Citrus Sinensis ID: 020253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MSDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
cccccEEEEEEEEEEEEEEccccccccEEEccEEEccEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEccccccEEEEccEEccccccccccEEEEEEcEEccccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccEEEEHHHHHHHcccHHHHHHccccccccccccEEEccccHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHcccccc
cccccEEEEEEccEEEEEEEcccccEEEEcccEEEcccEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEcccccEEEEEEEEEEccccccccccEEcccccccccEEEEccEEEEEEEEEEEEEEccEcccccccccccHcHHHHHHHHHHcccccEEEEEEcccEEHHHHHHHHcccHHHHHHHcccccHccccEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHccccc
msdsayrvdtTSRLAQWRIDNlascsyrksdpfkigkwnwHLSLEKNRMLFVKLYpevsnltrdnppiASFIIRVVSSvgdrkalshpeitdrqlknnddfVWAIevpltgkfiidvefldlkiapsdggepcsiwaegitqkrsNATALASLGRMLtegihtdiiinasngstgaHRAVLAARSpvfrsmfshdlkekelstidipdmSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADkydicdlkeaCHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
msdsayrvdttsrlaqwridnlascsyrksdpfkIGKWNWHLSLEKNRMLFVKLYPEVsnltrdnppIASFIIRVVSSVGDRKAlshpeitdrqlknndDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
MSDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
**********TSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAW***
*SDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGD*************LKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSI***************ASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSH*L*E**LSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
**********TSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
***SAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWK**
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MSDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
Q680K8329 BTB/POZ domain-containing yes no 1.0 0.996 0.759 1e-152
Q9XHZ8326 BTB/POZ domain-containing no no 0.972 0.978 0.551 1e-103
Q6YCH2370 TD and POZ domain-contain yes no 0.557 0.494 0.285 4e-16
Q717B3365 TD and POZ domain-contain no no 0.527 0.473 0.301 9e-16
Q94420395 Protein maternal effect l yes no 0.414 0.344 0.372 1e-15
Q717B4365 TD and POZ domain-contain no no 0.515 0.463 0.314 8e-15
Q9LQ95207 BTB/POZ domain-containing no no 0.509 0.806 0.298 8e-14
Q6YCH1340 TD and POZ domain-contain no no 0.417 0.402 0.311 1e-13
P34371410 BTB and MATH domain-conta no no 0.512 0.409 0.304 6e-13
Q717B2364 TD and POZ domain-contain no no 0.414 0.373 0.302 6e-13
>sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1 Back     alignment and function desciption
 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/329 (75%), Positives = 293/329 (89%), Gaps = 1/329 (0%)

Query: 1   MSDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLF-VKLYPEVS 59
           M+DSAYRVDT SRLAQWRI NL+S +YRKSDPFK+G WNWHLS+EK++ML  VKLYPEVS
Sbjct: 1   MTDSAYRVDTISRLAQWRIHNLSSSTYRKSDPFKMGLWNWHLSVEKSKMLLNVKLYPEVS 60

Query: 60  NLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEF 119
           NLTR+NPP+ASF +RVVSS G+RKALSHPE+ D+++K N+DF+W IEVPLTGK IIDVEF
Sbjct: 61  NLTRENPPVASFALRVVSSTGERKALSHPEVIDKRIKTNEDFIWTIEVPLTGKIIIDVEF 120

Query: 120 LDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRA 179
           LDLK+   D GE  SIWA G T+ +S  TA+ SLGRMLTE I+TDI INAS+GS GAHRA
Sbjct: 121 LDLKVLSQDSGELYSIWANGSTENQSQVTAVTSLGRMLTESIYTDITINASDGSIGAHRA 180

Query: 180 VLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLR 239
           VLAARSPVFRSMF HDLKEKELS I++ DM +DACQAFLSYIYGNI++E+FL HRLALL+
Sbjct: 181 VLAARSPVFRSMFLHDLKEKELSEINVLDMPLDACQAFLSYIYGNIQNEDFLIHRLALLQ 240

Query: 240 AADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIR 299
           AA+KYDI DLKEACH SL++DIDTKNVLERLQNAYLYQLP+LK+SCMRYLVKFGKIF+IR
Sbjct: 241 AAEKYDIADLKEACHLSLLDDIDTKNVLERLQNAYLYQLPELKASCMRYLVKFGKIFEIR 300

Query: 300 DDFSVFLQCADRELIAEVFHEVLGAWKGF 328
           D+F++F+QCADR+LI+E+FHEVL  WKGF
Sbjct: 301 DEFNIFMQCADRDLISEIFHEVLSTWKGF 329
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1 Back     alignment and function description
>sp|Q6YCH2|TDPZ4_MOUSE TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4 PE=2 SV=2 Back     alignment and function description
>sp|Q717B3|TDPZ1_MOUSE TD and POZ domain-containing protein 1 OS=Mus musculus GN=Tdpoz1 PE=2 SV=2 Back     alignment and function description
>sp|Q94420|MEL26_CAEEL Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2 Back     alignment and function description
>sp|Q717B4|TDPZ3_MOUSE TD and POZ domain-containing protein 3 OS=Mus musculus GN=Tdpoz3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LQ95|Y1164_ARATH BTB/POZ domain-containing protein At1g01640 OS=Arabidopsis thaliana GN=At1g01640 PE=1 SV=1 Back     alignment and function description
>sp|Q6YCH1|TDPZ5_MOUSE TD and POZ domain-containing protein 5 OS=Mus musculus GN=Tdpoz5 PE=2 SV=1 Back     alignment and function description
>sp|P34371|BAT42_CAEEL BTB and MATH domain-containing protein 42 OS=Caenorhabditis elegans GN=bath-42 PE=1 SV=1 Back     alignment and function description
>sp|Q717B2|TDPZ2_MOUSE TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
225462070328 PREDICTED: BTB/POZ domain-containing pro 1.0 1.0 0.859 1e-168
224056863330 predicted protein [Populus trichocarpa] 1.0 0.993 0.839 1e-162
356566311328 PREDICTED: BTB/POZ domain-containing pro 1.0 1.0 0.826 1e-162
356527187328 PREDICTED: BTB/POZ domain-containing pro 1.0 1.0 0.814 1e-160
449444010327 PREDICTED: BTB/POZ domain-containing pro 0.996 1.0 0.798 1e-158
388522999328 unknown [Lotus japonicus] 1.0 1.0 0.798 1e-156
15222771329 BTB/POZ domain-containing protein [Arabi 1.0 0.996 0.759 1e-151
357460301330 Speckle-type POZ protein-like A [Medicag 1.0 0.993 0.778 1e-150
297853292329 BTB/POZ domain-containing protein [Arabi 1.0 0.996 0.759 1e-150
220702723332 BTB/POZ domain-containing protein [Mirab 0.987 0.975 0.733 1e-144
>gi|225462070|ref|XP_002276318.1| PREDICTED: BTB/POZ domain-containing protein At1g55760 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/328 (85%), Positives = 307/328 (93%)

Query: 1   MSDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSN 60
           MSDSAYRV+TTSRLAQWRIDNLASC+YRKSDPFKIGKWNWHLS+EKNR L VKLYPE SN
Sbjct: 1   MSDSAYRVETTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSIEKNRTLSVKLYPETSN 60

Query: 61  LTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFL 120
           LTRDNPPIASFIIRV+SSVGDRKAL HPEITD+QLKNNDDFVWAIEVPLTGKFI+DVEFL
Sbjct: 61  LTRDNPPIASFIIRVLSSVGDRKALVHPEITDKQLKNNDDFVWAIEVPLTGKFIVDVEFL 120

Query: 121 DLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAV 180
           DLK +  +GGEPCSIWAEG  QKRS+ TALASLGRML+E IHTDIIINAS+GS GAHRAV
Sbjct: 121 DLKTSSPNGGEPCSIWAEGFAQKRSSTTALASLGRMLSENIHTDIIINASDGSIGAHRAV 180

Query: 181 LAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRA 240
           LA+ SPVFRSMFSHDLKEKELST++I DMSI+ACQAFL+YIYGNI+H+EFL HRL LLRA
Sbjct: 181 LASISPVFRSMFSHDLKEKELSTVNISDMSIEACQAFLNYIYGNIQHDEFLIHRLPLLRA 240

Query: 241 ADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRD 300
           ADKYDI DLKEACH+SL+EDIDTKNVLERLQNA LYQL KLK++C+RYLVKFGKIFDIRD
Sbjct: 241 ADKYDIEDLKEACHESLLEDIDTKNVLERLQNASLYQLSKLKTACLRYLVKFGKIFDIRD 300

Query: 301 DFSVFLQCADRELIAEVFHEVLGAWKGF 328
           DF+ FLQCADR+LIAEVFHEVL AWKGF
Sbjct: 301 DFNAFLQCADRDLIAEVFHEVLTAWKGF 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056863|ref|XP_002299061.1| predicted protein [Populus trichocarpa] gi|222846319|gb|EEE83866.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356566311|ref|XP_003551376.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Glycine max] Back     alignment and taxonomy information
>gi|356527187|ref|XP_003532194.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Glycine max] Back     alignment and taxonomy information
>gi|449444010|ref|XP_004139768.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Cucumis sativus] gi|449529700|ref|XP_004171836.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388522999|gb|AFK49561.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|15222771|ref|NP_175972.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75271590|sp|Q680K8.1|Y1576_ARATH RecName: Full=BTB/POZ domain-containing protein At1g55760 gi|51969392|dbj|BAD43388.1| unknown protein [Arabidopsis thaliana] gi|51969860|dbj|BAD43622.1| unknown protein [Arabidopsis thaliana] gi|63147370|gb|AAY34158.1| At1g55760 [Arabidopsis thaliana] gi|332195173|gb|AEE33294.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357460301|ref|XP_003600432.1| Speckle-type POZ protein-like A [Medicago truncatula] gi|355489480|gb|AES70683.1| Speckle-type POZ protein-like A [Medicago truncatula] Back     alignment and taxonomy information
>gi|297853292|ref|XP_002894527.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340369|gb|EFH70786.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|220702723|gb|ACL81160.1| BTB/POZ domain-containing protein [Mirabilis jalapa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
TAIR|locus:2020522329 AT1G55760 "AT1G55760" [Arabido 1.0 0.996 0.759 1.3e-137
TAIR|locus:2036962326 AT1G21780 [Arabidopsis thalian 0.984 0.990 0.550 6.8e-95
MGI|MGI:3027904370 Tdpoz4 "TD and POZ domain cont 0.557 0.494 0.285 2.5e-18
TAIR|locus:2198140207 AT1G01640 [Arabidopsis thalian 0.533 0.845 0.302 2.7e-16
MGI|MGI:3027903365 Tdpoz3 "TD and POZ domain cont 0.512 0.460 0.318 5.2e-16
WB|WBGene00003209395 mel-26 [Caenorhabditis elegans 0.506 0.420 0.333 5.8e-15
UNIPROTKB|Q94420395 mel-26 "Protein maternal effec 0.506 0.420 0.333 5.8e-15
UNIPROTKB|P34371410 bath-42 "BTB and MATH domain-c 0.506 0.404 0.307 5.9e-13
TAIR|locus:2166066224 AT5G48510 [Arabidopsis thalian 0.5 0.732 0.275 2.7e-12
TAIR|locus:2061873209 AT2G40450 [Arabidopsis thalian 0.405 0.636 0.312 2.7e-12
TAIR|locus:2020522 AT1G55760 "AT1G55760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
 Identities = 250/329 (75%), Positives = 293/329 (89%)

Query:     1 MSDSAYRVDTTSRLAQWRIDNLASCSYRKSDPFKIGKWNWHLSLEKNRMLF-VKLYPEVS 59
             M+DSAYRVDT SRLAQWRI NL+S +YRKSDPFK+G WNWHLS+EK++ML  VKLYPEVS
Sbjct:     1 MTDSAYRVDTISRLAQWRIHNLSSSTYRKSDPFKMGLWNWHLSVEKSKMLLNVKLYPEVS 60

Query:    60 NLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFVWAIEVPLTGKFIIDVEF 119
             NLTR+NPP+ASF +RVVSS G+RKALSHPE+ D+++K N+DF+W IEVPLTGK IIDVEF
Sbjct:    61 NLTRENPPVASFALRVVSSTGERKALSHPEVIDKRIKTNEDFIWTIEVPLTGKIIIDVEF 120

Query:   120 LDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRA 179
             LDLK+   D GE  SIWA G T+ +S  TA+ SLGRMLTE I+TDI INAS+GS GAHRA
Sbjct:   121 LDLKVLSQDSGELYSIWANGSTENQSQVTAVTSLGRMLTESIYTDITINASDGSIGAHRA 180

Query:   180 VLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLR 239
             VLAARSPVFRSMF HDLKEKELS I++ DM +DACQAFLSYIYGNI++E+FL HRLALL+
Sbjct:   181 VLAARSPVFRSMFLHDLKEKELSEINVLDMPLDACQAFLSYIYGNIQNEDFLIHRLALLQ 240

Query:   240 AADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIR 299
             AA+KYDI DLKEACH SL++DIDTKNVLERLQNAYLYQLP+LK+SCMRYLVKFGKIF+IR
Sbjct:   241 AAEKYDIADLKEACHLSLLDDIDTKNVLERLQNAYLYQLPELKASCMRYLVKFGKIFEIR 300

Query:   300 DDFSVFLQCADRELIAEVFHEVLGAWKGF 328
             D+F++F+QCADR+LI+E+FHEVL  WKGF
Sbjct:   301 DEFNIFMQCADRDLISEIFHEVLSTWKGF 329
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2036962 AT1G21780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:3027904 Tdpoz4 "TD and POZ domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2198140 AT1G01640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:3027903 Tdpoz3 "TD and POZ domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00003209 mel-26 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q94420 mel-26 "Protein maternal effect lethal 26" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34371 bath-42 "BTB and MATH domain-containing protein 42" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2166066 AT5G48510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061873 AT2G40450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q680K8Y1576_ARATHNo assigned EC number0.75981.00.9969yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033478001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (328 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
pfam00651101 pfam00651, BTB, BTB/POZ domain 9e-18
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 9e-17
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 6e-05
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 0.003
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 76.9 bits (190), Expect = 9e-18
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 153 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 212
           L  +   G   D+ +   +    AH+AVLAA SP F+++F+ + +      I + D+S +
Sbjct: 1   LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKE----VEITLEDVSPE 56

Query: 213 ACQAFLSYIYG---NIEHEEFLTHRLALLRAADKYDICDLKEACHDSLV 258
             +A L +IY     I  E        LL  ADK  I  L + C + L+
Sbjct: 57  DFEALLEFIYTGKLEITEEN----VDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
PHA02713 557 hypothetical protein; Provisional 99.96
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.95
PHA02790 480 Kelch-like protein; Provisional 99.95
PHA03098 534 kelch-like protein; Provisional 99.94
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.93
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.81
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.81
KOG4591280 consensus Uncharacterized conserved protein, conta 99.81
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.78
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.75
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.74
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.73
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.68
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.67
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.65
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.64
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.62
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.61
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.59
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.58
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.54
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.51
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.5
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 99.48
smart0006195 MATH meprin and TRAF homology. 99.37
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.31
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.26
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.73
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 98.58
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.3
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.25
KOG2838401 consensus Uncharacterized conserved protein, conta 98.24
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 98.24
KOG0511516 consensus Ankyrin repeat protein [General function 98.17
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.87
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 97.54
KOG3473112 consensus RNA polymerase II transcription elongati 97.12
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.06
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 96.99
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.85
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.73
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.24
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 95.99
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 95.77
KOG2714 465 consensus SETA binding protein SB1 and related pro 95.43
KOG1778 319 consensus CREB binding protein/P300 and related TA 95.37
KOG0511 516 consensus Ankyrin repeat protein [General function 95.31
KOG2715210 consensus Uncharacterized conserved protein, conta 91.47
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 89.39
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 86.87
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 85.59
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.96  E-value=1.6e-28  Score=236.70  Aligned_cols=165  Identities=19%  Similarity=0.333  Sum_probs=151.6

Q ss_pred             CChhHHHHHHHHHhcCCCcccEEEEeC-CeEEehhHHHHhccCHHHHHhccCcccccC-cceEEcCCCCHHHHHHHhhhh
Q 020253          144 RSNATALASLGRMLTEGIHTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHDLKEKE-LSTIDIPDMSIDACQAFLSYI  221 (328)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~Dv~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~-~~~v~l~~~~~~~f~~ll~~i  221 (328)
                      .+...+++.+.+|+.++.++||+|.++ |+.|+|||.|||++|+||++||.++|+|.. +++|+|+++++++|+.+|+|+
T Consensus         7 ~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~   86 (557)
T PHA02713          7 KHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYL   86 (557)
T ss_pred             hhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHh
Confidence            345678899999999999999999998 899999999999999999999999999874 789999999999999999999


Q ss_pred             cCCccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhcccc
Q 020253          222 YGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRD  300 (328)
Q Consensus       222 Y~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~  300 (328)
                      ||+. ++  .+++.+||.+|+.|+++.|++.|++||.+.++++||+.++.+|..+.+..|.+.|.+|+. ||.++.+   
T Consensus        87 Yt~~-i~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~---  160 (557)
T PHA02713         87 YNRH-IS--SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT---  160 (557)
T ss_pred             cCCC-CC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC---
Confidence            9985 33  389999999999999999999999999999999999999999999999999999999999 9999998   


Q ss_pred             chHHHHhhCcHHHHH
Q 020253          301 DFSVFLQCADRELIA  315 (328)
Q Consensus       301 ~~~~~~~~~~~~l~~  315 (328)
                       .++|++++..++..
T Consensus       161 -~~ef~~L~~~~l~~  174 (557)
T PHA02713        161 -TDAFKKTVFEILFD  174 (557)
T ss_pred             -ChhhhhCCHHHHHH
Confidence             78888777555543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-12
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 6e-12
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 4e-07
4ap2_A297 Crystal Structure Of The Human Klhl11-cul3 Complex 5e-04
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 6e-04
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 7e-04
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 153 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 212
           LG +      TD  +  +     AH+A+LAARSPVF +MF H+++E + + ++I D+  +
Sbjct: 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 224
Query: 213 ACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQ 271
             +  + +IY G   + + +     LL AADKY +  LK  C D+L  ++  +N  E L 
Sbjct: 225 VFKEMMCFIYTGKAPNLDKMADD--LLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282
Query: 272 NAYLYQLPKLKSSCMRYL 289
            A L+   +LK+  + ++
Sbjct: 283 LADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 Back     alignment and structure
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-40
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 3e-39
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-38
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 4e-25
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-23
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 5e-21
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 7e-19
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-18
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 3e-18
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 5e-17
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 9e-17
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-16
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-16
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-16
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 5e-16
2vpk_A116 Myoneurin; transcription regulation, transcription 3e-15
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-13
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-13
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 3e-12
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
 Score =  138 bits (350), Expect = 2e-40
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 150 LASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDM 209
              LG +      TD  +  +     AH+A+LAARSPVF +MF H+++E + + ++I D+
Sbjct: 22  ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV 81

Query: 210 SIDACQAFLSYIY-GNIEH-EEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVL 267
             +  +  + +IY G   + ++       LL AADKY +  LK  C D+L  ++  +N  
Sbjct: 82  EPEVFKEMMCFIYTGKAPNLDKMADD---LLAAADKYALERLKVMCEDALCSNLSVENAA 138

Query: 268 ERLQNAYLYQLPKLKSSCMRYLVK 291
           E L  A L+   +LK+  + ++  
Sbjct: 139 EILILADLHSADQLKTQAVDFINY 162
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.97
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.92
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.92
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.91
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.91
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.9
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.9
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.9
2vpk_A116 Myoneurin; transcription regulation, transcription 99.9
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.9
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.89
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.89
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.89
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.89
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.86
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.85
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.79
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.77
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.74
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.72
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.72
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.69
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.68
1d00_A168 Tumor necrosis factor receptor associated protein 99.67
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.66
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.53
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.45
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.25
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.04
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.96
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.49
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.45
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.45
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.44
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.2
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.04
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.39
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 97.23
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.88
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.44
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.1
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 94.28
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 94.21
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 85.14
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=1.8e-50  Score=363.95  Aligned_cols=281  Identities=22%  Similarity=0.331  Sum_probs=222.5

Q ss_pred             eeccceeEEEEEccCCC-----CceeecCCceecCe---eEEEEEEeCC-----ceEEEEeecccccCCCCCcEEEEEEE
Q 020253            8 VDTTSRLAQWRIDNLAS-----CSYRKSDPFKIGKW---NWHLSLEKNR-----MLFVKLYPEVSNLTRDNPPIASFIIR   74 (328)
Q Consensus         8 ~~~~~~~~~w~I~~~~~-----g~~~~S~~F~vgg~---~W~l~~yp~g-----~~~vsL~~~~~~~~~~w~v~a~f~~~   74 (328)
                      .+++.|+|.|+|+||+.     |+++.|++|.+||+   +|+|.+||+|     ..++++|+...+ ..+|++.|+|+++
T Consensus         2 s~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~-~~~~~v~a~~~~~   80 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS-CPKSEVRAKFKFS   80 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEE-CCC-CEEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcC-CCCCcEEEEEEEE
Confidence            46788999999999973     67899999999996   9999999988     257888887654 3579999999999


Q ss_pred             EEecCCCCccccCccccccccccCCceeee-e-----------eceeccceeeeeeeeeeeee-cCCCCCcccccccccc
Q 020253           75 VVSSVGDRKALSHPEITDRQLKNNDDFVWA-I-----------EVPLTGKFIIDVEFLDLKIA-PSDGGEPCSIWAEGIT  141 (328)
Q Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~~~~~wg-~-----------~~~~~~~l~ve~~v~~~~i~-~~~~~~~~~~~~~~~~  141 (328)
                      ++|++|+........ ....|..+.+|||. +           +|++||+++|+|+|.+.+-. .+.|..      ....
T Consensus        81 l~~~~~~~~~~~~~~-~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~------~~~~  153 (312)
T 3hqi_A           81 ILNAKGEETKAMESQ-RAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQN------TMNM  153 (312)
T ss_dssp             EECTTSCEEEEEECS-SCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCC------CCSS
T ss_pred             EEeCCCCcccccccC-CceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccc------cccc
Confidence            999998764432211 11233334444443 1           28899999999999766422 222221      1123


Q ss_pred             ccCChhHHHHHHHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhh
Q 020253          142 QKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYI  221 (328)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~i  221 (328)
                      +.+|++.+.+++..+++++.++||+|.++|++|+|||.+||++||||++||.++++|+.+.+|.|+++++++|+.+|+|+
T Consensus       154 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~i  233 (312)
T 3hqi_A          154 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI  233 (312)
T ss_dssp             CCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhh
Confidence            45677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhc
Q 020253          222 YGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFD  297 (328)
Q Consensus       222 Y~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~  297 (328)
                      ||+..+.. .+++.+||.+|++|+++.|+..|+++|.+.++.+|++.++.+|++|++..|++.|++||. |+.++.+
T Consensus       234 Yt~~~~~~-~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~  309 (312)
T 3hqi_A          234 YTGKAPNL-DKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE  309 (312)
T ss_dssp             HHSCCTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred             cCCCCCCh-HHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            98743332 288999999999999999999999999999999999999999999999999999999999 8888765
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 5e-17
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 2e-14
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 5e-17
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 150 LASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDM 209
           L +L R+ +  I TD++I  S     AH+ VL A S +F S+F+  LK         P++
Sbjct: 13  LLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEI 72

Query: 210 SIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSL 257
           + +     L ++Y   +   E   + +A++  A    +  + + C   +
Sbjct: 73  NPEGFNILLDFMYTSRLNLRE--GNIMAVMATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.91
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.9
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.69
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.68
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.67
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.66
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.85
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.6
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.15
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.1
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.84
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.28
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.93
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.56
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 86.47
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.1e-25  Score=167.34  Aligned_cols=115  Identities=23%  Similarity=0.377  Sum_probs=105.8

Q ss_pred             cCChhHHHHHHHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhc
Q 020253          143 KRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY  222 (328)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY  222 (328)
                      +.+++.++..+..+++++.++|+++.++|++|+|||.+|+++|+||++||.+++.++.+..+.++++++++|+.+|+|+|
T Consensus         6 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Y   85 (122)
T d1r29a_           6 TRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMY   85 (122)
T ss_dssp             TTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhc
Confidence            34567899999999999999999999999999999999999999999999999999988888889999999999999999


Q ss_pred             CC-ccccccHHHHHHHHHhccccChHhHHHHHHHHHHh
Q 020253          223 GN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVE  259 (328)
Q Consensus       223 ~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  259 (328)
                      |+ ...+.  +++.+++.+|++|+++.|++.|++||..
T Consensus        86 tg~~~i~~--~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          86 TSRLNLRE--GNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HSCCCCCT--TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCeecCch--hhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            87 44444  7899999999999999999999999875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure