------KSTNPPTRITLGTAG  242 (329)
Q Consensus       191 ~f~vGD~LvF---~y~~~~------h~V~~V~~~~y~~C~~~-~~i~------------------~~~~G~~~v~L~~~G  242 (329)
                      ..++||.|-+   .|+.+.      .-+++|+++.|+.|+.. .+-.                  .++--..-+.. ++|
T Consensus        46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG  124 (233)
T KOG3858|consen   46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG  124 (233)
T ss_pred             EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence            3456888876   454321      24567999999999962 2211                  11110111122 456


Q ss_pred             -cEEEEcCC-----------CCCCC-CCCeEEEEecCCCC
Q 020242          243 -EHYFFCTF-----------PGHCS-AGQKLAVNVTGGSS  269 (329)
Q Consensus       243 -~~YFic~~-----------~~HC~-~GmKl~I~V~~~~~  269 (329)
                       .||||++-           ++-|. ..||+.+.|..+..
T Consensus       125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~  164 (233)
T KOG3858|consen  125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR  164 (233)
T ss_pred             CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence             68888763           45666 46999999987554

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=92.92  E-value=0.16  Score=43.87  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=39.5

Q ss_pred             CCCeeeecCEEEEeeCCC---CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCCCCCC-CCeE
Q 020242          188 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSA-GQKL  260 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~-GmKl  260 (329)
                      +..+++.||.+.+.+.+.   .|.+..   .+|+   ..   .....|.   .+++.+++|.|.|+|+.  ||.. -|-.
T Consensus        61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~~~H~~~  129 (135)
T TIGR03096        61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPKNIHLPG  129 (135)
T ss_pred             CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CChhhcCCC
Confidence            668999999998877532   255442   2221   11   1222233   35667899999999987  6753 2333


Q ss_pred             EEEe
Q 020242          261 AVNV  264 (329)
Q Consensus       261 ~I~V  264 (329)
                      .+||
T Consensus       130 ~~~~  133 (135)
T TIGR03096       130 SLNV  133 (135)
T ss_pred             cccc
Confidence            4444

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=92.53  E-value=0.044  Score=47.82  Aligned_cols=76  Identities=25%  Similarity=0.420  Sum_probs=46.5

Q ss_pred             CeeeecCEEEE---eeCCC--------CceEEEEccccccCCCCCC-Cccc------C-CCCCcEEEe------------
Q 020242          190 NNFSVGDILVF---DYPAR--------VHDVVEVTKAAYDSCNSSS-TISK------S-TNPPTRITL------------  238 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~~--------~h~V~~V~~~~y~~C~~~~-~i~~------~-~~G~~~v~L------------  238 (329)
                      ..+++||.|-|   +|...        ...+++|++++|+.|+... ....      . ..|..+|++            
T Consensus        24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~  103 (145)
T PF00812_consen   24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL  103 (145)
T ss_dssp             EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence            47789999998   45433        4578889999999999643 2111      1 124444433            


Q ss_pred             -CCCC-cEEEEcCC-----------CCCCC-CCCeEEEEec
Q 020242          239 -GTAG-EHYFFCTF-----------PGHCS-AGQKLAVNVT  265 (329)
Q Consensus       239 -~~~G-~~YFic~~-----------~~HC~-~GmKl~I~V~  265 (329)
                       =++| .||||++-           +|-|. ..|||.|.|.
T Consensus       104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~  144 (145)
T PF00812_consen  104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG  144 (145)
T ss_dssp             S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred             eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence             1456 68888764           23477 5799999885

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=92.17  E-value=0.15  Score=46.09  Aligned_cols=31  Identities=26%  Similarity=0.520  Sum_probs=27.3

Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEecCCCC
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGSS  269 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~  269 (329)
                      ..+|.||++|+..||-+.||=..+.|...-.
T Consensus       159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt  189 (195)
T TIGR03094       159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT  189 (195)
T ss_pred             CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence            3799999999999999999999888877543

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=92.09  E-value=0.71  Score=41.83  Aligned_cols=29  Identities=28%  Similarity=0.572  Sum_probs=25.8

Q ss_pred             cccCceEEEcCCCCCCCCCCeEEEEeecC
Q 020242           66 TASGPHYFICSFPGHCLGGQKLAINVSAR   94 (329)
Q Consensus        66 ~~~G~~yFiCs~~~HC~~GmKl~I~V~~~   94 (329)
                      ..+|.||++|+.++|-+.||=..+.|...
T Consensus       159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~  187 (195)
T TIGR03094       159 TSAGKYWLVCGITGHAESGMWAVVIVSSN  187 (195)
T ss_pred             CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence            36899999999999999999988888754

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=91.74  E-value=0.27  Score=43.38  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=50.2

Q ss_pred             CCCeeeecCEEEEeeCCC---CceEEEE----ccccccCC----CCC----CC--cccCCCCCcEEEeCCCCcEEEEcCC
Q 020242          188 RNNNFSVGDILVFDYPAR---VHDVVEV----TKAAYDSC----NSS----ST--ISKSTNPPTRITLGTAGEHYFFCTF  250 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~---~h~V~~V----~~~~y~~C----~~~----~~--i~~~~~G~~~v~L~~~G~~YFic~~  250 (329)
                      ++..++.|.+++|.-++.   .|.+..-    +..-+..=    +..    +.  +....+|..++.++.+|.|=|+|.+
T Consensus        63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i  142 (158)
T COG4454          63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI  142 (158)
T ss_pred             CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence            567888899988866543   3444432    00001000    110    10  1122345567889999999999999


Q ss_pred             CCCCCCCCeEEEEec
Q 020242          251 PGHCSAGQKLAVNVT  265 (329)
Q Consensus       251 ~~HC~~GmKl~I~V~  265 (329)
                      +||-+.||...|+|.
T Consensus       143 PGHy~AGM~g~itV~  157 (158)
T COG4454         143 PGHYEAGMVGEITVS  157 (158)
T ss_pred             CCcccCCcEEEEEeC
Confidence            999999999999986

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=89.35  E-value=0.38  Score=41.54  Aligned_cols=60  Identities=7%  Similarity=-0.020  Sum_probs=36.0

Q ss_pred             ChhhccCCCceeeCCEEEEEEcCC---CCcEEEeCcccccCCCCCCCCcccCCCCc---EEEecccCceEEEcCC
Q 020242            9 DIDVFLCLFSFFFFTFSVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSPA---SVTLTASGPHYFICSF   77 (329)
Q Consensus         9 ~y~~Wa~~~tf~vGD~LvF~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~~G~~yFiCs~   77 (329)
                      +|..=.+.++++.||.|.+.|.+.   .|.+..   .+|.   .   ......|..   +++.+++|.|+|+|..
T Consensus        55 n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~  120 (135)
T TIGR03096        55 NVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL  120 (135)
T ss_pred             eeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence            344445567889999999988632   244321   1221   1   112233432   4666999999999987

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=89.11  E-value=0.53  Score=41.54  Aligned_cols=79  Identities=20%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCc--cccc-----CC--------CCCCCC--cccCCCCcEEEecccCceEEEcC
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQ--SSFN-----AC--------NTTSPL--SRTTNSPASVTLTASGPHYFICS   76 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~--~~y~-----~C--------~~~~~~--~~~~~G~~~v~L~~~G~~yFiCs   76 (329)
                      .+...++.|-+++|.-.+...-+.+++-  .+..     .=        +..+.+  ..-.+|.-++.+...|.|=|+|.
T Consensus        62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~  141 (158)
T COG4454          62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN  141 (158)
T ss_pred             CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence            4567889999999988755333333311  1111     00        000011  11123334688888999999999


Q ss_pred             CCCCCCCCCeEEEEee
Q 020242           77 FPGHCLGGQKLAINVS   92 (329)
Q Consensus        77 ~~~HC~~GmKl~I~V~   92 (329)
                      +++|-+.||...|+|.
T Consensus       142 iPGHy~AGM~g~itV~  157 (158)
T COG4454         142 IPGHYEAGMVGEITVS  157 (158)
T ss_pred             CCCcccCCcEEEEEeC
Confidence            9999999999999985

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=87.74  E-value=0.43  Score=38.46  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             cCCCceeeCCEEEEEEcC---CCCcEEEeCcccccCCCCCCCCcccCCCC-cEEEe--cccCceEEEcCCCCCCCCCCeE
Q 020242           14 LCLFSFFFFTFSVFNFAA---GNHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTL--TASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~---~~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L--~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      .+..+++.|+.+.+.+.+   ..|+++. .+  ++      -......|. .++++  .++|.|=|+|+++.+    ||.
T Consensus        34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--~~------~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G  100 (104)
T PF13473_consen   34 PSTITVKAGQPVTLTFTNNDSRPHEFVI-PD--LG------ISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKG  100 (104)
T ss_dssp             S-EEEEETTCEEEEEEEE-SSS-EEEEE-GG--GT------EEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred             cCEEEEcCCCeEEEEEEECCCCcEEEEE-CC--Cc------eEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence            345689999966666653   2455522 21  11      011233343 35555  899999999997663    666


Q ss_pred             EEEe
Q 020242           88 AINV   91 (329)
Q Consensus        88 ~I~V   91 (329)
                      .|.|
T Consensus       101 ~liV  104 (104)
T PF13473_consen  101 TLIV  104 (104)
T ss_dssp             ----
T ss_pred             cccC
Confidence            5544

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=87.35  E-value=1.4  Score=42.91  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             CCeeeecCEEEEeeCCC-----CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCC----CCCCC
Q 020242          189 NNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFP----GHCSA  256 (329)
Q Consensus       189 ~~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~----~HC~~  256 (329)
                      .++++.||.|.+.+.+.     .|++..=-....+   ....+.....|.   ..|+++.+|++||-|...    .|=..
T Consensus        60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~  136 (311)
T TIGR02376        60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS  136 (311)
T ss_pred             eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence            46899999999888654     4655531100000   001111233333   367788999999999953    47788


Q ss_pred             CCeEEEEecCCC
Q 020242          257 GQKLAVNVTGGS  268 (329)
Q Consensus       257 GmKl~I~V~~~~  268 (329)
                      ||...|.|....
T Consensus       137 Gl~G~liV~~~~  148 (311)
T TIGR02376       137 GMNGAIMVLPRE  148 (311)
T ss_pred             CcceEEEeeccC
Confidence            999999998653

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=86.18  E-value=0.62  Score=37.51  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             CCCeeeecCEEEEeeC---CCCceEEEEccccccCCCCCCCcccCCCCC-cEEEe--CCCCcEEEEcCCCCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYP---ARVHDVVEVTKAAYDSCNSSSTISKSTNPP-TRITL--GTAGEHYFFCTFPGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~---~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~-~~v~L--~~~G~~YFic~~~~HC~~GmKl~  261 (329)
                      +..+++.|+.+.+.+.   ...|++.. .+-        +.......|. .++++  .++|.|=|+|+...+    ||..
T Consensus        35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~--------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~  101 (104)
T PF13473_consen   35 STITVKAGQPVTLTFTNNDSRPHEFVI-PDL--------GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT  101 (104)
T ss_dssp             -EEEEETTCEEEEEEEE-SSS-EEEEE-GGG--------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred             CEEEEcCCCeEEEEEEECCCCcEEEEE-CCC--------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence            5689999994444443   34566652 221        1112233343 34555  899999999997553    6666


Q ss_pred             EEe
Q 020242          262 VNV  264 (329)
Q Consensus       262 I~V  264 (329)
                      |.|
T Consensus       102 liV  104 (104)
T PF13473_consen  102 LIV  104 (104)
T ss_dssp             ---
T ss_pred             ccC
Confidence            654

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=85.43  E-value=0.55  Score=40.96  Aligned_cols=75  Identities=24%  Similarity=0.373  Sum_probs=43.6

Q ss_pred             ceeeCCEEEEEEc---CC--------CCcEEEeCcccccCCCCCC-CCccc-------CCCCcEEEe--c----------
Q 020242           18 SFFFFTFSVFNFA---AG--------NHDVTRVTQSSFNACNTTS-PLSRT-------TNSPASVTL--T----------   66 (329)
Q Consensus        18 tf~vGD~LvF~y~---~~--------~H~V~~V~~~~y~~C~~~~-~~~~~-------~~G~~~v~L--~----------   66 (329)
                      .+++||.|-|-=.   ..        ...+++|++++|+.|+... ....+       ..|..+|++  .          
T Consensus        25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E  104 (145)
T PF00812_consen   25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE  104 (145)
T ss_dssp             EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence            6788999988643   22        3458889999999999632 21111       123333333  1          


Q ss_pred             -ccC-ceEEEcCCC-----------CCCC-CCCeEEEEee
Q 020242           67 -ASG-PHYFICSFP-----------GHCL-GGQKLAINVS   92 (329)
Q Consensus        67 -~~G-~~yFiCs~~-----------~HC~-~GmKl~I~V~   92 (329)
                       ++| .||||++-.           |-|. +.|||.|.|.
T Consensus       105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~  144 (145)
T PF00812_consen  105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG  144 (145)
T ss_dssp             --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred             ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence             155 577887652           2263 5689988874

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>TIGR02695 azurin azurin

Probab=84.80  E-value=4  Score=34.83  Aligned_cols=29  Identities=38%  Similarity=0.688  Sum_probs=21.8

Q ss_pred             cEEEec----ccCc-eEEEcCCCCCCCCCCeEEEE
Q 020242           61 ASVTLT----ASGP-HYFICSFPGHCLGGQKLAIN   90 (329)
Q Consensus        61 ~~v~L~----~~G~-~yFiCs~~~HC~~GmKl~I~   90 (329)
                      ++|+++    ++|. |=|||++++|=. .||..+.
T Consensus        91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~  124 (125)
T TIGR02695        91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK  124 (125)
T ss_pred             EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence            456665    4676 779999999975 6988764

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>PRK02888 nitrous-oxide reductase; Validated

Probab=83.06  E-value=4.3  Score=43.29  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             CCCeeeecCEEEEeeCCC------CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCC---
Q 020242          188 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCS---  255 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~---  255 (329)
                      ...++++||.+.|...+-      .|....   ..|.      .......|   ...|+.+++|.|||+|+.  .|.   
T Consensus       555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H  623 (635)
T PRK02888        555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALH  623 (635)
T ss_pred             ceEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCc
Confidence            457899999999998652      243332   1111      11112223   345778999999999998  344   


Q ss_pred             CCCeEEEEecC
Q 020242          256 AGQKLAVNVTG  266 (329)
Q Consensus       256 ~GmKl~I~V~~  266 (329)
                      .+|+..|.|..
T Consensus       624 ~~M~G~~iVep  634 (635)
T PRK02888        624 MEMRGRMLVEP  634 (635)
T ss_pred             ccceEEEEEEe
Confidence            37999998864

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=82.89  E-value=3.1  Score=40.44  Aligned_cols=75  Identities=17%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CceeeCCEEEEEEcCC-----CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCC----CCCCCC
Q 020242           17 FSFFFFTFSVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFP----GHCLGG   84 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~----~HC~~G   84 (329)
                      .+++.||+|++++.+.     .|++..=-....+   ..........|.   ..|+++.+|++||-|...    .|=..|
T Consensus        61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G  137 (311)
T TIGR02376        61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG  137 (311)
T ss_pred             EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence            4789999999999764     3554321000000   001111233343   357888899999999953    477889


Q ss_pred             CeEEEEeecC
Q 020242           85 QKLAINVSAR   94 (329)
Q Consensus        85 mKl~I~V~~~   94 (329)
                      |...|.|...
T Consensus       138 l~G~liV~~~  147 (311)
T TIGR02376       138 MNGAIMVLPR  147 (311)
T ss_pred             cceEEEeecc
Confidence            9999999753

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>TIGR02695 azurin azurin

Probab=82.57  E-value=5.4  Score=34.04  Aligned_cols=29  Identities=45%  Similarity=0.837  Sum_probs=21.9

Q ss_pred             cEEEeC----CCCc-EEEEcCCCCCCCCCCeEEEE
Q 020242          234 TRITLG----TAGE-HYFFCTFPGHCSAGQKLAVN  263 (329)
Q Consensus       234 ~~v~L~----~~G~-~YFic~~~~HC~~GmKl~I~  263 (329)
                      +.|+++    ++|. |=|||+++||=. .||..+.
T Consensus        91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~  124 (125)
T TIGR02695        91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK  124 (125)
T ss_pred             EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence            445554    4675 779999999996 7988765

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=81.82  E-value=0.58  Score=38.97  Aligned_cols=79  Identities=14%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             CCeeeecCEEEEeeCCC---CceEEE--E--ccc-ccc--CCCCCCCcccCCCCCcEEEeCC-CCcEEEEcCCCCCCCCC
Q 020242          189 NNNFSVGDILVFDYPAR---VHDVVE--V--TKA-AYD--SCNSSSTISKSTNPPTRITLGT-AGEHYFFCTFPGHCSAG  257 (329)
Q Consensus       189 ~~~f~vGD~LvF~y~~~---~h~V~~--V--~~~-~y~--~C~~~~~i~~~~~G~~~v~L~~-~G~~YFic~~~~HC~~G  257 (329)
                      -++++.||.|.+.+.+.   .+++..  +  ... ..|  ......+|....+-...|+++. +|.+||-|...+|=..|
T Consensus        27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G  106 (117)
T PF07732_consen   27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG  106 (117)
T ss_dssp             EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred             EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence            47899999999988643   344443  1  111 011  1111112222122234678888 99999999998854489


Q ss_pred             CeEEEEecCC
Q 020242          258 QKLAVNVTGG  267 (329)
Q Consensus       258 mKl~I~V~~~  267 (329)
                      |-.+|.|...
T Consensus       107 L~G~~iV~~~  116 (117)
T PF07732_consen  107 LYGAIIVEPP  116 (117)
T ss_dssp             EEEEEEEE-T
T ss_pred             CEEEEEEcCC
Confidence            9999988653

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
1x9r_A	116	Umecyanin From Horse Raddish- Crystal Structure Of		4e-14
1jer_A	138	Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138		3e-13
1ws7_A	109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		2e-12
2cbp_A	96	Cucumber Basic Protein, A Blue Copper Protein Lengt		5e-12
1f56_A	91	Spinach Plantacyanin Length = 91		5e-11

>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 167 VGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXX 226
           VGG + W  P +    Y  WA    F VGD L FD+ A +HDV  VTK A+D        
Sbjct: 6   VGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 227 XXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                   +I L T G  Y+ CT   HC  GQKL++NV
Sbjct: 65  SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102

>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDXXXXX 223
           H+VG   GW+VP + +  Y  WA    F VGD L F++PA  H+V E+ TK ++D     
Sbjct: 6   HIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 224 XXXXXXXXXXXRIT-LGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                       I  L   G HYF CT   HCS GQKL++NV
Sbjct: 65  NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 165 HVVGGALGWT--VPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXX 222
           H VG + GWT  VP +    Y  WA +N F VGD L+F+Y  + H+V++V +  +     
Sbjct: 5   HKVGDSTGWTTLVPYD----YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 223 XXXXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
                        I L   G  YF C  PGHC  GQK+ + V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXX 224
           +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  +       
Sbjct: 3   YVVGGSGGWTFNT------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 225 XXXXXXXXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263
                     +I L   G+ YF C FPGHC +G K+AVN
Sbjct: 57  GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94

>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 171 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDXXXXXXXXXXXX 230
           +GW+   N        AR  +F  GD+LVF Y    H+VV V    Y             
Sbjct: 5   IGWSFNVNG-------ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57
Query: 231 XXXXRITLGTAGEHYFFCTFPGHCSAGQKLAVN 263
               RI L T G++YF C+FPGHC  G K+A+N
Sbjct: 58  SGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	1e-40
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	5e-24
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	1e-40
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	1e-24
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	2e-40
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	8e-23
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	1e-38
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	5e-25
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	1e-31
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	5e-20
1eys_C	382	Photosynthetic reaction center; membrane protein c	2e-06
1eys_C	382	Photosynthetic reaction center; membrane protein c	6e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	1e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	9e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-04

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score =  137 bits (346), Expect = 1e-40
 Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 165 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS 224
           + VGG + W  P +    Y  WA    F VGD L FD+ A +HDV  VTK A+D+C   +
Sbjct: 4   YDVGGDMEWKRPSDPKF-YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62

Query: 225 TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPS 278
            IS  T PP +I L T G  Y+ CT   HC  GQKL++NV G       A+P +
Sbjct: 63  PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATPGA 116

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score = 93.8 bits (233), Expect = 5e-24
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 18  SFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF 77
           +F       F+FAAG HDV  VT+ +F+ C   +P+S  T  P  + L  +GP Y+IC+ 
Sbjct: 29  TFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTV 88

Query: 78  PGHCLGGQKLAINV-SARGSSPAPQPSS 104
             HC  GQKL+INV  A G+     P +
Sbjct: 89  GDHCRVGQKLSINVVGAGGAGGGATPGA 116

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score =  137 bits (346), Expect = 1e-40
 Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 222
             H VG + GWT        Y  WA +N F VGD L+F+Y  + H+V++V +  + SCNS
Sbjct: 3   TVHKVGDSTGWTTLVPYD--YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 223 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTA 271
           SS  +  T+    I L   G  YF C  PGHC  GQK+ + V  GSS+A
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 109

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score = 95.4 bits (237), Expect = 1e-24
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 18  SFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSF 77
            F      +FN+    H+V +V Q  F +CN++SP +  T+   S+ L   G  YF+C  
Sbjct: 29  KFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGI 88

Query: 78  PGHCLGGQKLAINVSARGSSPA 99
           PGHC  GQK+ I V   GSS A
Sbjct: 89  PGHCQLGQKVEIKVDP-GSSSA 109

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score =  136 bits (343), Expect = 2e-40
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 222
           A +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  + +CN+
Sbjct: 1   AVYVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54

Query: 223 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
            +     T+   +I L   G+ YF C FPGHC +G K+AVN 
Sbjct: 55  PAGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNA 95

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score = 90.0 bits (223), Expect = 8e-23
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 26 VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
          +FN+    H+V  V Q  F+ CNT +     T+    + L   G  YFIC+FPGHC  G 
Sbjct: 31 LFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGM 89

Query: 86 KLAINV 91
          K+A+N 
Sbjct: 90 KIAVNA 95

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score =  131 bits (330), Expect = 1e-38
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 171 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKST 230
           +GW+          N AR  +F  GD+LVF Y    H+VV V    Y SC++       +
Sbjct: 5   IGWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 231 NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
           +   RI L T G++YF C+FPGHC  G K+A+N 
Sbjct: 58  SGQDRIKL-TRGQNYFICSFPGHCGGGMKIAINA 90

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score = 95.6 bits (238), Expect = 5e-25
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 26 VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
          VF +  G H+V  V    + +C+        ++    + LT  G +YFICSFPGHC GG 
Sbjct: 26 VFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYFICSFPGHCGGGM 84

Query: 86 KLAINV 91
          K+AIN 
Sbjct: 85 KIAINA 90

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score =  114 bits (287), Expect = 1e-31
 Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCN 221
             H+VG   GW+VP + +  Y  WA    F VGD L F++PA  H+V E+ TK ++D+CN
Sbjct: 4   TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 222 SSSTISKSTNPPTRI-TLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPSASPPSPT 280
             ++ +        I  L   G HYF CT   HCS GQKL++NV   ++T     P S  
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSSSP 122

Query: 281 ATPPSTTTNPPPQSP 295
            +        PP SP
Sbjct: 123 PSSVMPPPVMPPPSP 137

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 83.9 bits (207), Expect = 5e-20
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 19  FFFFTFSVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNSPASV-TLTASGPHYFICS 76
           F       FNF A  H+V  + T+ SF+ACN  +  +    +   +  L   G HYF+C+
Sbjct: 32  FRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCT 91

Query: 77  FPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPA 121
              HC  GQKL+INV A  ++ +  P S +P  S   P  +P P+
Sbjct: 92  VGTHCSNGQKLSINVVAANATVSMPPPSSSPPSSVMPPPVMPPPS 136

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 15/66 (22%), Positives = 18/66 (27%)

Query: 99  APQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAP 158
               +  A   S       PA A    P       PA    PA A         +  PAP
Sbjct: 310 KTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAP 369

Query: 159 TRQPAT 164
             + A 
Sbjct: 370 VEEVAP 375

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 14/74 (18%), Positives = 20/74 (27%)

Query: 88  AINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPT 147
            +  +A      P  +  +     +     P       PA    P  A       A +  
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVE 366

Query: 148 PTPRSAPTPAPTRQ 161
           P P     PAP  Q
Sbjct: 367 PAPVEEVAPAPAAQ 380

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 3/80 (3%)

Query: 95  GSSPA--PQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
           GSS       S   P+ S     P  +     +   A    P T P PAP   P P   +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 153 APTPAPTRQPATHVVGGALG 172
            P           ++ G  G
Sbjct: 61  PPDTVTGDSVLQRILRGPTG 80

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 103 SSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQP 162
           SS       S   P  +    P+ +   A          P + P P P   P PA    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN-P 61

Query: 163 ATHVVGGALGWTVPP 177
              V G ++   +  
Sbjct: 62  PDTVTGDSVLQRILR 76

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 15/71 (21%), Positives = 22/71 (30%)

Query: 94  RGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSA 153
             + P P P  P    +G+ P  V   +        P     T+  PA      P P + 
Sbjct: 42  PVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAP 101

Query: 154 PTPAPTRQPAT 164
            +  P    A 
Sbjct: 102 ASAPPAAGRAV 112

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 12/71 (16%), Positives = 15/71 (21%), Gaps = 1/71 (1%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
           S+           P        PS     A +   A    P     P P P  AP     
Sbjct: 3   SSHHHHHHSSGLVP-RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 152 SAPTPAPTRQP 162
                  +   
Sbjct: 62  PDTVTGDSVLQ 72

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 15/73 (20%), Positives = 19/73 (26%), Gaps = 3/73 (4%)

Query: 92  SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPA--PASAPTPT 149
           S+           P+     S  S   A    P   P PAP P   P     P +    +
Sbjct: 11  SSGLVPRGSHMVIPSASV-TSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69

Query: 150 PRSAPTPAPTRQP 162
                   PT   
Sbjct: 70  VLQRILRGPTGPG 82

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 17/81 (20%), Positives = 23/81 (28%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
           S +   ++     +   P  VP PA  P PAPA    P T    +        P    T 
Sbjct: 25  SASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTT 84

Query: 157 APTRQPATHVVGGALGWTVPP 177
           +           G       P
Sbjct: 85  SLAPAVRYGRQPGPEAPASAP 105

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 111 GSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGA 170
           GS+       +            P+ + T A +            P P   P      G 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 171 LGWTVPPNAS 180
              TV  ++ 
Sbjct: 61  PPDTVTGDSV 70

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 9/90 (10%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPV--PAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
           A    PAP   +P    +G +        P    T + APA      P P   ++  P  
Sbjct: 49  APPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108

Query: 151 RSA-------PTPAPTRQPATHVVGGALGW 173
             A       P P P       V      W
Sbjct: 109 GRAVPGLYHHPVPEPDPVRVEEVSRRIKRW 138

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 16/95 (16%), Positives = 21/95 (22%), Gaps = 1/95 (1%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAP-APEPATTPTPAPASAPTPTPRSA 153
              P      PAP P  +  +  P    T           P    T + A A     +  
Sbjct: 38  ALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPG 97

Query: 154 PTPAPTRQPATHVVGGALGWTVPPNASVGYQNWAR 188
           P    +  PA       L     P           
Sbjct: 98  PEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVS 132

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 14/102 (13%), Positives = 22/102 (21%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
                       P P  S  SP   P      A   +         AP+   +       
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 155 TPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGD 196
           + +   +  T          V   +    +  A      V D
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVID 121

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 93  ARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRS 152
            R   P P PS+ +P  +    +   A   +     A    P+   +       + +   
Sbjct: 27  QRPQPPPPPPSAASP-GATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAV 85

Query: 153 APTPAPTRQPATHVVGGALG 172
             T A      +  VGG  G
Sbjct: 86  KQTTAAAAATFSEQVGGGSG 105

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 8/217 (3%)

Query: 97   SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPT-PRSAPT 155
            SP     S      G T           +P  A    P +      +   +PT P  +PT
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPT 1552

Query: 156  PAPTRQPATHVVGGALGWTVP--PNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVT 213
             +P   P +           P  P+ S    +++  +         +   +  +     T
Sbjct: 1553 -SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPT 1608

Query: 214  KAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTAPS 273
              +Y   + S + +  +  PT  +       Y   T P +       +      S T+PS
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPS 1667

Query: 274  ASPPSPTATPPSTTTNPPPQSPGGGTAPPPPNSSAKS 310
             SP SP+ +P S + +P   S    +    P S + S
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS 1704

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 49/229 (21%), Positives = 77/229 (33%), Gaps = 40/229 (17%)

Query: 92   SARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPR 151
                +SP    SSP   P+  T SP  +PA +PT        P+ +PT +P+ +PT    
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPT-SPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSY 1584

Query: 152  SAPTPAPTRQPATHVVGGALGWTVPPN---ASVGYQNWARNNNFSVGDILVFDYPARVHD 208
            S  +P+ +    ++           P+    S  Y                         
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP----------------------- 1621

Query: 209  VVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 268
                T  +Y   + S + +  +  PT  +       Y   T P +       +      S
Sbjct: 1622 ----TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPSYSPTSPSYS 1676

Query: 269  STAPSASPPSPTATPPSTTTNPP-----PQSPGGGTAPP--PPNSSAKS 310
             T+PS SP SP+ +P S   +P      P SPG     P   P    + 
Sbjct: 1677 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQK 1725

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 22/81 (27%)

Query: 106 APQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATH 165
           AP   G+        A    PA    P     PT  P       P++   P P    AT 
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 166 VVGGALGWTVPPNASVGYQNW 186
             G A       +      + 
Sbjct: 64  AAGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 102 PSSPA-PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTR 160
           P+SP  P  + +T +    PA    PA   AP     P           PR A   A   
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 161 QPATHV 166
                +
Sbjct: 65  AGHATL 70

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 10/71 (14%), Positives = 18/71 (25%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 155
            +P    ++ A     +TP+P    A           +    PTP   +    T  +   
Sbjct: 9   GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68

Query: 156 PAPTRQPATHV 166
                      
Sbjct: 69  TLREHLRDIKA 79

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 22/87 (25%)

Query: 120 PARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHVVGGALGWTVPPNA 179
           PA   +P               PA+   P   +APT  P  +                NA
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 180 SVGYQNWARNNNFSVGDILVFDYPARV 206
           +V   +     +         D    V
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYV 88

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 20/81 (24%)

Query: 98  PAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPA 157
            +P     A     +   P          AP   P+P     P   + P P   +A   A
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 158 PTRQPATHVVGGALGWTVPPN 178
                  H+       T    
Sbjct: 66  GHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 90  NVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPA-PAPAPEPATTPTPAPASAPTP 148
            V+A   +    P++PAP   G+ P+  P P +   P  P P        T A   A   
Sbjct: 12  GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLR 71

Query: 149 TPRSAPTPAPTRQP 162
                     T   
Sbjct: 72  EHLRDIKAENTDAN 85

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 11/88 (12%), Positives = 16/88 (18%)

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
               Q    A           P        +      P     P+       TP      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 157 APTRQPATHVVGGALGWTVPPNASVGYQ 184
               Q  T +    L      + +   Q
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 11/90 (12%), Positives = 21/90 (23%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
            ++P  QP+   P    +           P     P+       TPA         ++  
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 155 TPAPTRQPATHVVGGALGWTVPPNASVGYQ 184
           +          +V             +G  
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 15/140 (10%), Positives = 27/140 (19%)

Query: 95  GSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAP 154
                 Q     P           A            P         P            
Sbjct: 52  AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111

Query: 155 TPAPTRQPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTK 214
              P   PA      A+G  + P   +   +        + D+ +   P  +     +  
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

Query: 215 AAYDSCNSSSTISKSTNPPT 234
           +   + +     S     P 
Sbjct: 172 SELSNASPDYIRSTLNAVPK 191

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 1/94 (1%)

Query: 91  VSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTP 150
           V  +      Q ++P  QP+   P   PA A          P     P+       TP  
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP-QGAVPSMGQQQFLTPAQ 66

Query: 151 RSAPTPAPTRQPATHVVGGALGWTVPPNASVGYQ 184
                       + + +       V PNA +  Q
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 107 PQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPATHV 166
           P PS       PA    P P PA +        PAP +A  P   +A   A     A+ +
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAP-AAAAAEIADEPVKASLL 150

Query: 167 V 167
           +
Sbjct: 151 L 151

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 16/63 (25%), Positives = 20/63 (31%)

Query: 105 PAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTPAPTRQPAT 164
           P P    +   P    A  PTPA +     A  P P  A+AP                  
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLL 151

Query: 165 HVV 167
           HV+
Sbjct: 152 HVL 154

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAP 146
           S  A +      +    TP+          PAP  A  PA       A  P
Sbjct: 95  SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPA-AAAAEIADEP 144

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 6/75 (8%), Positives = 12/75 (16%)

Query: 96  SSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPT 155
            S        +      +  P       P        +        PA            
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 156 PAPTRQPATHVVGGA 170
            +        +  G+
Sbjct: 62  GSAGTSVTLQLDDGS 76

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 37  TRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSARGS 96
           T+V  S  +     S  + + +      + + G  +   S     + G            
Sbjct: 18  TQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING----------MG 67

Query: 97  SPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPATTPTPAPASAPTPTPRSAPTP 156
            P    SSP    S S P+       T +P  +    P ++                P  
Sbjct: 68  PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127

Query: 157 APTRQPA 163
                 +
Sbjct: 128 PSGNMAS 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	100.0
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	99.98
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.97
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	99.97
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	99.97
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	99.97
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	99.96
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.15
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	99.06
2cal_A	154	Rusticyanin; iron respiratory electron transport c	98.94
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	98.89
2cal_A	154	Rusticyanin; iron respiratory electron transport c	98.89
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.84
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.81
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	98.75
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.75
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.73
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.73
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.71
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.7
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.7
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.69
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.67
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.64
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.63
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.59
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.58
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.54
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.54
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.49
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.49
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.45
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.44
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.38
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.38
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.35
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.34
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.23
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.22
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.09
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.01
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	97.99
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	97.97
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	97.94
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	97.92
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	97.86
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	97.76
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	97.75
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	97.69
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	97.63
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	97.59
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	97.57
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	97.49
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	97.49
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	97.47
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	97.46
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	97.42
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	97.39
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	97.31
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	97.3
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	97.2
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	97.07
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	97.07
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	96.99
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	96.71
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	96.6
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	96.47
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	96.33
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	96.06
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	95.93
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	95.92
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	95.84
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	95.74
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	95.68
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	95.6
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	95.49
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	95.2
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	94.67
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	94.2
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	94.04
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	93.56
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	93.36
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	93.31
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	92.87
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	92.82
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	92.36
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	91.98
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	91.92
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	91.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	90.71
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.22
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	89.62
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	89.5
3tas_A	313	Small laccase, multi-copper oxidase; two-domain la	89.12
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	88.94
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	88.91
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.19
3t9w_A	299	Small laccase, multi-copper oxidase; two-domain co	85.2
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	82.84
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	80.26

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=3.4e-39  Score=275.72  Aligned_cols=109  Identities=40%  Similarity=0.777  Sum_probs=101.3

Q ss_pred             CceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEE-ccccccCCCCCCCcccCCCCCcEEEe-
Q 020242          161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCNSSSTISKSTNPPTRITL-  238 (329)
Q Consensus       161 ~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V-~~~~y~~C~~~~~i~~~~~G~~~v~L-  238 (329)
                      .+++|+|||+.||+++.+ ..+|++||++++|+|||+|+|+|..++|+|+|| ++++|+.|+..+++..+++|+++|+| 
T Consensus         2 ~a~~~~VGg~~GW~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~   80 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             CceEEEECCcCcCcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence            467899999999999753 468999999999999999999999999999999 99999999999999999999999999 


Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEecCCCCC
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGSST  270 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~  270 (329)
                      +++|++||||++++||++||||+|+|.+..+.
T Consensus        81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~  112 (138)
T 1jer_A           81 DELGMHYFVCTVGTHCSNGQKLSINVVAANAT  112 (138)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred             cCCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence            99999999999999999999999999987654

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=2.9e-37  Score=254.12  Aligned_cols=106  Identities=42%  Similarity=0.822  Sum_probs=98.3

Q ss_pred             ceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCC
Q 020242          162 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTA  241 (329)
Q Consensus       162 ~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~  241 (329)
                      +++|+|||+.||++++  ..+|++||++++|+|||+|+|+|.++.|+|+||++++|+.|+..+++..+++|++.|+|+++
T Consensus         2 a~~~~VG~~~GW~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~   79 (109)
T 1ws8_A            2 ATVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (109)
T ss_dssp             CCEEETTGGGCSCSSS--CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCCCCccCCC--CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCC
Confidence            5689999999999863  35799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCCCCCCCCeEEEEecCCCC
Q 020242          242 GEHYFFCTFPGHCSAGQKLAVNVTGGSS  269 (329)
Q Consensus       242 G~~YFic~~~~HC~~GmKl~I~V~~~~~  269 (329)
                      |++||||++++||++||||+|+|.+..+
T Consensus        80 G~~yFic~~~gHC~~GmKl~I~V~~~~s  107 (109)
T 1ws8_A           80 GTFYFLCGIPGHCQLGQKVEIKVDPGSS  107 (109)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred             cCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence            9999999999999999999999987654

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=100.00  E-value=9.1e-37  Score=253.71  Aligned_cols=106  Identities=42%  Similarity=0.810  Sum_probs=97.2

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCC
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAG  242 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G  242 (329)
                      ++|+|||+.||+++. ...+|+.|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|++.|+|+++|
T Consensus         2 ~~~~VG~~~GW~~~~-~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G   80 (116)
T 1x9u_A            2 EDYDVGGDMEWKRPS-DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG   80 (116)
T ss_dssp             CEEETTGGGCSSCCS-STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred             eEEEECCcCcCcCCC-CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence            479999999999873 3568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCCCCCCCCeEEE-EecCCCC
Q 020242          243 EHYFFCTFPGHCSAGQKLAV-NVTGGSS  269 (329)
Q Consensus       243 ~~YFic~~~~HC~~GmKl~I-~V~~~~~  269 (329)
                      ++||||++++||++||||+| +|.+.++
T Consensus        81 ~~yFic~~~~HC~~Gmkl~In~V~~~~~  108 (116)
T 1x9u_A           81 PQYYICTVGDHCRVGQKLSINVVGAGGA  108 (116)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred             CEEEECCCCCccccCCEEEEEEECCCCC
Confidence            99999999999999999999 7776553

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=2.3e-35  Score=237.61  Aligned_cols=96  Identities=41%  Similarity=0.873  Sum_probs=92.1

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCC
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAG  242 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G  242 (329)
                      ++|+|||+.||++      +|++||++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|++.|+| ++|
T Consensus         1 ~~~~VG~~~GW~~------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g   73 (96)
T 2cbp_A            1 AVYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKG   73 (96)
T ss_dssp             CEEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSE
T ss_pred             CEEEECCcCCCcc------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCC
Confidence            3799999999996      499999999999999999999999999999999999999999999999999999999 899


Q ss_pred             cEEEEcCCCCCCCCCCeEEEEec
Q 020242          243 EHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       243 ~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++||||++++||++||||+|+|+
T Consensus        74 ~~yFic~~~~HC~~Gmkl~I~Vl   96 (96)
T 2cbp_A           74 QSYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEEcCCCCccccCCEEEEEEC
Confidence            99999999999999999999985

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=99.98  E-value=1.6e-33  Score=240.57  Aligned_cols=90  Identities=31%  Similarity=0.496  Sum_probs=85.0

Q ss_pred             CChhhccCCCceeeCCEEEEEEcCCCCcEEEe-CcccccCCCCCCCCcccCCCCcEEEe-cccCceEEEcCCCCCCCCCC
Q 020242            8 SDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ   85 (329)
Q Consensus         8 ~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~L-~~~G~~yFiCs~~~HC~~Gm   85 (329)
                      .||++|+++++|+|||+|+|+|..++|+|+|| ++++|+.|+..+++..+++|+++|+| +++|++||||++++||++||
T Consensus        21 ~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~~~G~~YFicg~~gHC~~Gm  100 (138)
T 1jer_A           21 NFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQ  100 (138)
T ss_dssp             THHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECCSSEEEEEECCSTTTGGGTC
T ss_pred             cchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEeccCCcCEEEEcCCCCccccCC
Confidence            56999999999999999999999999999999 99999999999999999999999999 99999999999999999999


Q ss_pred             eEEEEeecCCCC
Q 020242           86 KLAINVSARGSS   97 (329)
Q Consensus        86 Kl~I~V~~~~~~   97 (329)
                      ||+|+|....+.
T Consensus       101 Kl~I~V~~~~~~  112 (138)
T 1jer_A          101 KLSINVVAANAT  112 (138)
T ss_dssp             EEEEEEECCC--
T ss_pred             EEEEEEcCCCCC
Confidence            999999876553

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.97  E-value=8.6e-32  Score=214.74  Aligned_cols=91  Identities=40%  Similarity=0.793  Sum_probs=85.9

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCC
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAG  242 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G  242 (329)
                      ++|+|    ||+++       +.|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|++.|+|+ +|
T Consensus         1 ~~y~V----gW~~~-------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g   68 (91)
T 1f56_A            1 AVYNI----GWSFN-------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RG   68 (91)
T ss_dssp             CEEEE----ECSSS-------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SE
T ss_pred             CEEEE----eCCCC-------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CC
Confidence            36889    89973       89999999999999999999999999999999999999999999999999999996 89


Q ss_pred             cEEEEcCCCCCCCCCCeEEEEec
Q 020242          243 EHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       243 ~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++||||++++||++||||+|+|.
T Consensus        69 ~~yFic~~~~HC~~Gmkl~I~v~   91 (91)
T 1f56_A           69 QNYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEEECCSTTTTTTTCEEEEEEC
T ss_pred             CeEEEcCCCCccccCCEEEEEEC
Confidence            99999999999999999999984

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=99.97  E-value=6.4e-32  Score=217.46  Aligned_cols=90  Identities=30%  Similarity=0.529  Sum_probs=86.1

Q ss_pred             CccccCCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCC
Q 020242            2 DRAELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHC   81 (329)
Q Consensus         2 ~~~~~~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC   81 (329)
                      |..+|..+|+.|+++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+| ++|++||||++++||
T Consensus         7 ~~~GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~yFic~~~~HC   85 (96)
T 2cbp_A            7 GSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSYFICNFPGHC   85 (96)
T ss_dssp             GGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEEEECCSTTTG
T ss_pred             CcCCCccChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCEEEEcCCCCcc
Confidence            4567889999999999999999999999999999999999999999999999999999999999 899999999999999


Q ss_pred             CCCCeEEEEee
Q 020242           82 LGGQKLAINVS   92 (329)
Q Consensus        82 ~~GmKl~I~V~   92 (329)
                      ++||||+|+|+
T Consensus        86 ~~Gmkl~I~Vl   96 (96)
T 2cbp_A           86 QSGMKIAVNAL   96 (96)
T ss_dssp             GGTCEEEEEEC
T ss_pred             ccCCEEEEEEC
Confidence            99999999985

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=99.97  E-value=6.2e-32  Score=222.30  Aligned_cols=93  Identities=32%  Similarity=0.570  Sum_probs=85.7

Q ss_pred             cccC--CChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCC
Q 020242            4 AELI--SDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHC   81 (329)
Q Consensus         4 ~~~~--~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC   81 (329)
                      |+..  .||+.|+++++|++||+|+|+|..++|+|+||++++|+.|+.++++..+++|+++|+|+++|++||||++++||
T Consensus        13 W~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~gHC   92 (109)
T 1ws8_A           13 WTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHC   92 (109)
T ss_dssp             SCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSEEEEEECCSTTTT
T ss_pred             ccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCcCEEEECCCCCcc
Confidence            4445  68999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeecCCC
Q 020242           82 LGGQKLAINVSARGS   96 (329)
Q Consensus        82 ~~GmKl~I~V~~~~~   96 (329)
                      ++||||+|+|....+
T Consensus        93 ~~GmKl~I~V~~~~s  107 (109)
T 1ws8_A           93 QLGQKVEIKVDPGSS  107 (109)
T ss_dssp             TTTCEEEEEECC---
T ss_pred             cCCCEEEEEEcCCCC
Confidence            999999999986543

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=99.97  E-value=1.5e-31  Score=222.22  Aligned_cols=87  Identities=37%  Similarity=0.614  Sum_probs=82.7

Q ss_pred             CChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeE
Q 020242            8 SDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus         8 ~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      .||+.|+++++|++||+|+|+|.+++|+|+||++++|++|+..+++..+++|+++|+|+++|++||||++++||++||||
T Consensus        19 ~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmkl   98 (116)
T 1x9u_A           19 KFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKL   98 (116)
T ss_dssp             THHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEEEEEECCSTTTTTTTCEE
T ss_pred             cchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCCEEEECCCCCccccCCEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EE-EeecC
Q 020242           88 AI-NVSAR   94 (329)
Q Consensus        88 ~I-~V~~~   94 (329)
                      +| +|...
T Consensus        99 ~In~V~~~  106 (116)
T 1x9u_A           99 SINVVGAG  106 (116)
T ss_dssp             EEEEECC-
T ss_pred             EEEEECCC
Confidence            99 77644

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=99.96  E-value=4e-30  Score=205.07  Aligned_cols=86  Identities=33%  Similarity=0.528  Sum_probs=81.1

Q ss_pred             ccCCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCC
Q 020242            5 ELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGG   84 (329)
Q Consensus         5 ~~~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~G   84 (329)
                      +|..+ +.|+++++|++||+|+|+|.+++|+|+||++++|+.|+.++++..+++|+++|+|+ +|++||||++++||++|
T Consensus         6 gW~~~-~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~yFic~~~~HC~~G   83 (91)
T 1f56_A            6 GWSFN-VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYFICSFPGHCGGG   83 (91)
T ss_dssp             ECSSS-CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEEEECCSTTTTTTT
T ss_pred             eCCCC-CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCeEEEcCCCCccccC
Confidence            45556 99999999999999999999999999999999999999999999999999999996 89999999999999999


Q ss_pred             CeEEEEee
Q 020242           85 QKLAINVS   92 (329)
Q Consensus        85 mKl~I~V~   92 (329)
                      |||+|+|.
T Consensus        84 mkl~I~v~   91 (91)
T 1f56_A           84 MKIAINAK   91 (91)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEC
Confidence            99999984

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.15  E-value=4.7e-11  Score=100.50  Aligned_cols=95  Identities=20%  Similarity=0.322  Sum_probs=65.4

Q ss_pred             CceEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-----CCceEEEEccc-cccCC-------------
Q 020242          161 QPATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-----RVHDVVEVTKA-AYDSC-------------  220 (329)
Q Consensus       161 ~~~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-----~~h~V~~V~~~-~y~~C-------------  220 (329)
                      ...++.|+-. .+|.+.+          ..++++.||+|.|.|.+     ..|+++..... ++..+             
T Consensus        15 ~~~~v~V~~~~~~~~F~P----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 1qhq_A           15 PAQTVEVRAAPDALAFAQ----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALF   84 (140)
T ss_dssp             CSEEEEEEBCSSSSSBSC----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTT
T ss_pred             CCEEEEEEEeCCCceEeC----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccc
Confidence            3457777754 3577543          56899999999998865     57999887432 22110             


Q ss_pred             ----CCCC------CcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          221 ----NSSS------TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       221 ----~~~~------~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                          +..+      .+....++..+|+++++|.|||+|++.+||+.|||+.|+|.
T Consensus        85 ~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A           85 VPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             CCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             cCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence                0001      11122233456888899999999999999999999999995

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=99.06  E-value=2.2e-10  Score=88.61  Aligned_cols=86  Identities=16%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             eEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEccccccCCCCCCCcccCCCC-CcEEEeC
Q 020242          163 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLG  239 (329)
Q Consensus       163 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L~  239 (329)
                      .++.||++ .+|.+.+          ..+++++||+|+|.+.. ..|+|.......+.     .....+..| ...++++
T Consensus         3 ~~v~~~~~~~~~~f~P----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~   67 (91)
T 1bxv_A            3 VAIKMGADNGMLAFEP----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFS   67 (91)
T ss_dssp             EEEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECC
T ss_pred             EEEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeC
Confidence            35667764 4465433          56899999999999874 68999976533221     001123334 4678899


Q ss_pred             CCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          240 TAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       240 ~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++|.|+|+|.  .||..||+..|.|.
T Consensus        68 ~~G~y~~~C~--~H~~~gM~g~i~V~   91 (91)
T 1bxv_A           68 EPGTYTYYCE--PHRGAGMVGKIVVQ   91 (91)
T ss_dssp             SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             CCEEEEEEeC--CCccCCCEEEEEEC
Confidence            9999999999  89999999999984

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=98.94  E-value=5.5e-10  Score=96.32  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CCCeeeecCEEEEeeCCC----CceEEEEcc-ccccCCCCCCCcc-------cCCCC---Cc--EEEeCCCCcEEEEcCC
Q 020242          188 RNNNFSVGDILVFDYPAR----VHDVVEVTK-AAYDSCNSSSTIS-------KSTNP---PT--RITLGTAGEHYFFCTF  250 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~----~h~V~~V~~-~~y~~C~~~~~i~-------~~~~G---~~--~v~L~~~G~~YFic~~  250 (329)
                      ..+++++||+|+|++.+.    .|++.+++. ..|+.|.....+.       ....|   ..  +|++ ++|.|||+|..
T Consensus        61 p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~  139 (154)
T 2cal_A           61 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQI  139 (154)
T ss_dssp             CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCS
T ss_pred             CEEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCC
Confidence            358999999999999643    599999854 4787787654332       11223   23  5678 99999999999


Q ss_pred             CCCCCCCCeEEEEec
Q 020242          251 PGHCSAGQKLAVNVT  265 (329)
Q Consensus       251 ~~HC~~GmKl~I~V~  265 (329)
                      ++||+.|||..|.|.
T Consensus       140 ~gH~~~GM~G~IiV~  154 (154)
T 2cal_A          140 PGMAATGMFGKIVVK  154 (154)
T ss_dssp             TTTGGGTCEEEEEEC
T ss_pred             CCHHHCCCEEEEEEC
Confidence            999999999999984

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=98.89  E-value=6.9e-10  Score=93.28  Aligned_cols=79  Identities=23%  Similarity=0.350  Sum_probs=55.1

Q ss_pred             cCCCceeeCCEEEEEEcC-----CCCcEEEeCcc-cccC--------------CCC---CCC---CcccCCC---CcEEE
Q 020242           14 LCLFSFFFFTFSVFNFAA-----GNHDVTRVTQS-SFNA--------------CNT---TSP---LSRTTNS---PASVT   64 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-----~~H~V~~V~~~-~y~~--------------C~~---~~~---~~~~~~G---~~~v~   64 (329)
                      ...++++.||+|+|.|.+     ..|+++..... ++..              ...   .+.   ......|   ..+|+
T Consensus        32 P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~~  111 (140)
T 1qhq_A           32 QTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFR  111 (140)
T ss_dssp             CSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEE
T ss_pred             CCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEEEE
Confidence            455799999999999976     47998876422 2211              100   000   0112233   34577


Q ss_pred             ecccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           65 LTASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        65 L~~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      ++++|.|||+|++++||..|||+.|+|.
T Consensus       112 ~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A          112 TPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             CCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             eCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence            8899999999999999999999999996

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=98.89  E-value=1.1e-09  Score=94.30  Aligned_cols=76  Identities=14%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             CCceeeCCEEEEEEcCC----CCcEEEeC-cccccCCCCCCCCc-------ccCCCC---c--EEEecccCceEEEcCCC
Q 020242           16 LFSFFFFTFSVFNFAAG----NHDVTRVT-QSSFNACNTTSPLS-------RTTNSP---A--SVTLTASGPHYFICSFP   78 (329)
Q Consensus        16 ~~tf~vGD~LvF~y~~~----~H~V~~V~-~~~y~~C~~~~~~~-------~~~~G~---~--~v~L~~~G~~yFiCs~~   78 (329)
                      .+++++||+|+|+|.+.    .|+++.++ ...|+.|.....+.       ....|.   .  +|++ ++|.|||+|+++
T Consensus        62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~  140 (154)
T 2cal_A           62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP  140 (154)
T ss_dssp             EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred             EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence            36889999999999753    59999884 45787786554321       112332   3  4677 999999999999


Q ss_pred             CCCCCCCeEEEEee
Q 020242           79 GHCLGGQKLAINVS   92 (329)
Q Consensus        79 ~HC~~GmKl~I~V~   92 (329)
                      +||+.||+..|.|.
T Consensus       141 gH~~~GM~G~IiV~  154 (154)
T 2cal_A          141 GMAATGMFGKIVVK  154 (154)
T ss_dssp             TTGGGTCEEEEEEC
T ss_pred             CHHHCCCEEEEEEC
Confidence            99999999999883

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.84  E-value=1.1e-08  Score=84.96  Aligned_cols=73  Identities=19%  Similarity=0.187  Sum_probs=54.1

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCc-ccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTI-SKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i-~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..+++++||+|+|.+....|+|+...     .|...+.. .....| ...++++++|.|+|+|.  .||+.||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1pmy_A           21 ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVG   93 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEc
Confidence            56899999999999987789998642     12211110 011123 35789999999999998  49999999999998


Q ss_pred             CC
Q 020242          266 GG  267 (329)
Q Consensus       266 ~~  267 (329)
                      ..
T Consensus        94 ~~   95 (123)
T 1pmy_A           94 DK   95 (123)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.81  E-value=1.3e-08  Score=84.65  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCC--CcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS--TISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~--~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..+++++||+|.|.+....|+|+...     .|...+  ....-......++++++|.|+|+|.  .||++||+..|+|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~   93 (123)
T 1paz_A           21 AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVG   93 (123)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEc
Confidence            56899999999999987789998531     222111  1111112235789999999999998  59999999999997


Q ss_pred             C
Q 020242          266 G  266 (329)
Q Consensus       266 ~  266 (329)
                      .
T Consensus        94 ~   94 (123)
T 1paz_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=98.75  E-value=5.3e-09  Score=80.75  Aligned_cols=72  Identities=14%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      ...+++++||+|+|.+.. ..|+|+......+.     ........| ..+++++++|.++|+|.  .||..||+..|.|
T Consensus        18 P~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y~~~C~--~H~~~gM~g~i~V   90 (91)
T 1bxv_A           18 PSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTYTYYCE--PHRGAGMVGKIVV   90 (91)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEEEEECT--TTGGGTCEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEEEEEeC--CCccCCCEEEEEE
Confidence            445799999999999874 57999865433221     001123334 46788999999999999  8999999999988


Q ss_pred             e
Q 020242           92 S   92 (329)
Q Consensus        92 ~   92 (329)
                      .
T Consensus        91 ~   91 (91)
T 1bxv_A           91 Q   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.75  E-value=1e-08  Score=81.00  Aligned_cols=91  Identities=22%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             eEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEccc---cccCCCCCCCcccCCCCC-cEE
Q 020242          163 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKA---AYDSCNSSSTISKSTNPP-TRI  236 (329)
Q Consensus       163 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~---~y~~C~~~~~i~~~~~G~-~~v  236 (329)
                      .++.+|++ .++.+.+          ..+++++||+|.|.+.. ..|+|...+..   .++.+........+..|. ..+
T Consensus         2 ~~V~m~~~~~~~~F~P----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~   71 (98)
T 1iuz_A            2 QIVKLGGDDGSLAFVP----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR   71 (98)
T ss_dssp             EEEEESCTTSCCSEES----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCCcEEeC----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence            35566553 4455433          56899999999998875 48999865421   222221111001233443 478


Q ss_pred             EeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          237 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       237 ~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +++++|.|+|+|..  ||+.||+..|.|.
T Consensus        72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~   98 (98)
T 1iuz_A           72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence            89999999999996  9999999999984

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.73  E-value=4.1e-08  Score=82.33  Aligned_cols=94  Identities=20%  Similarity=0.309  Sum_probs=64.1

Q ss_pred             CceEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCCC----CceEEEEccc------------------cc
Q 020242          161 QPATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR----VHDVVEVTKA------------------AY  217 (329)
Q Consensus       161 ~~~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~----~h~V~~V~~~------------------~y  217 (329)
                      ...++.||.. .++.+.+          ..+++++||+|.|.|.+.    .|+++.+...                  +|
T Consensus        17 ~~~~V~v~~~~~~~~F~p----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~   86 (139)
T 2aan_A           17 GPVTIEIGSKGEELAFDK----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANY   86 (139)
T ss_dssp             CCEEEEEEBCTTSSSBSC----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTT
T ss_pred             cCEEEEEEecCCccEEcC----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccc
Confidence            4456777532 3455432          568899999999887543    6999987532                  46


Q ss_pred             cCCCCCCCc---ccCCCCC-c--EEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          218 DSCNSSSTI---SKSTNPP-T--RITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       218 ~~C~~~~~i---~~~~~G~-~--~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..|...+.+   ..+..|. .  +|+++++|.|+|+|.+.+||+ ||+..|.|.
T Consensus        87 ~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~  139 (139)
T 2aan_A           87 LPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN  139 (139)
T ss_dssp             CCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred             cCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence            666533221   1233443 2  445558999999999999999 999999984

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.73  E-value=3.3e-08  Score=78.58  Aligned_cols=91  Identities=23%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             eEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEcccccc-----CCCCCCCcccCCCC-Cc
Q 020242          163 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYD-----SCNSSSTISKSTNP-PT  234 (329)
Q Consensus       163 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~y~-----~C~~~~~i~~~~~G-~~  234 (329)
                      .++.||.+ .++.+.+          ..+++++||+|.|.+.. ..|+|...+....+     .............| ..
T Consensus         4 ~~V~~~~~~~~~~F~P----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~   73 (106)
T 2gim_A            4 YTVKLGSDKGLLVFEP----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQST   73 (106)
T ss_dssp             EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEE
T ss_pred             EEEEEEecCCcceEcC----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEE
Confidence            35667653 4565433          56899999999999765 57999864322100     00000001112333 35


Q ss_pred             EEEe---CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          235 RITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       235 ~v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      .+++   +++|.|+|+|.  .||++||+..|+|.
T Consensus        74 ~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  105 (106)
T 2gim_A           74 STTFPADAPAGEYTFYCE--PHRGAGMVGKITVA  105 (106)
T ss_dssp             EEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence            7788   89999999999  89999999999996

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.71  E-value=3.1e-08  Score=77.99  Aligned_cols=75  Identities=24%  Similarity=0.370  Sum_probs=53.1

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEccc---cccCCCC---CCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCe
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKA---AYDSCNS---SSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQK  259 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~---~y~~C~~---~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmK  259 (329)
                      ..+++++||+|+|.+... .|+|...+..   ..+.+..   ...+ .+..| ...++++++|.|+|+|.  +||+.||+
T Consensus        17 ~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~-~~~~G~~~~~tf~~~G~y~~~C~--~H~~~gM~   93 (99)
T 1plc_A           17 SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL-LNAKGETFEVALSNKGEYSFYCS--PHQGAGMV   93 (99)
T ss_dssp             SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC-BCSTTCEEEEECCSCEEEEEECG--GGTTTTCE
T ss_pred             CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc-ccCCCCEEEEEECCCceEEEEcC--CCcccCCE
Confidence            568999999999988764 7999865431   1121110   0111 12333 35788999999999999  89999999


Q ss_pred             EEEEec
Q 020242          260 LAVNVT  265 (329)
Q Consensus       260 l~I~V~  265 (329)
                      ..|+|.
T Consensus        94 G~i~V~   99 (99)
T 1plc_A           94 GKVTVN   99 (99)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999984

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.70  E-value=2.6e-08  Score=82.91  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCC--cccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST--ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~--i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +..++++||+|.|.+.+..|+|...+.     |...+.  ...-......++++++|.|+|+|.  .||..||+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   93 (123)
T 3erx_A           21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVG   93 (123)
T ss_dssp             SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            678999999999999887899986432     222111  111112346889999999999999  79999999999998


Q ss_pred             C
Q 020242          266 G  266 (329)
Q Consensus       266 ~  266 (329)
                      .
T Consensus        94 ~   94 (123)
T 3erx_A           94 D   94 (123)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.70  E-value=6.1e-08  Score=75.88  Aligned_cols=90  Identities=23%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             eEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEcccc---ccCCCCCCCcccCCCCCcEEE
Q 020242          163 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAA---YDSCNSSSTISKSTNPPTRIT  237 (329)
Q Consensus       163 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~---y~~C~~~~~i~~~~~G~~~v~  237 (329)
                      .++.+|++ .++.+.+          ..+++++||+|+|.+.. ..|+|...+...   .+.+.... ..........++
T Consensus         3 ~~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~t   71 (97)
T 1b3i_A            3 VQIKMGTDKYAPLYEP----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK-LAIAPGSFYSVT   71 (97)
T ss_dssp             EEEEEEETTTEEEEES----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC-CCCSCSCCEEEE
T ss_pred             EEEEEeccCCccEEeC----------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc-eecCCCCEEEEE
Confidence            35667653 4565433          56899999999999865 479998654321   00111111 111122346788


Q ss_pred             eCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          238 LGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       238 L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++++|.|+|+|.  +||+.||+..|.|.
T Consensus        72 f~~~G~y~y~C~--~H~~~gM~G~i~V~   97 (97)
T 1b3i_A           72 LGTPGTYSFYCT--PHRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred             eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence            999999999999  89999999999984

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.69  E-value=5.1e-08  Score=81.57  Aligned_cols=74  Identities=18%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCC--cccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST--ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~--i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ...++++||+|.|.+.+..|+|...+.     +.....  ...-......++++++|.|+|+|.  .||..||+..|.|.
T Consensus        23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~   95 (127)
T 3tu6_A           23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG   95 (127)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence            578999999999999877899986432     111111  111112346899999999999999  69999999999998


Q ss_pred             CCC
Q 020242          266 GGS  268 (329)
Q Consensus       266 ~~~  268 (329)
                      ...
T Consensus        96 ~~~   98 (127)
T 3tu6_A           96 EPA   98 (127)
T ss_dssp             SCT
T ss_pred             cCC
Confidence            643

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.67  E-value=5.5e-08  Score=81.15  Aligned_cols=72  Identities=17%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcc-cCCC-CCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTIS-KSTN-PPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~-~~~~-G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +..++++||+|.|.+....|+|...+.     +...+... .... ....++++++|.|.|+|.  .||..||+..|+|.
T Consensus        22 ~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~   94 (124)
T 3ef4_A           22 GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVG   94 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEEC
Confidence            578999999999999888999986432     22221111 1122 346889999999999997  69999999999998


Q ss_pred             C
Q 020242          266 G  266 (329)
Q Consensus       266 ~  266 (329)
                      .
T Consensus        95 ~   95 (124)
T 3ef4_A           95 K   95 (124)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.64  E-value=6.2e-08  Score=76.13  Aligned_cols=76  Identities=22%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEccc---cccCCCCC--CCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeE
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKA---AYDSCNSS--STISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKL  260 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~---~y~~C~~~--~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl  260 (329)
                      ..+++++||+|+|.+... .|+|...+..   .++.+...  .....+..| ...++++++|.|+|+|.  .||++||+.
T Consensus        17 ~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~G~y~~~C~--~H~~~gM~G   94 (99)
T 1byp_A           17 SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCA--PHAGAGMVG   94 (99)
T ss_dssp             SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECG--GGTTTTCEE
T ss_pred             CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCCcEEEEEcC--CccccCCEE
Confidence            567899999999988764 7998865421   22222110  000122334 35788999999999999  899999999


Q ss_pred             EEEec
Q 020242          261 AVNVT  265 (329)
Q Consensus       261 ~I~V~  265 (329)
                      .|.|.
T Consensus        95 ~i~V~   99 (99)
T 1byp_A           95 KVTVN   99 (99)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99984

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.63  E-value=5.1e-08  Score=77.02  Aligned_cols=90  Identities=22%  Similarity=0.254  Sum_probs=60.2

Q ss_pred             EEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEcccccc----CCCCCCCc----ccCCCC-
Q 020242          164 THVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYD----SCNSSSTI----SKSTNP-  232 (329)
Q Consensus       164 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~y~----~C~~~~~i----~~~~~G-  232 (329)
                      ++.||++ .++.+        ..  ..+++++||+|.|.+.. ..|+|...+...++    .|.....+    ..+..| 
T Consensus         2 ~V~~g~~~~~~~F--------~P--~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~   71 (102)
T 1kdj_A            2 KVEVGDEVGNFKF--------YP--DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP   71 (102)
T ss_dssp             EEEESCTTCCCCE--------ES--SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred             EEEEecCCCccEE--------eC--CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence            4567763 33443        32  56899999999998765 47999875433321    11111111    112333 


Q ss_pred             CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          233 PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       233 ~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ...++++++|.|+|+|.  .||++||+..|.|.
T Consensus        72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~  102 (102)
T 1kdj_A           72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK  102 (102)
T ss_dssp             EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence            35778899999999999  89999999999984

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.59  E-value=1e-07  Score=79.23  Aligned_cols=74  Identities=19%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCC-cccCCC-CcEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPL-SRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~-~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      ...+++.+||+|+|.+....|+|+...     .|...... .....| ..+++++++|.|+|+|+  .||..||+..|+|
T Consensus        20 P~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V   92 (123)
T 1pmy_A           20 PALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVV   92 (123)
T ss_dssp             SSEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEE
Confidence            455789999999999987789997542     23222111 011123 35789999999999998  5999999999999


Q ss_pred             ecC
Q 020242           92 SAR   94 (329)
Q Consensus        92 ~~~   94 (329)
                      ...
T Consensus        93 ~~~   95 (123)
T 1pmy_A           93 GDK   95 (123)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            753

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.58  E-value=4.2e-08  Score=76.88  Aligned_cols=91  Identities=22%  Similarity=0.231  Sum_probs=60.0

Q ss_pred             eEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCCC-CceEEEEccc---cccCCCCCCCcccCCCCC-cEE
Q 020242          163 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKA---AYDSCNSSSTISKSTNPP-TRI  236 (329)
Q Consensus       163 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~h~V~~V~~~---~y~~C~~~~~i~~~~~G~-~~v  236 (329)
                      .++.+|++ .++.+.+          ...++++||+|.|.+... .|+|......   +++.+........+..|. ..+
T Consensus         2 ~~V~m~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~   71 (98)
T 2plt_A            2 ATVKLGADSGALEFVP----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSV   71 (98)
T ss_dssp             EEEEESCTTCCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred             EEEEEecCCCCceEeC----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEE
Confidence            45667643 3455432          458899999999988754 7999865321   122111000001233343 478


Q ss_pred             EeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          237 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       237 ~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +++++|.|+|+|.  .||+.||+..|.|.
T Consensus        72 tf~~~G~y~y~C~--~H~~~gM~G~i~V~   98 (98)
T 2plt_A           72 KLTAAGEYGYYCE--PHQGAGMVGKIIVQ   98 (98)
T ss_dssp             ECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred             EeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            8899999999999  79999999999984

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.54  E-value=1.1e-07  Score=78.99  Aligned_cols=74  Identities=15%  Similarity=0.053  Sum_probs=54.7

Q ss_pred             ccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCC--CcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEEE
Q 020242           13 FLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN   90 (329)
Q Consensus        13 Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~   90 (329)
                      =.+..++++||+|.|.+....|+|+...     .|.....  ...-.....+++++++|.|+|+|.  .||..||+..|.
T Consensus        19 ~P~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~   91 (123)
T 3erx_A           19 EPAFVRAEPGDVINFVPTDKSHNVEAIK-----EILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQ   91 (123)
T ss_dssp             ESSEEEECTTEEEEEEESSTTCCCEECT-----TSSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEE
T ss_pred             eCCEEEECCCCEEEEEECCCCceEEEcC-----CcCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEE
Confidence            3456799999999999987789996532     1222211  111112336799999999999999  799999999999


Q ss_pred             eec
Q 020242           91 VSA   93 (329)
Q Consensus        91 V~~   93 (329)
                      |..
T Consensus        92 V~~   94 (123)
T 3erx_A           92 VGD   94 (123)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            975

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.54  E-value=1.3e-07  Score=78.57  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=55.1

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCC--CcccCCC-CcEEEecccCceEEEcCCCCCCCCCCe
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQK   86 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmK   86 (329)
                      +..-...+++++||+|+|.+....|+|+..     +.|.....  ... ..| ..+++++++|.|+|+|+  .||..||+
T Consensus        16 ~~F~P~~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~~~~~-~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~   87 (123)
T 1paz_A           16 MVFEPAYIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAEKFKS-KINENYVLTVTQPGAYLVKCT--PHYAMGMI   87 (123)
T ss_dssp             EEEESSEEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCCCCBC-CTTCCEEEECCSCEEEEEECT--TTGGGTCE
T ss_pred             ceEeCCEEEECCCCEEEEEECCCCeEEEEe-----cccCCCCccceec-CCCCEEEEEeCCCEEEEEEeC--CcccCCCE
Confidence            333355679999999999998778999653     12322211  111 123 35789999999999998  59999999


Q ss_pred             EEEEeec
Q 020242           87 LAINVSA   93 (329)
Q Consensus        87 l~I~V~~   93 (329)
                      ..|+|..
T Consensus        88 G~I~V~~   94 (123)
T 1paz_A           88 ALIAVGD   94 (123)
T ss_dssp             EEEEESS
T ss_pred             EEEEEcC
Confidence            9999975

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.49  E-value=2.9e-07  Score=72.12  Aligned_cols=91  Identities=18%  Similarity=0.161  Sum_probs=58.8

Q ss_pred             eEEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEcccc--ccCCCCCCCcccCCCC-CcEEE
Q 020242          163 ATHVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAA--YDSCNSSSTISKSTNP-PTRIT  237 (329)
Q Consensus       163 ~~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~--y~~C~~~~~i~~~~~G-~~~v~  237 (329)
                      .++.+|.+ .++.+.+          ...++++||+|+|.+.. ..|+|...+...  .+.............| ...++
T Consensus         3 ~~V~~~~~~~~~~F~P----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t   72 (98)
T 1pcs_A            3 ATVKMGSDSGALVFEP----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST   72 (98)
T ss_dssp             EEEEESCTTSCSSEES----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred             EEEEEecCCCccEEeC----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence            35666643 4455432          56899999999999765 479998653210  0000000000112333 35678


Q ss_pred             eCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          238 LGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       238 L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++++|.|+|+|.  .||..||+..|.|.
T Consensus        73 f~~~G~y~~~C~--~H~~~gM~G~i~V~   98 (98)
T 1pcs_A           73 FTEPGTYTYYCE--PHRGAGMVGKVVVE   98 (98)
T ss_dssp             CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence            899999999999  79999999999984

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.49  E-value=1.7e-07  Score=78.43  Aligned_cols=78  Identities=17%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCC--CcccCCCCcEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      +..=....++++||+|.|.+....|+|+..+.     +.....  ...-.....+++++++|.|+|+|.  .||..||+.
T Consensus        18 ~~F~P~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G   90 (127)
T 3tu6_A           18 MAFEPAVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIG   90 (127)
T ss_dssp             EEEESSEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEE
T ss_pred             cEEeCCEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEE
Confidence            44445667999999999999877899965422     222111  111112236899999999999999  699999999


Q ss_pred             EEEeecC
Q 020242           88 AINVSAR   94 (329)
Q Consensus        88 ~I~V~~~   94 (329)
                      .|.|...
T Consensus        91 ~I~V~~~   97 (127)
T 3tu6_A           91 AIVVGEP   97 (127)
T ss_dssp             EEEESSC
T ss_pred             EEEECcC
Confidence            9999864

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.45  E-value=4.4e-07  Score=76.02  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=54.9

Q ss_pred             cCCCceeeCCEEEEEEcCC----CCcEEEeCcc------------------cccCCCCCCCC---cccCCCC-cEEEe--
Q 020242           14 LCLFSFFFFTFSVFNFAAG----NHDVTRVTQS------------------SFNACNTTSPL---SRTTNSP-ASVTL--   65 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~----~H~V~~V~~~------------------~y~~C~~~~~~---~~~~~G~-~~v~L--   65 (329)
                      ...+++++||+|.|.|.+.    .|+++.+...                  +|..|...+.+   .....|. .+|++  
T Consensus        34 p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~f~~  113 (139)
T 2aan_A           34 KTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFTA  113 (139)
T ss_dssp             CSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEEC
T ss_pred             CCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEEEEC
Confidence            3446899999999999754    6999877532                  45555432211   1233443 34444  


Q ss_pred             cccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           66 TASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        66 ~~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      +++|.|+|+|.+++||. ||+..|.|.
T Consensus       114 ~~pG~y~f~C~~~~H~~-GM~G~i~V~  139 (139)
T 2aan_A          114 PAAGTYLYICTVPGHYP-LMQGKLVVN  139 (139)
T ss_dssp             CSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred             CCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence            48999999999999999 999999883

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.44  E-value=2.2e-07  Score=77.44  Aligned_cols=73  Identities=12%  Similarity=0.027  Sum_probs=54.4

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCC-cccCCC-CcEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPL-SRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~-~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      ....++++||+|.|.+....|+|+..+     .+...... .....| ..+++++++|.|+|+|.  .||..||+..|.|
T Consensus        21 P~~i~V~~GDTV~f~n~~~~Hnv~~~~-----~~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V   93 (124)
T 3ef4_A           21 PGFVKVEAGDTVKFVPTDKSHNAESVR-----EVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQV   93 (124)
T ss_dssp             SSEEEECTTCEEEEECSSSSCCCEECT-----TTSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCccEEEeC-----CcCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEE
Confidence            456789999999999987899996532     23222211 111223 35799999999999997  7999999999999


Q ss_pred             ec
Q 020242           92 SA   93 (329)
Q Consensus        92 ~~   93 (329)
                      ..
T Consensus        94 ~~   95 (124)
T 3ef4_A           94 GK   95 (124)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.38  E-value=4.1e-07  Score=71.45  Aligned_cols=80  Identities=23%  Similarity=0.196  Sum_probs=53.7

Q ss_pred             hhccCCCceeeCCEEEEEEcCC-CCcEEEeCcc---cccCCCCC--CCCcccCCCC-cEEEecccCceEEEcCCCCCCCC
Q 020242           11 DVFLCLFSFFFFTFSVFNFAAG-NHDVTRVTQS---SFNACNTT--SPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLG   83 (329)
Q Consensus        11 ~~Wa~~~tf~vGD~LvF~y~~~-~H~V~~V~~~---~y~~C~~~--~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~   83 (329)
                      ..=....++++||+|+|....+ .|+|+..+..   +.+.+...  ........|. .+++++++|.|+|+|.  .||+.
T Consensus        13 ~F~P~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~~~G~y~~~C~--~H~~~   90 (99)
T 1plc_A           13 AFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCS--PHQGA   90 (99)
T ss_dssp             CEESSEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSCEEEEEECG--GGTTT
T ss_pred             eEeCCEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEECCCceEEEEcC--CCccc
Confidence            3334557999999999988754 7999765321   11111100  0001123343 5789999999999999  89999


Q ss_pred             CCeEEEEee
Q 020242           84 GQKLAINVS   92 (329)
Q Consensus        84 GmKl~I~V~   92 (329)
                      ||+..|.|.
T Consensus        91 gM~G~i~V~   99 (99)
T 1plc_A           91 GMVGKVTVN   99 (99)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            999999983

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.38  E-value=1.4e-07  Score=74.37  Aligned_cols=77  Identities=17%  Similarity=0.067  Sum_probs=52.4

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCcc---cccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEE
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQS---SFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLA   88 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~---~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~   88 (329)
                      ....++++||+|.|.+.. ..|+|+..+..   +++.+...........|. .+++++++|.|+|+|+.  ||+.||+..
T Consensus        17 P~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~--H~~~gM~G~   94 (98)
T 1iuz_A           17 PSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEP--HAGAGMKMT   94 (98)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECTT--TGGGTCEEE
T ss_pred             CCEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCCEEEEEEchh--hccCCCEEE
Confidence            455789999999999875 38999654311   122111000001233444 47889999999999996  999999999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus        95 I~V~   98 (98)
T 1iuz_A           95 ITVQ   98 (98)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.35  E-value=5.8e-07  Score=71.24  Aligned_cols=72  Identities=18%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCcccccCCCCC----------CCCcccCCC-CcEEEe---cccCceEEEcCCC
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSSFNACNTT----------SPLSRTTNS-PASVTL---TASGPHYFICSFP   78 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~~----------~~~~~~~~G-~~~v~L---~~~G~~yFiCs~~   78 (329)
                      ...+++++||+|+|.+.. ..|+|+....     |...          ........| ..+|++   +++|.|+|+|.  
T Consensus        19 P~~i~v~~Gd~V~~~n~~~~~H~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~--   91 (106)
T 2gim_A           19 PAKLTIKPGDTVEFLNNKVPPHNVVFDAA-----LNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE--   91 (106)
T ss_dssp             SSEEEECTTCEEEEEECSSSCCCBEECSS-----SSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT--
T ss_pred             CCEEEECCCCEEEEEECCCCCceEEEeCC-----CCcccccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC--
Confidence            345689999999999764 4799975432     2211          001112333 356888   88999999999  


Q ss_pred             CCCCCCCeEEEEee
Q 020242           79 GHCLGGQKLAINVS   92 (329)
Q Consensus        79 ~HC~~GmKl~I~V~   92 (329)
                      .||+.||+..|.|.
T Consensus        92 ~H~~~GM~G~i~V~  105 (106)
T 2gim_A           92 PHRGAGMVGKITVA  105 (106)
T ss_dssp             TTGGGTCEEEEEEC
T ss_pred             ChhhcCcEEEEEEc
Confidence            89999999999985

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.34  E-value=1.1e-06  Score=68.73  Aligned_cols=76  Identities=25%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCccc---ccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSS---FNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAI   89 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~---y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I   89 (329)
                      ....++++||+|+|.+.. ..|+|+......   .+.+.. +..........+++++++|.|+|+|.  .||..||+..|
T Consensus        18 P~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i   94 (97)
T 1b3i_A           18 PKALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSN-TKLAIAPGSFYSVTLGTPGTYSFYCT--PHRGAGMVGTI   94 (97)
T ss_dssp             SSEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCB-CCCCCSCSCCEEEECCSCSEEEEECS--STTTTTCEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccc-cceecCCCCEEEEEeCCCeEEEEEcc--ChhhcCCEEEE
Confidence            455789999999999764 379997653211   000101 11111122335788999999999999  89999999999


Q ss_pred             Eee
Q 020242           90 NVS   92 (329)
Q Consensus        90 ~V~   92 (329)
                      .|.
T Consensus        95 ~V~   97 (97)
T 1b3i_A           95 TVE   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            883

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.23  E-value=1.3e-06  Score=68.37  Aligned_cols=77  Identities=21%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             cCCCceeeCCEEEEEEcCC-CCcEEEeCcc---cccCCCCC--CCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCe
Q 020242           14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQS---SFNACNTT--SPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQK   86 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~~---~y~~C~~~--~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmK   86 (329)
                      ...+++++||+|+|..... .|+|+.....   +++.+...  ........|. .+++++++|.|+|+|.  .||+.||+
T Consensus        16 P~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~G~y~~~C~--~H~~~gM~   93 (99)
T 1byp_A           16 PSDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCA--PHAGAGMV   93 (99)
T ss_dssp             SSEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECG--GGTTTTCE
T ss_pred             CCEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCCcEEEEEcC--CccccCCE
Confidence            4456899999999988753 7998764321   12211100  0001223343 5789999999999999  89999999


Q ss_pred             EEEEee
Q 020242           87 LAINVS   92 (329)
Q Consensus        87 l~I~V~   92 (329)
                      ..|.|.
T Consensus        94 G~i~V~   99 (99)
T 1byp_A           94 GKVTVN   99 (99)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999883

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.22  E-value=1e-06  Score=69.36  Aligned_cols=77  Identities=10%  Similarity=0.094  Sum_probs=52.6

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCccccc----CCCCCCCC----cccCCC-CcEEEecccCceEEEcCCCCCCCC
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSSFN----ACNTTSPL----SRTTNS-PASVTLTASGPHYFICSFPGHCLG   83 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~y~----~C~~~~~~----~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~   83 (329)
                      ...+++++||+|+|.... ..|+|+......++    .|.....+    .....| ..+++++++|.|+|+|.  .||..
T Consensus        16 P~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf~~~G~y~y~C~--~H~~~   93 (102)
T 1kdj_A           16 PDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCT--PHKSA   93 (102)
T ss_dssp             SSEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEECS--TTGGG
T ss_pred             CCEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEEeCCCeEEEEEeC--CCccc
Confidence            345789999999999764 37999765333321    11110111    112334 35788899999999999  89999


Q ss_pred             CCeEEEEee
Q 020242           84 GQKLAINVS   92 (329)
Q Consensus        84 GmKl~I~V~   92 (329)
                      ||+..|.|.
T Consensus        94 gM~G~i~V~  102 (102)
T 1kdj_A           94 NMKGTLTVK  102 (102)
T ss_dssp             TCEEEEEEC
T ss_pred             CCeEEEEEC
Confidence            999999883

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.09  E-value=1.2e-06  Score=68.35  Aligned_cols=77  Identities=22%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             cCCCceeeCCEEEEEEcCC-CCcEEEeCcc---cccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEE
Q 020242           14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQS---SFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLA   88 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~~---~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~   88 (329)
                      ....++++||+|+|....+ .|+|+.....   +++.+...........|. .+++++++|.|+|+|.  .||+.||+..
T Consensus        17 P~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~G~y~y~C~--~H~~~gM~G~   94 (98)
T 2plt_A           17 PKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAAGEYGYYCE--PHQGAGMVGK   94 (98)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECG--GGGGGTCEEE
T ss_pred             CCEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCCeEEEEEcC--CccccCCeEE
Confidence            4457899999999988753 7998654211   111110000001233344 4688999999999999  7999999999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus        95 i~V~   98 (98)
T 2plt_A           95 IIVQ   98 (98)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.01  E-value=6.8e-06  Score=64.17  Aligned_cols=77  Identities=12%  Similarity=-0.000  Sum_probs=50.9

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCccc--ccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSS--FNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLAI   89 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~--y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~I   89 (329)
                      ....++++||+|+|.... ..|+|+..+...  -+.............|. .+++++++|.|+|+|.  .||..||+..|
T Consensus        18 P~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G~y~~~C~--~H~~~gM~G~i   95 (98)
T 1pcs_A           18 PSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTYTYYCE--PHRGAGMVGKV   95 (98)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCEEEEEECG--GGTTTTCEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCeEEEEEcC--CccccCCeEEE
Confidence            455789999999999764 479986543210  00000000001223343 4688899999999999  79999999999


Q ss_pred             Eee
Q 020242           90 NVS   92 (329)
Q Consensus        90 ~V~   92 (329)
                      .|.
T Consensus        96 ~V~   98 (98)
T 1pcs_A           96 VVE   98 (98)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            883

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=97.99  E-value=1.5e-05  Score=62.73  Aligned_cols=88  Identities=22%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             EEEEecc-CCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEccccccCCCC-------CCCcccCCCC-C
Q 020242          164 THVVGGA-LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNS-------SSTISKSTNP-P  233 (329)
Q Consensus       164 ~~~VGg~-~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~y~~C~~-------~~~i~~~~~G-~  233 (329)
                      ++.||.+ .+..+.+          ...+++.||+|.|.... ..|+|..-... + .+..       .........| .
T Consensus         4 ~V~~~~~~~~~~f~p----------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~   71 (105)
T 3cvb_A            4 TVKMGADSGLFQFEP----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGES   71 (105)
T ss_dssp             EEEESCTTCCSCEES----------SEEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCE
T ss_pred             EEEEeecCCccEEeC----------CEEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCe
Confidence            5667643 4555432          45789999999998754 47998864211 1 1100       0000112233 3


Q ss_pred             cEEEe---CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          234 TRITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       234 ~~v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..+++   +++|.|+|.|.  .|+..||+..|.|.
T Consensus        72 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  104 (105)
T 3cvb_A           72 YEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE  104 (105)
T ss_dssp             EEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             EEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence            46677   78999999999  79999999999985

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=97.97  E-value=1.6e-05  Score=69.52  Aligned_cols=94  Identities=16%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             CceEEEEeccCCcccCCCCCcCcccccCCCee-eecCEEEEeeC--CC------CceEEEEcccccc-------------
Q 020242          161 QPATHVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYP--AR------VHDVVEVTKAAYD-------------  218 (329)
Q Consensus       161 ~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~--~~------~h~V~~V~~~~y~-------------  218 (329)
                      ...++.|+...++.+.+          +.+++ +.||.|.|.+.  ..      .|+++..+..+++             
T Consensus        41 ~~~~V~I~~~d~m~F~P----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~  110 (167)
T 3ay2_A           41 GNCAATVESNDNMQFNT----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTD  110 (167)
T ss_dssp             -CCEEEEEECTTSCBSC----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGT
T ss_pred             CceEEEEEeCCCceEec----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccc
Confidence            34567776555665532          45777 78997666653  33      2999877544322             


Q ss_pred             --CCCCCCCc---ccCCCCC-cEEEeC----CCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          219 --SCNSSSTI---SKSTNPP-TRITLG----TAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       219 --~C~~~~~i---~~~~~G~-~~v~L~----~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                        .=+..+.+   ..+..|. ..|+++    ++|.|+|+|.+++|=+ |||..|.|.
T Consensus       111 ~v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          111 YVKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             TSCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             cccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence              11111111   1233443 356665    7999999999999999 999999985

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=97.94  E-value=1.9e-05  Score=65.29  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCC--cccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSST--ISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~--i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ...++++||+|.|.+....|+|.....     +.....  ...-......++++++|.|+|+|..  |+.  |+..|.|.
T Consensus        21 ~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~   91 (122)
T 2ux6_A           21 ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVG   91 (122)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEES
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEe
Confidence            568999999999999877899986431     111111  1111122467889999999999997  887  99999997


Q ss_pred             C
Q 020242          266 G  266 (329)
Q Consensus       266 ~  266 (329)
                      .
T Consensus        92 ~   92 (122)
T 2ux6_A           92 D   92 (122)
T ss_dssp             S
T ss_pred             C
Confidence            6

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=97.92  E-value=4e-06  Score=66.19  Aligned_cols=67  Identities=13%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             CCCeeeecCEEEEeeCC---CCceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~---~~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~GmKl~  261 (329)
                      +.+++++||+|.|.+.+   ..|++..-. ...+        .....|.   ..|+.+++|.|.|+|.  .||..||+..
T Consensus        28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~   96 (100)
T 4hci_A           28 NVITIPINESTTLLLKNKGKSEHTFTIKK-LGID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGK   96 (100)
T ss_dssp             SEEEECTTSCEEEEEEECSSSCEEEEEGG-GTEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEE
T ss_pred             CEEEECCCCEEEEEEEcCCCceEEEEEec-CCcc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEE
Confidence            56899999999998753   347776321 1111        1122232   3456679999999996  6999999999


Q ss_pred             EEec
Q 020242          262 VNVT  265 (329)
Q Consensus       262 I~V~  265 (329)
                      |.|.
T Consensus        97 i~Ve  100 (100)
T 4hci_A           97 VIVK  100 (100)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=97.86  E-value=4.8e-05  Score=63.55  Aligned_cols=91  Identities=14%  Similarity=0.233  Sum_probs=57.2

Q ss_pred             EEEEeccCCcccCCCCCcCcccccCCCeeeec-CEEEEeeCC-C-------CceEEEEcccc----------------cc
Q 020242          164 THVVGGALGWTVPPNASVGYQNWARNNNFSVG-DILVFDYPA-R-------VHDVVEVTKAA----------------YD  218 (329)
Q Consensus       164 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vG-D~LvF~y~~-~-------~h~V~~V~~~~----------------y~  218 (329)
                      ++.|+...++.+.+          +..+++.| |.+.|.+.+ +       .|+++..+..+                |.
T Consensus         4 ~v~i~~~d~m~F~p----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v   73 (129)
T 1cuo_A            4 ETTVTSGDTMTYST----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV   73 (129)
T ss_dssp             EEEEEECSSSCCSC----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred             EEEEEeCCCceEcc----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence            45565554555432          56899999 977776643 2       39998875442                21


Q ss_pred             CCCCCCCc---ccCCCCC---cEEEeC---CCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          219 SCNSSSTI---SKSTNPP---TRITLG---TAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       219 ~C~~~~~i---~~~~~G~---~~v~L~---~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      .=+..+.+   ..+..|.   .+|++.   ++|.|+|+|.+++|=+ |||..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            11111111   1233443   244443   8999999999999999 999999985

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=97.76  E-value=5.4e-06  Score=65.44  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=45.9

Q ss_pred             cCCCceeeCCEEEEEEcCC---CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           14 LCLFSFFFFTFSVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      .+..++++||+|.|.+.+.   .|++.. .....+        .....|.   ..++.+++|.|.|+|.  .||..||+.
T Consensus        27 P~~i~v~~G~tV~~~~~n~d~~~H~~~~-~~~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G   95 (100)
T 4hci_A           27 PNVITIPINESTTLLLKNKGKSEHTFTI-KKLGID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEG   95 (100)
T ss_dssp             SSEEEECTTSCEEEEEEECSSSCEEEEE-GGGTEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEE
T ss_pred             CCEEEECCCCEEEEEEEcCCCceEEEEE-ecCCcc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEE
Confidence            3457899999999998643   366632 111111        1122333   2456689999999996  699999999


Q ss_pred             EEEee
Q 020242           88 AINVS   92 (329)
Q Consensus        88 ~I~V~   92 (329)
                      .|.|.
T Consensus        96 ~i~Ve  100 (100)
T 4hci_A           96 KVIVK  100 (100)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99884

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=97.75  E-value=3.9e-05  Score=61.06  Aligned_cols=67  Identities=21%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEcccc----ccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKAA----YDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~----y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~  261 (329)
                      ..+++++||+|.|..... .|+|...+..+    |+.+       .+..| ...++++++|.|+|+|..  |.  ||+..
T Consensus        33 ~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~  101 (105)
T 2ov0_A           33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK  101 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            568999999999987654 79988543211    2221       12223 356788999999999987  54  99999


Q ss_pred             EEec
Q 020242          262 VNVT  265 (329)
Q Consensus       262 I~V~  265 (329)
                      |.|.
T Consensus       102 i~V~  105 (105)
T 2ov0_A          102 VVVE  105 (105)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9884

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=97.69  E-value=7.7e-05  Score=59.59  Aligned_cols=67  Identities=22%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEccc----cccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKA----AYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~----~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~  261 (329)
                      ...++++||+|.|..... .|+|...+..    .|+.       ..+..| ...++++++|.|.|+|..  |.  ||+..
T Consensus        34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~  102 (106)
T 1id2_A           34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  102 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            568999999999987654 6998754322    1211       112233 356888999999999997  87  99999


Q ss_pred             EEec
Q 020242          262 VNVT  265 (329)
Q Consensus       262 I~V~  265 (329)
                      |.|.
T Consensus       103 I~V~  106 (106)
T 1id2_A          103 VIVE  106 (106)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=97.63  E-value=0.00016  Score=60.30  Aligned_cols=77  Identities=25%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             CCCee-eecCEEEEeeCC--C------CceEEEEcccc----------------ccCCCCCCCc---ccCCCCC-cEEEe
Q 020242          188 RNNNF-SVGDILVFDYPA--R------VHDVVEVTKAA----------------YDSCNSSSTI---SKSTNPP-TRITL  238 (329)
Q Consensus       188 ~~~~f-~vGD~LvF~y~~--~------~h~V~~V~~~~----------------y~~C~~~~~i---~~~~~G~-~~v~L  238 (329)
                      +.+++ +.||++.|.+.+  .      .|+++..+..+                |..=+..+.+   ..+..|. ..|++
T Consensus        17 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~~vtf   96 (128)
T 2iaa_C           17 KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTF   96 (128)
T ss_dssp             SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred             CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEEEEEE
Confidence            44566 669977776643  2      39998765432                2211111111   1233443 34444


Q ss_pred             --C--CCCc-EEEEcCCCCCCCCCCeEEEEec
Q 020242          239 --G--TAGE-HYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       239 --~--~~G~-~YFic~~~~HC~~GmKl~I~V~  265 (329)
                        .  ++|. |.|+|.+++|=+ |||..|.|.
T Consensus        97 ~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           97 DVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             ESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             eccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence              3  6785 999999999999 999999985

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=97.59  E-value=0.00014  Score=60.63  Aligned_cols=91  Identities=19%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             EEEEeccCCcccCCCCCcCcccccCCCee-eecCEEEEeeCC--C------CceEEEEcccc----------------cc
Q 020242          164 THVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYPA--R------VHDVVEVTKAA----------------YD  218 (329)
Q Consensus       164 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~~--~------~h~V~~V~~~~----------------y~  218 (329)
                      ++.|+...+..+.+          +.+++ +.||.+.|.+.+  .      .|+++..+..+                |.
T Consensus         4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T 2ccw_A            4 EATVESNDAMQYNV----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYV   73 (129)
T ss_dssp             EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEeCCCccEec----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccc
Confidence            45565554555422          34556 669976666643  2      39999775442                22


Q ss_pred             CCCCCCCc---ccCCCCC-cEEE--eC--CCCc-EEEEcCCCCCCCCCCeEEEEec
Q 020242          219 SCNSSSTI---SKSTNPP-TRIT--LG--TAGE-HYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       219 ~C~~~~~i---~~~~~G~-~~v~--L~--~~G~-~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      .=+..+.+   ..+..|. ..|+  +.  ++|. |+|+|.+++|=+ |||..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A           74 KAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence            11111111   1233343 2344  43  5665 999999999999 999999985

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=97.57  E-value=0.00015  Score=60.51  Aligned_cols=91  Identities=21%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             EEEEeccCCcccCCCCCcCcccccCCCee-eecCEEEEeeCC--C------CceEEEEcccccc----------------
Q 020242          164 THVVGGALGWTVPPNASVGYQNWARNNNF-SVGDILVFDYPA--R------VHDVVEVTKAAYD----------------  218 (329)
Q Consensus       164 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f-~vGD~LvF~y~~--~------~h~V~~V~~~~y~----------------  218 (329)
                      ++.|+...++.+.+          +.+++ +.||+|.|.+.+  .      .|+++..+..+.+                
T Consensus         4 ~v~v~~~d~m~F~p----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~   73 (128)
T 1nwp_A            4 KVTVDSTDQMSFNT----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYL   73 (128)
T ss_dssp             EEEEEECTTSCBSC----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTS
T ss_pred             EEEEEeCCCccEec----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccc
Confidence            45566555566533          45777 789987776643  2      2999876543221                


Q ss_pred             CCCCCCCc---ccCCCCC-cEEEeC----CCCc-EEEEcCCCCCCCCCCeEEEEec
Q 020242          219 SCNSSSTI---SKSTNPP-TRITLG----TAGE-HYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       219 ~C~~~~~i---~~~~~G~-~~v~L~----~~G~-~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      .=+..+.+   ..+..|. ..|+++    ++|. |+|+|.+++|=+ |||..|.|.
T Consensus        74 ~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  128 (128)
T 1nwp_A           74 KDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK  128 (128)
T ss_dssp             CTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred             ccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence            11111111   1233443 345443    5676 999999999999 999999984

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=97.49  E-value=6.5e-05  Score=65.56  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CCce-eeCCEEEEEEcC-C-------CCcEEEeCcccccC---------------CCCCCC---CcccCCCC-cEEEec-
Q 020242           16 LFSF-FFFTFSVFNFAA-G-------NHDVTRVTQSSFNA---------------CNTTSP---LSRTTNSP-ASVTLT-   66 (329)
Q Consensus        16 ~~tf-~vGD~LvF~y~~-~-------~H~V~~V~~~~y~~---------------C~~~~~---~~~~~~G~-~~v~L~-   66 (329)
                      .+++ +.||+|.|.|.+ +       .|+++..+..+++.               =+..+-   ......|. ..|+++ 
T Consensus        59 ~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~svtf~~  138 (167)
T 3ay2_A           59 DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDP  138 (167)
T ss_dssp             EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEEEEECG
T ss_pred             eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEEEEEec
Confidence            3566 779988888853 2       29987765443220               000010   11233443 356665 


Q ss_pred             ---ccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           67 ---ASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        67 ---~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                         ++|.|+|+|++++|=+ |||..|.|.
T Consensus       139 ~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          139 AKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             GGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             CCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence               7899999999999988 999999985

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=97.49  E-value=0.00018  Score=59.35  Aligned_cols=72  Identities=17%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCC--CcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSP--LSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~--~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      ....++++||+|.|.+....|+|+...     .|.....  ...-.....+++++++|.|+|+|+.  |+.  |+..|.|
T Consensus        20 P~~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V   90 (122)
T 2ux6_A           20 PASLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQV   90 (122)
T ss_dssp             SSEEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEE
Confidence            455789999999999987789996543     1221111  1111122357899999999999997  777  9999999


Q ss_pred             ecC
Q 020242           92 SAR   94 (329)
Q Consensus        92 ~~~   94 (329)
                      ...
T Consensus        91 ~~~   93 (122)
T 2ux6_A           91 GDA   93 (122)
T ss_dssp             SSS
T ss_pred             eCC
Confidence            753

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=97.47  E-value=0.00043  Score=57.70  Aligned_cols=78  Identities=15%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             cCCCceeeC-CEEEEEEcC-C-------CCcEEEeCccccc----------------CCCCCCCC---cccCCCC-cEEE
Q 020242           14 LCLFSFFFF-TFSVFNFAA-G-------NHDVTRVTQSSFN----------------ACNTTSPL---SRTTNSP-ASVT   64 (329)
Q Consensus        14 a~~~tf~vG-D~LvF~y~~-~-------~H~V~~V~~~~y~----------------~C~~~~~~---~~~~~G~-~~v~   64 (329)
                      ....+++.| |.+.|.|.+ +       .|+++..+..+++                .=+..+-+   .....|. ..|+
T Consensus        17 p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~svt   96 (129)
T 1cuo_A           17 TRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVK   96 (129)
T ss_dssp             CSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEE
T ss_pred             cCeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEEE
Confidence            344688999 988888864 3       3998776543221                00001111   1233443 3455


Q ss_pred             ec-----ccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           65 LT-----ASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        65 L~-----~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      ++     ++|.|+|+|++++|=+ |||..|.|.
T Consensus        97 f~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           97 FKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             EEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             EeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            54     7899999999999988 899999985

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=97.46  E-value=5.3e-05  Score=66.72  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=53.2

Q ss_pred             eeeecCEEEE---eeCC------CCceEEEEccccccCCCCCC-C--cccCC--CCCcEEEeC-------------CCC-
Q 020242          191 NFSVGDILVF---DYPA------RVHDVVEVTKAAYDSCNSSS-T--ISKST--NPPTRITLG-------------TAG-  242 (329)
Q Consensus       191 ~f~vGD~LvF---~y~~------~~h~V~~V~~~~y~~C~~~~-~--i~~~~--~G~~~v~L~-------------~~G-  242 (329)
                      ..++||.|-|   +|..      ..+.|++|++++|+.|+... .  +..-+  .+...|++.             ++| 
T Consensus        25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~  104 (178)
T 1iko_P           25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK  104 (178)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            4567999988   4532      23789999999999999863 2  11111  233344331             356 


Q ss_pred             cEEEEcCCC-----------CCCCC-CCeEEEEecCCCCC
Q 020242          243 EHYFFCTFP-----------GHCSA-GQKLAVNVTGGSST  270 (329)
Q Consensus       243 ~~YFic~~~-----------~HC~~-GmKl~I~V~~~~~~  270 (329)
                      .|||||+-.           |+|.. +|||.|.|......
T Consensus       105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~  144 (178)
T 1iko_P          105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS  144 (178)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred             ceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence            799999864           79994 99999999765543

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=97.42  E-value=0.00024  Score=56.63  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=46.8

Q ss_pred             CCCceeeCCEEEEEEcCC-CCcEEEeCcc----cccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEE
Q 020242           15 CLFSFFFFTFSVFNFAAG-NHDVTRVTQS----SFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLA   88 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~-~H~V~~V~~~----~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~   88 (329)
                      ...++++||+|.|..... .|+|+..+..    .|++       ..+..|. .+++++++|.|.|+|+.  |.  ||+..
T Consensus        34 ~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~  102 (106)
T 1id2_A           34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  102 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            446889999999986543 6998653321    0211       1123333 46888999999999997  76  99999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus       103 I~V~  106 (106)
T 1id2_A          103 VIVE  106 (106)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.39  E-value=0.00024  Score=59.17  Aligned_cols=67  Identities=22%  Similarity=0.232  Sum_probs=48.4

Q ss_pred             CCCeeeecCEEEEeeCCC-CceEEEEccc----cccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYPAR-VHDVVEVTKA----AYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-~h~V~~V~~~----~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~  261 (329)
                      ...++++||+|.|..... .|+|...+..    .|+.       ..+..| ...++++++|.|+|+|..  |.  ||+..
T Consensus        60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~  128 (132)
T 3c75_A           60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  128 (132)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEE
Confidence            568999999999987654 6999865322    1211       112233 346788999999999997  76  99999


Q ss_pred             EEec
Q 020242          262 VNVT  265 (329)
Q Consensus       262 I~V~  265 (329)
                      |.|.
T Consensus       129 I~V~  132 (132)
T 3c75_A          129 VIVE  132 (132)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=97.31  E-value=0.00025  Score=55.51  Aligned_cols=75  Identities=11%  Similarity=0.031  Sum_probs=49.0

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCcccccCCCC-------CCCCcccCCCC-cEEEe---cccCceEEEcCCCCCC
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSSFNACNT-------TSPLSRTTNSP-ASVTL---TASGPHYFICSFPGHC   81 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~-------~~~~~~~~~G~-~~v~L---~~~G~~yFiCs~~~HC   81 (329)
                      ....+++.||+|+|.... ..|+|..-.. .+. +..       .........|. .++++   +++|.++|+|.  .|+
T Consensus        18 p~~i~v~~Gd~V~~~N~~~~~H~v~~~~~-~~~-~~~g~~~~~~~~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~--~H~   93 (105)
T 3cvb_A           18 PANVTVHPGDTVKWVNNKLPPHNILFDDK-QVP-GASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA--PHR   93 (105)
T ss_dssp             SSEEEECTTEEEEEEECSSCCEEEEECTT-SSG-GGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECT--TTG
T ss_pred             CCEEEEcCCCEEEEEECCCCCCeEEEeCC-CCC-cccccccccccccccccCCCCeEEEEEecCCCCeeEEEEeC--Cch
Confidence            344688999999998653 4798865321 111 100       00001123333 46777   78999999999  799


Q ss_pred             CCCCeEEEEee
Q 020242           82 LGGQKLAINVS   92 (329)
Q Consensus        82 ~~GmKl~I~V~   92 (329)
                      ..||+..|.|.
T Consensus        94 ~~GM~G~i~V~  104 (105)
T 3cvb_A           94 GAGMVGKITVE  104 (105)
T ss_dssp             GGTCEEEEEEC
T ss_pred             hcCCEEEEEEc
Confidence            99999999985

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=97.30  E-value=0.00043  Score=54.91  Aligned_cols=67  Identities=15%  Similarity=0.055  Sum_probs=46.3

Q ss_pred             CCCceeeCCEEEEEEcCC-CCcEEEeCccc----ccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEE
Q 020242           15 CLFSFFFFTFSVFNFAAG-NHDVTRVTQSS----FNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLA   88 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~   88 (329)
                      ...++++||+|.|..... .|+|......+    |+++       ....|. .+++++++|.|+|+|..  |.  ||+..
T Consensus        33 ~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~  101 (105)
T 2ov0_A           33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK  101 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence            346889999999986644 69986532211    2221       122333 46888999999999997  43  99999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus       102 i~V~  105 (105)
T 2ov0_A          102 VVVE  105 (105)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9873

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.20  E-value=0.00057  Score=56.80  Aligned_cols=67  Identities=13%  Similarity=0.077  Sum_probs=46.9

Q ss_pred             CCCceeeCCEEEEEEcCC-CCcEEEeCcc----cccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeEE
Q 020242           15 CLFSFFFFTFSVFNFAAG-NHDVTRVTQS----SFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKLA   88 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~-~H~V~~V~~~----~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl~   88 (329)
                      ...++++||+|.|..... .|+|+..+..    .|++       .....|. .+++++++|.|+|+|+.  |.  ||+..
T Consensus        60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~  128 (132)
T 3c75_A           60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK  128 (132)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred             CEEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEE
Confidence            446889999999986543 6998654321    1221       1123333 46888999999999997  65  99999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus       129 I~V~  132 (132)
T 3c75_A          129 VIVE  132 (132)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=97.07  E-value=0.00051  Score=57.19  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=47.9

Q ss_pred             CCCce-eeCCEEEEEEcCC--------CCcEEEeCccccc----------------CCCCCCCC---cccCCCC-cEEEe
Q 020242           15 CLFSF-FFFTFSVFNFAAG--------NHDVTRVTQSSFN----------------ACNTTSPL---SRTTNSP-ASVTL   65 (329)
Q Consensus        15 ~~~tf-~vGD~LvF~y~~~--------~H~V~~V~~~~y~----------------~C~~~~~~---~~~~~G~-~~v~L   65 (329)
                      ...++ +.||+|.|.|.+.        .|+++..+..+.+                .=+..+-+   .....|. ..|++
T Consensus        18 ~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~svtf   97 (128)
T 1nwp_A           18 KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSVTF   97 (128)
T ss_dssp             SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred             CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEEEEEE
Confidence            34566 7799988888643        2998765433221                00000001   1234444 35665


Q ss_pred             c----ccCc-eEEEcCCCCCCCCCCeEEEEee
Q 020242           66 T----ASGP-HYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        66 ~----~~G~-~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      +    ++|. |+|+|++++|=+ |||..|.|.
T Consensus        98 ~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  128 (128)
T 1nwp_A           98 DVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK  128 (128)
T ss_dssp             EGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred             eccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence            4    4676 999999999988 999999883

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=97.07  E-value=0.0021  Score=53.50  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             Cce-eeCCEEEEEEcCC--------CCcEEEeCccc----------------ccCCCCCCC---CcccCCCC-cEEEec-
Q 020242           17 FSF-FFFTFSVFNFAAG--------NHDVTRVTQSS----------------FNACNTTSP---LSRTTNSP-ASVTLT-   66 (329)
Q Consensus        17 ~tf-~vGD~LvF~y~~~--------~H~V~~V~~~~----------------y~~C~~~~~---~~~~~~G~-~~v~L~-   66 (329)
                      +++ +.||+|.|.|.+.        .|+++..+..+                |..=+..+-   ......|. ..|+++ 
T Consensus        19 i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~~vtf~~   98 (128)
T 2iaa_C           19 IVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTFDV   98 (128)
T ss_dssp             EEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEES
T ss_pred             EEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEEEEEEec
Confidence            345 5599888888643        29987654332                211010110   11234444 356654 


Q ss_pred             ---ccCc-eEEEcCCCCCCCCCCeEEEEee
Q 020242           67 ---ASGP-HYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        67 ---~~G~-~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                         ++|. |.|+|++++|=+ |||..|.|.
T Consensus        99 ~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           99 SKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             SCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             cccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence               6785 999999999988 999999985

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=96.99  E-value=0.0015  Score=54.35  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=46.0

Q ss_pred             Cce-eeCCEEEEEEcCC--------CCcEEEeCccccc----------------CCCCCCCC---cccCCCC-cEEEec-
Q 020242           17 FSF-FFFTFSVFNFAAG--------NHDVTRVTQSSFN----------------ACNTTSPL---SRTTNSP-ASVTLT-   66 (329)
Q Consensus        17 ~tf-~vGD~LvF~y~~~--------~H~V~~V~~~~y~----------------~C~~~~~~---~~~~~G~-~~v~L~-   66 (329)
                      .++ +.||+|.|.|.+.        .|+++..+..+++                .=+..+-+   .....|. ..|+++ 
T Consensus        20 i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~svtf~~   99 (129)
T 2ccw_A           20 IVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDV   99 (129)
T ss_dssp             EEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEG
T ss_pred             EEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEEEEEEec
Confidence            344 5599888888643        2998776543221                10101101   1233443 345554 


Q ss_pred             ---ccCc-eEEEcCCCCCCCCCCeEEEEee
Q 020242           67 ---ASGP-HYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        67 ---~~G~-~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                         ++|. |+|+|++++|=+ |||..|.|.
T Consensus       100 ~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A          100 SKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             GGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             cccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence               4665 999999999988 999999985

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=96.71  E-value=0.00097  Score=58.69  Aligned_cols=79  Identities=14%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             ceeeCCEEEEE---EcC------CCCcEEEeCcccccCCCCCC-CCccc--C--CCCcEEEec-------------ccC-
Q 020242           18 SFFFFTFSVFN---FAA------GNHDVTRVTQSSFNACNTTS-PLSRT--T--NSPASVTLT-------------ASG-   69 (329)
Q Consensus        18 tf~vGD~LvF~---y~~------~~H~V~~V~~~~y~~C~~~~-~~~~~--~--~G~~~v~L~-------------~~G-   69 (329)
                      .+++||.|-|-   |..      ..+.|++|++++|+.|+... ....+  .  .+...+++.             +.| 
T Consensus        25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~  104 (178)
T 1iko_P           25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK  104 (178)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            34569999886   322      24789999999999998763 21111  1  223334432             245 


Q ss_pred             ceEEEcCCC-----------CCCC-CCCeEEEEeecCCC
Q 020242           70 PHYFICSFP-----------GHCL-GGQKLAINVSARGS   96 (329)
Q Consensus        70 ~~yFiCs~~-----------~HC~-~GmKl~I~V~~~~~   96 (329)
                      .|||||+-.           ++|. .+|||.|.|.....
T Consensus       105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~  143 (178)
T 1iko_P          105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS  143 (178)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred             ceEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence            789999874           7896 49999999976543

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=96.60  E-value=0.0078  Score=58.92  Aligned_cols=73  Identities=21%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             CCCceeeCCEEEEEEcCC---CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCCCCCCCCeEE
Q 020242           15 CLFSFFFFTFSVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCLGGQKLA   88 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~~GmKl~   88 (329)
                      ..++++.||+|+|++.+.   .|++..-.......|.       ...|.   .+|++++.|++||.|.+.+|=..||+..
T Consensus        55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~  127 (447)
T 2dv6_A           55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN  127 (447)
T ss_dssp             CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred             CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence            357899999999999743   3776431222222232       22233   3466688999999999999988899999


Q ss_pred             EEeecC
Q 020242           89 INVSAR   94 (329)
Q Consensus        89 I~V~~~   94 (329)
                      |.|...
T Consensus       128 i~V~~~  133 (447)
T 2dv6_A          128 IQVLPG  133 (447)
T ss_dssp             EEEESS
T ss_pred             EEEeCC
Confidence            999754

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=96.47  E-value=0.0017  Score=51.68  Aligned_cols=67  Identities=13%  Similarity=0.061  Sum_probs=44.5

Q ss_pred             CCCeeeecCEEEEeeCC---CCceEEEEccccccCCCCCCCcccCCCCC-cE--EEeCCCCcEEEEcCCCCCCCC-CCeE
Q 020242          188 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYDSCNSSSTISKSTNPP-TR--ITLGTAGEHYFFCTFPGHCSA-GQKL  260 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~---~~h~V~~V~~~~y~~C~~~~~i~~~~~G~-~~--v~L~~~G~~YFic~~~~HC~~-GmKl  260 (329)
                      ...+++.||.|.|.+.+   ..|++..-+. +.        ......|. ..  |+.+++|.|+|.|..  ||.. +|+.
T Consensus        38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~-~~--------~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g  106 (112)
T 1iby_A           38 ETLVVKKGDAVKVVVENKSPISEGFSIDAF-GV--------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG  106 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEEGGG-TE--------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred             CEEEEeCCCEEEEEEEECCCCeEEEEEcCC-Cc--------eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence            45789999999997753   2588763221 11        11223343 23  444899999999988  7753 4999


Q ss_pred             EEEec
Q 020242          261 AVNVT  265 (329)
Q Consensus       261 ~I~V~  265 (329)
                      .|.|.
T Consensus       107 ~i~V~  111 (112)
T 1iby_A          107 TLNVV  111 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99985

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=96.33  E-value=0.0031  Score=53.39  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             CeeeecCEEEE---eeCCC------CceEEEEccccccCCCCCC-CcccC----CCCCcEEEeC-------------CCC
Q 020242          190 NNFSVGDILVF---DYPAR------VHDVVEVTKAAYDSCNSSS-TISKS----TNPPTRITLG-------------TAG  242 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~~------~h~V~~V~~~~y~~C~~~~-~i~~~----~~G~~~v~L~-------------~~G  242 (329)
                      ...++||.|-|   +|..+      ...+++|++++|+.|+... ....+    -.+..++++.             ++|
T Consensus        23 v~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g  102 (140)
T 2vsm_B           23 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKN  102 (140)
T ss_dssp             ECCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTT
T ss_pred             EEecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCC
Confidence            34567999987   44322      4678889999999998863 21111    1233333321             456


Q ss_pred             -cEEEEcCCC-----------CCCC-CCCeEEEEecC
Q 020242          243 -EHYFFCTFP-----------GHCS-AGQKLAVNVTG  266 (329)
Q Consensus       243 -~~YFic~~~-----------~HC~-~GmKl~I~V~~  266 (329)
                       .||||++-.           |-|. ..|||.|.|..
T Consensus       103 ~~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~  139 (140)
T 2vsm_B          103 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH  139 (140)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence             688898753           5788 58999999963

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=96.06  E-value=0.016  Score=48.35  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=46.4

Q ss_pred             CCCeeeecCEEEEeeCC--CCceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCC---CCCe
Q 020242          188 RNNNFSVGDILVFDYPA--RVHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCS---AGQK  259 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~--~~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~---~GmK  259 (329)
                      +..++.+||.+.|...+  -.|++..-+ -+.+        .....|   ...++++++|.|+|+|..  +|.   .+|+
T Consensus        60 ~~l~Vp~G~~V~~~vts~DV~Hsf~ip~-~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~  128 (135)
T 2cua_A           60 NPIEVPQGAEIVFKITSPDVIHGFHVEG-TNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF  128 (135)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEETT-SSCE--------EEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCE
T ss_pred             CEEEEcCCCEEEEEEEeCCccceEEecC-CCce--------eEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCE
Confidence            46899999999999854  347765311 1111        111223   346888999999999987  444   7899


Q ss_pred             EEEEecC
Q 020242          260 LAVNVTG  266 (329)
Q Consensus       260 l~I~V~~  266 (329)
                      +.|.|..
T Consensus       129 g~v~V~~  135 (135)
T 2cua_A          129 GTIVVKE  135 (135)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999863

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=95.93  E-value=0.0093  Score=50.54  Aligned_cols=76  Identities=20%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             CeeeecCEEEE---eeCC---------CCceEEEEccccccCCCCCC-CcccC----CCCCcEEEe------------C-
Q 020242          190 NNFSVGDILVF---DYPA---------RVHDVVEVTKAAYDSCNSSS-TISKS----TNPPTRITL------------G-  239 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~---------~~h~V~~V~~~~y~~C~~~~-~i~~~----~~G~~~v~L------------~-  239 (329)
                      ..+++||.|-+   +|..         ....+++|++++|++|+... +...+    -.+..+|++            . 
T Consensus        22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF  101 (141)
T 3d12_B           22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF  101 (141)
T ss_dssp             ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence            46788999977   4443         24578899999999998863 21111    112222221            0 


Q ss_pred             CCC-cEEEEcCC-----------CCCCC-CCCeEEEEec
Q 020242          240 TAG-EHYFFCTF-----------PGHCS-AGQKLAVNVT  265 (329)
Q Consensus       240 ~~G-~~YFic~~-----------~~HC~-~GmKl~I~V~  265 (329)
                      ++| .||||++-           +|-|. +.|||.|.|.
T Consensus       102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence            455 68899875           35788 4899999985

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=95.92  E-value=0.092  Score=49.41  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=30.6

Q ss_pred             cEEEeCCCCcEEEEcCCCCCC-CCCCeEEEEecCCCC
Q 020242          234 TRITLGTAGEHYFFCTFPGHC-SAGQKLAVNVTGGSS  269 (329)
Q Consensus       234 ~~v~L~~~G~~YFic~~~~HC-~~GmKl~I~V~~~~~  269 (329)
                      ..|+.+.+|.++|.|....|+ ..||...|+|.....
T Consensus       285 vlv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~  321 (336)
T 1oe1_A          285 ALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN  321 (336)
T ss_dssp             EEEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred             EEEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence            356778899999999988898 899999999986543

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=95.84  E-value=0.012  Score=49.79  Aligned_cols=76  Identities=21%  Similarity=0.319  Sum_probs=49.7

Q ss_pred             CeeeecCEEEE---eeCC-------CCceEEEEccccccCCCCCCCcc-c------CC-CCCcEEEe-------------
Q 020242          190 NNFSVGDILVF---DYPA-------RVHDVVEVTKAAYDSCNSSSTIS-K------ST-NPPTRITL-------------  238 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~-------~~h~V~~V~~~~y~~C~~~~~i~-~------~~-~G~~~v~L-------------  238 (329)
                      +.+++||.|-+   +|..       ....+++|++++|++|+...... .      +. .+..+|++             
T Consensus        23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E  102 (138)
T 1shx_A           23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence            56889999977   4542       24577799999999998754221 1      11 13434332             


Q ss_pred             CCCC-cEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 020242          239 GTAG-EHYFFCTF-----PGHCSAGQKLAVNVTGGS  268 (329)
Q Consensus       239 ~~~G-~~YFic~~-----~~HC~~GmKl~I~V~~~~  268 (329)
                      =++| .||||++-     ++-|   |||.|.|....
T Consensus       103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~  135 (138)
T 1shx_A          103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN  135 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred             ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence            1466 68888764     3456   99999998754

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=95.74  E-value=0.013  Score=46.39  Aligned_cols=66  Identities=8%  Similarity=-0.010  Sum_probs=43.1

Q ss_pred             CCceeeCCEEEEEEcCC---CCcEEEeCcccccCCCCCCCCcccCCCC-cEEEe--cccCceEEEcCCCCCCC-CCCeEE
Q 020242           16 LFSFFFFTFSVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTL--TASGPHYFICSFPGHCL-GGQKLA   88 (329)
Q Consensus        16 ~~tf~vGD~LvF~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L--~~~G~~yFiCs~~~HC~-~GmKl~   88 (329)
                      ..+++.||.|.|.+.+.   .|++.. ...+.        ......|. ..+++  +++|.++|.|..  ||. .+|+..
T Consensus        39 ~i~v~~G~~V~~~~~n~d~~~H~~~i-~~~~~--------~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~  107 (112)
T 1iby_A           39 TLVVKKGDAVKVVVENKSPISEGFSI-DAFGV--------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT  107 (112)
T ss_dssp             EEEEETTCEEEEEEEECSSSCEEEEE-GGGTE--------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEE-cCCCc--------eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence            36889999999988632   466642 21111        11233343 34444  899999999987  664 349999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus       108 i~V~  111 (112)
T 1iby_A          108 LNVV  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9885

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=95.68  E-value=0.011  Score=52.06  Aligned_cols=77  Identities=19%  Similarity=0.345  Sum_probs=48.5

Q ss_pred             CeeeecCEEEE---eeCCC--------CceEEEEccccccCCCCCC-Ccc------cCC-CCCcEEEe------------
Q 020242          190 NNFSVGDILVF---DYPAR--------VHDVVEVTKAAYDSCNSSS-TIS------KST-NPPTRITL------------  238 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~~--------~h~V~~V~~~~y~~C~~~~-~i~------~~~-~G~~~v~L------------  238 (329)
                      +.+++||.|-+   +|..+        ...+++|++++|++|+... ...      ... .|..+|++            
T Consensus        50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl  129 (182)
T 3czu_B           50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK  129 (182)
T ss_dssp             EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence            56789999977   45432        3577899999999998764 111      111 23333322            


Q ss_pred             -CCCC-cEEEEcCC----CCCCCCCCeEEEEecCCCC
Q 020242          239 -GTAG-EHYFFCTF----PGHCSAGQKLAVNVTGGSS  269 (329)
Q Consensus       239 -~~~G-~~YFic~~----~~HC~~GmKl~I~V~~~~~  269 (329)
                       =++| .||||++-    +|.|   |||.|.|.....
T Consensus       130 EF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~  163 (182)
T 3czu_B          130 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT  163 (182)
T ss_dssp             CCCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred             eEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence             1456 68888863    5667   999999986554

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=95.60  E-value=0.021  Score=52.96  Aligned_cols=78  Identities=5%  Similarity=0.018  Sum_probs=47.5

Q ss_pred             CCCeeeecCEEEEeeCC-C----CceEEEEccccccCCCCC----CCc--cc--CCCCC---cEEEeCCCCcEEEEcCCC
Q 020242          188 RNNNFSVGDILVFDYPA-R----VHDVVEVTKAAYDSCNSS----STI--SK--STNPP---TRITLGTAGEHYFFCTFP  251 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~-~----~h~V~~V~~~~y~~C~~~----~~i--~~--~~~G~---~~v~L~~~G~~YFic~~~  251 (329)
                      ...+++.||++.|.+.+ +    .|.+..- ...|+--...    .+.  .+  ...|.   ..++.+.+|.+.|.|-+.
T Consensus       195 ~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlh-G~~f~v~~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~  273 (288)
T 3gdc_A          195 FPVKVKQHELVRIHLINVLEYDPINSFHIH-GNFFHYYPTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKT  273 (288)
T ss_dssp             SCEEEETTCCEEEEEEECCCSSSEEEEEET-TCCEEEEETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSSH
T ss_pred             cccccCCCCEEEEEEEeCCCCCcceeEEEc-CCEEEEEcCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecCh
Confidence            35789999999987753 2    1555431 1111100000    000  01  11222   345567899999999999


Q ss_pred             CCCCCCCeEEEEecC
Q 020242          252 GHCSAGQKLAVNVTG  266 (329)
Q Consensus       252 ~HC~~GmKl~I~V~~  266 (329)
                      .|=++||...|+|.+
T Consensus       274 ~H~~~GM~~~~~V~~  288 (288)
T 3gdc_A          274 EFAELGWMGFFEVSA  288 (288)
T ss_dssp             HHHTTTCEEEEEEEC
T ss_pred             HHHhcCCCEEEEEeC
Confidence            999999999999864

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=95.49  E-value=0.015  Score=50.94  Aligned_cols=77  Identities=22%  Similarity=0.297  Sum_probs=50.7

Q ss_pred             CeeeecCEEEE---eeCC-------CCceEEEEccccccCCCCCCCcc-------cC-CCCCcEEEe-------------
Q 020242          190 NNFSVGDILVF---DYPA-------RVHDVVEVTKAAYDSCNSSSTIS-------KS-TNPPTRITL-------------  238 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~-------~~h~V~~V~~~~y~~C~~~~~i~-------~~-~~G~~~v~L-------------  238 (329)
                      +.+++||.|-+   +|..       ....+++|++++|++|+......       .. ..|..+|++             
T Consensus        52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E  131 (177)
T 2x11_B           52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  131 (177)
T ss_dssp             EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence            56889999977   4542       24577799999999998754321       11 123444432             


Q ss_pred             CCCC-cEEEEcCCC-----CCCCCCCeEEEEecCCCC
Q 020242          239 GTAG-EHYFFCTFP-----GHCSAGQKLAVNVTGGSS  269 (329)
Q Consensus       239 ~~~G-~~YFic~~~-----~HC~~GmKl~I~V~~~~~  269 (329)
                      =++| .||||++-.     +-|   |||.|.|.....
T Consensus       132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~  165 (177)
T 2x11_B          132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS  165 (177)
T ss_dssp             CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred             ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence            1456 688887642     346   999999988664

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=95.20  E-value=0.074  Score=44.08  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=44.4

Q ss_pred             CCCeeee-cCEEEEeeCC-C-------CceEEEEccc----------------cccCCCCCCCcc---cCCCCC-cEEEe
Q 020242          188 RNNNFSV-GDILVFDYPA-R-------VHDVVEVTKA----------------AYDSCNSSSTIS---KSTNPP-TRITL  238 (329)
Q Consensus       188 ~~~~f~v-GD~LvF~y~~-~-------~h~V~~V~~~----------------~y~~C~~~~~i~---~~~~G~-~~v~L  238 (329)
                      +.+++.. |++|.|.+.+ +       .|+++..+..                +|-.=+..+.++   .+..|. ..|++
T Consensus        18 ~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf   97 (125)
T 3fsa_A           18 NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTF   97 (125)
T ss_dssp             SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEE
T ss_pred             CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEE
Confidence            4456654 9999888754 3       3999987422                222111112221   234443 34444


Q ss_pred             C-----CCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          239 G-----TAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       239 ~-----~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +     ++|.|-|+|.  +|=  |||..|.|.
T Consensus        98 ~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~  125 (125)
T 3fsa_A           98 DVSKLKEGEQYMFFCA--AHA--AMKGTLTLK  125 (125)
T ss_dssp             EGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred             eCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence            4     6699999999  887  999999884

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=94.67  E-value=0.19  Score=47.17  Aligned_cols=74  Identities=14%  Similarity=0.147  Sum_probs=46.6

Q ss_pred             CceeeCCEEEEEEcCC-----CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCC-----CCCC
Q 020242           17 FSFFFFTFSVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPG-----HCLG   83 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~-----HC~~   83 (329)
                      ++++.||+|++++.+.     -|.+..-...+.+.-   ..+.....|.   ..|+++..|++||-|-..+     |=..
T Consensus        66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~  142 (333)
T 1mzy_A           66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS  142 (333)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred             EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence            4778999999999754     255543211111100   0111233343   3577788999999998864     6678


Q ss_pred             CCeEEEEeec
Q 020242           84 GQKLAINVSA   93 (329)
Q Consensus        84 GmKl~I~V~~   93 (329)
                      ||...+.|..
T Consensus       143 Gl~G~~iV~~  152 (333)
T 1mzy_A          143 GMAGCIMVLP  152 (333)
T ss_dssp             TCEEEEEEEC
T ss_pred             CCEEEEEEcc
Confidence            9999988864

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=94.20  E-value=0.3  Score=40.41  Aligned_cols=72  Identities=14%  Similarity=0.186  Sum_probs=43.2

Q ss_pred             Cceee-CCEEEEEEcCCC--------CcEEEeCcccccC----------------CCCCCCC---cccCCCC-cEEEec-
Q 020242           17 FSFFF-FTFSVFNFAAGN--------HDVTRVTQSSFNA----------------CNTTSPL---SRTTNSP-ASVTLT-   66 (329)
Q Consensus        17 ~tf~v-GD~LvF~y~~~~--------H~V~~V~~~~y~~----------------C~~~~~~---~~~~~G~-~~v~L~-   66 (329)
                      +++.. |++|.|.+.+..        |+++..+.++.+.                =+..+-+   .....|. ..|+++ 
T Consensus        20 i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf~~   99 (125)
T 3fsa_A           20 ITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDV   99 (125)
T ss_dssp             EEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEEEG
T ss_pred             EEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEEeC
Confidence            44543 999999997443        9988764332211                0001111   1234454 356655 


Q ss_pred             ----ccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           67 ----ASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        67 ----~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                          +.|.|-|+|+  +|=  |||..|.|.
T Consensus       100 ~~l~~~G~y~f~C~--gH~--~M~G~v~V~  125 (125)
T 3fsa_A          100 SKLKEGEQYMFFCA--AHA--AMKGTLTLK  125 (125)
T ss_dssp             GGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred             cCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence                4599999999  886  999999873

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=94.04  E-value=0.068  Score=44.52  Aligned_cols=67  Identities=18%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             CCCceeeCCEEEEEEcCC--CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCC---CCCCCCCCe
Q 020242           15 CLFSFFFFTFSVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSF---PGHCLGGQK   86 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~---~~HC~~GmK   86 (329)
                      ...++.+||.|.|...+.  .|++.. ..-+.+        .....|.   ..++++++|.|+|+|+.   .+|  .+|+
T Consensus        60 ~~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M~  128 (135)
T 2cua_A           60 NPIEVPQGAEIVFKITSPDVIHGFHV-EGTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMF  128 (135)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEE-TTSSCE--------EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCE
T ss_pred             CEEEEcCCCEEEEEEEeCCccceEEe-cCCCce--------eEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCCE
Confidence            346899999999999642  365532 111110        1122342   46889999999999987   344  6899


Q ss_pred             EEEEee
Q 020242           87 LAINVS   92 (329)
Q Consensus        87 l~I~V~   92 (329)
                      +.|.|.
T Consensus       129 g~v~V~  134 (135)
T 2cua_A          129 GTIVVK  134 (135)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=93.56  E-value=0.12  Score=44.51  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             CeeeecCEEEE---eeCCC--------CceEEEEccccccCCCCCCCcc-c------C-CCCCcEEEe------------
Q 020242          190 NNFSVGDILVF---DYPAR--------VHDVVEVTKAAYDSCNSSSTIS-K------S-TNPPTRITL------------  238 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~~--------~h~V~~V~~~~y~~C~~~~~i~-~------~-~~G~~~v~L------------  238 (329)
                      +.+++||.|-+   +|..+        ...+++|++++|++|+...... .      . ..|..+|++            
T Consensus        32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~  111 (157)
T 2wo3_B           32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF  111 (157)
T ss_dssp             EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence            56889999977   45321        2357799999999998765211 1      1 113333322            


Q ss_pred             -CCCC-cEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 020242          239 -GTAG-EHYFFCTF-----PGHCSAGQKLAVNVTGGS  268 (329)
Q Consensus       239 -~~~G-~~YFic~~-----~~HC~~GmKl~I~V~~~~  268 (329)
                       =++| .||||++-     +|-|   |||.|.|....
T Consensus       112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~  145 (157)
T 2wo3_B          112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ  145 (157)
T ss_dssp             CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred             eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence             1455 68899874     3456   57888877654

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=93.36  E-value=0.049  Score=53.20  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=52.2

Q ss_pred             CCCeeeecCEEEEeeCCC---CceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEe
Q 020242          188 RNNNFSVGDILVFDYPAR---VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV  264 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~---~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V  264 (329)
                      ..++++.||+|+|++.+.   .|++..-.......|..    ....+-...|+++++|++||.|...+|=..||+..|.|
T Consensus        55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i----~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V  130 (447)
T 2dv6_A           55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN----GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQV  130 (447)
T ss_dssp             CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC----STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEEE
T ss_pred             CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec----CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEEE
Confidence            568999999999888542   37765322222222321    11111123566788999999999989988899999999


Q ss_pred             cCCCC
Q 020242          265 TGGSS  269 (329)
Q Consensus       265 ~~~~~  269 (329)
                      .....
T Consensus       131 ~~~~~  135 (447)
T 2dv6_A          131 LPGNR  135 (447)
T ss_dssp             ESSCC
T ss_pred             eCCcc
Confidence            87543

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*

Probab=93.31  E-value=0.32  Score=44.64  Aligned_cols=94  Identities=16%  Similarity=0.158  Sum_probs=53.8

Q ss_pred             CcccCCCCCcCcccccCCCeeeecCEEEEeeCC---CCceEEEE------ccc-cccCCCCCCC-cc--cCCCCC---cE
Q 020242          172 GWTVPPNASVGYQNWARNNNFSVGDILVFDYPA---RVHDVVEV------TKA-AYDSCNSSST-IS--KSTNPP---TR  235 (329)
Q Consensus       172 GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~---~~h~V~~V------~~~-~y~~C~~~~~-i~--~~~~G~---~~  235 (329)
                      +|.+..   ..|.. ....+++.||++.|.+.+   ..|.+..-      ... .++.-..... ..  ....|.   ..
T Consensus       156 ~~~iNG---~~~~~-~p~i~v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v~~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~  231 (276)
T 3kw8_A          156 DMTINN---RKPHT-GPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQ  231 (276)
T ss_dssp             TTEETT---CCTTC-CCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEE
T ss_pred             ccccce---ecccC-CCCEEEecCCEEEEEEecCCCcceeEEEccceeEEeccCccCCCcccccCCccEEeCCCceEEEE
Confidence            587742   22321 245789999999887753   34555431      111 1111000000 00  111222   23


Q ss_pred             EEeC---CCCcEEEEcCCCCCCCCCCeEEEEecCCCC
Q 020242          236 ITLG---TAGEHYFFCTFPGHCSAGQKLAVNVTGGSS  269 (329)
Q Consensus       236 v~L~---~~G~~YFic~~~~HC~~GmKl~I~V~~~~~  269 (329)
                      ++.+   .+|.++|-|-+..|=..||...+.|.....
T Consensus       232 ~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~  268 (276)
T 3kw8_A          232 IIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG  268 (276)
T ss_dssp             EETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred             EEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence            4444   589999999999999999999999987654

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=92.87  E-value=0.083  Score=44.68  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=47.7

Q ss_pred             ceeeCCEEEEE---EcC---------CCCcEEEeCcccccCCCCCC-CCccc----CCCCcE--------------EEec
Q 020242           18 SFFFFTFSVFN---FAA---------GNHDVTRVTQSSFNACNTTS-PLSRT----TNSPAS--------------VTLT   66 (329)
Q Consensus        18 tf~vGD~LvF~---y~~---------~~H~V~~V~~~~y~~C~~~~-~~~~~----~~G~~~--------------v~L~   66 (329)
                      .+++||.|-+-   |..         ....+++|++++|++|+... +...+    -.+..+              +.+.
T Consensus        23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~  102 (141)
T 3d12_B           23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR  102 (141)
T ss_dssp             CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence            67889999775   332         24568899999999998752 21111    112222              2333


Q ss_pred             ccC-ceEEEcCCC-----------CCCC-CCCeEEEEee
Q 020242           67 ASG-PHYFICSFP-----------GHCL-GGQKLAINVS   92 (329)
Q Consensus        67 ~~G-~~yFiCs~~-----------~HC~-~GmKl~I~V~   92 (329)
                       +| .||||++-.           |-|. ..|||.|.|.
T Consensus       103 -pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          103 -SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             -TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             -CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence             44 578888763           4685 4899999985

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=92.82  E-value=0.098  Score=44.08  Aligned_cols=75  Identities=20%  Similarity=0.280  Sum_probs=46.7

Q ss_pred             CceeeCCEEEEE---EcC-------CCCcEEEeCcccccCCCCCCCC-ccc------C-CCCcEEEe--cc---------
Q 020242           17 FSFFFFTFSVFN---FAA-------GNHDVTRVTQSSFNACNTTSPL-SRT------T-NSPASVTL--TA---------   67 (329)
Q Consensus        17 ~tf~vGD~LvF~---y~~-------~~H~V~~V~~~~y~~C~~~~~~-~~~------~-~G~~~v~L--~~---------   67 (329)
                      +.+++||.|-+-   |..       ....+++|++++|++|+..... ..+      . .|..++++  .+         
T Consensus        23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E  102 (138)
T 1shx_A           23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence            467889999775   331       2456889999999999875432 111      1 13333322  11         


Q ss_pred             --cC-ceEEEcCCC-----CCCCCCCeEEEEeecC
Q 020242           68 --SG-PHYFICSFP-----GHCLGGQKLAINVSAR   94 (329)
Q Consensus        68 --~G-~~yFiCs~~-----~HC~~GmKl~I~V~~~   94 (329)
                        +| .||||++-.     +-|   |||.|.|...
T Consensus       103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~  134 (138)
T 1shx_A          103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPT  134 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCT
T ss_pred             ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEcc
Confidence              56 577886542     345   9999999754

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=92.36  E-value=0.11  Score=45.55  Aligned_cols=77  Identities=21%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             CceeeCCEEEEE---EcC-------CCCcEEEeCcccccCCCCCCCC-ccc-------CCCCcEEEe--c----------
Q 020242           17 FSFFFFTFSVFN---FAA-------GNHDVTRVTQSSFNACNTTSPL-SRT-------TNSPASVTL--T----------   66 (329)
Q Consensus        17 ~tf~vGD~LvF~---y~~-------~~H~V~~V~~~~y~~C~~~~~~-~~~-------~~G~~~v~L--~----------   66 (329)
                      +.+++||.|-+-   |..       ....+++|++++|++|+..... ..+       ..|..++++  .          
T Consensus        52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E  131 (177)
T 2x11_B           52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  131 (177)
T ss_dssp             EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence            357889999775   431       2556889999999999875432 111       113333322  1          


Q ss_pred             -ccC-ceEEEcCCC-----CCCCCCCeEEEEeecCCC
Q 020242           67 -ASG-PHYFICSFP-----GHCLGGQKLAINVSARGS   96 (329)
Q Consensus        67 -~~G-~~yFiCs~~-----~HC~~GmKl~I~V~~~~~   96 (329)
                       ++| .||||++-.     +-|   |||.|.|.....
T Consensus       132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~  165 (177)
T 2x11_B          132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS  165 (177)
T ss_dssp             CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred             ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence             156 577886542     235   999999986543

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=91.98  E-value=0.11  Score=45.79  Aligned_cols=76  Identities=16%  Similarity=0.319  Sum_probs=45.6

Q ss_pred             CceeeCCEEEEE---EcC--------CCCcEEEeCcccccCCCCCC-CCcc------cC-CCCcEEEe--c---------
Q 020242           17 FSFFFFTFSVFN---FAA--------GNHDVTRVTQSSFNACNTTS-PLSR------TT-NSPASVTL--T---------   66 (329)
Q Consensus        17 ~tf~vGD~LvF~---y~~--------~~H~V~~V~~~~y~~C~~~~-~~~~------~~-~G~~~v~L--~---------   66 (329)
                      +.+++||.|-+-   |..        ....+++|++++|++|+... +...      .. .|..+|++  .         
T Consensus        50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl  129 (182)
T 3czu_B           50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK  129 (182)
T ss_dssp             EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence            356889999775   332        23568899999999998764 2111      11 12222221  1         


Q ss_pred             --ccC-ceEEEcCC----CCCCCCCCeEEEEeecCC
Q 020242           67 --ASG-PHYFICSF----PGHCLGGQKLAINVSARG   95 (329)
Q Consensus        67 --~~G-~~yFiCs~----~~HC~~GmKl~I~V~~~~   95 (329)
                        ++| .||||++-    ++.|   |||.|.|....
T Consensus       130 EF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~  162 (182)
T 3czu_B          130 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKI  162 (182)
T ss_dssp             CCCTTCEEEEEEEESSSCCCSC---CEEEEEECC--
T ss_pred             eEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCC
Confidence              255 57788764    3455   99999997543

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=91.92  E-value=0.24  Score=41.77  Aligned_cols=76  Identities=13%  Similarity=0.107  Sum_probs=48.0

Q ss_pred             ceeeCCEEEEEEc---C------CCCcEEEeCcccccCCCCCC-CCccc----CCCCcEEEec-------------ccC-
Q 020242           18 SFFFFTFSVFNFA---A------GNHDVTRVTQSSFNACNTTS-PLSRT----TNSPASVTLT-------------ASG-   69 (329)
Q Consensus        18 tf~vGD~LvF~y~---~------~~H~V~~V~~~~y~~C~~~~-~~~~~----~~G~~~v~L~-------------~~G-   69 (329)
                      ..++||.|-|-=.   .      ....++.|++++|+.|+... ....+    -.+...+++.             ++| 
T Consensus        24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~  103 (140)
T 2vsm_B           24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK  103 (140)
T ss_dssp             CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred             EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence            3467999987632   1      14678889999999998763 22111    1233333332             355 


Q ss_pred             ceEEEcCCC-----------CCCC-CCCeEEEEeec
Q 020242           70 PHYFICSFP-----------GHCL-GGQKLAINVSA   93 (329)
Q Consensus        70 ~~yFiCs~~-----------~HC~-~GmKl~I~V~~   93 (329)
                      .||||++-.           |-|. ..|||.|.|..
T Consensus       104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~  139 (140)
T 2vsm_B          104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH  139 (140)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence            577887753           4685 58999999963

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=91.79  E-value=0.51  Score=40.84  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=46.2

Q ss_pred             CCCeeeecCEEEEeeCCC--CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCC-CCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTF-PGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~--~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~-~~HC~~GmKl~  261 (329)
                      +...+.+|+.+.|...+.  .|+...-+   +.      .......|   ...++.+++|.||++|.. -|+--.+|++.
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~---lg------ik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~  163 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHVEG---TN------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGT  163 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEETT---SS------CEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEE
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEECC---CC------eEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEE
Confidence            568999999999987643  46665311   10      01111223   246788999999999996 23334569999


Q ss_pred             EEecC
Q 020242          262 VNVTG  266 (329)
Q Consensus       262 I~V~~  266 (329)
                      |.|.+
T Consensus       164 V~V~e  168 (168)
T 3s8f_B          164 IVVKE  168 (168)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99863

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=90.71  E-value=0.18  Score=51.90  Aligned_cols=69  Identities=10%  Similarity=0.104  Sum_probs=46.8

Q ss_pred             CCCeeeecCEEEEeeCCC------CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCC---CCCCC
Q 020242          188 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTF---PGHCS  255 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~---~~HC~  255 (329)
                      ...++++||.|.|.+.+.      .|++..-+ ...+        .....|.   ..|+++++|.|||.|..   ..|  
T Consensus       513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--  581 (595)
T 1fwx_A          513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--  581 (595)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred             CEEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence            457899999999987542      47776322 1111        1122232   46788999999999984   355  


Q ss_pred             CCCeEEEEecCC
Q 020242          256 AGQKLAVNVTGG  267 (329)
Q Consensus       256 ~GmKl~I~V~~~  267 (329)
                      .||+..|.|...
T Consensus       582 ~gM~G~IiV~p~  593 (595)
T 1fwx_A          582 MEMRGRMLVEPK  593 (595)
T ss_dssp             TTCEEEEEEECC
T ss_pred             cCCEEEEEEEcC
Confidence            499999999754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.22  E-value=0.29  Score=50.31  Aligned_cols=68  Identities=16%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CCCeeeecCEEEEeeCC------CCceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCCCCCCC-
Q 020242          188 RNNNFSVGDILVFDYPA------RVHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCSAG-  257 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~------~~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~G-  257 (329)
                      ...++.+||.|.|...+      -.|++..-+. ..+        .....|.   ..|+.+++|.|||+|..  +|..+ 
T Consensus       558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPsl-GIK--------~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H  626 (638)
T 3sbq_A          558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNH-GVS--------MEISPQQTSSITFVADKPGLHWYYCSW--FCHALH  626 (638)
T ss_dssp             CEEEEETTCEEEEEEEECCCSTTCCEEEEETTT-TEE--------EEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred             CEEEEecCceeEEEEecCCcCCCceeeeEecCC-Cce--------eeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence            56889999999998754      2577764221 100        1122332   46778999999999998  66654 


Q ss_pred             --CeEEEEecC
Q 020242          258 --QKLAVNVTG  266 (329)
Q Consensus       258 --mKl~I~V~~  266 (329)
                        |+..|.|..
T Consensus       627 s~M~G~ViVEP  637 (638)
T 3sbq_A          627 MEMVGRMMVEP  637 (638)
T ss_dssp             TTCEEEEEEEC
T ss_pred             ccceEEEEEec
Confidence              999999864

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=89.62  E-value=0.4  Score=40.06  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=46.1

Q ss_pred             CeeeecCEEEE---eeCCC--------CceEEEEccccccCCCCCC-Ccc------cCC-CCCcEEEe------------
Q 020242          190 NNFSVGDILVF---DYPAR--------VHDVVEVTKAAYDSCNSSS-TIS------KST-NPPTRITL------------  238 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~~--------~h~V~~V~~~~y~~C~~~~-~i~------~~~-~G~~~v~L------------  238 (329)
                      ..+++||.|-+   .|+.+        ...+.+|++++|++|+... ...      ... .|..+|++            
T Consensus        22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~  101 (132)
T 3hei_B           22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK  101 (132)
T ss_dssp             EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred             EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence            56789999977   55432        3567799999999999765 211      112 24444332            


Q ss_pred             -CCCC-cEEEEcCCCCCCC-CCCeEEEEec
Q 020242          239 -GTAG-EHYFFCTFPGHCS-AGQKLAVNVT  265 (329)
Q Consensus       239 -~~~G-~~YFic~~~~HC~-~GmKl~I~V~  265 (329)
                       =++| .||||++-..|=. .=+||.|.|.
T Consensus       102 EF~pG~~YY~ISt~~~~~~~~cl~l~v~v~  131 (132)
T 3hei_B          102 EFKEGHSYYYISKPIHQHEDRCLRLKVTVK  131 (132)
T ss_dssp             CCCTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred             eecCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence             1456 6888887432222 1278888774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=89.50  E-value=0.17  Score=51.97  Aligned_cols=67  Identities=10%  Similarity=0.051  Sum_probs=44.3

Q ss_pred             CceeeCCEEEEEEcCC------CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCC---CCCCCCC
Q 020242           17 FSFFFFTFSVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSF---PGHCLGG   84 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~---~~HC~~G   84 (329)
                      .++.+||.|.|.+.+.      .|++..-+ .+.+        .....|.   ..|+++++|.|||+|..   ..|  .|
T Consensus       515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~g  583 (595)
T 1fwx_A          515 FTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--ME  583 (595)
T ss_dssp             EEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TT
T ss_pred             EEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cC
Confidence            4778899999998652      46664311 1111        1123343   36788999999999984   355  49


Q ss_pred             CeEEEEeecC
Q 020242           85 QKLAINVSAR   94 (329)
Q Consensus        85 mKl~I~V~~~   94 (329)
                      |+..|.|...
T Consensus       584 M~G~IiV~p~  593 (595)
T 1fwx_A          584 MRGRMLVEPK  593 (595)
T ss_dssp             CEEEEEEECC
T ss_pred             CEEEEEEEcC
Confidence            9999999743

>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*

Probab=89.12  E-value=5.6  Score=36.90  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             CCCcEEEEcCCCCCCCCCCeEEEEecCCCCCC
Q 020242          240 TAGEHYFFCTFPGHCSAGQKLAVNVTGGSSTA  271 (329)
Q Consensus       240 ~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~~  271 (329)
                      .+|.+.|-|-+..|=.+||...++|.......
T Consensus       245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~~  276 (313)
T 3tas_A          245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTI  276 (313)
T ss_dssp             CSEEEEEEECSHHHHHTTCEEEEEEECTTCCC
T ss_pred             CCEeEEEEeCChHHHHCCCeEEEEEECCCCCC
Confidence            58999999999999999999999998877643

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=88.94  E-value=0.55  Score=40.29  Aligned_cols=35  Identities=9%  Similarity=0.138  Sum_probs=25.8

Q ss_pred             CceeeCCEEEEE---EcC--------CCCcEEEeCcccccCCCCCC
Q 020242           17 FSFFFFTFSVFN---FAA--------GNHDVTRVTQSSFNACNTTS   51 (329)
Q Consensus        17 ~tf~vGD~LvF~---y~~--------~~H~V~~V~~~~y~~C~~~~   51 (329)
                      +.+++||.|-+-   |..        ....+++|++++|++|+...
T Consensus        32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   77 (157)
T 2wo3_B           32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ   77 (157)
T ss_dssp             EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence            357789999776   321        23448899999999998755

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}

Probab=88.91  E-value=0.81  Score=43.43  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=49.5

Q ss_pred             CCCeeeecCEEEEeeCC---CCceEEEEccccccCCC---CCCCc------c--cCCCCC-c--EEEe---CCCCcEEEE
Q 020242          188 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYDSCN---SSSTI------S--KSTNPP-T--RITL---GTAGEHYFF  247 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~---~~h~V~~V~~~~y~~C~---~~~~i------~--~~~~G~-~--~v~L---~~~G~~YFi  247 (329)
                      ...+++.||++.|.+.+   ..|.+..-. ..|+--.   ...+.      .  ....|. .  .|+.   +.+|.++|-
T Consensus       209 ~~l~v~~Ge~vri~l~N~g~~~HpfHlHG-h~f~v~~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~~H  287 (343)
T 3cg8_A          209 PDFEATVGDRVEIVMITHGEYYHTFHMHG-HRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYH  287 (343)
T ss_dssp             CCEEEETTCEEEEEEEEESSCCEEEEETT-CCEESSSSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEE
T ss_pred             ccEEeCCCCEEEEEEEcCCccccccEecC-cEEEEeccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEEEe
Confidence            34789999999887743   346554311 1111100   00000      0  112232 2  3442   579999999


Q ss_pred             cCCCCCCCCCCeEEEEecCCCCC
Q 020242          248 CTFPGHCSAGQKLAVNVTGGSST  270 (329)
Q Consensus       248 c~~~~HC~~GmKl~I~V~~~~~~  270 (329)
                      |-+..|=..||...+.|......
T Consensus       288 CHi~~H~~~GM~g~~~V~~~~~~  310 (343)
T 3cg8_A          288 CHVQSHSDMGMVGLFLVKKPDGT  310 (343)
T ss_dssp             ECSHHHHHTTCEEEEEEECTTSC
T ss_pred             CCCHHHHhccCcEEEEEecCCCC
Confidence            99999999999999999876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.19  E-value=0.43  Score=49.14  Aligned_cols=67  Identities=13%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             CCCceeeCCEEEEEEcCC------CCcEEEeCcccccCCCCCCCC-cccCCCC---cEEEecccCceEEEcCCCCCCCC-
Q 020242           15 CLFSFFFFTFSVFNFAAG------NHDVTRVTQSSFNACNTTSPL-SRTTNSP---ASVTLTASGPHYFICSFPGHCLG-   83 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~------~H~V~~V~~~~y~~C~~~~~~-~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~~-   83 (329)
                      ...++.+||.|.|...+.      .|++..-.   +       .+ .....|.   ..++.+++|.|||+|+.  +|.. 
T Consensus       558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---l-------GIK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~  625 (638)
T 3sbq_A          558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---H-------GVSMEISPQQTSSITFVADKPGLHWYYCSW--FCHAL  625 (638)
T ss_dssp             CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---T-------TEEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTT
T ss_pred             CEEEEecCceeEEEEecCCcCCCceeeeEecC---C-------CceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCC
Confidence            345789999999988752      46653311   1       11 1123343   35778999999999997  5654 


Q ss_pred             --CCeEEEEeec
Q 020242           84 --GQKLAINVSA   93 (329)
Q Consensus        84 --GmKl~I~V~~   93 (329)
                        +|+..|.|..
T Consensus       626 Hs~M~G~ViVEP  637 (638)
T 3sbq_A          626 HMEMVGRMMVEP  637 (638)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             cccceEEEEEec
Confidence              4999999863

>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}

Probab=85.20  E-value=14  Score=33.96  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEecCCCCC
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVTGGSST  270 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~  270 (329)
                      +.+|.+.|-|-+..|=.+||...+.|......
T Consensus       260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~  291 (299)
T 3t9w_A          260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT  291 (299)
T ss_dssp             TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred             CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence            35899999999999999999999999876653

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=82.84  E-value=1.8  Score=37.34  Aligned_cols=68  Identities=15%  Similarity=0.038  Sum_probs=43.8

Q ss_pred             CCCceeeCCEEEEEEcCC--CCcEEEeCcccccCCCCCCCCc-ccCCCC---cEEEecccCceEEEcCC-CCCCCCCCeE
Q 020242           15 CLFSFFFFTFSVFNFAAG--NHDVTRVTQSSFNACNTTSPLS-RTTNSP---ASVTLTASGPHYFICSF-PGHCLGGQKL   87 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~-~~~~G~---~~v~L~~~G~~yFiCs~-~~HC~~GmKl   87 (329)
                      ....+.+|+.+.|...+.  .|+... .  ++       .+. ....|.   ..++.+++|.||++|+. -|+--.+|++
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~I-P--~l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g  162 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHV-E--GT-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG  162 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEE-T--TS-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEE-C--CC-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence            446899999999998753  344322 1  11       111 112343   35788999999999996 2333356999


Q ss_pred             EEEee
Q 020242           88 AINVS   92 (329)
Q Consensus        88 ~I~V~   92 (329)
                      .|.|.
T Consensus       163 ~V~V~  167 (168)
T 3s8f_B          163 TIVVK  167 (168)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99985

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=80.26  E-value=1.1  Score=41.92  Aligned_cols=78  Identities=14%  Similarity=0.112  Sum_probs=49.1

Q ss_pred             CCCeeeecCEEEEeeCCC-----CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCC-----CC
Q 020242          188 RNNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPG-----HC  254 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~-----HC  254 (329)
                      ..++++.||.|++++.+.     .|.+..-.....+.-   ..+.....|.   ..|+++++|++||-|...+     |=
T Consensus        64 P~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~  140 (333)
T 1mzy_A           64 PLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV  140 (333)
T ss_dssp             CEEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHH
T ss_pred             CcEEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhh
Confidence            346889999999988653     366653211111100   0111233332   3577789999999998864     66


Q ss_pred             CCCCeEEEEecCCC
Q 020242          255 SAGQKLAVNVTGGS  268 (329)
Q Consensus       255 ~~GmKl~I~V~~~~  268 (329)
                      ..||...|.|....
T Consensus       141 ~~Gl~G~~iV~~~~  154 (333)
T 1mzy_A          141 VSGMAGCIMVLPRD  154 (333)
T ss_dssp             HTTCEEEEEEECTT
T ss_pred             hCCCEEEEEEccCc
Confidence            78999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	2e-40
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	2e-24
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	1e-38
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	7e-22
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	2e-35
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	3e-19
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	3e-34
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	2e-24

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  134 bits (339), Expect = 2e-40
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 222
           A +VVGG+ GWT         ++W +   F  GDIL+F+Y   +H+VV V +  + +CN+
Sbjct: 1   AVYVVGGSGGWTFN------TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54

Query: 223 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
            +     T+   +I L   G+ YF C FPGHC +G K+AVN 
Sbjct: 55  PAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVNA 95

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 93.0 bits (231), Expect = 2e-24
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 26 VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
          +FN+    H+V  V Q  F+ CNT +     T+    + L   G  YFIC+FPGHC  G 
Sbjct: 31 LFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGM 89

Query: 86 KLAINV 91
          K+A+N 
Sbjct: 90 KIAVNA 95

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score =  130 bits (328), Expect = 1e-38
 Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNS 222
             H VG + GWT        Y  WA +N F VGD L+F+Y  + H+V++V +  + SCNS
Sbjct: 3   TVHKVGDSTGWTTLVPYD--YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 223 SSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
           SS  +  T+    I L   G  YF C  PGHC  GQK+ + V
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score = 86.6 bits (214), Expect = 7e-22
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 26  VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
           +FN+    H+V +V Q  F +CN++SP +  T+   S+ L   G  YF+C  PGHC  GQ
Sbjct: 37  LFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQ 96

Query: 86  KLAINV 91
           K+ I V
Sbjct: 97  KVEIKV 102

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  122 bits (307), Expect = 2e-35
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCN 221
             H+VG   GW+VP + +  Y  WA    F VGD L F++PA  H+V E+ TK ++D+CN
Sbjct: 4   TVHIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62

Query: 222 SSSTISK-STNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS 268
             ++ +      P    L   G HYF CT   HCS GQKL++NV   +
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAAN 110

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 79.6 bits (196), Expect = 3e-19
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 26  VFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLG 83
            FNF A  H+V  + T+ SF+ACN  +  +    + P    L   G HYF+C+   HC  
Sbjct: 39  QFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSN 98

Query: 84  GQKLAINVSA 93
           GQKL+INV A
Sbjct: 99  GQKLSINVVA 108

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  118 bits (298), Expect = 3e-34
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 171 LGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKST 230
           +GW+          N AR  +F  GD+LVF Y    H+VV V    Y SC++       +
Sbjct: 5   IGWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYS 57

Query: 231 NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNV 264
           +   RI L   G++YF C+FPGHC  G K+A+N 
Sbjct: 58  SGQDRIKLTR-GQNYFICSFPGHCGGGMKIAINA 90

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 93.0 bits (231), Expect = 2e-24
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 26 VFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQ 85
          VF +  G H+V  V    + +C+        ++    + LT  G +YFICSFPGHC GG 
Sbjct: 26 VFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYFICSFPGHCGGGM 84

Query: 86 KLAINV 91
          K+AIN 
Sbjct: 85 KIAINA 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.98
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.97
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.96
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	99.96
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	99.95
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	99.94
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.9
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.85
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.8
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.77
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.74
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.66
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.65
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.6
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.59
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.59
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.59
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.52
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.51
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.51
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.49
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.47
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.46
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.43
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.42
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.42
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.4
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.38
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.37
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.35
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.3
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.19
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.17
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.16
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.08
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	97.93
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	97.93
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	97.75
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.56
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.41
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.37
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.34
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	97.13
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.0
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.0
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	97.0
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	96.75
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	96.44
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	96.3
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	95.95
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	95.89
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	95.81
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	95.66
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	95.59
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	95.02
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	94.81
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	94.67
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	94.47
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	94.01
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	93.69
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	93.64
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	93.14
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	93.1
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	92.67
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	92.31
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	92.11
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	91.31
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	90.65
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	90.42
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	90.25
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	87.68
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	85.81
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	85.68
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	85.22
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	85.09
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	83.27
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	82.39
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	80.92

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=9.5e-36  Score=237.71  Aligned_cols=95  Identities=40%  Similarity=0.869  Sum_probs=91.5

Q ss_pred             EEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCc
Q 020242          164 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGE  243 (329)
Q Consensus       164 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~  243 (329)
                      +|+|||+.||++      +|+.||++++|++||+|+|+|+++.|+|+||+|++|++|+.++++..+++|++.|+|++ |+
T Consensus         2 ~y~VGg~~GW~~------~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~   74 (96)
T d2cbpa_           2 VYVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQ   74 (96)
T ss_dssp             EEETTGGGCSCS------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EE
T ss_pred             EEEcCCCCCCCc------CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CC
Confidence            799999999986      49999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             EEEEcCCCCCCCCCCeEEEEec
Q 020242          244 HYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       244 ~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +||||+.++||++||||+|+|+
T Consensus        75 ~YFic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          75 SYFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEEECCSTTTGGGTCEEEEEEC
T ss_pred             CEEEeCCCCcCcCCCEEEEEEC
Confidence            9999999999999999999985

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=1.5e-35  Score=240.08  Aligned_cols=102  Identities=40%  Similarity=0.819  Sum_probs=97.3

Q ss_pred             ceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCC
Q 020242          162 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTA  241 (329)
Q Consensus       162 ~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~  241 (329)
                      +++|+|||+.||+++.+  .+|++|+++++|+|||+|+|+|..+.|+|+||++++|++|+..+++..+++|.+.|+|+++
T Consensus         2 at~~~VGg~~gW~~~~~--~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~   79 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (104)
T ss_dssp             CCEEETTGGGCSCSSSC--CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CcEEEeCCcCccCcCCC--cCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecC
Confidence            67999999999998653  4699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCCCCCCCCeEEEEec
Q 020242          242 GEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       242 G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      |++||||++++||++||||+|+|.
T Consensus        80 g~~yF~C~~~~HC~~Gmkl~I~V~  103 (104)
T d1ws8a_          80 GTFYFLCGIPGHCQLGQKVEIKVD  103 (104)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred             ccEEEECCCcchhhCCCEEEEEEC
Confidence            999999999999999999999996

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.98  E-value=6.7e-34  Score=232.15  Aligned_cols=106  Identities=42%  Similarity=0.805  Sum_probs=96.0

Q ss_pred             CceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEE-ccccccCCCCCCCcccCCC-CCcEEEe
Q 020242          161 QPATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEV-TKAAYDSCNSSSTISKSTN-PPTRITL  238 (329)
Q Consensus       161 ~~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V-~~~~y~~C~~~~~i~~~~~-G~~~v~L  238 (329)
                      ++++|+|||..||+++.+ ..+|++|+++++|+|||+|+|+|+.+.|+|+|| ++++|++|+..+++..+.+ +.+.++|
T Consensus         2 ~at~~~VGg~~gW~~~~~-~~~Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l   80 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (110)
T ss_dssp             CCCEEETTGGGCSSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             cceEEEeCCCCCcccCCC-cchhhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEe
Confidence            468999999999999865 346999999999999999999999999999999 6999999999998876554 4567899


Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVTGG  267 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~  267 (329)
                      +++|++||||++++||++||||+|+|+++
T Consensus        81 ~~~G~~yF~C~~~~HC~~Gmk~~I~V~~a  109 (110)
T d1jera_          81 DELGMHYFVCTVGTHCSNGQKLSINVVAA  109 (110)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECC
T ss_pred             cCCccEEEECCCcChhhcCCEEEEEEecC
Confidence            99999999999999999999999999975

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.97  E-value=5.2e-32  Score=215.89  Aligned_cols=90  Identities=30%  Similarity=0.526  Sum_probs=85.9

Q ss_pred             CccccCCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCC
Q 020242            2 DRAELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHC   81 (329)
Q Consensus         2 ~~~~~~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC   81 (329)
                      |..+|..+|+.|+++++|++||+|+|+|.++.|+|+||+|++|++|+.++++..+++|++.|+|++ |++||||++++||
T Consensus         7 g~~GW~~~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~-G~~YFic~~~~hC   85 (96)
T d2cbpa_           7 GSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPK-GQSYFICNFPGHC   85 (96)
T ss_dssp             GGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCS-EEEEEECCSTTTG
T ss_pred             CCCCCCcCHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCC-CCCEEEeCCCCcC
Confidence            456789999999999999999999999999999999999999999999999999999999999986 9999999999999


Q ss_pred             CCCCeEEEEee
Q 020242           82 LGGQKLAINVS   92 (329)
Q Consensus        82 ~~GmKl~I~V~   92 (329)
                      ++||||+|+|+
T Consensus        86 ~~G~Kl~V~Vl   96 (96)
T d2cbpa_          86 QSGMKIAVNAL   96 (96)
T ss_dssp             GGTCEEEEEEC
T ss_pred             cCCCEEEEEEC
Confidence            99999999985

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=8.2e-31  Score=207.16  Aligned_cols=90  Identities=39%  Similarity=0.792  Sum_probs=84.3

Q ss_pred             EEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCc
Q 020242          164 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGE  243 (329)
Q Consensus       164 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~  243 (329)
                      .|.|    ||++       |.+||++++|+|||+|+|+|.++.|+|+||++++|+.|+..+++..+++|++.|+|++ |+
T Consensus         2 ~y~v----GW~~-------~~~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~-g~   69 (91)
T d1f56a_           2 VYNI----GWSF-------NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQ   69 (91)
T ss_dssp             EEEE----ECSS-------SCBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCS-EE
T ss_pred             EEcc----CCcc-------ccccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeCC-CC
Confidence            4667    5985       6779999999999999999999999999999999999999999999999999999975 99


Q ss_pred             EEEEcCCCCCCCCCCeEEEEec
Q 020242          244 HYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       244 ~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +||||++++||++||||+|+|.
T Consensus        70 ~yfic~~~~HC~~Gmkl~I~V~   91 (91)
T d1f56a_          70 NYFICSFPGHCGGGMKIAINAK   91 (91)
T ss_dssp             EEEECCSTTTTTTTCEEEEEEC
T ss_pred             eEEEeCCCCcCccCCEEEEEEC
Confidence            9999999999999999999985

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=99.96  E-value=4.1e-30  Score=207.78  Aligned_cols=86  Identities=34%  Similarity=0.608  Sum_probs=83.3

Q ss_pred             CCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCe
Q 020242            7 ISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK   86 (329)
Q Consensus         7 ~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmK   86 (329)
                      ..||+.|+++++|++||+|+|+|..++|+|+||++++|++|+..+++..+++|.+.|+|+++|++||||++++||++|||
T Consensus        18 ~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~g~~yF~C~~~~HC~~Gmk   97 (104)
T d1ws8a_          18 PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQK   97 (104)
T ss_dssp             CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSEEEEEECCSTTTTTTTCE
T ss_pred             CcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecCccEEEECCCcchhhCCCE
Confidence            56899999999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             EEEEee
Q 020242           87 LAINVS   92 (329)
Q Consensus        87 l~I~V~   92 (329)
                      |.|+|.
T Consensus        98 l~I~V~  103 (104)
T d1ws8a_          98 VEIKVD  103 (104)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999996

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.95  E-value=2.9e-29  Score=198.19  Aligned_cols=86  Identities=33%  Similarity=0.508  Sum_probs=79.8

Q ss_pred             ccCCChhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCC
Q 020242            5 ELISDIDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGG   84 (329)
Q Consensus         5 ~~~~~y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~G   84 (329)
                      +|.. |.+|+++++|+|||+|+|+|.+++|+|+||++++|+.|+..+++..+++|++.|+|+ +|++||||++++||++|
T Consensus         6 GW~~-~~~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~-~g~~yfic~~~~HC~~G   83 (91)
T d1f56a_           6 GWSF-NVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYFICSFPGHCGGG   83 (91)
T ss_dssp             ECSS-SCBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEEEECCSTTTTTTT
T ss_pred             CCcc-ccccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeC-CCCeEEEeCCCCcCccC
Confidence            4544 445999999999999999999999999999999999999999999999999999997 59999999999999999


Q ss_pred             CeEEEEee
Q 020242           85 QKLAINVS   92 (329)
Q Consensus        85 mKl~I~V~   92 (329)
                      |||+|+|.
T Consensus        84 mkl~I~V~   91 (91)
T d1f56a_          84 MKIAINAK   91 (91)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEEC
Confidence            99999984

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=99.94  E-value=7.9e-28  Score=195.86  Aligned_cols=85  Identities=35%  Similarity=0.555  Sum_probs=78.5

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCCCcEEEe-CcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRV-TQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V-~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      |++|+++++|++||+|+|+|..++|+|+|| ++++|++|+..+++....+| ...++|+++|++||||++++||++||||
T Consensus        23 Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l~~~G~~yF~C~~~~HC~~Gmk~  102 (110)
T d1jera_          23 YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKL  102 (110)
T ss_dssp             HHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECCSSEEEEEECCSTTTGGGTCEE
T ss_pred             hhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEecCCccEEEECCCcChhhcCCEE
Confidence            999999999999999999999999999999 69999999999988765554 5678999999999999999999999999


Q ss_pred             EEEeecC
Q 020242           88 AINVSAR   94 (329)
Q Consensus        88 ~I~V~~~   94 (329)
                      +|+|.++
T Consensus       103 ~I~V~~a  109 (110)
T d1jera_         103 SINVVAA  109 (110)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999864

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.90  E-value=9e-10  Score=85.44  Aligned_cols=87  Identities=20%  Similarity=0.310  Sum_probs=56.8

Q ss_pred             EEEEeccCC-cccCCCCCcCcccccCCCeeeecCEEEEeeCCCC-ceEEEEccccccCCCCCCC---------cccCCCC
Q 020242          164 THVVGGALG-WTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNSSST---------ISKSTNP  232 (329)
Q Consensus       164 ~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-h~V~~V~~~~y~~C~~~~~---------i~~~~~G  232 (329)
                      +++||.+.| ..        |..  +.+++++||+|+|.+..+. |++... +.  +.+.....         .......
T Consensus         2 eV~vg~~~g~~~--------F~P--~~i~v~~GdtV~f~n~~~~~h~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~   68 (99)
T d1bypa_           2 EVLLGSSDGGLA--------FVP--SDLSIASGEKITFKNNAGFPHNDLFD-KK--EVPAGVDVTKISMPEEDLLNAPGE   68 (99)
T ss_dssp             EEEESCTTSCCS--------EES--SEEEECTTEEEEEEECSSCCBCCEEC-TT--SSCTTCCHHHHSCCTTCCBCSTTC
T ss_pred             EEEEEecCCceE--------EcC--CEEEECCCCEEEEEECCCCceeEEEe-cC--CCCCccccccCcccccccccCCCc
Confidence            577886543 33        433  6789999999999987654 555532 21  11111110         0001112


Q ss_pred             CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          233 PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       233 ~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ...++++++|+|||+|..  ||+.||+..|.|.
T Consensus        69 ~~~~tf~~~G~y~y~C~~--H~~~GM~G~I~V~   99 (99)
T d1bypa_          69 EYSVTLTEKGTYKFYCAP--HAGAGMVGKVTVN   99 (99)
T ss_dssp             EEEEEECSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             eEEEEecCCceEEEEECc--CCCCCCEEEEEEC
Confidence            357889999999999986  9999999999984

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=98.85  E-value=2.3e-09  Score=83.04  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=58.8

Q ss_pred             ceEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCC-ceEEEEccccccCCCCCCCc---c--cCC-CCCc
Q 020242          162 PATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNSSSTI---S--KST-NPPT  234 (329)
Q Consensus       162 ~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-h~V~~V~~~~y~~C~~~~~i---~--~~~-~G~~  234 (329)
                      ++++.||.+.|       ...|..  +.+++++||+|.|.+..+. |+++.....  ..+......   .  ... ....
T Consensus         1 a~~V~vg~~~g-------~~~F~P--~~i~i~~GdtV~f~n~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   69 (98)
T d1iuza_           1 AQIVKLGGDDG-------SLAFVP--SKISVAAGEAIEFVNNAGFPHNIVFDEDA--VPAGVDADAISYDDYLNSKGETV   69 (98)
T ss_dssp             CEEEEESCTTS-------CCSEES--SEEEECTTCEEEEEECSSCCEEEEECTTS--SCTTCCHHHHCEEEEECSTTCEE
T ss_pred             CeEEEEecCCC-------cEEEeC--CEEEECCCCEEEEEECCCCcccEEEeCCC--cccccccccccccCcccCCCcEE
Confidence            35678887653       122444  6789999999999886554 666642211  111111100   0  111 1234


Q ss_pred             EEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          235 RITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       235 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      .++++++|+|||+|..  ||..||+..|+|.
T Consensus        70 ~~~f~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d1iuza_          70 VRKLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             EEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EEecCCCceEEEEeCC--CccCCCeEEEEEC
Confidence            6889999999999985  9999999999984

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.80  E-value=3.6e-09  Score=81.67  Aligned_cols=90  Identities=18%  Similarity=0.230  Sum_probs=57.6

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCC-Cc-----ccCC-CCCcE
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSS-TI-----SKST-NPPTR  235 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~-~i-----~~~~-~G~~~  235 (329)
                      .+++||.+.|       ...|+.  +.+++++||+|.|.+....|..+.....  ..|.... ..     .... .....
T Consensus         2 ~TV~vg~~~g-------~~~F~P--~~i~v~~GdtV~f~n~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~   70 (98)
T d2plta_           2 ATVKLGADSG-------ALEFVP--KTLTIKSGETVNFVNNAGFPHNIVFDED--AIPSGVNADAISRDDYLNAPGETYS   70 (98)
T ss_dssp             EEEEESCTTC-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECGG--GSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred             eEEEEeeCCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeEEEecC--CccccccCCcccccccccCCCceEE
Confidence            4677875532       123444  6799999999999887655444433222  1222211 00     0111 22357


Q ss_pred             EEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          236 ITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       236 v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++++++|.|||+|..  ||+.||+..|.|.
T Consensus        71 ~tf~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d2plta_          71 VKLTAAGEYGYYCEP--HQGAGMVGKIIVQ   98 (98)
T ss_dssp             EECCSCEEEEEECGG--GGGGTCEEEEEEC
T ss_pred             EEecCCceEEEEeCc--CCCCCCEEEEEEC
Confidence            888999999999975  9999999999984

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.77  E-value=3.4e-09  Score=82.31  Aligned_cols=91  Identities=22%  Similarity=0.334  Sum_probs=57.6

Q ss_pred             EEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCC-ceEEEEccccccCCCC---------CCCcccCCCCC
Q 020242          164 THVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNS---------SSTISKSTNPP  233 (329)
Q Consensus       164 ~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-h~V~~V~~~~y~~C~~---------~~~i~~~~~G~  233 (329)
                      ++.||.+.|       ...|+.  +.+++++||+|+|.+..+. |+++......-+....         .+.........
T Consensus         2 ~V~vg~~~g-------~~~F~P--~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (102)
T d1kdja_           2 KVEVGDEVG-------NFKFYP--DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPS   72 (102)
T ss_dssp             EEEESCTTC-------CCCEES--SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCE
T ss_pred             EEEEeecCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCccE
Confidence            467776543       122343  6789999999999987654 7766543221111110         00011111223


Q ss_pred             cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          234 TRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       234 ~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..++++++|.|||+|..  ||+.||+..|+|.
T Consensus        73 ~~~~f~~~G~y~Y~C~~--H~~~GM~G~I~Ve  102 (102)
T d1kdja_          73 FKAKVSTPGTYTFYCTP--HKSANMKGTLTVK  102 (102)
T ss_dssp             EEECCCSCEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEeeCCCceEEEEecC--CcccCCeEEEEEC
Confidence            46788899999999985  9999999999984

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.74  E-value=9.9e-09  Score=79.98  Aligned_cols=92  Identities=23%  Similarity=0.243  Sum_probs=55.0

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCCC-ceEEEEccccccCCCCCC------CcccCCCC-Cc
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYDSCNSSS------TISKSTNP-PT  234 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-h~V~~V~~~~y~~C~~~~------~i~~~~~G-~~  234 (329)
                      .++.||.+.|       ...|+.  +.+++++||+|.|.+..+. |++...... ........      .......+ ..
T Consensus         3 ~tV~v~~~~g-------~~~F~P--~~i~v~~GdtV~f~n~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   72 (105)
T d2cj3a1           3 YTVKLGSDKG-------LLVFEP--AKLTIKPGDTVEFLNNKVPPHNVVFDAAL-NPAKSADLAKSLSHKQLLMSPGQST   72 (105)
T ss_dssp             EEEEESCTTC-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECSSS-STTCCHHHHHHHCEEEEECSTTCEE
T ss_pred             EEEEEEeCCC-------ceEEeC--CEEEECCCCEEEEEECCCCceeeEeccCC-CCccccccCCcccccccccCCCcce
Confidence            3556665543       123444  6789999999999887655 555533222 11111100      00011111 23


Q ss_pred             EEEe---CCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 020242          235 RITL---GTAGEHYFFCTFPGHCSAGQKLAVNVTG  266 (329)
Q Consensus       235 ~v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~~  266 (329)
                      .+++   +++|+|||+|..  ||++||+..|.|.+
T Consensus        73 ~~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~V~g  105 (105)
T d2cj3a1          73 STTFPADAPAGEYTFYCEP--HRGAGMVGKITVAG  105 (105)
T ss_dssp             EEECCTTCCSEEEEEECTT--TGGGTCEEEEEECC
T ss_pred             EEEEEeccCCceEEEEeCC--CcCCCcEEEEEEeC
Confidence            4443   478999999986  99999999999963

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.66  E-value=2.3e-08  Score=80.88  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=54.7

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG  267 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~  267 (329)
                      +.+++++||+|.|.+....|++..+....  ..... ...........++++++|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GdtV~f~n~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vg~~   95 (123)
T d1adwa_          21 AFVRAEPGDVINFVPTDKSHNVEAIKEIL--PEGVE-SFKSKINESYTLTVTEPGLYGVKCTP--HFGMGMVGLVQVGDA   95 (123)
T ss_dssp             SEEEECTTEEEEEEESSSSCCCEECTTSC--CTTCC-CCBCCTTCCEEEEECSCEEEEEECGG--GGGGTCEEEEEESSS
T ss_pred             CEEEECCCCEEEEEeCCCCcceecccCcc--ccccc-cccccCCcceEEeccCCCeEEEEEcc--CCCCCCEEEEEECCC
Confidence            67899999999999998888777543211  01110 11111223468999999999999987  999999999999764


Q ss_pred             C
Q 020242          268 S  268 (329)
Q Consensus       268 ~  268 (329)
                      .
T Consensus        96 ~   96 (123)
T d1adwa_          96 P   96 (123)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.65  E-value=3.8e-08  Score=79.64  Aligned_cols=74  Identities=19%  Similarity=0.187  Sum_probs=56.0

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCccc-CC-CCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISK-ST-NPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~-~~-~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +..++++||+|.|.+..+.|+|..+.....+     +.... .. .....++++++|.|+|+|..  ||..||+..|.|.
T Consensus        21 ~~itI~~GDTV~f~n~~~~Hnv~~~~~~~~~-----~~~~~~~~~~~~~s~tF~~~G~y~Y~Ctp--H~~~GM~G~I~Vg   93 (120)
T d1paza_          21 AYIKANPGDTVTFIPVDKGHNVESIKDMIPE-----GAEKFKSKINENYVLTVTQPGAYLVKCTP--HYAMGMIALIAVG   93 (120)
T ss_dssp             SEEEECTTCEEEEEESSSSCCCEECTTCSCT-----TCCCCBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEES
T ss_pred             CEEEECCCCEEEEeeCCCcceEeeccccCcc-----cccccccccCceEEEEecCCCeEEEEEee--CCCCCCEEEEEEC
Confidence            5689999999999999888999865433222     11111 11 22468899999999999986  9999999999998


Q ss_pred             CCC
Q 020242          266 GGS  268 (329)
Q Consensus       266 ~~~  268 (329)
                      ...
T Consensus        94 ~~~   96 (120)
T d1paza_          94 DSP   96 (120)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            743

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.60  E-value=4.2e-08  Score=76.34  Aligned_cols=90  Identities=21%  Similarity=0.270  Sum_probs=57.8

Q ss_pred             EEEEeccC-CcccCCCCCcCcccccCCCeeeecCEEEEeeCCCC-ceEEEEcccccc-CC----CCCCCcccCCCCC-cE
Q 020242          164 THVVGGAL-GWTVPPNASVGYQNWARNNNFSVGDILVFDYPARV-HDVVEVTKAAYD-SC----NSSSTISKSTNPP-TR  235 (329)
Q Consensus       164 ~~~VGg~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~~-h~V~~V~~~~y~-~C----~~~~~i~~~~~G~-~~  235 (329)
                      +++||.+. +..        |..  +.+++++||+|+|.+..+. |+|+........ ..    ...........|. ..
T Consensus         2 ~V~~g~d~g~~~--------F~P--~~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~   71 (99)
T d1plca_           2 DVLLGADDGSLA--------FVP--SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE   71 (99)
T ss_dssp             EEEESCTTCCSC--------EES--SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred             EEEEEeCCCceE--------EeC--CEEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEE
Confidence            46777543 343        333  6789999999999886654 999854221100 00    0000001112232 47


Q ss_pred             EEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          236 ITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       236 v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++++++|.|+|+|.  .|+..||+..|.|.
T Consensus        72 ~tF~~~G~y~Y~C~--pH~~~GM~G~I~V~   99 (99)
T d1plca_          72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN   99 (99)
T ss_dssp             EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred             EecCCCceEEEEeC--CCcCCCcEEEEEEC
Confidence            78899999999996  49999999999984

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.59  E-value=5.6e-08  Score=74.78  Aligned_cols=90  Identities=23%  Similarity=0.273  Sum_probs=57.3

Q ss_pred             eEEEEeccCC-cccCCCCCcCcccccCCCeeeecCEEEEeeCCC-CceEEEEcc-c--cccCCCCCCCcccCCCCCcEEE
Q 020242          163 ATHVVGGALG-WTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTK-A--AYDSCNSSSTISKSTNPPTRIT  237 (329)
Q Consensus       163 ~~~~VGg~~G-W~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~h~V~~V~~-~--~y~~C~~~~~i~~~~~G~~~v~  237 (329)
                      .++.+|.+.+ -.        |..  +.+++++||+|.|.+... .|.+..... .  +.......+. ..-......++
T Consensus         3 ~~v~~g~~~~~~~--------F~P--~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t   71 (97)
T d2jxma1           3 VQIKMGTDKYAPL--------YEP--KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKL-AIAPGSFYSVT   71 (97)
T ss_dssp             EEEEEEETTTEEE--------EES--SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCC-CCSCSCCEEEE
T ss_pred             EEEEEccCCCceE--------EcC--CEEEECCCCEEEEEECCCcceeEEEecCCCcccccccccccc-ccCcceEEEEe
Confidence            4667776543 33        333  679999999999999764 444443211 1  1111111110 11112245789


Q ss_pred             eCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          238 LGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       238 L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ++++|.|||+|..  ||..||+..|+|.
T Consensus        72 f~~~G~y~Y~C~~--H~~~GM~G~I~Ve   97 (97)
T d2jxma1          72 LGTPGTYSFYCTP--HRGAGMVGTITVE   97 (97)
T ss_dssp             CCSCSEEEEECSS--TTTTTCEEEEEEC
T ss_pred             cCCCeEEEEEEcc--CCCCCCEEEEEEC
Confidence            9999999999975  9999999999984

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.59  E-value=3.2e-08  Score=76.98  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCCC-CceEEEEccccccCCCCCC-----CcccCCCCC-cE
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSS-----TISKSTNPP-TR  235 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~-----~i~~~~~G~-~~  235 (329)
                      .++.||.+.|       ...|+.  +.+++++||+|.|.+... .|+++.........+....     .......|. ..
T Consensus         3 ~tV~vg~~~g-------~~~F~P--~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   73 (105)
T d2q5ba1           3 FTVKMGADSG-------LLQFEP--ANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYE   73 (105)
T ss_dssp             EEEEESCTTS-------CSSEES--SEEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEEE
T ss_pred             EEEEEecCCC-------ceEEeC--CEEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceEE
Confidence            4667776543       123443  679999999999988644 5777654333222222111     011223333 23


Q ss_pred             EEe---CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          236 ITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       236 v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +.+   +++|.|||+|..  ||+.||+..|.|.
T Consensus        74 ~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          74 ITFSSDFPAGTYTYYCAP--HRGAGMVGKITVE  104 (105)
T ss_dssp             EEECTTSCSEEEEEECST--TGGGTCEEEEEEC
T ss_pred             EEEEeccCCceEEEEeCC--CCCCCCEEEEEEc
Confidence            333   367999999985  9999999999996

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.59  E-value=1.9e-08  Score=77.73  Aligned_cols=74  Identities=22%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             cCCCceeeCCEEEEEEcCCC-CcEEEeCcccccCCCCCCC------C--cccC-CCCcEEEecccCceEEEcCCCCCCCC
Q 020242           14 LCLFSFFFFTFSVFNFAAGN-HDVTRVTQSSFNACNTTSP------L--SRTT-NSPASVTLTASGPHYFICSFPGHCLG   83 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~-H~V~~V~~~~y~~C~~~~~------~--~~~~-~G~~~v~L~~~G~~yFiCs~~~HC~~   83 (329)
                      ...+++++||+|+|.+..+. |++. +.+..  .+.....      .  .... ....+++++++|.|||+|+.  ||+.
T Consensus        16 P~~i~v~~GdtV~f~n~~~~~h~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~y~C~~--H~~~   90 (99)
T d1bypa_          16 PSDLSIASGEKITFKNNAGFPHNDL-FDKKE--VPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAP--HAGA   90 (99)
T ss_dssp             SSEEEECTTEEEEEEECSSCCBCCE-ECTTS--SCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECGG--GTTT
T ss_pred             CCEEEECCCCEEEEEECCCCceeEE-EecCC--CCCccccccCcccccccccCCCceEEEEecCCceEEEEECc--CCCC
Confidence            55679999999999997554 5553 32221  1111110      0  0111 12247889999999999985  9999


Q ss_pred             CCeEEEEee
Q 020242           84 GQKLAINVS   92 (329)
Q Consensus        84 GmKl~I~V~   92 (329)
                      ||+..|.|.
T Consensus        91 GM~G~I~V~   99 (99)
T d1bypa_          91 GMVGKVTVN   99 (99)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            999999883

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=98.52  E-value=2.9e-08  Score=76.60  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=49.5

Q ss_pred             ccCCCceeeCCEEEEEEcCCC-CcEEEeCcccccCCCCCCCC---c--ccCCC-CcEEEecccCceEEEcCCCCCCCCCC
Q 020242           13 FLCLFSFFFFTFSVFNFAAGN-HDVTRVTQSSFNACNTTSPL---S--RTTNS-PASVTLTASGPHYFICSFPGHCLGGQ   85 (329)
Q Consensus        13 Wa~~~tf~vGD~LvF~y~~~~-H~V~~V~~~~y~~C~~~~~~---~--~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~Gm   85 (329)
                      =.+.+++.+||+|+|.+..+. |+++... . ...+......   .  ....+ ...++++++|.|||+|..  ||..||
T Consensus        16 ~P~~i~i~~GdtV~f~n~~~~~h~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~G~y~y~C~~--H~~~GM   91 (98)
T d1iuza_          16 VPSKISVAAGEAIEFVNNAGFPHNIVFDE-D-AVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEP--HAGAGM   91 (98)
T ss_dssp             ESSEEEECTTCEEEEEECSSCCEEEEECT-T-SSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECTT--TGGGTC
T ss_pred             eCCEEEECCCCEEEEEECCCCcccEEEeC-C-CcccccccccccccCcccCCCcEEEEecCCCceEEEEeCC--CccCCC
Confidence            345579999999999987554 6654322 1 1111111110   0  11112 246889999999999985  999999


Q ss_pred             eEEEEee
Q 020242           86 KLAINVS   92 (329)
Q Consensus        86 Kl~I~V~   92 (329)
                      +..|.|.
T Consensus        92 ~G~I~Ve   98 (98)
T d1iuza_          92 KMTITVQ   98 (98)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            9999984

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.51  E-value=8.8e-08  Score=77.44  Aligned_cols=74  Identities=16%  Similarity=0.067  Sum_probs=54.9

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCccc--CCCCcEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRT--TNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~--~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      .+..++.+||+|.|.+..+.|+|..+.....+     +.....  ......++++.+|.|+|+|+.  ||..||+..|.|
T Consensus        20 P~~itI~~GDTV~f~n~~~~Hnv~~~~~~~~~-----~~~~~~~~~~~~~s~tF~~~G~y~Y~Ctp--H~~~GM~G~I~V   92 (120)
T d1paza_          20 PAYIKANPGDTVTFIPVDKGHNVESIKDMIPE-----GAEKFKSKINENYVLTVTQPGAYLVKCTP--HYAMGMIALIAV   92 (120)
T ss_dssp             SSEEEECTTCEEEEEESSSSCCCEECTTCSCT-----TCCCCBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEE
T ss_pred             CCEEEECCCCEEEEeeCCCcceEeeccccCcc-----cccccccccCceEEEEecCCCeEEEEEee--CCCCCCEEEEEE
Confidence            34578999999999999888999665332222     111111  112357999999999999985  999999999999


Q ss_pred             ecC
Q 020242           92 SAR   94 (329)
Q Consensus        92 ~~~   94 (329)
                      ...
T Consensus        93 g~~   95 (120)
T d1paza_          93 GDS   95 (120)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            864

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.51  E-value=1.5e-07  Score=76.46  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG  267 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~  267 (329)
                      +..++++||+|.|.+....|++..+....-  ..... ..........++++++|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~itI~~GdTV~w~n~~~~~~~~~~~~~~p--~~~~~-~~~~~~~~~s~Tf~~~G~Y~Y~C~p--H~~~GM~G~IvVgd~   95 (124)
T d1bqka_          21 ASLKVAPGDTVTFIPTDKGHNVETIKGMIP--DGAEA-FKSKINENYKVTFTAPGVYGVKCTP--HYGMGMVGVVQVGDA   95 (124)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTCSC--TTCCC-CBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEESSS
T ss_pred             CEEEECCCCeEEEEECCCCcccccccccCC--Ccccc-ccccCCccEEEecCCCceEEEEecc--CcCCCCEEEEEECCC
Confidence            568999999999999887888775533211  11111 1111223468899999999999985  999999999999753

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.49  E-value=2.4e-07  Score=74.78  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             CCCeeeecCEEEEeeCCCCceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 020242          188 RNNNFSVGDILVFDYPARVHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGG  267 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~  267 (329)
                      +.+++++||+|.|.+..+.|.+..+.....+.   .............++++.+|.|+|+|..  ||..||+..|.|...
T Consensus        21 ~~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vgd~   95 (123)
T d1pmya_          21 ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDG---ADYVKTTVGQEAVVKFDKEGVYGFKCAP--HYMMGMVALVVVGDK   95 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTSSCTT---CCCCBCCTTSCEEEECCSCEEEEEECST--TTTTTCEEEEEESSC
T ss_pred             CEEEECCCCEEEEeeCCCCcccccccccCccc---ccccccccccccccccCCCceEEEEecc--CCCCCCEEEEEECCC
Confidence            67899999999999987777666543221110   0001111123468899999999999976  999999999999654


Q ss_pred             C
Q 020242          268 S  268 (329)
Q Consensus       268 ~  268 (329)
                      .
T Consensus        96 ~   96 (123)
T d1pmya_          96 R   96 (123)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.47  E-value=6.9e-08  Score=74.79  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             eEEEEeccCCcccCCCCCcCcccccCCCeeeecCEEEEeeCC-CCceEEEEccc-ccc---CCCCCCCcccCCCC-CcEE
Q 020242          163 ATHVVGGALGWTVPPNASVGYQNWARNNNFSVGDILVFDYPA-RVHDVVEVTKA-AYD---SCNSSSTISKSTNP-PTRI  236 (329)
Q Consensus       163 ~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~LvF~y~~-~~h~V~~V~~~-~y~---~C~~~~~i~~~~~G-~~~v  236 (329)
                      .++.||.+.|       ...|+.  +.+++++||+|.|.+.. ..|+|+..... ..+   .....+  .....| ...+
T Consensus         3 ~tv~~g~~~~-------~~~F~P--~~i~v~~GdtV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~--~~~~~g~t~~~   71 (98)
T d1pcsa_           3 ATVKMGSDSG-------ALVFEP--STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKG--LLFAAGESFTS   71 (98)
T ss_dssp             EEEEESCTTS-------CSSEES--SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEE--EECSTTCEEEE
T ss_pred             eEEEeeeCCC-------ceEEeC--CEEEECCCCEEEEeECCCCccceEEeccccCCCccccccccc--cccCCCcEEEE
Confidence            4667776543       123444  67899999999998764 56999854211 000   000000  112333 3578


Q ss_pred             EeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          237 TLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       237 ~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +++++|.|||+|..  |++.||+..|.|.
T Consensus        72 tf~~~G~y~Y~C~~--H~~~gM~G~I~Ve   98 (98)
T d1pcsa_          72 TFTEPGTYTYYCEP--HRGAGMVGKVVVE   98 (98)
T ss_dssp             ECCSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             eccCCceEEEEecc--CCCCCCEEEEEEC
Confidence            89999999999975  9999999999984

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.46  E-value=3.9e-08  Score=75.63  Aligned_cols=79  Identities=18%  Similarity=0.066  Sum_probs=51.5

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCC-C----c-ccCCC-CcEEEecccCceEEEcCCCCCCC
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSP-L----S-RTTNS-PASVTLTASGPHYFICSFPGHCL   82 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~-~----~-~~~~G-~~~v~L~~~G~~yFiCs~~~HC~   82 (329)
                      +..=.+.+++.+||+|.|.+....|..+.....  ..|..... .    . ....+ ..+++++++|.+||+|..  ||+
T Consensus        13 ~~F~P~~i~v~~GdtV~f~n~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~tf~~~G~y~y~C~~--H~~   88 (98)
T d2plta_          13 LEFVPKTLTIKSGETVNFVNNAGFPHNIVFDED--AIPSGVNADAISRDDYLNAPGETYSVKLTAAGEYGYYCEP--HQG   88 (98)
T ss_dssp             SSEESSEEEECTTCEEEEEECSSCCEEEEECGG--GSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECGG--GGG
T ss_pred             eEEeCCEEEECCCCEEEEEECCCCceeEEEecC--CccccccCCcccccccccCCCceEEEEecCCceEEEEeCc--CCC
Confidence            333355679999999999887555544443322  12222111 0    0 11112 246888999999999984  999


Q ss_pred             CCCeEEEEee
Q 020242           83 GGQKLAINVS   92 (329)
Q Consensus        83 ~GmKl~I~V~   92 (329)
                      .||+..|.|.
T Consensus        89 ~GM~G~I~Ve   98 (98)
T d2plta_          89 AGMVGKIIVQ   98 (98)
T ss_dssp             GTCEEEEEEC
T ss_pred             CCCEEEEEEC
Confidence            9999999984

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.43  E-value=9.9e-08  Score=74.11  Aligned_cols=81  Identities=14%  Similarity=-0.030  Sum_probs=49.0

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCC------CCcccCCC-CcEEEe---cccCceEEEcCCCC
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTS------PLSRTTNS-PASVTL---TASGPHYFICSFPG   79 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~------~~~~~~~G-~~~v~L---~~~G~~yFiCs~~~   79 (329)
                      |..=.+..++++||+|.|.+..+.|..+.+............      .......+ ...+++   +++|+|||+|..  
T Consensus        14 ~~F~P~~i~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~y~y~C~~--   91 (105)
T d2cj3a1          14 LVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEP--   91 (105)
T ss_dssp             SSEESSEEEECTTCEEEEEECSSCCEEEEECSSSSTTCCHHHHHHHCEEEEECSTTCEEEEECCTTCCSEEEEEECTT--
T ss_pred             eEEeCCEEEECCCCEEEEEECCCCceeeEeccCCCCccccccCCcccccccccCCCcceEEEEEeccCCceEEEEeCC--
Confidence            333445678999999999987655444333322222111100      00111122 234444   468999999985  


Q ss_pred             CCCCCCeEEEEee
Q 020242           80 HCLGGQKLAINVS   92 (329)
Q Consensus        80 HC~~GmKl~I~V~   92 (329)
                      ||+.||+..|.|.
T Consensus        92 H~~~GM~G~I~V~  104 (105)
T d2cj3a1          92 HRGAGMVGKITVA  104 (105)
T ss_dssp             TGGGTCEEEEEEC
T ss_pred             CcCCCcEEEEEEe
Confidence            9999999999996

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.42  E-value=1.4e-07  Score=76.19  Aligned_cols=76  Identities=14%  Similarity=0.075  Sum_probs=53.7

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEEEeec
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA   93 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V~~   93 (329)
                      .+.+++.+||+|.|.+....|+++.+... .. .... ...........++++.+|.|+|+|..  ||..||+..|.|..
T Consensus        20 P~~itI~~GdtV~f~n~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vg~   94 (123)
T d1adwa_          20 PAFVRAEPGDVINFVPTDKSHNVEAIKEI-LP-EGVE-SFKSKINESYTLTVTEPGLYGVKCTP--HFGMGMVGLVQVGD   94 (123)
T ss_dssp             SSEEEECTTEEEEEEESSSSCCCEECTTS-CC-TTCC-CCBCCTTCCEEEEECSCEEEEEECGG--GGGGTCEEEEEESS
T ss_pred             CCEEEECCCCEEEEEeCCCCcceecccCc-cc-cccc-cccccCCcceEEeccCCCeEEEEEcc--CCCCCCEEEEEECC
Confidence            34578999999999999888887654321 11 1110 11111222357999999999999987  99999999999975


Q ss_pred             C
Q 020242           94 R   94 (329)
Q Consensus        94 ~   94 (329)
                      .
T Consensus        95 ~   95 (123)
T d1adwa_          95 A   95 (123)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.42  E-value=5.8e-08  Score=75.10  Aligned_cols=78  Identities=12%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             ccCCCceeeCCEEEEEEcCCC-CcEEEeCcccccCCCC---------CCCCcccCCCCcEEEecccCceEEEcCCCCCCC
Q 020242           13 FLCLFSFFFFTFSVFNFAAGN-HDVTRVTQSSFNACNT---------TSPLSRTTNSPASVTLTASGPHYFICSFPGHCL   82 (329)
Q Consensus        13 Wa~~~tf~vGD~LvF~y~~~~-H~V~~V~~~~y~~C~~---------~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~   82 (329)
                      =.+..++++||+|+|.+..+. |+++.......+....         .+...........++++++|.|||+|+.  ||+
T Consensus        15 ~P~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~G~y~Y~C~~--H~~   92 (102)
T d1kdja_          15 YPDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCTP--HKS   92 (102)
T ss_dssp             ESSEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEECST--TGG
T ss_pred             eCCEEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCccEEEEeeCCCceEEEEecC--Ccc
Confidence            345679999999999997654 7665542221111100         0000111112246888999999999985  999


Q ss_pred             CCCeEEEEee
Q 020242           83 GGQKLAINVS   92 (329)
Q Consensus        83 ~GmKl~I~V~   92 (329)
                      .||+..|.|.
T Consensus        93 ~GM~G~I~Ve  102 (102)
T d1kdja_          93 ANMKGTLTVK  102 (102)
T ss_dssp             GTCEEEEEEC
T ss_pred             cCCeEEEEEC
Confidence            9999999984

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.40  E-value=2.1e-07  Score=75.58  Aligned_cols=76  Identities=17%  Similarity=0.065  Sum_probs=54.2

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEEEeec
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA   93 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V~~   93 (329)
                      .+..++.+||+|.|.+....|++..+....-  ..... ..........++++++|.|+|+|+.  ||..||+..|.|..
T Consensus        20 P~~itI~~GdTV~w~n~~~~~~~~~~~~~~p--~~~~~-~~~~~~~~~s~Tf~~~G~Y~Y~C~p--H~~~GM~G~IvVgd   94 (124)
T d1bqka_          20 PASLKVAPGDTVTFIPTDKGHNVETIKGMIP--DGAEA-FKSKINENYKVTFTAPGVYGVKCTP--HYGMGMVGVVQVGD   94 (124)
T ss_dssp             SSEEEECTTCEEEEECSSSSCCCEECTTCSC--TTCCC-CBCCTTCCEEEECCSCEEEEEECTT--TGGGTCEEEEEESS
T ss_pred             CCEEEECCCCeEEEEECCCCcccccccccCC--Ccccc-ccccCCccEEEecCCCceEEEEecc--CcCCCCEEEEEECC
Confidence            4457999999999999887888866532211  11111 1111223357899999999999985  99999999999975


Q ss_pred             C
Q 020242           94 R   94 (329)
Q Consensus        94 ~   94 (329)
                      .
T Consensus        95 ~   95 (124)
T d1bqka_          95 A   95 (124)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.38  E-value=4.2e-07  Score=73.32  Aligned_cols=77  Identities=17%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             cCCCceeeCCEEEEEEcCCCCcEEEeCcccccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEEEeec
Q 020242           14 LCLFSFFFFTFSVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSA   93 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V~~   93 (329)
                      .+..++.+||+|.|.+..+.|+++.+.....+.   .............++++.+|.|+|+|..  ||..||+..|.|..
T Consensus        20 P~~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vgd   94 (123)
T d1pmya_          20 PALVRLKPGDSIKFLPTDKGHNVETIKGMAPDG---ADYVKTTVGQEAVVKFDKEGVYGFKCAP--HYMMGMVALVVVGD   94 (123)
T ss_dssp             SSEEEECTTCEEEEECSSSSCCCEECTTSSCTT---CCCCBCCTTSCEEEECCSCEEEEEECST--TTTTTCEEEEEESS
T ss_pred             CCEEEECCCCEEEEeeCCCCcccccccccCccc---ccccccccccccccccCCCceEEEEecc--CCCCCCEEEEEECC
Confidence            345789999999999987777776543221111   0111111122357999999999999986  99999999999975


Q ss_pred             CC
Q 020242           94 RG   95 (329)
Q Consensus        94 ~~   95 (329)
                      ..
T Consensus        95 ~~   96 (123)
T d1pmya_          95 KR   96 (123)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.37  E-value=1.7e-07  Score=71.95  Aligned_cols=76  Identities=25%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             cCCCceeeCCEEEEEEcCC-CCcEEEeCc-c--cccCCCCCCCCcccCCCCcEEEecccCceEEEcCCCCCCCCCCeEEE
Q 020242           14 LCLFSFFFFTFSVFNFAAG-NHDVTRVTQ-S--SFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAI   89 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~-~H~V~~V~~-~--~y~~C~~~~~~~~~~~G~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I   89 (329)
                      .+.+++++||+|.|.+..+ .|+++.... .  +.......... ........++++++|.|||+|+.  ||..||+..|
T Consensus        18 P~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~tf~~~G~y~Y~C~~--H~~~GM~G~I   94 (97)
T d2jxma1          18 PKALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKLA-IAPGSFYSVTLGTPGTYSFYCTP--HRGAGMVGTI   94 (97)
T ss_dssp             SSEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCCC-CSCSCCEEEECCSCSEEEEECSS--TTTTTCEEEE
T ss_pred             CCEEEECCCCEEEEEECCCcceeEEEecCCCccccccccccccc-cCcceEEEEecCCCeEEEEEEcc--CCCCCCEEEE
Confidence            4557999999999999754 444433211 1  11111111110 11112357899999999999985  9999999999


Q ss_pred             Eee
Q 020242           90 NVS   92 (329)
Q Consensus        90 ~V~   92 (329)
                      .|.
T Consensus        95 ~Ve   97 (97)
T d2jxma1          95 TVE   97 (97)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.35  E-value=5.4e-07  Score=73.49  Aligned_cols=78  Identities=22%  Similarity=0.389  Sum_probs=52.3

Q ss_pred             CCCeeeecCEEEEeeCCC-----CceEEEEccccc-------------c-----CCCCCCCcc---cCCCC---CcEEEe
Q 020242          188 RNNNFSVGDILVFDYPAR-----VHDVVEVTKAAY-------------D-----SCNSSSTIS---KSTNP---PTRITL  238 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y-------------~-----~C~~~~~i~---~~~~G---~~~v~L  238 (329)
                      ...+++.||+|.|.|.+.     .|+++.+...+-             +     .=+....+.   ....|   ...|+.
T Consensus        32 ~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~t~~~~pg~s~~i~f~~  111 (139)
T d1qhqa_          32 TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRT  111 (139)
T ss_dssp             SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEEC
T ss_pred             CeEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccCCCcccccccccccCCcceEEEEEec
Confidence            678999999999988543     499887642210             0     000011111   11122   235677


Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      .++|.|.|+|++++||+.||+..|.|.
T Consensus       112 ~~~G~y~f~Ct~pgH~~~GM~G~i~V~  138 (139)
T d1qhqa_         112 PAPGTYLYICTFPGHYLAGMKGTLTVT  138 (139)
T ss_dssp             CSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             CCCeEEEEEcCCcCcccccCeEEEEEc
Confidence            899999999999999999999999985

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.30  E-value=3e-07  Score=71.28  Aligned_cols=81  Identities=21%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCC-CcEEEeCcccccC-C----CCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCC
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGN-HDVTRVTQSSFNA-C----NTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCL   82 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~-H~V~~V~~~~y~~-C----~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~   82 (329)
                      |..=.+..++++||+|+|.+..+. |+|+......... .    ...........|. ..++++++|.|+|+|.  .|+.
T Consensus        12 ~~F~P~~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~tF~~~G~y~Y~C~--pH~~   89 (99)
T d1plca_          12 LAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCS--PHQG   89 (99)
T ss_dssp             SCEESSEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSCEEEEEECG--GGTT
T ss_pred             eEEeCCEEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEEEecCCCceEEEEeC--CCcC
Confidence            343455679999999999986544 9996542111000 0    0000111122333 4688999999999996  4999


Q ss_pred             CCCeEEEEee
Q 020242           83 GGQKLAINVS   92 (329)
Q Consensus        83 ~GmKl~I~V~   92 (329)
                      .||+..|.|.
T Consensus        90 ~GM~G~I~V~   99 (99)
T d1plca_          90 AGMVGKVTVN   99 (99)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            9999999883

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.19  E-value=3.1e-07  Score=71.19  Aligned_cols=81  Identities=11%  Similarity=0.004  Sum_probs=50.1

Q ss_pred             hhhccCCCceeeCCEEEEEEcCC-CCcEEEeCcccccCCCCCC-----CCcccCCCC-cEEEe---cccCceEEEcCCCC
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAG-NHDVTRVTQSSFNACNTTS-----PLSRTTNSP-ASVTL---TASGPHYFICSFPG   79 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~-~H~V~~V~~~~y~~C~~~~-----~~~~~~~G~-~~v~L---~~~G~~yFiCs~~~   79 (329)
                      |..=.+..++++||+|.|.+... .|+++.........+....     .......|. ..+++   +++|.|||+|..  
T Consensus        14 ~~F~P~~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~G~y~y~C~~--   91 (105)
T d2q5ba1          14 LQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAP--   91 (105)
T ss_dssp             SSEESSEEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECST--
T ss_pred             eEEeCCEEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceEEEEEEeccCCceEEEEeCC--
Confidence            33345567999999999988644 4666553222211122111     111233343 23443   356999999985  


Q ss_pred             CCCCCCeEEEEee
Q 020242           80 HCLGGQKLAINVS   92 (329)
Q Consensus        80 HC~~GmKl~I~V~   92 (329)
                      ||+.||+..|.|.
T Consensus        92 H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          92 HRGAGMVGKITVE  104 (105)
T ss_dssp             TGGGTCEEEEEEC
T ss_pred             CCCCCCEEEEEEc
Confidence            9999999999985

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.17  E-value=1.4e-06  Score=66.58  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             CcccccCCCeeeecCEEEEeeCCC-CceEEEEccccccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCe
Q 020242          182 GYQNWARNNNFSVGDILVFDYPAR-VHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQK  259 (329)
Q Consensus       182 ~Y~~Wa~~~~f~vGD~LvF~y~~~-~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmK  259 (329)
                      .|..  +.+++.+||+|.|....+ .|++......+...     .......| ...++++++|.|+|+|..  |+..|||
T Consensus        15 ~F~P--~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~~-----~~~~~~~g~~~~~tF~~~G~y~Y~C~~--H~~~gM~   85 (91)
T d1bxua_          15 AFEP--STIEIQAGDTVQWVNNKLAPHNVVVEGQPELSH-----KDLAFSPGETFEATFSEPGTYTYYCEP--HRGAGMV   85 (91)
T ss_dssp             SEES--SEEEECTTCEEEEEECSSCCEEEEETTCGGGCE-----EEEECSTTCEEEEECCSCEEEEEECTT--TGGGTCE
T ss_pred             EEEC--CEEEECCCCEEEEEECCcCCceEEecccccccc-----cccccCCCCCEEEEeccCceEEEEeCC--CCCCCCE
Confidence            3554  778999999999998654 45655432221110     00112234 347899999999999986  9999999


Q ss_pred             EEEEec
Q 020242          260 LAVNVT  265 (329)
Q Consensus       260 l~I~V~  265 (329)
                      ..|.|.
T Consensus        86 G~I~Ve   91 (91)
T d1bxua_          86 GKIVVQ   91 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999984

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.16  E-value=7.6e-07  Score=72.58  Aligned_cols=78  Identities=26%  Similarity=0.393  Sum_probs=51.2

Q ss_pred             CCCceeeCCEEEEEEcCC-----CCcEEEeCcccc-------------cCCCCCCC-----C---cccCCCC---cEEEe
Q 020242           15 CLFSFFFFTFSVFNFAAG-----NHDVTRVTQSSF-------------NACNTTSP-----L---SRTTNSP---ASVTL   65 (329)
Q Consensus        15 ~~~tf~vGD~LvF~y~~~-----~H~V~~V~~~~y-------------~~C~~~~~-----~---~~~~~G~---~~v~L   65 (329)
                      ...+++.||+|.|.|.+.     .|+++.+...+-             +.=....+     +   .....|.   .+|+.
T Consensus        32 ~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~t~~~~pg~s~~i~f~~  111 (139)
T d1qhqa_          32 TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRT  111 (139)
T ss_dssp             SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEEC
T ss_pred             CeEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccCCCcccccccccccCCcceEEEEEec
Confidence            446899999999999653     399887632210             00000000     0   0111222   24666


Q ss_pred             cccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           66 TASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        66 ~~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      .++|.|+|+|++++||+.||+..|.|.
T Consensus       112 ~~~G~y~f~Ct~pgH~~~GM~G~i~V~  138 (139)
T d1qhqa_         112 PAPGTYLYICTFPGHYLAGMKGTLTVT  138 (139)
T ss_dssp             CSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             CCCeEEEEEcCCcCcccccCeEEEEEc
Confidence            789999999999999999999999986

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.08  E-value=4.7e-07  Score=69.94  Aligned_cols=75  Identities=11%  Similarity=-0.008  Sum_probs=50.7

Q ss_pred             cCCCceeeCCEEEEEEc-CCCCcEEEeCcc-cccC---CCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           14 LCLFSFFFFTFSVFNFA-AGNHDVTRVTQS-SFNA---CNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~-~~~H~V~~V~~~-~y~~---C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      ...+++.+||+|.|.+. ...|+|+..... ..+.   ...  .......|. ..++++++|.|+|+|..  |+..||+.
T Consensus        18 P~~i~v~~GdtV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~--~~~~~~~g~t~~~tf~~~G~y~Y~C~~--H~~~gM~G   93 (98)
T d1pcsa_          18 PSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSH--KGLLFAAGESFTSTFTEPGTYTYYCEP--HRGAGMVG   93 (98)
T ss_dssp             SSEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCE--EEEECSTTCEEEEECCSCEEEEEECGG--GTTTTCEE
T ss_pred             CCEEEECCCCEEEEeECCCCccceEEeccccCCCccccccc--cccccCCCcEEEEeccCCceEEEEecc--CCCCCCEE
Confidence            44578999999999886 446998664211 0000   000  001223343 47899999999999975  99999999


Q ss_pred             EEEee
Q 020242           88 AINVS   92 (329)
Q Consensus        88 ~I~V~   92 (329)
                      .|.|.
T Consensus        94 ~I~Ve   98 (98)
T d1pcsa_          94 KVVVE   98 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99984

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.93  E-value=6.9e-06  Score=64.01  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             CCCeeeecCEEEEeeCC-CCceEEEEccccccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          188 RNNNFSVGDILVFDYPA-RVHDVVEVTKAAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~-~~h~V~~V~~~~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      ..+++++||+|.|.++. ..|+|.......-.. ....  .....| ...++++++|.|+|+|+.  |  .||+..|.|.
T Consensus        33 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~-~~~~--~~~~~g~~~~~tf~~pG~y~y~C~~--H--~~M~G~I~Ve  105 (105)
T d2ov0a1          33 PELHVKVGDTVTWINREAMPHNVHFVAGVLGEA-ALKG--PMMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVVE  105 (105)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSS-CEEC--CCBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             CEEEECCCCEEEEEECCCCceeEEEecccCCcc-cccc--cccCCCceEEEEecCCeEEEEEecC--C--CCCEEEEEEC
Confidence            56899999999998764 459988653221000 0000  112223 357889999999999998  6  7999999984

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=97.93  E-value=4.3e-06  Score=63.72  Aligned_cols=76  Identities=13%  Similarity=0.012  Sum_probs=51.9

Q ss_pred             hhhccCCCceeeCCEEEEEEcCCC-CcEEEeCcccccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           10 IDVFLCLFSFFFFTFSVFNFAAGN-HDVTRVTQSSFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        10 y~~Wa~~~tf~vGD~LvF~y~~~~-H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      |..=.+..++.+||+|.|....+. |+++.....+...     .......|. ..++++++|.|+|+|..  |+..||+.
T Consensus        14 ~~F~P~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~~-----~~~~~~~g~~~~~tF~~~G~y~Y~C~~--H~~~gM~G   86 (91)
T d1bxua_          14 LAFEPSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELSH-----KDLAFSPGETFEATFSEPGTYTYYCEP--HRGAGMVG   86 (91)
T ss_dssp             SSEESSEEEECTTCEEEEEECSSCCEEEEETTCGGGCE-----EEEECSTTCEEEEECCSCEEEEEECTT--TGGGTCEE
T ss_pred             eEEECCEEEECCCCEEEEEECCcCCceEEecccccccc-----cccccCCCCCEEEEeccCceEEEEeCC--CCCCCCEE
Confidence            444456679999999999997544 5554322221110     001223343 47899999999999986  99999999


Q ss_pred             EEEee
Q 020242           88 AINVS   92 (329)
Q Consensus        88 ~I~V~   92 (329)
                      .|.|.
T Consensus        87 ~I~Ve   91 (91)
T d1bxua_          87 KIVVQ   91 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99984

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.75  E-value=1.7e-05  Score=61.75  Aligned_cols=72  Identities=15%  Similarity=0.024  Sum_probs=47.9

Q ss_pred             cCCCceeeCCEEEEEEcC-CCCcEEEeCcccccCCCCCCCCcccCCC-CcEEEecccCceEEEcCCCCCCCCCCeEEEEe
Q 020242           14 LCLFSFFFFTFSVFNFAA-GNHDVTRVTQSSFNACNTTSPLSRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKLAINV   91 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V   91 (329)
                      ....++++||+|.|.... ..|+|.......-+. ....  .....| ...++++++|.|+|+|+.  |  .||+..|.|
T Consensus        32 P~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~-~~~~--~~~~~g~~~~~tf~~pG~y~y~C~~--H--~~M~G~I~V  104 (105)
T d2ov0a1          32 TPELHVKVGDTVTWINREAMPHNVHFVAGVLGEA-ALKG--PMMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVV  104 (105)
T ss_dssp             SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSS-CEEC--CCBCTTEEEEEEECSCEEEEEECSS--C--TTCEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCceeEEEecccCCcc-cccc--cccCCCceEEEEecCCeEEEEEecC--C--CCCEEEEEE
Confidence            345689999999998764 459986543211110 0001  112233 357899999999999998  5  699999988


Q ss_pred             e
Q 020242           92 S   92 (329)
Q Consensus        92 ~   92 (329)
                      .
T Consensus       105 e  105 (105)
T d2ov0a1         105 E  105 (105)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=97.56  E-value=5.9e-05  Score=58.45  Aligned_cols=67  Identities=22%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             CCCeeeecCEEEEeeCC-CCceEEEEcc----ccccCCCCCCCcccCCCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 020242          188 RNNNFSVGDILVFDYPA-RVHDVVEVTK----AAYDSCNSSSTISKSTNP-PTRITLGTAGEHYFFCTFPGHCSAGQKLA  261 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~-~~h~V~~V~~----~~y~~C~~~~~i~~~~~G-~~~v~L~~~G~~YFic~~~~HC~~GmKl~  261 (329)
                      ..+++++||+|.|.+.. ..|+|.....    ..|++       .....| ...++++++|.|+|+|..  |  .||+..
T Consensus        34 ~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~s-------~~~~~~~~~~~tf~~~G~y~y~C~~--H--~~M~G~  102 (106)
T d1id2a_          34 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--H--PFMRGK  102 (106)
T ss_dssp             SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--C--TTCEEE
T ss_pred             CEEEECCCCEEEEEECCCCceeEEeccccCCcccccc-------cccCCCceEEEecCCCeEEEEEccC--C--CCCEEE
Confidence            56899999999998754 4699875321    11211       111122 357889999999999997  6  699999


Q ss_pred             EEec
Q 020242          262 VNVT  265 (329)
Q Consensus       262 I~V~  265 (329)
                      |.|.
T Consensus       103 I~Ve  106 (106)
T d1id2a_         103 VIVE  106 (106)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9984

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=97.41  E-value=8.2e-05  Score=57.62  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             cCCCceeeCCEEEEEEc-CCCCcEEEeCc----ccccCCCCCCCCcccCCCC-cEEEecccCceEEEcCCCCCCCCCCeE
Q 020242           14 LCLFSFFFFTFSVFNFA-AGNHDVTRVTQ----SSFNACNTTSPLSRTTNSP-ASVTLTASGPHYFICSFPGHCLGGQKL   87 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~-~~~H~V~~V~~----~~y~~C~~~~~~~~~~~G~-~~v~L~~~G~~yFiCs~~~HC~~GmKl   87 (329)
                      ...+++++||+|.|... ...|+|.....    ..|++       .....|. .+++++++|.|+|+|+.  |  .||+.
T Consensus        33 P~~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~~f~s-------~~~~~~~~~~~tf~~~G~y~y~C~~--H--~~M~G  101 (106)
T d1id2a_          33 TPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--H--PFMRG  101 (106)
T ss_dssp             SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--C--TTCEE
T ss_pred             CCEEEECCCCEEEEEECCCCceeEEeccccCCcccccc-------cccCCCceEEEecCCCeEEEEEccC--C--CCCEE
Confidence            34568999999999875 33699854321    11111       1112222 57899999999999997  5  59999


Q ss_pred             EEEee
Q 020242           88 AINVS   92 (329)
Q Consensus        88 ~I~V~   92 (329)
                      .|.|.
T Consensus       102 ~I~Ve  106 (106)
T d1id2a_         102 KVIVE  106 (106)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99884

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.37  E-value=0.00012  Score=59.03  Aligned_cols=81  Identities=14%  Similarity=0.272  Sum_probs=49.2

Q ss_pred             CcccccCCCeeeecC-EEEEeeCC-CC-------ceEEEEccccccC----------------CCCCCCcc---cCCCCC
Q 020242          182 GYQNWARNNNFSVGD-ILVFDYPA-RV-------HDVVEVTKAAYDS----------------CNSSSTIS---KSTNPP  233 (329)
Q Consensus       182 ~Y~~Wa~~~~f~vGD-~LvF~y~~-~~-------h~V~~V~~~~y~~----------------C~~~~~i~---~~~~G~  233 (329)
                      .|+.  +.++++.|| .|.|.|.+ +.       |+++.+...+++.                -+....+.   ....|.
T Consensus        14 ~fd~--~~i~V~aG~e~v~i~~~N~g~lph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~via~t~~l~pGe   91 (129)
T d1cuoa_          14 TYST--RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGE   91 (129)
T ss_dssp             CCSC--SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTC
T ss_pred             cCcc--cEEEEeCCCEEEEEEEEeCCcCCceeEEeeeeecccccHHHHHHHHHhhcccccCCCCCchhhhhhccccCccc
Confidence            3554  668889995 55555532 22       8887764332221                11111121   122332


Q ss_pred             ---cEEEe---CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          234 ---TRITL---GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       234 ---~~v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                         ..|+.   +++|.|.|+|+++||= +||+..|.|.
T Consensus        92 ~~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~gM~G~l~V~  128 (129)
T d1cuoa_          92 KTSVKFKVSALSKDEAYTYFCSYPGHF-SMMRGTLKLE  128 (129)
T ss_dssp             EEEEEEEGGGCCTTSCEEEECCSTTCT-TTSEEEEEEE
T ss_pred             cceEEEEccccCCCceEEEEeCCCCcc-cCcEEEEEEe
Confidence               23443   4689999999999995 8999999986

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.34  E-value=0.0002  Score=57.66  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             CCCee-eecCEEEEeeCCC-C-------ceEEEEcccccc----------------CCCCCCCcc---cCCCCC---cEE
Q 020242          188 RNNNF-SVGDILVFDYPAR-V-------HDVVEVTKAAYD----------------SCNSSSTIS---KSTNPP---TRI  236 (329)
Q Consensus       188 ~~~~f-~vGD~LvF~y~~~-~-------h~V~~V~~~~y~----------------~C~~~~~i~---~~~~G~---~~v  236 (329)
                      +.+++ +.|.+|.|.|.+. .       |+++.++..+++                .=+....+.   ....|.   ..|
T Consensus        18 ~~i~V~k~G~~V~l~~~N~g~l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~t~~l~pget~~i~f   97 (129)
T d2ccwa1          18 KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTF   97 (129)
T ss_dssp             SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred             ceEEEecCCCEEEEEEEcCCcCchheeeccccccCcccHHHHHHHHHHhhhccccCCCccccccccccccCCCceEEEEE
Confidence            44555 4699999988643 2       998887543322                111111111   122333   234


Q ss_pred             Ee---CCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 020242          237 TL---GTAGEHYFFCTFPGHCSAGQKLAVNVTG  266 (329)
Q Consensus       237 ~L---~~~G~~YFic~~~~HC~~GmKl~I~V~~  266 (329)
                      +.   +++|.|.|+|+++|| .+||+..|.|.+
T Consensus        98 ~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~~  129 (129)
T d2ccwa1          98 DVSKIAAGENYAYFCSFPGH-WAMMKGTLKLGS  129 (129)
T ss_dssp             EGGGSCTTCCEEEECCSTTG-GGTSEEEEEECC
T ss_pred             EecccCCCccEEEEeCCCCh-hhCcEEEEEEcC
Confidence            44   468999999999999 589999999964

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=97.13  E-value=0.00026  Score=57.82  Aligned_cols=76  Identities=24%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             CeeeecCEEEEeeCC----CCceEEEEccc-cccCCCCCCCc-------ccCCCCC---cEEEe-CCCCcEEEEcCCCCC
Q 020242          190 NNFSVGDILVFDYPA----RVHDVVEVTKA-AYDSCNSSSTI-------SKSTNPP---TRITL-GTAGEHYFFCTFPGH  253 (329)
Q Consensus       190 ~~f~vGD~LvF~y~~----~~h~V~~V~~~-~y~~C~~~~~i-------~~~~~G~---~~v~L-~~~G~~YFic~~~~H  253 (329)
                      ++++.||+|.|++.+    ..|+....... .+..=......       .....|.   ..|++ +.+|+|||.|.+.+|
T Consensus        62 i~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H  141 (153)
T d1e30a_          62 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGH  141 (153)
T ss_dssp             EEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTT
T ss_pred             EEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhH
Confidence            688999999999843    24777665321 22111110000       0111221   23444 569999999999999


Q ss_pred             CCCCCeEEEEec
Q 020242          254 CSAGQKLAVNVT  265 (329)
Q Consensus       254 C~~GmKl~I~V~  265 (329)
                      =++||...|.|.
T Consensus       142 ~~~GM~G~iiVe  153 (153)
T d1e30a_         142 AATGQFGKIVVK  153 (153)
T ss_dssp             TTTTCEEEEEEC
T ss_pred             HHCCCEEEEEEC
Confidence            999999999984

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.00  E-value=0.00051  Score=55.19  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             eeCCEEEEEEcCCC--------CcEEEeCcccccC--------------CCCCCC-C----cccCCCC-cEEEe-----c
Q 020242           20 FFFTFSVFNFAAGN--------HDVTRVTQSSFNA--------------CNTTSP-L----SRTTNSP-ASVTL-----T   66 (329)
Q Consensus        20 ~vGD~LvF~y~~~~--------H~V~~V~~~~y~~--------------C~~~~~-~----~~~~~G~-~~v~L-----~   66 (329)
                      +.|.+|.|.|.+..        |+++.++..+++.              =..... +    .....|. ..|++     +
T Consensus        24 k~G~~V~l~~~N~g~l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~t~~l~pget~~i~f~~p~~~  103 (129)
T d2ccwa1          24 KSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKIA  103 (129)
T ss_dssp             TTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSC
T ss_pred             cCCCEEEEEEEcCCcCchheeeccccccCcccHHHHHHHHHHhhhccccCCCccccccccccccCCCceEEEEEEecccC
Confidence            45999999997532        9988775433321              000111 1    1122333 34444     3


Q ss_pred             ccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           67 ASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        67 ~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      ++|.|.|+|+++|| ..||+..|.|.
T Consensus       104 ~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d2ccwa1         104 AGENYAYFCSFPGH-WAMMKGTLKLG  128 (129)
T ss_dssp             TTCCEEEECCSTTG-GGTSEEEEEEC
T ss_pred             CCccEEEEeCCCCh-hhCcEEEEEEc
Confidence            57999999999999 69999999985

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.00  E-value=0.00088  Score=53.79  Aligned_cols=77  Identities=17%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             CCCceeeCC-EEEEEEcC-CC-------CcEEEeCcccccCC-----------C---C--CCCC---cccCCCC-cEEEe
Q 020242           15 CLFSFFFFT-FSVFNFAA-GN-------HDVTRVTQSSFNAC-----------N---T--TSPL---SRTTNSP-ASVTL   65 (329)
Q Consensus        15 ~~~tf~vGD-~LvF~y~~-~~-------H~V~~V~~~~y~~C-----------~---~--~~~~---~~~~~G~-~~v~L   65 (329)
                      ..++++.|| .|.|.|.+ +.       |+++.+...+++.=           +   .  ..-+   .....|. ..|++
T Consensus        18 ~~i~V~aG~e~v~i~~~N~g~lph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~via~t~~l~pGe~~~i~f   97 (129)
T d1cuoa_          18 RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVKF   97 (129)
T ss_dssp             SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEEE
T ss_pred             cEEEEeCCCEEEEEEEEeCCcCCceeEEeeeeecccccHHHHHHHHHhhcccccCCCCCchhhhhhccccCccccceEEE
Confidence            345788896 67777753 32       88876644333210           0   0  0011   1122333 34544


Q ss_pred             -----cccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           66 -----TASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        66 -----~~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                           +++|.|.|+|++++| ..||+..|.|.
T Consensus        98 ~~p~~~~~G~Y~f~Ct~PGH-~~gM~G~l~V~  128 (129)
T d1cuoa_          98 KVSALSKDEAYTYFCSYPGH-FSMMRGTLKLE  128 (129)
T ss_dssp             EGGGCCTTSCEEEECCSTTC-TTTSEEEEEEE
T ss_pred             EccccCCCceEEEEeCCCCc-ccCcEEEEEEe
Confidence                 358999999999999 58999999985

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.00  E-value=0.00021  Score=55.96  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             CCCeeeecCEEEEeeCC---CCceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCC-CCCeE
Q 020242          188 RNNNFSVGDILVFDYPA---RVHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCS-AGQKL  260 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~---~~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~-~GmKl  260 (329)
                      ..+++++||.|.|.+.+   -.|++..-   ++.      .......|   ...|+++++|.|+|+|..  ||. .||+.
T Consensus        38 ~~i~v~~Gd~V~~~~~n~d~~~H~~~i~---~~~------~~~~~~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G  106 (112)
T d1ibya_          38 ETLVVKKGDAVKVVVENKSPISEGFSID---AFG------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG  106 (112)
T ss_dssp             CEEEEETTCEEEEEEEECSSSCEEEEEG---GGT------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred             CEEEEeCCCEEEEEEEeCCCCceeeeec---ccc------cccccCCcceEEEEEEeccceEEEEECcc--cChhhcCeE
Confidence            35899999999888743   24887742   111      00111223   246788999999999997  887 45999


Q ss_pred             EEEecC
Q 020242          261 AVNVTG  266 (329)
Q Consensus       261 ~I~V~~  266 (329)
                      .|.|..
T Consensus       107 ~i~V~e  112 (112)
T d1ibya_         107 TLNVVE  112 (112)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999863

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=96.75  E-value=0.001  Score=54.15  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=47.0

Q ss_pred             CceeeCCEEEEEEcCC----CCcEEEeCcc-cccCCCCCCC-------CcccCCCC-c--EEEe-cccCceEEEcCCCCC
Q 020242           17 FSFFFFTFSVFNFAAG----NHDVTRVTQS-SFNACNTTSP-------LSRTTNSP-A--SVTL-TASGPHYFICSFPGH   80 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~----~H~V~~V~~~-~y~~C~~~~~-------~~~~~~G~-~--~v~L-~~~G~~yFiCs~~~H   80 (329)
                      ++++.||+|.|++.+.    .|+....... .+..=+....       ......|. .  .+++ +.+|.|||.|.+++|
T Consensus        62 i~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H  141 (153)
T d1e30a_          62 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGH  141 (153)
T ss_dssp             EEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTT
T ss_pred             EEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhH
Confidence            5789999999999542    3776554221 2211111000       00112222 2  3443 468999999999999


Q ss_pred             CCCCCeEEEEee
Q 020242           81 CLGGQKLAINVS   92 (329)
Q Consensus        81 C~~GmKl~I~V~   92 (329)
                      =..||...|.|.
T Consensus       142 ~~~GM~G~iiVe  153 (153)
T d1e30a_         142 AATGQFGKIVVK  153 (153)
T ss_dssp             TTTTCEEEEEEC
T ss_pred             HHCCCEEEEEEC
Confidence            999999999874

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.44  E-value=0.00082  Score=52.37  Aligned_cols=66  Identities=12%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             CCceeeCCEEEEEEcC-C--CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCCCCC-CCCeEE
Q 020242           16 LFSFFFFTFSVFNFAA-G--NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCL-GGQKLA   88 (329)
Q Consensus        16 ~~tf~vGD~LvF~y~~-~--~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~-~GmKl~   88 (329)
                      .++++.||.|.|.+.+ +  .|++..   .++..      ......|.   ..++++++|.|+|+|..  ||. .||+..
T Consensus        39 ~i~v~~Gd~V~~~~~n~d~~~H~~~i---~~~~~------~~~~~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G~  107 (112)
T d1ibya_          39 TLVVKKGDAVKVVVENKSPISEGFSI---DAFGV------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT  107 (112)
T ss_dssp             EEEEETTCEEEEEEEECSSSCEEEEE---GGGTE------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEeCCCCceeeee---ccccc------ccccCCcceEEEEEEeccceEEEEECcc--cChhhcCeEE
Confidence            4799999999998863 2  477643   12211      01122233   35778999999999997  786 569999


Q ss_pred             EEee
Q 020242           89 INVS   92 (329)
Q Consensus        89 I~V~   92 (329)
                      |.|.
T Consensus       108 i~V~  111 (112)
T d1ibya_         108 LNVV  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9886

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=96.30  E-value=0.0043  Score=49.54  Aligned_cols=26  Identities=35%  Similarity=0.650  Sum_probs=23.5

Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +++|.|-|+|+++||= +|||..|.|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_         103 AAGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             CTTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cCceEEEEEC
Confidence            4679999999999997 8999999984

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.003  Score=51.53  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             CeeeecCEEEE---eeCC------CCceEEEEccccccCCCCCCCc-ccC--C--CCCcEEEe------------C-CCC
Q 020242          190 NNFSVGDILVF---DYPA------RVHDVVEVTKAAYDSCNSSSTI-SKS--T--NPPTRITL------------G-TAG  242 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~------~~h~V~~V~~~~y~~C~~~~~i-~~~--~--~G~~~v~L------------~-~~G  242 (329)
                      ...++||.|-+   .|..      ....+++|++++|+.|+....- ..+  +  .+..++++            . ++|
T Consensus        24 i~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF~pG  103 (141)
T d1ikop_          24 LYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKN  103 (141)
T ss_dssp             ECCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeeecCC
Confidence            45678899988   4443      2367889999999999975421 111  1  11122211            1 356


Q ss_pred             -cEEEEcCCCC-----------CCC-CCCeEEEEecC
Q 020242          243 -EHYFFCTFPG-----------HCS-AGQKLAVNVTG  266 (329)
Q Consensus       243 -~~YFic~~~~-----------HC~-~GmKl~I~V~~  266 (329)
                       .||||++-.|           -|. ..|||.|.|..
T Consensus       104 ~~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V~~  140 (141)
T d1ikop_         104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQ  140 (141)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CeEEEEEcCCCCCCccccccCCccCCCccEEEEEeCC
Confidence             6888887533           398 58999999964

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0054  Score=49.80  Aligned_cols=78  Identities=22%  Similarity=0.300  Sum_probs=50.1

Q ss_pred             CeeeecCEEEE---eeCC-------CCceEEEEccccccCCCCCCCc-c------cC-CCCCcEEEe--C----------
Q 020242          190 NNFSVGDILVF---DYPA-------RVHDVVEVTKAAYDSCNSSSTI-S------KS-TNPPTRITL--G----------  239 (329)
Q Consensus       190 ~~f~vGD~LvF---~y~~-------~~h~V~~V~~~~y~~C~~~~~i-~------~~-~~G~~~v~L--~----------  239 (329)
                      +.+++||.|-+   .|..       ....+.+|++++|+.|+..+.. .      .+ ..|..++++  .          
T Consensus        23 i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~E  102 (138)
T d1shxa1          23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCee
Confidence            57789999988   4432       2367889999999999976532 1      11 133333221  1          


Q ss_pred             -CCC-cEEEEcCC---CCCCCCCCeEEEEecCCC
Q 020242          240 -TAG-EHYFFCTF---PGHCSAGQKLAVNVTGGS  268 (329)
Q Consensus       240 -~~G-~~YFic~~---~~HC~~GmKl~I~V~~~~  268 (329)
                       ++| .||||++-   .++|+ -|||.|.|....
T Consensus       103 F~pG~~YY~ISTs~g~~~~~~-~mrLkv~V~p~~  135 (138)
T d1shxa1         103 FRPGREYFYISSAIPDNGRRS-CLKLKVFVRPTN  135 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSC-CCEEEEEECCTT
T ss_pred             ecCCCEEEEEEeeCCCCCCcc-ceEeEEEEeCCC
Confidence             356 68888764   45554 499999997544

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.81  E-value=0.01  Score=47.21  Aligned_cols=26  Identities=38%  Similarity=0.689  Sum_probs=23.9

Q ss_pred             CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 020242          239 GTAGEHYFFCTFPGHCSAGQKLAVNVT  265 (329)
Q Consensus       239 ~~~G~~YFic~~~~HC~~GmKl~I~V~  265 (329)
                      +++|.|-|+|+++||= +||+..|+|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_         103 KEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             CTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cccEEEEEEC
Confidence            5789999999999998 8999999984

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.66  E-value=0.0024  Score=51.24  Aligned_cols=67  Identities=12%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             CceeeCCEEEEEEcCC------CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCCCCC-CCCe
Q 020242           17 FSFFFFTFSVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCL-GGQK   86 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~-~GmK   86 (329)
                      .+++.||.|.|++.+.      .|.... .  +|.     .. .....|.   ..|+.+++|.|+|+|+...|=. .||+
T Consensus        54 i~V~~Gd~V~~~ltN~d~~~~v~H~~~i-~--~~~-----~~-~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~M~  124 (132)
T d1fwxa1          54 FTVKEGDEVTVIVTNLDEIDDLTHGFTM-G--NYG-----VA-MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMR  124 (132)
T ss_dssp             EEEETTCEEEEEEEECCCSTTCCEEEEE-T--TTT-----EE-EEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTCE
T ss_pred             EEEcCCCEEEEEEEcCCCCccceEeech-h--hhc-----cc-cccCCCEEEEEEEeCCCCeEEEEECccccCcchhcCE
Confidence            3667799999999642      143322 1  111     00 1122343   3578889999999999754332 6899


Q ss_pred             EEEEee
Q 020242           87 LAINVS   92 (329)
Q Consensus        87 l~I~V~   92 (329)
                      ..|.|.
T Consensus       125 G~iiVe  130 (132)
T d1fwxa1         125 GRMLVE  130 (132)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.59  E-value=0.0053  Score=49.15  Aligned_cols=70  Identities=10%  Similarity=0.093  Sum_probs=45.1

Q ss_pred             CCCeeeecCEEEEeeCCC------CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCCCCCCC-CC
Q 020242          188 RNNNFSVGDILVFDYPAR------VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTFPGHCS-AG  257 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~------~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~~~HC~-~G  257 (329)
                      ..++++.||.|.|...+.      .|..... +.+.+        .....|.   ..|+.+++|.|+|+|+...|=. .|
T Consensus        52 ~~i~V~~Gd~V~~~ltN~d~~~~v~H~~~i~-~~~~~--------~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~  122 (132)
T d1fwxa1          52 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMG-NYGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHME  122 (132)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEET-TTTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTT
T ss_pred             CEEEEcCCCEEEEEEEcCCCCccceEeechh-hhccc--------cccCCCEEEEEEEeCCCCeEEEEECccccCcchhc
Confidence            356888899999988542      2554431 11100        0112232   4678889999999999754433 68


Q ss_pred             CeEEEEecC
Q 020242          258 QKLAVNVTG  266 (329)
Q Consensus       258 mKl~I~V~~  266 (329)
                      |+..|.|..
T Consensus       123 M~G~iiVeP  131 (132)
T d1fwxa1         123 MRGRMLVEP  131 (132)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEEc
Confidence            999999864

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=95.02  E-value=0.021  Score=45.34  Aligned_cols=25  Identities=36%  Similarity=0.584  Sum_probs=22.4

Q ss_pred             ccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           67 ASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        67 ~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      ++|.|-|+|+++||= .|||..+.|.
T Consensus       104 ~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_         104 AGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             TTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             CCceEEEEECCCCcc-cCceEEEEEC
Confidence            569999999999996 8999999883

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.81  E-value=0.024  Score=45.08  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             CCCeeeecCEEEEeeCC--C----CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCCCCCC-CC
Q 020242          188 RNNNFSVGDILVFDYPA--R----VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFPGHCS-AG  257 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~--~----~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~~HC~-~G  257 (329)
                      ...+++.||.+.|...+  +    .|+.....   |.      ......-|   ...++.+++|.|+|+|+...|=. .|
T Consensus        51 ~~i~V~~Gd~V~~~vtn~~~s~Dv~H~f~ip~---~~------v~~~~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~  121 (131)
T d1qnia1          51 TDFKVKEGDEVTVYITNLDMVEDVTHGFCMVN---HG------VSMEISPQQTASVTFTAGKPGVYWYYCNWFCHALHME  121 (131)
T ss_dssp             SEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSSEEEEEECCSCCSTTGGG
T ss_pred             ceEEecCCCEEEEEEEccCCCCcceEEEEEec---cC------cccccCCCceEEEEEEcCCCEEEEEECccccCcchhc
Confidence            45789999999998752  1    36555321   11      00112223   24678899999999999743222 57


Q ss_pred             CeEEEEecC
Q 020242          258 QKLAVNVTG  266 (329)
Q Consensus       258 mKl~I~V~~  266 (329)
                      |+..|.|..
T Consensus       122 M~g~i~Vep  130 (131)
T d1qnia1         122 MVGRMLVEA  130 (131)
T ss_dssp             CEEEEEEEC
T ss_pred             CeeEEEEEe
Confidence            999999975

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=94.67  E-value=0.04  Score=43.28  Aligned_cols=68  Identities=18%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             CCCeeeecCEEEEeeCCC--CceEEEEccccccCCCCCCCcccCCCCC---cEEEeCCCCcEEEEcCC---CCCCCCCCe
Q 020242          188 RNNNFSVGDILVFDYPAR--VHDVVEVTKAAYDSCNSSSTISKSTNPP---TRITLGTAGEHYFFCTF---PGHCSAGQK  259 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~--~h~V~~V~~~~y~~C~~~~~i~~~~~G~---~~v~L~~~G~~YFic~~---~~HC~~GmK  259 (329)
                      +..++..||.+.|+..+.  .|+....   +|.      .......|.   ..|+.+++|.|+|+|..   .+|  .+|+
T Consensus        47 ~~l~vp~G~~V~~~lts~DV~H~f~ip---~~~------v~~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M~  115 (122)
T d2cuaa_          47 NPIEVPQGAEIVFKITSPDVIHGFHVE---GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMF  115 (122)
T ss_dssp             SSEEEETTSEEEEEEEBSSSCEEEEET---TSS------CEEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCE
T ss_pred             CEEEEeCCCEEEEEEEcCCccceeEec---CCC------eeEEEecCceEEEEEEeccceeEEEEehhccCCCc--ccCe
Confidence            468999999999988643  4776531   111      000111232   35678899999999998   466  5799


Q ss_pred             EEEEecC
Q 020242          260 LAVNVTG  266 (329)
Q Consensus       260 l~I~V~~  266 (329)
                      ..|.|..
T Consensus       116 g~i~V~e  122 (122)
T d2cuaa_         116 GTIVVKE  122 (122)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9998863

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=94.47  E-value=0.016  Score=46.94  Aligned_cols=81  Identities=11%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             CCeeeecCEEEEeeCCC-----CceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCC---CCCCCCeE
Q 020242          189 NNNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG---HCSAGQKL  260 (329)
Q Consensus       189 ~~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~---HC~~GmKl  260 (329)
                      -++++.||.|++++.+.     .|.+..-....-+.=.....+....+-...|+++++|.+||.|....   |=..||-.
T Consensus        59 ~i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~~~~~~h~~~Gm~G  138 (151)
T d1kbva1          59 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYG  138 (151)
T ss_dssp             BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEE
T ss_pred             eEEEECCCEEEEEEEcCCCCceeeeccccccccCCCCcceeeeCCCCEEEEEEeCCCCeEEEEECCCCChHHHHhCCCEE
Confidence            36899999999998542     24443210000000000111111111224678899999999998654   66789999


Q ss_pred             EEEecCCCC
Q 020242          261 AVNVTGGSS  269 (329)
Q Consensus       261 ~I~V~~~~~  269 (329)
                      .|.|....+
T Consensus       139 ~liV~p~~~  147 (151)
T d1kbva1         139 LILVEPKEG  147 (151)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEECCCC
Confidence            999975543

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=94.01  E-value=0.023  Score=44.83  Aligned_cols=81  Identities=11%  Similarity=0.056  Sum_probs=49.7

Q ss_pred             CCCeeeecCEEEEeeCCCC----ceEEEEccccccCCCCCCCcc-----cCCCCC---cEEEeCCCCcEEEEcCCCCCCC
Q 020242          188 RNNNFSVGDILVFDYPARV----HDVVEVTKAAYDSCNSSSTIS-----KSTNPP---TRITLGTAGEHYFFCTFPGHCS  255 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~~----h~V~~V~~~~y~~C~~~~~i~-----~~~~G~---~~v~L~~~G~~YFic~~~~HC~  255 (329)
                      ..++++.||+|++++.+..    +++.--. -.+..-...+...     ....|.   ..++++++|++||.|....|=.
T Consensus        34 P~i~v~~GD~v~i~l~N~l~~~~~~iH~Hg-~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~  112 (129)
T d1aoza1          34 PTIRANAGDSVVVELTNKLHTEGVVIHWHG-ILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS  112 (129)
T ss_dssp             CCEEEETTCEEEEEEEECCSSCCBCEEEET-CCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred             CeEEEECCcEEEEEEEeCCCCCCeeeeecc-ceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHHHHh
Confidence            3478999999999886431    2222110 0000111000000     122333   4677899999999999999999


Q ss_pred             CCCeEEEEecCCCC
Q 020242          256 AGQKLAVNVTGGSS  269 (329)
Q Consensus       256 ~GmKl~I~V~~~~~  269 (329)
                      .||-..|.|....+
T Consensus       113 ~Gm~G~~iV~~~~~  126 (129)
T d1aoza1         113 AGLYGSLIVDPPQG  126 (129)
T ss_dssp             GTCEEEEEEECCTT
T ss_pred             CCCEEEEEEcCCCC
Confidence            99999999976554

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=93.69  E-value=0.029  Score=45.34  Aligned_cols=85  Identities=13%  Similarity=0.070  Sum_probs=50.5

Q ss_pred             CChhhccCC-------CceeeCCEEEEEEcCC-----CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceE
Q 020242            8 SDIDVFLCL-------FSFFFFTFSVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHY   72 (329)
Q Consensus         8 ~~y~~Wa~~-------~tf~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~y   72 (329)
                      ..+..|.-+       ++++.||+|++++.+.     -|.+..-....-+.   .........|.   ..++++++|.+|
T Consensus        44 ~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~~---~~~~~~i~PG~t~~y~f~a~~~Gt~~  120 (151)
T d1kbva1          44 VEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG---GAAATFTAPGRTSTFSFKALQPGLYI  120 (151)
T ss_dssp             EEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GTTTTCBCTTEEEEEEEECCSCEEEE
T ss_pred             cEEEEEEECCccCCCeEEEECCCEEEEEEEcCCCCceeeeccccccccCCC---CcceeeeCCCCEEEEEEeCCCCeEEE
Confidence            346667544       4779999999999642     13332210000000   00001122233   467889999999


Q ss_pred             EEcCCCC---CCCCCCeEEEEeecCC
Q 020242           73 FICSFPG---HCLGGQKLAINVSARG   95 (329)
Q Consensus        73 FiCs~~~---HC~~GmKl~I~V~~~~   95 (329)
                      |.|....   |=..||...|.|....
T Consensus       121 YH~H~~~~~~h~~~Gm~G~liV~p~~  146 (151)
T d1kbva1         121 YHCAVAPVGMHIANGMYGLILVEPKE  146 (151)
T ss_dssp             EECCCSSHHHHHHTTCEEEEEEECTT
T ss_pred             EECCCCChHHHHhCCCEEEEEEECCC
Confidence            9998654   6678999988886543

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=93.64  E-value=0.024  Score=46.54  Aligned_cols=80  Identities=14%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             CeeeecCEEEEeeCCC-----CceEEEEccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCC----CCCCCCeE
Q 020242          190 NNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG----HCSAGQKL  260 (329)
Q Consensus       190 ~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~----HC~~GmKl  260 (329)
                      ++++.||+|++++.+.     -|++..=.......=.....|....+-...|+++++|.+||.|...+    |=..||-.
T Consensus        67 I~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~Gl~G  146 (159)
T d1oe2a1          67 LVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSG  146 (159)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEE
T ss_pred             EEEECCcEEEEEEECCCccccccceeeccccCCCCCcccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhCCCEE
Confidence            7889999999999753     24554311000000000011211111224678899999999997532    44689999


Q ss_pred             EEEecCCCC
Q 020242          261 AVNVTGGSS  269 (329)
Q Consensus       261 ~I~V~~~~~  269 (329)
                      .|.|....+
T Consensus       147 ~liV~p~e~  155 (159)
T d1oe2a1         147 TLMVLPRDG  155 (159)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEECCCC
Confidence            999876554

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=93.14  E-value=0.051  Score=42.61  Aligned_cols=68  Identities=18%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             cCCCceeeCCEEEEEEcCC--CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCC---CCCCCCCC
Q 020242           14 LCLFSFFFFTFSVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSF---PGHCLGGQ   85 (329)
Q Consensus        14 a~~~tf~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~---~~HC~~Gm   85 (329)
                      ....++..||.|.|+..+.  .|+... .  +|.-      ......|.   ..++.+++|.|+|+|+.   .+|  .+|
T Consensus        46 p~~l~vp~G~~V~~~lts~DV~H~f~i-p--~~~v------~~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M  114 (122)
T d2cuaa_          46 PNPIEVPQGAEIVFKITSPDVIHGFHV-E--GTNI------NVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNM  114 (122)
T ss_dssp             SSSEEEETTSEEEEEEEBSSSCEEEEE-T--TSSC------EEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTC
T ss_pred             CCEEEEeCCCEEEEEEEcCCccceeEe-c--CCCe------eEEEecCceEEEEEEeccceeEEEEehhccCCCc--ccC
Confidence            3346899999999999743  355432 1  1110      00112233   34678899999999998   466  579


Q ss_pred             eEEEEee
Q 020242           86 KLAINVS   92 (329)
Q Consensus        86 Kl~I~V~   92 (329)
                      +..|.|.
T Consensus       115 ~g~i~V~  121 (122)
T d2cuaa_         115 FGTIVVK  121 (122)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9998885

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.10  E-value=0.057  Score=42.81  Aligned_cols=68  Identities=15%  Similarity=0.085  Sum_probs=42.9

Q ss_pred             CceeeCCEEEEEEcCC------CCcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCCCCC-CCCe
Q 020242           17 FSFFFFTFSVFNFAAG------NHDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPGHCL-GGQK   86 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~HC~-~GmK   86 (329)
                      .+++.||.|.|+..+.      .|+....   +|.      -......|.   ..++.+++|.|+|+|+..-|=. .||+
T Consensus        53 i~V~~Gd~V~~~vtn~~~s~Dv~H~f~ip---~~~------v~~~~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~M~  123 (131)
T d1qnia1          53 FKVKEGDEVTVYITNLDMVEDVTHGFCMV---NHG------VSMEISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEMV  123 (131)
T ss_dssp             EEEETTCEEEEEEEECCCSTTCCEEEEET---TTT------EEEEECTTCEEEEEEECCSSEEEEEECCSCCSTTGGGCE
T ss_pred             EEecCCCEEEEEEEccCCCCcceEEEEEe---ccC------cccccCCCceEEEEEEcCCCEEEEEECccccCcchhcCe
Confidence            5788899999998631      2444321   111      001122343   3588899999999999742221 5799


Q ss_pred             EEEEeec
Q 020242           87 LAINVSA   93 (329)
Q Consensus        87 l~I~V~~   93 (329)
                      ..|.|..
T Consensus       124 g~i~Vep  130 (131)
T d1qnia1         124 GRMLVEA  130 (131)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEe
Confidence            9999974

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=92.67  E-value=0.044  Score=43.06  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=30.2

Q ss_pred             cEEEecccCceEEEcCCCCCCCCCCeEEEEeecCC
Q 020242           61 ASVTLTASGPHYFICSFPGHCLGGQKLAINVSARG   95 (329)
Q Consensus        61 ~~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V~~~~   95 (329)
                      ..+.++.+|++||.|-...|=..||-..|.|....
T Consensus        91 y~f~a~~~Gt~~YH~H~~~h~~~Gm~G~~iV~~~~  125 (129)
T d1aoza1          91 YNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQ  125 (129)
T ss_dssp             EEEECCSCEEEEEEECSTTTGGGTCEEEEEEECCT
T ss_pred             EEEECCCCCceEEecCCHHHHhCCCEEEEEEcCCC
Confidence            35788999999999999999999999999887543

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=92.31  E-value=0.047  Score=44.63  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=45.7

Q ss_pred             CceeeCCEEEEEEcCCC-----CcEEEeC-cccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCC----CCCC
Q 020242           17 FSFFFFTFSVFNFAAGN-----HDVTRVT-QSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPG----HCLG   83 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~~-----H~V~~V~-~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~----HC~~   83 (329)
                      ++++.||+|++++.+..     |++..=. ....+    .........|.   ..++++++|.+||.|...+    |=..
T Consensus        67 I~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~----g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~  142 (159)
T d1oe2a1          67 LVVHEGDYVQLTLVNPATNAMPHNVEFHGATGALG----GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS  142 (159)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG----GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred             EEEECCcEEEEEEECCCccccccceeeccccCCCC----CcccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhC
Confidence            57888999999997532     4443211 00000    00001122333   3678899999999997532    5568


Q ss_pred             CCeEEEEeecCCC
Q 020242           84 GQKLAINVSARGS   96 (329)
Q Consensus        84 GmKl~I~V~~~~~   96 (329)
                      ||...|.|....+
T Consensus       143 Gl~G~liV~p~e~  155 (159)
T d1oe2a1         143 GMSGTLMVLPRDG  155 (159)
T ss_dssp             TCEEEEEEECTTC
T ss_pred             CCEEEEEEECCCC
Confidence            9988888865444

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.11  E-value=0.041  Score=43.59  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=23.3

Q ss_pred             cccCceEEEcCCCCCCCCCCeEEEEee
Q 020242           66 TASGPHYFICSFPGHCLGGQKLAINVS   92 (329)
Q Consensus        66 ~~~G~~yFiCs~~~HC~~GmKl~I~V~   92 (329)
                      +++|.|-|+|++++|= .||+..|.|.
T Consensus       103 ~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_         103 KEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             CTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             CCCceEEEEECCCCcc-cccEEEEEEC
Confidence            4679999999999997 8999999884

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.31  E-value=0.031  Score=45.31  Aligned_cols=75  Identities=12%  Similarity=0.102  Sum_probs=46.9

Q ss_pred             ceeeCCEEEEEE---cC------CCCcEEEeCcccccCCCCCCC-Cccc--CC--CCc--------------EEEecccC
Q 020242           18 SFFFFTFSVFNF---AA------GNHDVTRVTQSSFNACNTTSP-LSRT--TN--SPA--------------SVTLTASG   69 (329)
Q Consensus        18 tf~vGD~LvF~y---~~------~~H~V~~V~~~~y~~C~~~~~-~~~~--~~--G~~--------------~v~L~~~G   69 (329)
                      .+++||.|-+.=   ..      ....+++|++++|++|+.... ...+  +.  +..              -+.+. +|
T Consensus        25 ~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF~-pG  103 (141)
T d1ikop_          25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQ-KN  103 (141)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCC-TT
T ss_pred             EeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeeec-CC
Confidence            557789998753   22      135688999999999997542 2111  11  111              12333 45


Q ss_pred             -ceEEEcCCCC-----------CCC-CCCeEEEEeec
Q 020242           70 -PHYFICSFPG-----------HCL-GGQKLAINVSA   93 (329)
Q Consensus        70 -~~yFiCs~~~-----------HC~-~GmKl~I~V~~   93 (329)
                       .||||++-.+           -|. ..|||.|.|..
T Consensus       104 ~~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V~~  140 (141)
T d1ikop_         104 KDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQ  140 (141)
T ss_dssp             EEEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred             CeEEEEEcCCCCCCccccccCCccCCCccEEEEEeCC
Confidence             5778887533           285 58999999963

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.65  E-value=0.075  Score=42.75  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=46.7

Q ss_pred             CceeeCCEEEEEEc---C-------CCCcEEEeCcccccCCCCCCCC-ccc-------CCCCcE--EEecc---------
Q 020242           17 FSFFFFTFSVFNFA---A-------GNHDVTRVTQSSFNACNTTSPL-SRT-------TNSPAS--VTLTA---------   67 (329)
Q Consensus        17 ~tf~vGD~LvF~y~---~-------~~H~V~~V~~~~y~~C~~~~~~-~~~-------~~G~~~--v~L~~---------   67 (329)
                      +.+++||.|-+.=.   .       ....+++|++++|++|+..+.. ..+       ..|...  +.+.+         
T Consensus        23 i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~E  102 (138)
T d1shxa1          23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCee
Confidence            36788999987532   1       1466899999999999976432 111       122222  22221         


Q ss_pred             --cC-ceEEEcCC---CCCCCCCCeEEEEeec
Q 020242           68 --SG-PHYFICSF---PGHCLGGQKLAINVSA   93 (329)
Q Consensus        68 --~G-~~yFiCs~---~~HC~~GmKl~I~V~~   93 (329)
                        +| .||||++-   .++|. .|||.|.|-.
T Consensus       103 F~pG~~YY~ISTs~g~~~~~~-~mrLkv~V~p  133 (138)
T d1shxa1         103 FRPGREYFYISSAIPDNGRRS-CLKLKVFVRP  133 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSC-CCEEEEEECC
T ss_pred             ecCCCEEEEEEeeCCCCCCcc-ceEeEEEEeC
Confidence              45 57788664   34443 4999999964

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.42  E-value=0.087  Score=42.61  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             CeeeecCEEEEeeCCC-----CceEEE-E-ccccccCCCCCCCcccCCCCCcEEEeCCCCcEEEEcCCCC-----CCCCC
Q 020242          190 NNFSVGDILVFDYPAR-----VHDVVE-V-TKAAYDSCNSSSTISKSTNPPTRITLGTAGEHYFFCTFPG-----HCSAG  257 (329)
Q Consensus       190 ~~f~vGD~LvF~y~~~-----~h~V~~-V-~~~~y~~C~~~~~i~~~~~G~~~v~L~~~G~~YFic~~~~-----HC~~G  257 (329)
                      ++++.||.|++++.+.     .|.... . ...+-...  ...|....+-...|+++++|.+||-|....     |=..|
T Consensus        64 i~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~--~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~~~G  141 (153)
T d1mzya1          64 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGG--LTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSG  141 (153)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGG--GCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHTT
T ss_pred             EEEeCCCEEEEEEEcCCCCceEccCccccCCcCCCCCc--cccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHHhCC
Confidence            6799999999998642     244332 1 11111100  011211111124678899999999998654     55689


Q ss_pred             CeEEEEecCCC
Q 020242          258 QKLAVNVTGGS  268 (329)
Q Consensus       258 mKl~I~V~~~~  268 (329)
                      |-..|.|....
T Consensus       142 m~G~~iV~P~d  152 (153)
T d1mzya1         142 MAGCIMVLPRD  152 (153)
T ss_dssp             CEEEEEEECTT
T ss_pred             CEEEEEEecCC
Confidence            99999886543

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=90.25  E-value=0.085  Score=42.91  Aligned_cols=76  Identities=12%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             CeeeecCEEEEeeCCC-----CceEEEEccccccCCCCCCCcccCCCC---CcEEEeCCCCcEEEEcCCC----CCCCCC
Q 020242          190 NNFSVGDILVFDYPAR-----VHDVVEVTKAAYDSCNSSSTISKSTNP---PTRITLGTAGEHYFFCTFP----GHCSAG  257 (329)
Q Consensus       190 ~~f~vGD~LvF~y~~~-----~h~V~~V~~~~y~~C~~~~~i~~~~~G---~~~v~L~~~G~~YFic~~~----~HC~~G  257 (329)
                      ++++.||+|++++.+.     .|.+..-...+-+.   .........|   ...|+++++|.+||-|...    .|=..|
T Consensus        66 I~v~~GD~V~i~l~N~~~~~~~Hg~~~h~~~~~~~---~~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~G  142 (157)
T d2bw4a1          66 MVVHENDYVELRLINPDTNTLLHNIDFHAATGALG---GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG  142 (157)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred             EEEECCcEEEEEEEeCCCCcceEeeeecccCCCcC---CcceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHhCC
Confidence            7899999999998642     24443210000000   0000112233   2467889999999999853    355789


Q ss_pred             CeEEEEecCCC
Q 020242          258 QKLAVNVTGGS  268 (329)
Q Consensus       258 mKl~I~V~~~~  268 (329)
                      |-..|.|....
T Consensus       143 l~G~~iV~p~e  153 (157)
T d2bw4a1         143 MNGAIMVLPRD  153 (157)
T ss_dssp             CEEEEEEECTB
T ss_pred             CEEEEEEeCCC
Confidence            99999997654

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=87.68  E-value=0.72  Score=35.93  Aligned_cols=78  Identities=9%  Similarity=0.014  Sum_probs=47.7

Q ss_pred             CCCeeeecCEEEEeeCCC--------CceEEE----Eccc-cccCCCCCCCcccCCCCC---cEEEeC-CCCcEEEEcCC
Q 020242          188 RNNNFSVGDILVFDYPAR--------VHDVVE----VTKA-AYDSCNSSSTISKSTNPP---TRITLG-TAGEHYFFCTF  250 (329)
Q Consensus       188 ~~~~f~vGD~LvF~y~~~--------~h~V~~----V~~~-~y~~C~~~~~i~~~~~G~---~~v~L~-~~G~~YFic~~  250 (329)
                      ..++++.||.|++++.+.        .|++..    +... ..+....... .....|.   ..+++. ++|.+||-|..
T Consensus        34 PtI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s~-~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~  112 (130)
T d1gyca1          34 PLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQ-CPIASGHSFLYDFHVPDQAGTFWYHSHL  112 (130)
T ss_dssp             CCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTB-CCBCTTEEEEEEEECSSCCEEEEEEECS
T ss_pred             CeEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCcccccc-CCCCCCCeEEEEEECCCCCceeEEecCC
Confidence            347899999999998643        233432    1111 1111111100 0112232   356664 69999999999


Q ss_pred             CCCCCCCCeEEEEecC
Q 020242          251 PGHCSAGQKLAVNVTG  266 (329)
Q Consensus       251 ~~HC~~GmKl~I~V~~  266 (329)
                      ..|=..||-..|.|..
T Consensus       113 ~~~~~~Gl~G~liV~~  128 (130)
T d1gyca1         113 STQYCDGLRGPFVVYD  128 (130)
T ss_dssp             TTGGGGTCEEEEEEEC
T ss_pred             HHHHhCCCEEEEEEeC
Confidence            9999999999998864

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=85.81  E-value=0.76  Score=35.79  Aligned_cols=32  Identities=9%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             EEEec-ccCceEEEcCCCCCCCCCCeEEEEeec
Q 020242           62 SVTLT-ASGPHYFICSFPGHCLGGQKLAINVSA   93 (329)
Q Consensus        62 ~v~L~-~~G~~yFiCs~~~HC~~GmKl~I~V~~   93 (329)
                      .+.+. ++|.+||-|-...|=..||...|.|..
T Consensus        96 ~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~  128 (130)
T d1gyca1          96 DFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYD  128 (130)
T ss_dssp             EEECSSCCEEEEEEECSTTGGGGTCEEEEEEEC
T ss_pred             EEECCCCCceeEEecCCHHHHhCCCEEEEEEeC
Confidence            46654 699999999999999999999988863

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.68  E-value=0.26  Score=39.59  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             ceeeCCEEEEEEcCC-----CCcEEE-e-CcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCCC-----CCC
Q 020242           18 SFFFFTFSVFNFAAG-----NHDVTR-V-TQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFPG-----HCL   82 (329)
Q Consensus        18 tf~vGD~LvF~y~~~-----~H~V~~-V-~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~~-----HC~   82 (329)
                      +++.||+|++++.+.     .|.... . ...+...     .......|.   ..++++++|.+||.|....     |=.
T Consensus        65 ~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~-----~~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~~  139 (153)
T d1mzya1          65 IVHEGDYVELTLINPPENTMPHNIDFHAATGALGGG-----GLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV  139 (153)
T ss_dssp             EEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGG-----GGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred             EEeCCCEEEEEEEcCCCCceEccCccccCCcCCCCC-----ccccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHHh
Confidence            689999999999752     133322 1 1111111     001122333   3678899999999998654     557


Q ss_pred             CCCeEEEEeec
Q 020242           83 GGQKLAINVSA   93 (329)
Q Consensus        83 ~GmKl~I~V~~   93 (329)
                      .||-..|.|..
T Consensus       140 ~Gm~G~~iV~P  150 (153)
T d1mzya1         140 SGMAGCIMVLP  150 (153)
T ss_dssp             TTCEEEEEEEC
T ss_pred             CCCEEEEEEec
Confidence            89988888864

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=85.22  E-value=0.45  Score=38.50  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 020242          235 RITLGTAGEHYFFCTFPGHCSAGQKLAVNVTGGS  268 (329)
Q Consensus       235 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~~  268 (329)
                      .+..+++|++||-|....|=..||-.+|.|....
T Consensus       126 ~f~~~~~Gt~wYH~H~~~q~~~Gl~G~~iV~~p~  159 (162)
T d2q9oa1         126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA  159 (162)
T ss_dssp             EEECCSCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred             eecCCCCEEEEeecCCHHHHhCCCEEEEEECCCC
Confidence            5678899999999999999999999999997543

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=85.09  E-value=0.5  Score=38.19  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=29.4

Q ss_pred             EEEecccCceEEEcCCCCCCCCCCeEEEEeecC
Q 020242           62 SVTLTASGPHYFICSFPGHCLGGQKLAINVSAR   94 (329)
Q Consensus        62 ~v~L~~~G~~yFiCs~~~HC~~GmKl~I~V~~~   94 (329)
                      .+..+..|++||-|-...|=..||-..|.|...
T Consensus       126 ~f~~~~~Gt~wYH~H~~~q~~~Gl~G~~iV~~p  158 (162)
T d2q9oa1         126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGP  158 (162)
T ss_dssp             EEECCSCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred             eecCCCCEEEEeecCCHHHHhCCCEEEEEECCC
Confidence            577888999999999999999999999999753

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=83.27  E-value=0.17  Score=41.07  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=44.3

Q ss_pred             CceeeCCEEEEEEcCCC-----CcEEEeCcccccCCCCCCCCcccCCCC---cEEEecccCceEEEcCCC----CCCCCC
Q 020242           17 FSFFFFTFSVFNFAAGN-----HDVTRVTQSSFNACNTTSPLSRTTNSP---ASVTLTASGPHYFICSFP----GHCLGG   84 (329)
Q Consensus        17 ~tf~vGD~LvF~y~~~~-----H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~~G~~yFiCs~~----~HC~~G   84 (329)
                      ++++.||+|++++.+..     |.+..=...+-. ..  ........|.   ..++++++|.+||.|-..    .|=..|
T Consensus        66 I~v~~GD~V~i~l~N~~~~~~~Hg~~~h~~~~~~-~~--~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~G  142 (157)
T d2bw4a1          66 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL-GG--GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG  142 (157)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG-GG--GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred             EEEECCcEEEEEEEeCCCCcceEeeeecccCCCc-CC--cceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHhCC
Confidence            47899999999997522     333221000000 00  0001122233   367889999999999753    355789


Q ss_pred             CeEEEEeecC
Q 020242           85 QKLAINVSAR   94 (329)
Q Consensus        85 mKl~I~V~~~   94 (329)
                      |...|.|...
T Consensus       143 l~G~~iV~p~  152 (157)
T d2bw4a1         143 MNGAIMVLPR  152 (157)
T ss_dssp             CEEEEEEECT
T ss_pred             CEEEEEEeCC
Confidence            9988888643

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=82.39  E-value=0.63  Score=36.43  Aligned_cols=78  Identities=10%  Similarity=0.065  Sum_probs=46.2

Q ss_pred             CCeeeecCEEEEeeCCCC--------ceEEEEccccccCCCCCCCc-----ccCCCCCc---EEEe-CCCCcEEEEcCCC
Q 020242          189 NNNFSVGDILVFDYPARV--------HDVVEVTKAAYDSCNSSSTI-----SKSTNPPT---RITL-GTAGEHYFFCTFP  251 (329)
Q Consensus       189 ~~~f~vGD~LvF~y~~~~--------h~V~~V~~~~y~~C~~~~~i-----~~~~~G~~---~v~L-~~~G~~YFic~~~  251 (329)
                      -++++.||+|.+++.+..        +++..= .-.+..+...+.+     .....|..   .+++ +.+|++||-|...
T Consensus        35 ~I~v~~GD~v~v~l~N~l~~~~~~~~tsiH~H-Gl~~~~~~~~dgv~g~~~~~I~PG~~~~y~~~~~~~~Gt~wYH~H~~  113 (131)
T d1hfua1          35 LIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH-GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFG  113 (131)
T ss_dssp             EEEEETTCCEEEEEEECCCCTTSCCSBCEEEE-TCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECST
T ss_pred             eEEEECCCEEEEEEEECCCCccccccceEEeC-CcccCCCCCCCCCcccccceECCCCeEEEEEeCCCCcceEEEecCCH
Confidence            378999999998876431        333210 0000111111111     11233432   3443 4699999999999


Q ss_pred             CCCCCCCeEEEEecCC
Q 020242          252 GHCSAGQKLAVNVTGG  267 (329)
Q Consensus       252 ~HC~~GmKl~I~V~~~  267 (329)
                      .|=..||-..|.|...
T Consensus       114 ~q~~~Gl~G~liV~~~  129 (131)
T d1hfua1         114 TQYCDGLRGPMVIYDD  129 (131)
T ss_dssp             TGGGGTCEEEEEEECT
T ss_pred             HHHhCCCEEEEEEcCC
Confidence            9999999999998753

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=80.92  E-value=0.93  Score=35.35  Aligned_cols=33  Identities=12%  Similarity=0.216  Sum_probs=27.1

Q ss_pred             EEEe-cccCceEEEcCCCCCCCCCCeEEEEeecC
Q 020242           62 SVTL-TASGPHYFICSFPGHCLGGQKLAINVSAR   94 (329)
Q Consensus        62 ~v~L-~~~G~~yFiCs~~~HC~~GmKl~I~V~~~   94 (329)
                      .+.+ +..|++||-|-...|=..||...|.|...
T Consensus        96 ~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~  129 (131)
T d1hfua1          96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDD  129 (131)
T ss_dssp             EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             EEeCCCCcceEEEecCCHHHHhCCCEEEEEEcCC
Confidence            3443 46899999999999999999999998753