Citrus Sinensis ID: 020256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEcHHcHHHHHHHccHHHHHEEEcccccEEEEEEccccccccccEcccccccccccccccHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEccHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYyatkptwkivttdctcsissccfnffsnvtnqhsktlhFTNLTHIIKNKCTWVIKAKGNDEAIAHVKekkndnaqttsESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFvmsaipflpfvfwarddvktrnaGIELGLWVSLGYFVEALGlltsdagrASFISLFTVIVVplfdgmlgaiipahTWFGVLISALGVGmlecsgsppsvgdFLNFLSAIFFGIHMLRTerisrstkkenflpLLGYEVAYLSEKelfsydsfHAQKIFNFQFFRFAC
Flexible Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHvkekkndnaqttsesvqiitkrpfwkRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTerisrstkkenflpLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Low Complexity Region (SEG)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVttdctcsissccfnffsnvtnQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Disordered region (IsUnstruct)
*****************SMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIA****************VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFA*
Disordered Region (DISOPRED)
************ASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFS*****************IIKN*************************************************KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Disordered Region (DISEMBL)
*********KTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEK***********VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Disordered Region (DISPRO)
*Y*FSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVT***SKTLHFTNLTHIIKNKCTWVIKAKG***************************KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQFFRFAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
O29470	308	Uncharacterized transport	yes	no	0.472	0.503	0.289	1e-07

>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
           K++ +   L ++ +++ S  P++K A + M P +F  VRF ++ + FLPF+  W   D  
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96

Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWF 239
               G ++G+   LGY  + +GL  + A  A FI+   V++ P+   ++   +       
Sbjct: 97  ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVS 152

Query: 240 GVLISALGVGMLECSG-SPPSVGDFLNFLSAIFFGIHMLRTERISR 284
           GVL++ +G   L  SG S  ++GD L    A+FFG  +      SR
Sbjct: 153 GVLLAFVGFYFL--SGYSGFNIGDILMLFCALFFGAEIAMISHYSR 196

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
225456145	461	PREDICTED: uncharacterized protein LOC10	0.865	0.616	0.570	7e-85
225424254	460	PREDICTED: uncharacterized transporter A	0.579	0.413	0.752	3e-81
255570144	458	conserved hypothetical protein [Ricinus	0.579	0.414	0.731	7e-79
449449134	464	PREDICTED: uncharacterized protein LOC10	0.628	0.443	0.645	7e-74
449520623	452	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.628	0.455	0.635	6e-72
411113256	436	integral membrane protein [Triticum aest	0.628	0.472	0.606	2e-70
411113263	440	integral membrane protein [Triticum urar	0.628	0.468	0.601	6e-70
411113253	440	integral membrane protein [Triticum aest	0.628	0.468	0.601	7e-70
310656745	395	EamA domain-containing protein [Triticum	0.658	0.546	0.584	7e-70
226505558	447	integral membrane protein DUF6 containin	0.655	0.480	0.590	7e-70

>gi|225456145|ref|XP_002278448.1| PREDICTED: uncharacterized protein LOC100247357 [Vitis vinifera] gi|297734319|emb|CBI15566.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (819), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 212/303 (69%), Gaps = 19/303 (6%)

Query: 26  ATKPTWKIVTTDCTCSIS--SCCFNFFSNVTNQHSKTLHFTNLTHIIKN----------K 73
           AT P WK + T  +   S   CCF FFS   +  +K   F   + ++ N          K
Sbjct: 3   ATYPRWKTIATTSSSDSSTLPCCF-FFSTSPSPRTKRGRFATFSSLLLNPHEYHLGPAKK 61

Query: 74  CTWVIKAKGNDEAIAHVKEKKNDNAQTTSE-----SVQIITK-RPFWKRVLFASKKIRSI 127
              V   + + + ++ + +K    A+  ++     S+Q   K RP W+RVLFASKK++SI
Sbjct: 62  KKSVEIGRPHQQTVSIIHDKCISKAKVKAKFDWKKSIQKGAKSRPLWRRVLFASKKMKSI 121

Query: 128 FLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIE 187
            LLNV+TIVYAS+I ++K  E IM PA+F AVRF +SAIPFLPFVF AR DV+TRNAG+E
Sbjct: 122 ILLNVVTIVYASNIAVVKEVETIMDPAAFSAVRFAVSAIPFLPFVFRARGDVQTRNAGLE 181

Query: 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247
           LGLW+SLGY  EALGLLTS+AGRASF S  TVIVVPL D MLGAI+PA TWFGVL+S LG
Sbjct: 182 LGLWISLGYLAEALGLLTSEAGRASFFSFITVIVVPLLDSMLGAIVPARTWFGVLMSVLG 241

Query: 248 VGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKEL 307
           V MLECSGSPP+VGD LNFLSAIFFGIH+LRTE++SRSTKKENFLPLLGYEV  ++    
Sbjct: 242 VAMLECSGSPPNVGDLLNFLSAIFFGIHILRTEQLSRSTKKENFLPLLGYEVCVVALLST 301

Query: 308 FSY 310
           F Y
Sbjct: 302 FWY 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424254|ref|XP_002280818.1| PREDICTED: uncharacterized transporter AF_0788 [Vitis vinifera] gi|297737689|emb|CBI26890.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 167/190 (87%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           +R  W+R+LFAS+K+R I LLNV+T+VYAS+IP++K  E IM PA+F AVRFV+SAIPF+
Sbjct: 110 RRSLWRRILFASRKVRGIILLNVLTVVYASNIPVVKEVEAIMDPATFAAVRFVVSAIPFI 169

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFV  AR DV+TRNAGIELG WVSLGY +++LGLLTSDAGRASF+S+FTVIVVPL DGML
Sbjct: 170 PFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGLLTSDAGRASFLSMFTVIVVPLLDGML 229

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA +PAHTWFG L+S LGV MLE SGSPPSVGD LNFLSA+FFG+HMLRTE ISRST +E
Sbjct: 230 GATVPAHTWFGALMSILGVAMLESSGSPPSVGDLLNFLSAVFFGVHMLRTEHISRSTSRE 289

Query: 290 NFLPLLGYEV 299
           NFLPLLGYEV
Sbjct: 290 NFLPLLGYEV 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570144|ref|XP_002526034.1| conserved hypothetical protein [Ricinus communis] gi|223534681|gb|EEF36374.1| conserved hypothetical protein [Ricinus communis]

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 165/190 (86%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           ++  WKR++FAS K+RSI LLNVIT+VYAS+IP++K  E IM PA+F  VRF +SAIPF+
Sbjct: 104 RKSLWKRIVFASTKVRSIILLNVITVVYASNIPVVKEVEAIMDPATFTVVRFAVSAIPFI 163

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFVF AR DVKTRNAGIELG WVSLGY  +ALGL+TSDAGRASFIS+FTVI+VPL DGML
Sbjct: 164 PFVFQARGDVKTRNAGIELGFWVSLGYLTQALGLMTSDAGRASFISMFTVILVPLLDGML 223

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA++PA TWFG L+S +GV MLE SGSPP++GD LNFLSA+FFGIHMLRTE +SRST ++
Sbjct: 224 GAVVPARTWFGALMSIIGVAMLEFSGSPPNIGDLLNFLSAVFFGIHMLRTEHVSRSTNEK 283

Query: 290 NFLPLLGYEV 299
           NFLPLLGYEV
Sbjct: 284 NFLPLLGYEV 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449134|ref|XP_004142320.1| PREDICTED: uncharacterized protein LOC101219169 [Cucumis sativus]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 161/206 (78%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W+R+ FASKK+RSI LLNV+TIVYAS IP++K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWRRIFFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+AGIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV MLE SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLESSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEVAYLSEKELFSY 310
              K+ FLPLL YEV  +S   +  Y
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWY 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520623|ref|XP_004167333.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229323 [Cucumis sativus]

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/206 (63%), Positives = 158/206 (76%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W R+ FASKK+RSI LLNV+TIVYAS+IP +K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWXRIFFASKKVRSIILLNVVTIVYASNIPFVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+ GIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDTGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV ML  SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLASSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEVAYLSEKELFSY 310
              K+ FLPLL YEV  +S   +  Y
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWY 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113256|gb|AFW04247.1| integral membrane protein [Triticum aestivum]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 160/206 (77%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +   ++ + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 63  REEGRKEEGDASKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 122

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELGLWVSL Y  +A+GL+TS+AGRASF
Sbjct: 123 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLITSEAGRASF 182

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 183 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGDVLNFLSAVFFG 242

Query: 274 IHMLRTERISRSTKKENFLPLLGYEV 299
           IHMLRTE+ISRST K+ F+ LL +EV
Sbjct: 243 IHMLRTEQISRSTDKKKFMALLSFEV 268

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113263|gb|AFW04252.1| integral membrane protein [Triticum urartu]

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 159/206 (77%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP +GD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGDLLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEV 299
           IHMLRTE+ISRST K+ F+ LL +EV
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEV 272

Source: Triticum urartu

Species: Triticum urartu

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113253|gb|AFW04245.1| integral membrane protein [Triticum aestivum]

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 159/206 (77%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP +GD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGDVLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEV 299
           IHMLRTE+ISRST K+ F+ LL +EV
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEV 272

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310656745|gb|ADP02182.1| EamA domain-containing protein [Triticum aestivum] gi|310656768|gb|ADP02200.1| DUF6 domain-containing protein [Aegilops tauschii]

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/219 (58%), Positives = 163/219 (74%), Gaps = 3/219 (1%)

Query: 84  DEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPI 143
           ++  A  +E+        S+ V     RP W+R+LFASKK RSI +LN +T++YASDIP+
Sbjct: 60  EDPGATGREEGGKEKGGVSKRVH---GRPMWRRILFASKKTRSIMILNALTVIYASDIPV 116

Query: 144 LKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGL 203
           LK  E +  PA F  VRFV++AIPF+PFV  A  D +TRN G+ELG+WVSL Y  +A+GL
Sbjct: 117 LKEVEALTEPAVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGL 176

Query: 204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDF 263
           +TS+AGRASFI+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD 
Sbjct: 177 ITSEAGRASFIAAFTVIVVPLIDGIFGASIPMLTWFGAIVSVIGVGLLECGGSPPCVGDV 236

Query: 264 LNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYL 302
           LNFLSA+FFGIHMLRTE+ISRST K+ F+ LL +E+  L
Sbjct: 237 LNFLSAVFFGIHMLRTEQISRSTDKKKFMALLSFEMPSL 275

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226505558|ref|NP_001151096.1| integral membrane protein DUF6 containing protein [Zea mays] gi|195607384|gb|ACG25522.1| integral membrane protein DUF6 containing protein [Zea mays] gi|195644276|gb|ACG41606.1| integral membrane protein DUF6 containing protein [Zea mays] gi|414872356|tpg|DAA50913.1| TPA: integral membrane protein DUF6 containing protein [Zea mays]

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 130/220 (59%), Positives = 162/220 (73%), Gaps = 5/220 (2%)

Query: 80  AKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYAS 139
           A G +EA      K  D  + + E+ +    RP W R+LFASKK RSI +LN +T++YAS
Sbjct: 65  ASGEEEA-----PKIEDERKKSGETKKPARGRPVWSRILFASKKTRSIIILNALTVIYAS 119

Query: 140 DIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVE 199
           DIP+LK  E +  PA F  VRFV++AIPF+PF   +  D   R AG+ELG+WVSL Y  +
Sbjct: 120 DIPVLKEVEALTEPAVFNMVRFVVAAIPFVPFALRSFGDRSVRYAGLELGVWVSLAYLSQ 179

Query: 200 ALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPS 259
           A+GLL+SDAGRASFI+ FTV+VVPL DG+LGA IP  TWFG ++S  G+G+LEC GSPPS
Sbjct: 180 AIGLLSSDAGRASFITAFTVVVVPLIDGLLGASIPRLTWFGAIMSLFGIGLLECGGSPPS 239

Query: 260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEV 299
           VGD LNF SA+FFGIHMLRTE+ISRST K+ FL LLG+EV
Sbjct: 240 VGDILNFFSAVFFGIHMLRTEQISRSTDKKKFLALLGFEV 279

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
UNIPROTKB|Q3AES3	298	CHY_0503 "Putative membrane pr	0.490	0.540	0.255	2.7e-08
TIGR_CMR|CHY_0503	298	CHY_0503 "putative membrane pr	0.490	0.540	0.255	2.7e-08
UNIPROTKB|Q48AQ1	322	CPS_0094 "Membrane protein" [C	0.487	0.496	0.265	7.6e-08
TIGR_CMR|CPS_0094	322	CPS_0094 "membrane protein" [C	0.487	0.496	0.265	7.6e-08
UNIPROTKB|Q4KHB5	301	PFL_1237 "Putative membrane pr	0.478	0.521	0.245	1.9e-07
UNIPROTKB|Q746W1	292	GSU3407 "Membrane protein, put	0.490	0.551	0.251	8.6e-07
TIGR_CMR|GSU_3407	292	GSU_3407 "membrane protein, pu	0.490	0.551	0.251	8.6e-07
UNIPROTKB|Q83C01	305	CBU_1336 "Transporter, drug/me	0.530	0.570	0.236	1.3e-06
TIGR_CMR|CBU_1336	305	CBU_1336 "membrane protein, pu	0.530	0.570	0.236	1.3e-06
TIGR_CMR|BA_1622	303	BA_1622 "transporter, EamA fam	0.442	0.478	0.215	1.8e-05

UNIPROTKB|Q3AES3 CHY_0503 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 150 (57.9 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 43/168 (25%), Positives = 81/168 (48%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERIS 283
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFS 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0503 CHY_0503 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 150 (57.9 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 43/168 (25%), Positives = 81/168 (48%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERIS 283
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFS 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q48AQ1 CPS_0094 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 147 (56.8 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 46/173 (26%), Positives = 84/173 (48%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTER 281
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDR 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0094 CPS_0094 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 147 (56.8 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 46/173 (26%), Positives = 84/173 (48%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTER 281
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDR 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q4KHB5 PFL_1237 "Putative membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 41/167 (24%), Positives = 82/167 (49%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S+ +R+  L+ +  +++ S      +    + P  +  +RF + ++  LP V        
Sbjct:     3 SQALRADVLMLITAVIWGSAFVAQTSGMNHIGPFLYSGLRFALGSLCLLPLVLRKTPTDR 62

Query:   177 --DDVKTRN---AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA 231
               + +  R     G+ +GL ++LG  ++ +GL+ +    A FI+   VIVVPL   ++G 
Sbjct:    63 QPEPLLNRGLLLGGVLMGLALALGINLQQVGLMFTTVTNAGFITGLYVIVVPLLGLLIGH 122

Query:   232 IIPAHTWFGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHML 277
                  TW G +++ +G+ +L  S S   + GD+L  + A  +G H++
Sbjct:   123 KTGLGTWLGAVLAVVGMFLLSVSDSFHVASGDWLQLIGAFVWGGHVI 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q746W1 GSU3407 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 137 (53.3 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query:   123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV--K 180
             K ++I  L + T  +     I+K A   +    F A RF+M+ +  +PF    R  +  +
Sbjct:     3 KAKAIVALLLTTFFWGITFTIVKDAVAQVDVFVFLAQRFLMAVVLLVPFCACRRVPLTMQ 62

Query:   181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTW 238
             T   G+ LGL++   Y  + + L  + A    F++  +V++VP+   +L   A+     W
Sbjct:    63 TVRHGLFLGLFLFGSYAFQTMALRFTTASNTGFLTGLSVVLVPMLGALLFRQAVSQGIKW 122

Query:   239 FGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISR 284
              GV ++  G+ +L  +G+   ++GD L  + A+   +H++ T + +R
Sbjct:   123 -GVALAVPGLFLLCTNGAFVLNIGDMLAAICAVCVSLHLILTGKFAR 168

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3407 GSU_3407 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 137 (53.3 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query:   123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV--K 180
             K ++I  L + T  +     I+K A   +    F A RF+M+ +  +PF    R  +  +
Sbjct:     3 KAKAIVALLLTTFFWGITFTIVKDAVAQVDVFVFLAQRFLMAVVLLVPFCACRRVPLTMQ 62

Query:   181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTW 238
             T   G+ LGL++   Y  + + L  + A    F++  +V++VP+   +L   A+     W
Sbjct:    63 TVRHGLFLGLFLFGSYAFQTMALRFTTASNTGFLTGLSVVLVPMLGALLFRQAVSQGIKW 122

Query:   239 FGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISR 284
              GV ++  G+ +L  +G+   ++GD L  + A+   +H++ T + +R
Sbjct:   123 -GVALAVPGLFLLCTNGAFVLNIGDMLAAICAVCVSLHLILTGKFAR 168

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83C01 CBU_1336 "Transporter, drug/metabolite exporter family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 44/186 (23%), Positives = 91/186 (48%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSP---PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               + + L +G +   +G+       GDF     A+ + ++++  +  S+  K E+ +  L
Sbjct:   121 DFVTALLCLGGIFILTGANIFNMKGGDFWTLGCAVAYALYIVTLQAFSKKLKPEDTILAL 180

Query:   296 GYEVAY 301
              Y++ +
Sbjct:   181 SYQILF 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1336 CBU_1336 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 44/186 (23%), Positives = 91/186 (48%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSP---PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               + + L +G +   +G+       GDF     A+ + ++++  +  S+  K E+ +  L
Sbjct:   121 DFVTALLCLGGIFILTGANIFNMKGGDFWTLGCAVAYALYIVTLQAFSKKLKPEDTILAL 180

Query:   296 GYEVAY 301
              Y++ +
Sbjct:   181 SYQILF 186

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|BA_1622 BA_1622 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 33/153 (21%), Positives = 79/153 (51%)

Query:   133 ITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIP--FLPFVFW---ARDDVKTRN-AGI 186
             ++ ++ +   +++ A   + P +F  +RF+ + I   F+  +F    ++  +K  + AG+
Sbjct:    16 VSFIWGATFVVVQNAMSFVGPFTFNGIRFLFAGIILLFVQILFSKKASKQHIKQSSLAGL 75

Query:   187 ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISA 245
              +G ++ +GY ++  GLL + + +A F++  ++++VP+   + L          G+ ++ 
Sbjct:    76 IVGFFLCIGYVLQTFGLLYTTSSKAGFLTGLSIVMVPILSFIFLKQKATIFIVIGIAVAT 135

Query:   246 LGVGMLECSGS-PPSVGDFLNFLSAIFFGIHML 277
              G+ +L    S   ++GD L    A+ F  H+L
Sbjct:   136 AGLYLLTAGDSFQLNIGDILVLGCAVAFAAHIL 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      328       307    0.0010  115 3  11 22  0.44    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  208 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.25u 0.10s 23.35t   Elapsed:  00:00:01
  Total cpu time:  23.26u 0.10s 23.36t   Elapsed:  00:00:01
  Start:  Sat May 11 10:00:43 2013   End:  Sat May 11 10:00:44 2013

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017821001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (461 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	3e-04
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.002

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 11/170 (6%)

Query: 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGI 186
           + LL    +   S I +  A E +       A+RF+++A+  LP +      ++      
Sbjct: 10  LALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPW 69

Query: 187 ELGLWVSLGYFVE-----ALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTWF 239
            L L ++L           L L  + A  AS I     +   L   +L  G  +      
Sbjct: 70  LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQIL 129

Query: 240 GVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRS 285
           G+L++  GV ++   G        +G  L   +A+ + ++    +R+SR 
Sbjct: 130 GILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRL 179

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIEL------ 188
           + +A      K   E + P +F A RF+++ I  +  +F  R      +    L      
Sbjct: 1   LSWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLG 60

Query: 189 GLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALG 247
               +LGY +    L    A  AS I+  + +   +   + LG  +      G+++  LG
Sbjct: 61  LFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLG 120

Query: 248 VGML 251
           V ++
Sbjct: 121 VLLI 124

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
PRK11272	292	putative DMT superfamily transporter inner membran	99.88
PRK11689	295	aromatic amino acid exporter; Provisional	99.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.85
PRK15430	296	putative chloramphenical resistance permease RarD;	99.84
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.83
PLN00411	358	nodulin MtN21 family protein; Provisional	99.83
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.8
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.74
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.72
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.59
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.59
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.42
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.36
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.35
COG2510	140	Predicted membrane protein [Function unknown]	99.33
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.27
COG2962	293	RarD Predicted permeases [General function predict	99.22
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.13
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.05
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.05
KOG2765	416	consensus Predicted membrane protein [Function unk	99.02
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.73
PRK11689	295	aromatic amino acid exporter; Provisional	98.72
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.7
PRK11272	292	putative DMT superfamily transporter inner membran	98.64
PLN00411	358	nodulin MtN21 family protein; Provisional	98.61
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.49
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.43
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.39
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.35
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.31
PRK15430	296	putative chloramphenical resistance permease RarD;	98.22
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.21
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.16
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.13
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.12
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.09
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.09
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.96
KOG2766	336	consensus Predicted membrane protein [Function unk	97.88
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.84
PRK13499	345	rhamnose-proton symporter; Provisional	97.82
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.72
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.69
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.43
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.33
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.28
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.0
COG2076	106	EmrE Membrane transporters of cations and cationic	96.91
PRK11431	105	multidrug efflux system protein; Provisional	96.88
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.86
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.85
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.83
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.76
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.25
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.17
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.07
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.0
PRK13499	345	rhamnose-proton symporter; Provisional	95.58
COG2962	293	RarD Predicted permeases [General function predict	95.17
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.16
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.02
KOG1580	337	consensus UDP-galactose transporter related protei	94.39
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	93.67
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.29
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	93.19
KOG1581	327	consensus UDP-galactose transporter related protei	93.13
KOG2765	416	consensus Predicted membrane protein [Function unk	92.42
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	91.63
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	91.63
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	90.19
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	89.85
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	88.22
KOG1581	327	consensus UDP-galactose transporter related protei	87.81
KOG4831	125	consensus Unnamed protein [Function unknown]	86.83
KOG1582	367	consensus UDP-galactose transporter related protei	81.54

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.88  E-value=1.6e-20  Score=178.03  Aligned_cols=183  Identities=16%  Similarity=0.222  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHH-HHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFVEAL  201 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~-~~~~l~~~  201 (328)
                      -.+.+++..++||++++++|...++++|.+++++|+++++++++++...++   .++++++.....|.+.. ..+.++++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999988776543   24556777777887653 45667788


Q ss_pred             HH-hhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcCC-C-CCcHHHHHHHHHHHHHHHHHHH
Q 020256          202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG-S-PPSVGDFLNFLSAIFFGIHMLR  278 (328)
Q Consensus       202 aL-~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~~g-~-~~~~G~ll~LlaAl~~A~~~I~  278 (328)
                      +. +++++++++++.++.|++++++++++|||+++++++|++++++|+.++..++ . ....|++++++++++||.|.+.
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            88 9999999999999999999999987899999999999999999998886543 2 2357999999999999999999


Q ss_pred             HHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhh
Q 020256          279 TERISRSTKKENFLPLLGYEVAYLSEKELFSYDS  312 (328)
Q Consensus       279 ~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~  312 (328)
                      .||..++    +....+.+|+..+++.+.+....
T Consensus       169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  198 (292)
T PRK11272        169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLL  198 (292)
T ss_pred             HHhcCCC----cchHHHHHHHHHHHHHHHHHHHH
Confidence            9997653    23456778988888877665443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.86  E-value=3.7e-20  Score=175.82  Aligned_cols=162  Identities=15%  Similarity=0.140  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH-HHHHHHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALG  202 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~-~~~~~l~~~a  202 (328)
                      .++++++++++++||++++.+|.+.++++|..+.++|+.+++++++++..+++. ++..+...+.|.+. ...+.+++.|
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a   81 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRL-RQFPKRYLLAGGLLFVSYEICLALS   81 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcccccc-ccccHHHHHHHhHHHHHHHHHHHHH
Confidence            457888999999999999999999999999999999999999998876422222 22222233333332 3334455566


Q ss_pred             Hh----hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC------------CCcHHHHHH
Q 020256          203 LL----TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLN  265 (328)
Q Consensus       203 L~----~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~------------~~~~G~ll~  265 (328)
                      ++    ++++++++++.++.|+++++++++ +|||+++++++|++++++|++++..++.            +...|++++
T Consensus        82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~  161 (295)
T PRK11689         82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA  161 (295)
T ss_pred             HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence            65    467888999999999999999985 6999999999999999999998876532            113599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc
Q 020256          266 FLSAIFFGIHMLRTERISRST  286 (328)
Q Consensus       266 LlaAl~~A~~~I~~rkl~~~~  286 (328)
                      ++++++||+|+++.||..++.
T Consensus       162 l~aa~~~A~~~v~~k~~~~~~  182 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYARGK  182 (295)
T ss_pred             HHHHHHHHHHHHHHhhccCCC
Confidence            999999999999999987765

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.85  E-value=3.5e-19  Score=169.35  Aligned_cols=178  Identities=16%  Similarity=0.209  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 020256          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT  205 (328)
Q Consensus       127 ~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~-~~~~l~~~aL~~  205 (328)
                      .++.++++++||++++++|...++++|..+.++|+++++++++++..++|.+   ++.....|+... ..+.+++.++++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~   82 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVP---LNLLLGYGLTISFGQFAFLFCAINF   82 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667889999999999999999999999999999999888776655433322   233334454432 334566778887


Q ss_pred             -cchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC---CC-cHHHHHHHHHHHHHHHHHHHH
Q 020256          206 -SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PP-SVGDFLNFLSAIFFGIHMLRT  279 (328)
Q Consensus       206 -tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~---~~-~~G~ll~LlaAl~~A~~~I~~  279 (328)
                       .++++++++.++.|+++++++++ +|||+++++++|++++++|+.++..++.   +. ..|++++++++++||+|.++.
T Consensus        83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~  162 (299)
T PRK11453         83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN  162 (299)
T ss_pred             cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence             58899999999999999999975 6999999999999999999998876431   22 369999999999999999999


Q ss_pred             HHhhhccCCCChHHHHHHHHHHHHHHHH
Q 020256          280 ERISRSTKKENFLPLLGYEVAYLSEKEL  307 (328)
Q Consensus       280 rkl~~~~~~~~~l~l~~~q~l~aai~ll  307 (328)
                      ||..++.++........+++..+.+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (299)
T PRK11453        163 KKIMSHSTRPAVMSLVVWSALIPIIPFF  190 (299)
T ss_pred             HHHhcccCccchhHHHHHHHHHHHHHHH
Confidence            9987655444455666777766665443

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.84  E-value=4.5e-19  Score=168.44  Aligned_cols=180  Identities=11%  Similarity=0.070  Sum_probs=139.1

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---------ChhhHHHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKTRNAGIELGLWV  192 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~---------~~~~~~~~ll~G~l~  192 (328)
                      ++.+|++++++++++||.+++++|.. ++++|.++.++|++++.++++++...+++         +++++......++..
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI   83 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            55789999999999999999999986 67999999999999999887776543321         112222222223334


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHH
Q 020256          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF  271 (328)
Q Consensus       193 ~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~  271 (328)
                      +..+.++++|++++++++++++.++.|+++.+++++ +|||+++++|+|++++++|++++..++++.   .+++++++++
T Consensus        84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa~~  160 (296)
T PRK15430         84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLAFS  160 (296)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHHH
Confidence            556789999999999999999999999999999975 699999999999999999999887543222   2578899999


Q ss_pred             HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 020256          272 FGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKE  306 (328)
Q Consensus       272 ~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~l  306 (328)
                      ||+|.+..||..++. ..+....+.+++.++.+..
T Consensus       161 ~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~~  194 (296)
T PRK15430        161 FAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIYL  194 (296)
T ss_pred             HHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHH
Confidence            999999999875432 2233445566666665554

>TIGR00688 rarD rarD protein

Probab=99.83  E-value=9.7e-19  Score=162.26  Aligned_cols=156  Identities=14%  Similarity=0.116  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--C---------Chhh-HHHHHHHHHHH
Q 020256          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--D---------DVKT-RNAGIELGLWV  192 (328)
Q Consensus       125 ~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~--~---------~~~~-~~~~ll~G~l~  192 (328)
                      +|++++++++++||++++++|. .++++|.+++++|+++++++++++...++  +         ++++ +....+.|++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            4889999999999999999998 46799999999999999988777653221  1         1112 22345566666


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHH
Q 020256          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF  271 (328)
Q Consensus       193 ~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~  271 (328)
                      ...+.++++|++++++++++++.++.|+++.+++++ +|||+++++|+|++++++|++++..++.+..   +++++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~---~~~l~aa~~  157 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP---WEALVLAFS  157 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch---HHHHHHHHH
Confidence            677889999999999999999999999999999975 7999999999999999999998765432221   468899999


Q ss_pred             HHHHHHHHHHhhh
Q 020256          272 FGIHMLRTERISR  284 (328)
Q Consensus       272 ~A~~~I~~rkl~~  284 (328)
                      ||+|.+..||..+
T Consensus       158 ~a~~~i~~~~~~~  170 (256)
T TIGR00688       158 FTAYGLIRKALKN  170 (256)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999999998765

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.83  E-value=9.6e-19  Score=171.11  Aligned_cols=188  Identities=14%  Similarity=0.111  Sum_probs=153.2

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhc-c-C--C---hhhHHHHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA-R-D--D---VKTRNAGIELGLWVS  193 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~-~~~P~~l~~~R~liA~llLl~~~~~~-~-~--~---~~~~~~~ll~G~l~~  193 (328)
                      |+.+.++.+++.-+..+...++.|.+++ +++|+.+.++|+.+|+++++++.+.+ | +  +   ++++....+.|++..
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            4577899999999999999999999987 79999999999999999999887543 1 1  2   345566777777664


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-------cCcCcHHHHHHHHHHHHhhhhhhcCCC----------
Q 020256          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-------GAIIPAHTWFGVLISALGVGMLECSGS----------  256 (328)
Q Consensus       194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll-------~eri~~~~~igl~lg~iGv~ll~~~g~----------  256 (328)
                      ..+.++++|++++++++++++.+++|+++.++++++       +||+++++++|++++++|+.++...++          
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            455678899999999999999999999999999755       899999999999999999988764210          


Q ss_pred             ----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhh
Q 020256          257 ----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYD  311 (328)
Q Consensus       257 ----------------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~  311 (328)
                                      +...|+++.++++++||+|+++.||..+++++  ....++|++..+++...+...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l  238 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGL  238 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHH
Confidence                            01349999999999999999999999887643  346777888777766544433

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.81  E-value=3.1e-18  Score=158.01  Aligned_cols=175  Identities=14%  Similarity=0.134  Sum_probs=143.3

Q ss_pred             HhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHH
Q 020256          137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI  214 (328)
Q Consensus       137 WG~s~i~~K~~~~-~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l-~~~~~~l~~~aL~~tsa~~aavI  214 (328)
                      ||.+++..|...+ ..|+..+.+.|++.+.+++.++..++ +++++++..+..|.+ ....+.++++|++++++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            8999999999887 58999999999999988887766554 455566666666655 45667888999999999999999


Q ss_pred             HHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC--CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Q 020256          215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF  291 (328)
Q Consensus       215 ~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~--~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~  291 (328)
                      .++.|+++.+++++ +|||+++++++|++++++|+.++..++.  ....|++++++++++|+.+.++.|+..++.++ +.
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~  158 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-EL  158 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hH
Confidence            99999999999975 6999999999999999999998876542  23589999999999999999999998876633 34


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q 020256          292 LPLLGYEVAYLSEKELFSYDSF  313 (328)
Q Consensus       292 l~l~~~q~l~aai~ll~~~~~~  313 (328)
                      .....+++.++++.+++.....
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~  180 (260)
T TIGR00950       159 LQFTGWVLLLGALLLLPFAWFL  180 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4555578888888777665443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.80  E-value=1.6e-17  Score=157.59  Aligned_cols=182  Identities=15%  Similarity=0.089  Sum_probs=144.5

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVE  199 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~--~~~~~~~~~ll~G~l~~~~~~l~  199 (328)
                      ++.+++++++++++.|++++.++|++.++++|..++++|+++++++++++..+++  .++++++..+..|+..+..+.++
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLF   88 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999887764432  34667777777787766667788


Q ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcCCC---C-CcHHHHHHHHHHHHHHHH
Q 020256          200 ALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIH  275 (328)
Q Consensus       200 ~~aL~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~~g~---~-~~~G~ll~LlaAl~~A~~  275 (328)
                      ++++++++++.++++.++.|+++.+++   +|++.  ++.++.++++|+.++..++.   + ...|++++++++++||+|
T Consensus        89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~  163 (293)
T PRK10532         89 YLSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIY  163 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998776   35543  45567788999988764331   2 246999999999999999


Q ss_pred             HHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhh
Q 020256          276 MLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDS  312 (328)
Q Consensus       276 ~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~  312 (328)
                      .+..||..++.   ++... .++..++++.+++....
T Consensus       164 ~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~  196 (293)
T PRK10532        164 ILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGAL  196 (293)
T ss_pred             HHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHH
Confidence            99999997765   33444 45666666666655443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.74  E-value=3.6e-16  Score=148.55  Aligned_cols=171  Identities=12%  Similarity=0.023  Sum_probs=141.3

Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHH---hcc--CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 020256          142 PILKAAEEI-MHPASFCAVRFVMSAIPFLPFVF---WAR--DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS  215 (328)
Q Consensus       142 i~~K~~~~~-~~P~~l~~~R~liA~llLl~~~~---~~~--~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~  215 (328)
                      +.-|.++++ ..|..++++|++++.+.+.+...   +++  .++++++..+..|++....+.+.+++++++++++++++.
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~   98 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK   98 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            467999987 77999999999999887766521   111  256788888889988777778899999999999999999


Q ss_pred             HHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHH
Q 020256          216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLP  293 (328)
Q Consensus       216 ~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~  293 (328)
                      ++.|+++++++++ +|||+++++++|++++++|+++....+.+. ..|++++++++++||+|.++.||..++ ++.++..
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~  177 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSLDKTN  177 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCccc
Confidence            9999999999975 699999999999999999998765443333 469999999999999999999998772 1346778


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 020256          294 LLGYEVAYLSEKELFSYDSF  313 (328)
Q Consensus       294 l~~~q~l~aai~ll~~~~~~  313 (328)
                      ++.||+..+++.++|.....
T Consensus       178 ~~~~~~~~~~~~l~p~~~~~  197 (302)
T TIGR00817       178 LYAYISIMSLFLLSPPAFIT  197 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999998887765543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.72  E-value=3.7e-15  Score=145.35  Aligned_cols=176  Identities=9%  Similarity=-0.005  Sum_probs=140.6

Q ss_pred             hhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHh--cc-C----ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 020256          138 ASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFW--AR-D----DVKTRNAGIELGLWVSLGYFVEALGLLTSDAG  209 (328)
Q Consensus       138 G~s~i~~K~~~~~~~-P~~l~~~R~liA~llLl~~~~~--~~-~----~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~  209 (328)
                      .......|.+++.++ |+.++.+|++++.++..++...  ++ .    .+++++..+..|++....+.....|+++++++
T Consensus        62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs  141 (350)
T PTZ00343         62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVS  141 (350)
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            345777899999999 9999999999998776544322  11 1    12356677788887655566667999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 020256          210 RASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTK  287 (328)
Q Consensus       210 ~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~~~  287 (328)
                      .+.++-++.|+++.+++++ +|||++++++++++++++|+.+....+.++ ..|++++++|+++||+++++.||..++.+
T Consensus       142 ~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~  221 (350)
T PTZ00343        142 FTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKS  221 (350)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999975 699999999999999999999987655444 46999999999999999999999887643


Q ss_pred             ----CCChHHHHHHHHHHHHHHHHHHhhhh
Q 020256          288 ----KENFLPLLGYEVAYLSEKELFSYDSF  313 (328)
Q Consensus       288 ----~~~~l~l~~~q~l~aai~ll~~~~~~  313 (328)
                          ..+...+..++...+++.++|.....
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~  251 (350)
T PTZ00343        222 EIGENLTASNIYMLLTLIASLISLPLVLFF  251 (350)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                24566666777888988888765533

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.59  E-value=4.9e-13  Score=123.49  Aligned_cols=174  Identities=20%  Similarity=0.253  Sum_probs=136.7

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHhcc--C--ChhhHHHHHHHHHH-HHHHH
Q 020256          123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--D--DVKTRNAGIELGLW-VSLGY  196 (328)
Q Consensus       123 ~~~g~llllla~llWG~s~i~~K~~~~~-~~P~~l~~~R~liA~llLl~~~~~~~--~--~~~~~~~~ll~G~l-~~~~~  196 (328)
                      ...+.+..++..+.|+.+....|...++ .++....+.|++++.+.+.+...+++  .  ..+.++...+.+.+ ....+
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            4567788888889999999999998886 77777788899999988554444332  1  11122334444443 45567


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-Hh-cCcCcHHHHHHHHHHHHhhhhhhcCCCC-C---cHHHHHHHHHHH
Q 020256          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML-GAIIPAHTWFGVLISALGVGMLECSGSP-P---SVGDFLNFLSAI  270 (328)
Q Consensus       197 ~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll-~eri~~~~~igl~lg~iGv~ll~~~g~~-~---~~G~ll~LlaAl  270 (328)
                      .+++.++++++++.++.+.++.|+++.++++ ++ +||++++++++++++++|+.++..++.. .   ..|+++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999996 54 9999999999999999999999887643 2   489999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCChHHHHH-HHHH
Q 020256          271 FFGIHMLRTERISRSTKKENFLPLLG-YEVA  300 (328)
Q Consensus       271 ~~A~~~I~~rkl~~~~~~~~~l~l~~-~q~l  300 (328)
                      +||++.+..|+.. +.   +...... +++.
T Consensus       165 ~~a~~~~~~~~~~-~~---~~~~~~~~~~~~  191 (292)
T COG0697         165 LWALYTALVKRLS-RL---GPVTLALLLQLL  191 (292)
T ss_pred             HHHHHHHHHHHhc-CC---ChHHHHHHHHHH
Confidence            9999999999987 43   4444555 5655

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.59  E-value=2.3e-13  Score=128.29  Aligned_cols=174  Identities=16%  Similarity=0.147  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--c----CChhh-HHHHHHHHHHHHHHHHHH
Q 020256          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--R----DDVKT-RNAGIELGLWVSLGYFVE  199 (328)
Q Consensus       127 ~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~--~----~~~~~-~~~~ll~G~l~~~~~~l~  199 (328)
                      .++.++++++|+...+..|...+.-++  ..++++..++++++++...+  +    ..+++ +...+..|+.....+.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999966555444  35777888887887776543  1    11223 333444444455667788


Q ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC--CCcHHHHHHHHHHHHHHHHH
Q 020256          200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM  276 (328)
Q Consensus       200 ~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~--~~~~G~ll~LlaAl~~A~~~  276 (328)
                      +.|++++++++++.+.++.|+++.+++++ +|||+++++|+|++++++|++++..++.  ....|++++++++++|++|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999985 6999999999999999999998876542  22468889999999999999


Q ss_pred             HHHHHhhhccCC-CChHHHHHHHHHHH
Q 020256          277 LRTERISRSTKK-ENFLPLLGYEVAYL  302 (328)
Q Consensus       277 I~~rkl~~~~~~-~~~l~l~~~q~l~a  302 (328)
                      +..|+..++.++ .+......+++..+
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~  187 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAM  187 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHH
Confidence            998886544432 12223334444443

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.42  E-value=3.5e-11  Score=116.77  Aligned_cols=184  Identities=15%  Similarity=0.178  Sum_probs=131.1

Q ss_pred             HHHHhhhHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHhcc-C------ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 020256          134 TIVYASDIPILKAAEE---IMHPASFCAVRFVMSAIPFLPFVFWAR-D------DVKTRNAGIELGLWVSLGYFVEALGL  203 (328)
Q Consensus       134 ~llWG~s~i~~K~~~~---~~~P~~l~~~R~liA~llLl~~~~~~~-~------~~~~~~~~ll~G~l~~~~~~l~~~aL  203 (328)
                      +++=..+.+......+   +.|..+ .++-++.-.++..+....|+ .      .++.|...++++++-..++++...|+
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Q-s~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~  100 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQ-SFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY  100 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHH-HHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444444333   344444 44444444444444444332 1      23456667778888777888999999


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC----------CCcHHHHHHHHHHHHH
Q 020256          204 LTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS----------PPSVGDFLNFLSAIFF  272 (328)
Q Consensus       204 ~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~----------~~~~G~ll~LlaAl~~  272 (328)
                      +||+.+.+.++..+..+++.+++++ +|+|.++.+++|++++++|++++...+.          +...||+++++|++.|
T Consensus       101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~ly  180 (334)
T PF06027_consen  101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILY  180 (334)
T ss_pred             hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHH
Confidence            9999999999999999999999985 7999999999999999999988765431          2368999999999999


Q ss_pred             HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 020256          273 GIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNF  321 (328)
Q Consensus       273 A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~~~~~~~~~f  321 (328)
                      |+++++.++..++.   +.....++.-+++.+++.+.....+-..+.++
T Consensus       181 a~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~  226 (334)
T PF06027_consen  181 AVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERSGIESI  226 (334)
T ss_pred             HHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehhhhhcc
Confidence            99999999998876   45666666666777766655544444444444

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.36  E-value=8.7e-11  Score=111.81  Aligned_cols=178  Identities=12%  Similarity=0.039  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---C-hhhHHHHHHHHHHHHHHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---D-VKTRNAGIELGLWVSLGYFVEAL  201 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~---~-~~~~~~~ll~G~l~~~~~~l~~~  201 (328)
                      ++++.++++++||+.++..|... +.++.++.  |..++.+++..+....+.   + ++.+....+.|+....++.+++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            57888999999999999999866 78887775  788888877655433221   1 23345566677777778899999


Q ss_pred             HHhhcchHHHHHHHH-HHHHHHHHHHHH-hcCcCcHHH----HHHHHHHHHhhhhhhcCCC---------CCcHHHHHHH
Q 020256          202 GLLTSDAGRASFISL-FTVIVVPLFDGM-LGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF  266 (328)
Q Consensus       202 aL~~tsa~~aavI~~-~~Pifv~lla~l-l~eri~~~~----~igl~lg~iGv~ll~~~g~---------~~~~G~ll~L  266 (328)
                      +.++++.+.+..+.+ +.++++.+++.+ +||+.++++    ++|+++.++|+.++...+.         +...|.++++
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l  158 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL  158 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence            999999999988877 788888888865 799999988    9999999999988765321         1258999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHH
Q 020256          267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELF  308 (328)
Q Consensus       267 laAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~  308 (328)
                      +++++|+.|.+..|+..  .|+.+......+.++.++++..+
T Consensus       159 ~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~  198 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNL  198 (290)
T ss_pred             HHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHH
Confidence            99999999999999762  43333322244444555544433

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.35  E-value=1.1e-11  Score=100.70  Aligned_cols=117  Identities=19%  Similarity=0.255  Sum_probs=97.7

Q ss_pred             HHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc-c-----CChhhHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 020256          135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA-R-----DDVKTRNAGIELGLW-VSLGYFVEALGLLTSD  207 (328)
Q Consensus       135 llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~-~-----~~~~~~~~~ll~G~l-~~~~~~l~~~aL~~ts  207 (328)
                      ++||...+..|...++.||....++|+.++++ ++++.... +     .+.+++......|++ ...++.+++.|+++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            47999999999999999999999999999997 44443322 1     133455566666665 4677889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       208 a~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      ++.++.+.++.|+++.+++++ ++|+++.++++|+++.++|++++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999975 699999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.33  E-value=1e-11  Score=103.77  Aligned_cols=127  Identities=18%  Similarity=0.199  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc-------CChhhHHHHHHHHHHHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-------DDVKTRNAGIELGLWVSLGYFV  198 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~-------~~~~~~~~~ll~G~l~~~~~~l  198 (328)
                      ..++.++++++||...++.|...+++||..-.++|-++..++++.++...+       .+.|.|....+.|+..+..+.+
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~   83 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999888877653       1456777888888877888999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      |+.+++...++..+-+..+.|+++.+++++ +|||++..+|+|+++..+|++++.
T Consensus        84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999985 799999999999999999998764

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.27  E-value=4.5e-10  Score=103.84  Aligned_cols=181  Identities=17%  Similarity=0.116  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh--ccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGL  203 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~--~~~~~~~~~~~ll~G~l~~~~~~l~~~aL  203 (328)
                      .++.++.+++.-=....+.|.....++|...+.+|..+++++++++...  +|..++++...+..|+.+..-+.++|.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4666677777666777888999999999999999999999999887753  34567888888899998877788889999


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcCCC---CC-cHHHHHHHHHHHHHHHHHHHH
Q 020256          204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---PP-SVGDFLNFLSAIFFGIHMLRT  279 (328)
Q Consensus       204 ~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~~g~---~~-~~G~ll~LlaAl~~A~~~I~~  279 (328)
                      +..|-+.+.-|-.+-|+.+.++.   -+|  .+..+-+.+++.|+.++.-.+.   +. ..|..+++.++.+|+.|++..
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~~---sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G  167 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALLS---SRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG  167 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHHh---ccc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence            99999999999999998766554   233  3455556677888887755442   33 589999999999999999999


Q ss_pred             HHhhhccCCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 020256          280 ERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFH  314 (328)
Q Consensus       280 rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~~~  314 (328)
                      +|..+..+   ...-+...|.+++++.+|+.....
T Consensus       168 ~r~g~~~~---g~~g~a~gm~vAaviv~Pig~~~a  199 (292)
T COG5006         168 QRAGRAEH---GTAGVAVGMLVAALIVLPIGAAQA  199 (292)
T ss_pred             chhcccCC---CchHHHHHHHHHHHHHhhhhhhhc
Confidence            99886543   334566788999999888765443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.22  E-value=2.5e-09  Score=100.81  Aligned_cols=173  Identities=18%  Similarity=0.157  Sum_probs=131.1

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc---------CChhhHHHHHHHHHHHH
Q 020256          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---------DDVKTRNAGIELGLWVS  193 (328)
Q Consensus       123 ~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~---------~~~~~~~~~ll~G~l~~  193 (328)
                      ..+|+++.+.+.++||..+...|. ++.+++.++...|.+-+..+++.+....|         ++++.+....+.+++..
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~   83 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG   83 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            357999999999999999999998 57899999999999999988876654322         12233445556677777


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHH
Q 020256          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF  272 (328)
Q Consensus       194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~~  272 (328)
                      ..+..+.++...-.+-++++=.+..|++..+++. ++|||+++.||++++++.+||.......+++.+   ..+.=+++|
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpw---val~la~sf  160 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPW---VALALALSF  160 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcH---HHHHHHHHH
Confidence            7888999999999999999999999999999997 479999999999999999999876654333432   344456899


Q ss_pred             HHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 020256          273 GIHMLRTERISRSTKKENFLPLLGYEVAYLSE  304 (328)
Q Consensus       273 A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai  304 (328)
                      ++|-.. ||..+ .   +...-...+++....
T Consensus       161 ~~Ygl~-RK~~~-v---~a~~g~~lE~l~l~p  187 (293)
T COG2962         161 GLYGLL-RKKLK-V---DALTGLTLETLLLLP  187 (293)
T ss_pred             HHHHHH-HHhcC-C---chHHhHHHHHHHHhH
Confidence            999865 44333 2   333333445444433

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.13  E-value=2.6e-11  Score=112.76  Aligned_cols=164  Identities=16%  Similarity=0.164  Sum_probs=123.8

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWVSLGYF  197 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~~~~~~  197 (328)
                      +..+|.++..++ .++.+..++.+.. .+.+|.+..-.|++.-.++-.+..+.++.    +....++.++.|+..+.+..
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~-~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKV-LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhh-hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            445677777777 5565555555543 35789999999977666665555443321    11122334456666555667


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC---------------CCcHH
Q 020256          198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---------------PPSVG  261 (328)
Q Consensus       198 l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~---------------~~~~G  261 (328)
                      +.+++++|.+.++|.+|..+.|+++.+++|. +||+.++...++.++.+.||+++.+|..               .-..|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            7789999999999999999999999999985 7999999999999999999999988731               12478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccC
Q 020256          262 DFLNFLSAIFFGIHMLRTERISRSTK  287 (328)
Q Consensus       262 ~ll~LlaAl~~A~~~I~~rkl~~~~~  287 (328)
                      .+.++.++++-|--.|+.|+..|+.+
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h  218 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAH  218 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhcccc
Confidence            88999999999988899999988764

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.05  E-value=2.9e-09  Score=87.40  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHhccC--------ChhhHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256          158 AVRFVMSAIPFLPFVFWARD--------DVKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM  228 (328)
Q Consensus       158 ~~R~liA~llLl~~~~~~~~--------~~~~~~~~ll~G~l~~-~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l  228 (328)
                      .+|++.+.+++..+...+++        +++.+......|+... .++.++++|+++++ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            68999999998887765432        1233445556676654 67889999999999 58889999999999999975


Q ss_pred             -hcCcCcHHHHHHHHHHHHhhhhhhcCC
Q 020256          229 -LGAIIPAHTWFGVLISALGVGMLECSG  255 (328)
Q Consensus       229 -l~eri~~~~~igl~lg~iGv~ll~~~g  255 (328)
                       +|||+++++|++++++++|++++..++
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence             799999999999999999999987664

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.05  E-value=1e-08  Score=94.44  Aligned_cols=125  Identities=23%  Similarity=0.271  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGY  196 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P--~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~-~~~~  196 (328)
                      .+|.++.++++++|+...+..|...++.+|  ..+..+|+.++.++++++....+.    +.+++...+..|++. ..++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999998877774  455557899999998888765432    233455555566553 4678


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhh
Q 020256          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGV  248 (328)
Q Consensus       197 ~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv  248 (328)
                      .+++.++++.+++.++.+.++.|+++.+++++ ++|+++..+++|.++.+.|+
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999975 79999999999999999997

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.02  E-value=4.6e-09  Score=101.76  Aligned_cols=140  Identities=12%  Similarity=0.138  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHhhhhhhcCCC-----
Q 020256          183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSGS-----  256 (328)
Q Consensus       183 ~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll-~eri~~~~~igl~lg~iGv~ll~~~g~-----  256 (328)
                      +..+.+..+.+.+.+.+..++.+|+++..+++.++.-+|+..++.++ +||++..+.+++++.+.||+++..++.     
T Consensus       160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~  239 (416)
T KOG2765|consen  160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD  239 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence            34455555666777888899999999999999999999999999765 899999999999999999999876631     


Q ss_pred             ----CCcHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCChHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 020256          257 ----PPSVGDFLNFLSAIFFGIHMLRTERISRSTK-KENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQ  322 (328)
Q Consensus       257 ----~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~-~~~~l~l~~~q~l~aai~ll~~~~~~~~~~~~~f~  322 (328)
                          ....|+++++++|+.||+|+++.||...+++ ..+.-.+.++--++..+++.|.....+....+.|+
T Consensus       240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~  310 (416)
T KOG2765|consen  240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE  310 (416)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence                2368999999999999999999999887763 44433333333334444444433333333444433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.73  E-value=6.2e-07  Score=85.20  Aligned_cols=128  Identities=13%  Similarity=0.105  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYFV  198 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~-~~~~~l  198 (328)
                      ..|.++.+++++.|+...+..|...++.+|....... ++++++++++......    +...+...+.+|++. ..+|.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999987778887775544 5566666666554321    222333344566653 457889


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      +++++++.++++++++.++.|++..+++++ ++|+++..+++|.++.+.|+.+..
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999975 799999999999999999988764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.72  E-value=5.2e-07  Score=85.79  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHHHHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFV  198 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~-----~~~~~~~~~ll~G~l~~~~~~l  198 (328)
                      ..|.++.++++++|+...+..|...++.++.....   ..+++.+.+......     .+...+...+..|+....+|.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999877778765432   333333333222221     1233454455555544567899


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      +++++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+++...
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999975 7999999999999999999987643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.70  E-value=4.9e-06  Score=79.47  Aligned_cols=160  Identities=16%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM  228 (328)
Q Consensus       152 ~P~~l~~~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l  228 (328)
                      .|..+.+..++...+.-.+.....+   .++..++..+..+++......+...+++|.+...-.++-+..|+.+++++.+
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            4889999999988887666554333   2344566777788877777788889999999988888899999999999975


Q ss_pred             -hcCcCcHHHHHHHHHHHHhhhhhhcCCC-------C----CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Q 020256          229 -LGAIIPAHTWFGVLISALGVGMLECSGS-------P----PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG  296 (328)
Q Consensus       229 -l~eri~~~~~igl~lg~iGv~ll~~~g~-------~----~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~  296 (328)
                       +|||.++++++++++..+|+++....+.       .    ...|+++.+++.++-|+..++.+|..+++ +.++....+
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mf  189 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMF  189 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHH
Confidence             6999999999999999999988755431       1    12499999999999999999999998876 446788888


Q ss_pred             HHHHHHHHHHHHHhhh
Q 020256          297 YEVAYLSEKELFSYDS  312 (328)
Q Consensus       297 ~q~l~aai~ll~~~~~  312 (328)
                      +..+.+.+..++....
T Consensus       190 y~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  190 YTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888877766554433

; GO: 0055085 transmembrane transport

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.64  E-value=1.4e-06  Score=82.68  Aligned_cols=129  Identities=10%  Similarity=0.018  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC------ChhhHHHHHHHHHHH-HHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLWV-SLGY  196 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~------~~~~~~~~ll~G~l~-~~~~  196 (328)
                      ..|.++.++++++|+...+..|..... ++.....+.+.++++++.++......      +.+.|...+..|++. ..++
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999986433 44566788888888888776654321      234455555566653 4678


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       197 ~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      .++++++++.++++++++.++.|++..+++++ ++|+++..+++|.++.++|+.++..
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999975 6999999999999999999988754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.61  E-value=1.4e-06  Score=85.56  Aligned_cols=131  Identities=8%  Similarity=0.067  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHh-ccCChhh--------HHHHHHHHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP-ASFCAVRFVMSAIPFLPFVFW-ARDDVKT--------RNAGIELGLWVS  193 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P-~~l~~~R~liA~llLl~~~~~-~~~~~~~--------~~~~ll~G~l~~  193 (328)
                      ..|.++++++++.|+...+..|......++ ....++..+++++.+.+.... .+.+.+.        ....+..|+...
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~  267 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHH
Confidence            458899999999999999999987776655 466667777776666544433 2211111        111222333334


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (328)
Q Consensus       194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~  254 (328)
                      ..|.++.+++++.+++.++...++.|++..+++++ ++|+++..+++|.++.+.|++++..+
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            57888999999999999999999999999999985 79999999999999999999887643

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.49  E-value=7.9e-06  Score=76.27  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=100.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC-
Q 020256          179 VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS-  256 (328)
Q Consensus       179 ~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~-  256 (328)
                      +++.....+=++++...+.+.+.++++.+++.--++..+-.+++++++++ +|+|++++||+++++-++|+.++-.++. 
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            34445555566667777788999999999999999999999999999975 7999999999999999999998754320 


Q ss_pred             -----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHh
Q 020256          257 -----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSY  310 (328)
Q Consensus       257 -----------------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~  310 (328)
                                       +...|.++.++++++-++..++.+|..|+.+ .+...-+....+.+.+..++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~  163 (244)
T PF04142_consen   94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLAL  163 (244)
T ss_pred             ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHH
Confidence                             1247999999999999999999999998853 3444334333344444444443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.43  E-value=1.2e-05  Score=76.58  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHH-hcc----------CChhhHHHHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMH---PASFCAVRFVMSAIPFLPFVF-WAR----------DDVKTRNAGIELG  189 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~---P~~l~~~R~liA~llLl~~~~-~~~----------~~~~~~~~~ll~G  189 (328)
                      ..|.++.+++++.|+...+..|...+..+   ......+-.+++.+.+..... ..+          .+...+...+..|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            45999999999999999999998654332   233344444444443332221 111          1223455555566


Q ss_pred             HHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256          190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (328)
Q Consensus       190 ~l~-~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~  254 (328)
                      ++. ..+|.+++.++++.++++++.+..+.|++..+++++ ++|+++..+++|.++.++|+++...+
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            553 467889999999999999999999999999999975 79999999999999999999876543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.39  E-value=1.8e-06  Score=81.44  Aligned_cols=128  Identities=14%  Similarity=0.088  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHHHHHHh-ccCC----hhhHHHHHHH-HHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPA----SFCAVRFVMSAIPFLPFVFW-ARDD----VKTRNAGIEL-GLWVS  193 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~----~l~~~R~liA~llLl~~~~~-~~~~----~~~~~~~ll~-G~l~~  193 (328)
                      ..|.++.++++++|+...+..|....+.+|.    ....+.+++.++.+.+.... .+..    ...+...... ++...
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  222 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG  222 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence            3467788899999999999998764444442    23334444432322222221 1111    1122222233 33345


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhh
Q 020256          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML  251 (328)
Q Consensus       194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll  251 (328)
                      .+|.++++++++.+++.++.+.++.|++..+++++ +||+++..+++|.++.++|++++
T Consensus       223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            67889999999999999999999999999999975 79999999999999999999763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.35  E-value=7.8e-06  Score=77.71  Aligned_cols=130  Identities=16%  Similarity=0.108  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhcc-CC--hhhH------------HH-H
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR-DD--VKTR------------NA-G  185 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~~~-~~--~~~~------------~~-~  185 (328)
                      ..|.++.+++++.|+...+..|...+  +.+|..+..+-...+++.++|+..... .+  ..++            .. .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            56999999999999999999999887  799999999999999998888865321 11  1100            00 1


Q ss_pred             HHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          186 IELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       186 ll~G~-l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      +..+. .....+.+++.+++++++..++++..+.|+++.+++++ ++|+++..+++|.++.++|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            11222 11112245667899999999999999999999999975 7999999999999999999987643

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.31  E-value=4.8e-05  Score=70.06  Aligned_cols=129  Identities=16%  Similarity=0.273  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHH-HHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHH-HHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFV  198 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~-~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~-~~~~l  198 (328)
                      ..|.++.+++.+.|+...+..|... ..++..... +.+.....+..+......   ...+.+......|+... .++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999876 677777776 444423333333222211   23345666666776654 57889


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      ++.+++..+++.++.+.++.|++..+++++ ++|+++..+++|.++.+.|+.+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998875 6999999999999999999987654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.22  E-value=4.2e-05  Score=72.73  Aligned_cols=126  Identities=8%  Similarity=-0.051  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHhcc--C---ChhhHHHHHHHHHHHHHHHHHHHH
Q 020256          129 LLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR--D---DVKTRNAGIELGLWVSLGYFVEAL  201 (328)
Q Consensus       129 lllla~llWG~s~i~~K~~~~~--~~P~~l~~~R~liA~llLl~~~~~~~--~---~~~~~~~~ll~G~l~~~~~~l~~~  201 (328)
                      +.++++++|+...+..|....+  .+......+-..++.+.++++.....  .   +...+...+..|+....++.+++.
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~  232 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999886432  22233333333343333222211100  0   111122333445444567899999


Q ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256          202 GLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (328)
Q Consensus       202 aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~  254 (328)
                      ++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+.++..+
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999975 79999999999999999998877544

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.21  E-value=2.1e-05  Score=75.01  Aligned_cols=127  Identities=20%  Similarity=0.165  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHH---HHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFV---MSAIPFLPFVFWAR-DDVKTRNAGIELGLWVSLGYFVE  199 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~l---iA~llLl~~~~~~~-~~~~~~~~~ll~G~l~~~~~~l~  199 (328)
                      .+|++..+++.+.++...+..|..  +.+|....+..+.   ++++++.+...+.+ ...+......+.|++...++.++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~~~y  228 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGNFFY  228 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999975  5888888555444   34444333321111 11223334455787767788889


Q ss_pred             HHHHh-hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHhhhhhh
Q 020256          200 ALGLL-TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVGMLE  252 (328)
Q Consensus       200 ~~aL~-~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~----igl~lg~iGv~ll~  252 (328)
                      +.+++ +.+++.++.+.+..|+...+.+.+ +||+.+++++    +|.++.++|+.++.
T Consensus       229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            99999 999999999999999999999975 7999999999    99999999998763

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.16  E-value=0.00097  Score=64.89  Aligned_cols=197  Identities=13%  Similarity=0.159  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhc-c---CCHHHHHHHHHHHHHHHHHHHHHhc-----cC-----------ChhhHHH
Q 020256          125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWA-----RD-----------DVKTRNA  184 (328)
Q Consensus       125 ~g~llllla~llWG~s~i~~K~~~~-~---~~P~~l~~~R~liA~llLl~~~~~~-----~~-----------~~~~~~~  184 (328)
                      .-++.+++..+.++...+..|+.-. +   ..|...++.--++-.++-+.+++++     ++           .+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4466677778899999999998754 2   5666777666666555555444443     11           0112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC---C-----
Q 020256          185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS---G-----  255 (328)
Q Consensus       185 ~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~---g-----  255 (328)
                      ..+=.++++..+.+++.++.+.+++.-.+...+-.+.++++..+ ++||++++||.++++-++|+.++-.+   +     
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            23333445555568899999999999998888889999999974 79999999999999999999998622   1     


Q ss_pred             ----CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH-HHHHHHHHHHhhhhcccccccccc
Q 020256          256 ----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEV-AYLSEKELFSYDSFHAQKIFNFQF  323 (328)
Q Consensus       256 ----~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~-l~aai~ll~~~~~~~~~~~~~f~~  323 (328)
                          .+...|....+.+++.-++..++.+|..|+- ..+.+.-+ .|+ +++.+..+......+...+.+.+|
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~N-iqL~~~g~~f~~l~~~~~d~~~i~~~gf  245 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRN-IQLYFFGILFNLLTILLQDGEAINEYGF  245 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHH-HHHHHHHHHHHHHHHhhccccccccCCc
Confidence                1235899999999999999999999999864 22333333 344 334444444444444444444443

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.13  E-value=0.0001  Score=60.77  Aligned_cols=61  Identities=20%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      ....+.++..+++..|.+.+..+.++.++++.+++++ +||+++.++++|+.+.++|++++.
T Consensus        47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3456778889999999999998888999999999975 799999999999999999998774

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.12  E-value=0.00012  Score=71.54  Aligned_cols=129  Identities=11%  Similarity=0.125  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHHHHHHhc-cCC----h-------hh--H
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWA-RDD----V-------KT--R  182 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~-------~~P~~l~~~R~liA~llLl~~~~~~-~~~----~-------~~--~  182 (328)
                      ..|.++.+++++.|+...+..|...++       +++..+..+-.++++++++|+.... ...    .       ..  +
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            458999999999999999999998764       5677677777788888888876522 110    0       01  1


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          183 NAGI----ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       183 ~~~l----l~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      ...+    ..|+..+..+.+.+++++.+++...++...+-|+++.+++++ ++|+++..+++|.++.++|+.+..
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            1111    111112222233446999999999999999999999999974 799999999999999999998753

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.09  E-value=0.00011  Score=62.27  Aligned_cols=118  Identities=17%  Similarity=0.066  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHH
Q 020256          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGL  203 (328)
Q Consensus       125 ~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l-~~~~~~l~~~aL  203 (328)
                      .+++++++..++=...-++.|...++.+....... .. ..+..    .      .+....+..|+. ....+.++.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~~-~~~~~----~------~~p~~~i~lgl~~~~la~~~w~~aL   69 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-FI-AALLA----F------GLALRAVLLGLAGYALSMLCWLKAL   69 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-HH-HHHHH----H------hccHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788888888888999999999876654332221 11 01100    0      001112344544 345788899999


Q ss_pred             hhcchHHHHHHHHHHHHHHHHHHH---HhcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256          204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECS  254 (328)
Q Consensus       204 ~~tsa~~aavI~~~~Pifv~lla~---ll~eri~~~~~igl~lg~iGv~ll~~~  254 (328)
                      +..+.+.+.-+.+..++++.+.++   +++|+++..+++|+++.++|++++..+
T Consensus        70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            999999998888888888887776   579999999999999999999988654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.09  E-value=0.00024  Score=60.28  Aligned_cols=125  Identities=18%  Similarity=0.159  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHhcc-CC---------h-------hh
Q 020256          126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWAR-DD---------V-------KT  181 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~-------~~~P~~l~~~R~liA~llLl~~~~~~~-~~---------~-------~~  181 (328)
                      |.++.+.+.++-+...+..|....       ..++..+..+-...+.+++++.....+ .+         .       +.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            467788899999999999988654       479999999999999999988765431 10         0       11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (328)
Q Consensus       182 ~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l  250 (328)
                      +...+..|++.+..+...+.-++++++...+++...-.+++.+++++ ++|+++..+++|++++++|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            22334445554555667778899999999999999999999999975 6999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.00  E-value=5e-05  Score=68.57  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC---CCcHHHHHHHHHH
Q 020256          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFLNFLSA  269 (328)
Q Consensus       194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~---~~~~G~ll~LlaA  269 (328)
                      ...++|..+++..+++.++-+....-.|+.+++++ +|+|+..-++++.++++.|++++...+.   .-..|...++.||
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA  144 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSA  144 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHH
Confidence            34678888999999999999999999999999986 7999999999999999999999875543   3468999999999


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 020256          270 IFFGIHMLRTERISRST  286 (328)
Q Consensus       270 l~~A~~~I~~rkl~~~~  286 (328)
                      +.-|+|-+..|+.....
T Consensus       145 ~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  145 FMAALYKVLFKMFIGNA  161 (290)
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            99999999999987543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.96  E-value=5.4e-05  Score=73.22  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=137.0

Q ss_pred             HHHHHHHhc--cC-CHHHHHHHHHHHHHHHHHHHHHhcc---C---ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 020256          141 IPILKAAEE--IM-HPASFCAVRFVMSAIPFLPFVFWAR---D---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA  211 (328)
Q Consensus       141 ~i~~K~~~~--~~-~P~~l~~~R~liA~llLl~~~~~~~---~---~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~a  211 (328)
                      ....|..++  +. -|..+..+++..+.+.++.....+-   .   ++..+...+-+|+....+-.+-..++.+.+++-.
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~  112 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY  112 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence            455677776  43 4888888888877777665443321   1   1234667777888776677777889999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhc-cCC
Q 020256          212 SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRS-TKK  288 (328)
Q Consensus       212 avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~-~~~  288 (328)
                      -.+=++.|+++.+++++ .+|+.+...+..++....||.+-...+.++ ..|.+.++++.+..+...++.+++.++ ...
T Consensus       113 q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~  192 (316)
T KOG1441|consen  113 QTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGES  192 (316)
T ss_pred             HHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            99999999999999986 588999999999999999998877665555 589999999999999999999999842 236


Q ss_pred             CChHHHHHHHHHHHHHHHH-HHhhhhcccc
Q 020256          289 ENFLPLLGYEVAYLSEKEL-FSYDSFHAQK  317 (328)
Q Consensus       289 ~~~l~l~~~q~l~aai~ll-~~~~~~~~~~  317 (328)
                      .+.+.+..++.-.+.+.++ |..+...+..
T Consensus       193 ~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~  222 (316)
T KOG1441|consen  193 LNSMNLLYYTAPISLIFLLIPFLDYVEGNK  222 (316)
T ss_pred             cCchHHHHHhhhHHHHHHhcchHhhhcccc
Confidence            7888899898888888777 7666555433

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.88  E-value=1.2e-06  Score=81.59  Aligned_cols=155  Identities=18%  Similarity=0.255  Sum_probs=117.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-h
Q 020256          152 HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-L  229 (328)
Q Consensus       152 ~P~~l~~~R~liA~llLl~~~~~~~~~~~-~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l  229 (328)
                      .|..-.|+-+.+-+++-.+++..|++..+ .|...+++++.-.-++++...|.|||+-..+.++..-....+.+++|+ +
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fL  126 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFL  126 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHH
Confidence            36666788888888888887776654322 345566666553334445567889999998898888777778889986 6


Q ss_pred             cCcCcHHHHHHHHHHHHhhhhhhcCC---------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 020256          230 GAIIPAHTWFGVLISALGVGMLECSG---------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVA  300 (328)
Q Consensus       230 ~eri~~~~~igl~lg~iGv~ll~~~g---------~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l  300 (328)
                      |.|.+..++.|++++++|+++++..+         .+...||.+.+++|-+||+.++.-+.+.++.   +...+.+..-+
T Consensus       127 ktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgL  203 (336)
T KOG2766|consen  127 KTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGL  203 (336)
T ss_pred             HHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHH
Confidence            88999999999999999999876642         1346899999999999999999888888876   55666666667


Q ss_pred             HHHHHHHHH
Q 020256          301 YLSEKELFS  309 (328)
Q Consensus       301 ~aai~ll~~  309 (328)
                      +|++++.+-
T Consensus       204 fGaIIsaIQ  212 (336)
T KOG2766|consen  204 FGAIISAIQ  212 (336)
T ss_pred             HHHHHHHHH
Confidence            777777554

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.84  E-value=0.0012  Score=62.54  Aligned_cols=166  Identities=20%  Similarity=0.264  Sum_probs=118.9

Q ss_pred             hhhHHHHHHHhc----cC----CHHHHHHHHHHHHHHHHHHHHHhccC-C---------------hhhHHHH--HHHHHH
Q 020256          138 ASDIPILKAAEE----IM----HPASFCAVRFVMSAIPFLPFVFWARD-D---------------VKTRNAG--IELGLW  191 (328)
Q Consensus       138 G~s~i~~K~~~~----~~----~P~~l~~~R~liA~llLl~~~~~~~~-~---------------~~~~~~~--ll~G~l  191 (328)
                      ..+.+..|++-+    +.    +|+..+..=|+-=++.+..+.+.+++ +               ....+..  +.=.++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            457778887642    22    46666666666666666665554321 0               0011111  111223


Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhcCC-----------CCCc
Q 020256          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG-----------SPPS  259 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~~g-----------~~~~  259 (328)
                      -..+..+.+.|+.+|+++.--.+-+...+|+.+++. ++++++..++|+|+....+|++++-..+           .+..
T Consensus        96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ii  175 (372)
T KOG3912|consen   96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSII  175 (372)
T ss_pred             HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccch
Confidence            234556778899999998877777888899999996 6899999999999999999998764432           1245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 020256          260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSE  304 (328)
Q Consensus       260 ~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai  304 (328)
                      .||++.+.+=+.-|.-.++-+|..++. ..+++..++|+-+++.+
T Consensus       176 tGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v  219 (372)
T KOG3912|consen  176 TGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLV  219 (372)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHH
Confidence            899999999999999999999988876 56889999999888843

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.82  E-value=0.0029  Score=62.03  Aligned_cols=154  Identities=17%  Similarity=0.061  Sum_probs=103.7

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH----hc-------cCChhhHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVF----WA-------RDDVKTRNAGIELGL  190 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~----~~-------~~~~~~~~~~ll~G~  190 (328)
                      +...|++..++++++||+.++-.|. ..+.+= +.-+.=..+-.-++.|+..    .+       ..+.+.+...++.|+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~w-E~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSW-ETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            4578999999999999999999998 443331 1111101111111112111    11       124455667778888


Q ss_pred             HHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHH-hcCcC---c----HHHHHHHHHHHHhhhhhhc----CC--
Q 020256          191 WVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDGM-LGAII---P----AHTWFGVLISALGVGMLEC----SG--  255 (328)
Q Consensus       191 l~~~~~~l~~~aL~~tsa~~aa-vI~~~~Pifv~lla~l-l~eri---~----~~~~igl~lg~iGv~ll~~----~g--  255 (328)
                      +...+...++.++++...+.+- +-..++-++..++..+ ++|-.   +    ..-.+|+++.++|+++...    .+  
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~  161 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK  161 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            8888888999999998888874 3456777777777754 45422   1    3567999999999998766    21  


Q ss_pred             --------CCCcHHHHHHHHHHHHHHHHHH
Q 020256          256 --------SPPSVGDFLNFLSAIFFGIHML  277 (328)
Q Consensus       256 --------~~~~~G~ll~LlaAl~~A~~~I  277 (328)
                              .++..|.++++++.+.+++|..
T Consensus       162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        162 MGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             cccccccccchHhHHHHHHHHHHHHHHHHH
Confidence                    1246899999999999999993

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0018  Score=62.27  Aligned_cols=175  Identities=12%  Similarity=0.055  Sum_probs=122.2

Q ss_pred             hHHHHHHHhccCC-HHH--HHHHHHHHHHHHHHHHHHhc-----cCChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 020256          140 DIPILKAAEEIMH-PAS--FCAVRFVMSAIPFLPFVFWA-----RDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA  211 (328)
Q Consensus       140 s~i~~K~~~~~~~-P~~--l~~~R~liA~llLl~~~~~~-----~~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~a  211 (328)
                      .-+.-|+++...+ |..  +..++.+...+.+...-..+     +.+++..+..+-..+++....+.-..+++|.+...-
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~  106 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMF  106 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHH
Confidence            4566788776432 333  33478777766655432222     123444444444444433333344568899999999


Q ss_pred             HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 020256          212 SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPS-VGDFLNFLSAIFFGIHMLRTERISRSTKKE  289 (328)
Q Consensus       212 avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~~-~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~  289 (328)
                      .++=...|+++++...+ +|.+++...|.++....+|......++..++ .|..|++...+.-+.+.+..|+..+.. ..
T Consensus       107 tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l  185 (314)
T KOG1444|consen  107 TVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSA-NL  185 (314)
T ss_pred             HHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhccc-cc
Confidence            99999999999999964 6878889999999999999887777666564 589999999999999999999976543 44


Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhcc
Q 020256          290 NFLPLLGYEVAYLSEKELFSYDSFHA  315 (328)
Q Consensus       290 ~~l~l~~~q~l~aai~ll~~~~~~~~  315 (328)
                      +-..+.+|..+.....++...+.+++
T Consensus       186 ~~~~lv~yNnl~~L~~l~~~~~~~ge  211 (314)
T KOG1444|consen  186 NKFGLVFYNNLLSLPPLLILSFITGE  211 (314)
T ss_pred             cceeEEeehhHHHHHHHHHHHHHhcc
Confidence            55667788877777666655555544

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.69  E-value=0.0011  Score=62.08  Aligned_cols=126  Identities=15%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHHH
Q 020256          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYFV  198 (328)
Q Consensus       124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~-~~~~~l  198 (328)
                      ..|..+.+.+..+|....+..|-+....+--.-+..-+++++++.+|+-.....    +.+-....+..|++- ...|.+
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL  226 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL  226 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence            569999999999999999999987755666677788899999999998765421    233334445556553 467999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhh
Q 020256          199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVG  249 (328)
Q Consensus       199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~  249 (328)
                      ...++...+...-+++.++.|.+..+.+++ ++|.++..||++++..+++..
T Consensus       227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999975 799999999999887776653

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.43  E-value=0.0019  Score=61.84  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=95.8

Q ss_pred             hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH--hccC-------Chhh-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020256          138 ASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVF--WARD-------DVKT-RNAGIELGLWVSLGYFVEALGLLTSD  207 (328)
Q Consensus       138 G~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~--~~~~-------~~~~-~~~~ll~G~l~~~~~~l~~~aL~~ts  207 (328)
                      |..|...+.-.+.-=|+.++....++-.++-.....  .++.       ++++ +++..-.|+..+..-.+-.++++|++
T Consensus        30 ~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVt  109 (349)
T KOG1443|consen   30 GLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVT  109 (349)
T ss_pred             HHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeee
Confidence            345555444333233666666655543333222211  1111       1222 24444566555545567778899998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020256          208 AGRASFISLFTVIVVPLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRS  285 (328)
Q Consensus       208 a~~aavI~~~~Pifv~lla~ll~-eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~  285 (328)
                      .+.-+..=+..++|+.+++.++| ||.++.-..-+++..+|+++....+.++ ..|..+.+++.++-++-..+.+.+.++
T Consensus       110 lSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~  189 (349)
T KOG1443|consen  110 LSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRN  189 (349)
T ss_pred             eeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhc
Confidence            88877777889999999999885 8888877777778888888877766665 478888877777766666666666655


Q ss_pred             cC
Q 020256          286 TK  287 (328)
Q Consensus       286 ~~  287 (328)
                      .|
T Consensus       190 ~~  191 (349)
T KOG1443|consen  190 QP  191 (349)
T ss_pred             Cc
Confidence            43

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.33  E-value=0.0061  Score=59.57  Aligned_cols=132  Identities=15%  Similarity=0.061  Sum_probs=94.8

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-ccC-----ChhhHHHHHHHH--HHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-ARD-----DVKTRNAGIELG--LWVS  193 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~-~~~-----~~~~~~~~ll~G--~l~~  193 (328)
                      +..+|.++++++++++|.+.+..+....+.++.++..+=.+.+.++..+.+.. ++.     ++..-.....+|  +.++
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf  244 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF  244 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence            35789999999999999999999999999999888877777777776655442 221     111111222222  3344


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      ..|.+.-..+++++|....+=.-+..++..++..+ +|+++++..++|.++.++|+++...
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence            55666667788888775544445567777788865 6899999999999999999988654

Some of the sequences in this family are annotated as putative membrane proteins.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.28  E-value=0.0011  Score=54.88  Aligned_cols=108  Identities=17%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             HHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhcchH
Q 020256          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAG  209 (328)
Q Consensus       131 lla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l-~~~~~~l~~~aL~~tsa~  209 (328)
                      ++..++||.+.+++|.+..+.++..-.. |..-....++          +.++..  +++. +..+...|++.+...+.+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll----------~n~~y~--ipf~lNq~GSv~f~~~L~~~dlS   68 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL----------LNPKYI--IPFLLNQSGSVLFFLLLGSADLS   68 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH----------HhHHHH--HHHHHHHHHHHHHHHHHhcCCce
Confidence            3568899999999999887655443321 3222211111          122222  2332 234556677788888888


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHhhhhh
Q 020256          210 RASFI-SLFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML  251 (328)
Q Consensus       210 ~aavI-~~~~Pifv~lla~ll~eri-~~~~~igl~lg~iGv~ll  251 (328)
                      .+.-+ +++.-+++.+.+++++|+. +++.++|+++.+.|+.+.
T Consensus        69 lavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   69 LAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            88766 4788889999999888775 578899999999999764

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.00  E-value=0.027  Score=46.36  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhh
Q 020256          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML  251 (328)
Q Consensus       182 ~~~~ll~G~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll  251 (328)
                      +......-+.....+++...++++.|.+.+ ++-....-+.+.+++.+ +||+++..+++|+.+.++|++.+
T Consensus        35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            333333334445677888889999999988 55566777777788864 79999999999999999999876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.91  E-value=0.012  Score=48.26  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       190 ~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      +.....|.+...++++.|.+.+ ++-...-.+.+.+.+++ ++|+++..+++|+.+.++|++.+-.
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3344567888899999999988 56667777888888875 7999999999999999999987643

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.88  E-value=0.017  Score=47.25  Aligned_cols=63  Identities=11%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       190 ~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      +.+...+++...+++..|.+.+ ++-....-+.+.+++. ++||+++..+++|+.+.++|++.+-
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            3345677888889999999888 5556677777888886 5799999999999999999998764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.86  E-value=0.015  Score=48.73  Aligned_cols=64  Identities=14%  Similarity=0.285  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       190 ~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      +++...++++..++++.+.+.+ ++..+..-+.+.+++. +++|+++..+++|+.+.++|++++-.
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            3345677888899999999988 4445677788888886 57999999999999999999988744

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.85  E-value=0.018  Score=47.52  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          192 VSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      +...++++..+++..|.+.+ ++-.++.-+.+.+++++ ++|+++..+++|+.+.++|++++..
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44567777889999998887 44456667777788864 7999999999999999999998754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.83  E-value=0.058  Score=51.45  Aligned_cols=127  Identities=14%  Similarity=0.124  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHh--ccC----------ChhhHHHHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARD----------DVKTRNAGIELGLW  191 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~--~~~----------~~~~~~~~ll~G~l  191 (328)
                      |+++++++.++=|...+..+...+  +.++.+..++-.+++.++.++....  .+.          .+..+...++..+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999998876  5889999999999988888776665  321          11122333344444


Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      .+.+..+.+.-.+..++...+++..+--+++.+++.+ ++++++..+|+|+++.+.|+.+-.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHH
Confidence            3444444445567788888888888888888888865 699999999999999999997643

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.76  E-value=0.038  Score=52.46  Aligned_cols=117  Identities=17%  Similarity=0.003  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-H--hccCChhhHHHHHHHHHHHHHHHHHH
Q 020256          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-F--WARDDVKTRNAGIELGLWVSLGYFVE  199 (328)
Q Consensus       123 ~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~-~--~~~~~~~~~~~~ll~G~l~~~~~~l~  199 (328)
                      ..++++.++++.+.+.....+.|.  .+++|....+-. .++.++-..+. .  .+....+.-....+.|++...+..++
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPq-aiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~  212 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQ-AIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY  212 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHH-HHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence            357899999999999888888887  467887665533 33333222221 2  11122233345567888877788888


Q ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHH
Q 020256          200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVL  242 (328)
Q Consensus       200 ~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~  242 (328)
                      +.+.+....+.+-.+..+.++...+.+.+ +||+.+++++...+
T Consensus       213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            88999888888888888888888888864 79998877664333

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=96.25  E-value=0.12  Score=47.75  Aligned_cols=98  Identities=10%  Similarity=0.022  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-cc-----C-ChhhHHHHHHHHHHHHHHHHHHHH
Q 020256          129 LLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-AR-----D-DVKTRNAGIELGLWVSLGYFVEAL  201 (328)
Q Consensus       129 lllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~-~~-----~-~~~~~~~~ll~G~l~~~~~~l~~~  201 (328)
                      ..+.+++.|+...+..|...+. ++......-+. ...+..+.... ..     . ..++|...+..|+....+|.++..
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~  227 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI  227 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899888888886432 32222221111 11111111111 11     1 123666667777765678999999


Q ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256          202 GLLTSDAGRASFISLFTVIVVPLFDGM  228 (328)
Q Consensus       202 aL~~tsa~~aavI~~~~Pifv~lla~l  228 (328)
                      |+++.+++.++.+.++.|++..+++.+
T Consensus       228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~  254 (256)
T TIGR00688       228 AANRLPLNLLGLLQYIGPTIMMLCVSF  254 (256)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998865

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.17  E-value=0.028  Score=54.09  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL  201 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~~~~~l~~~  201 (328)
                      +...|.++.+++.++-|.+....|......+.   ...|---..   ...     .+++.|..++++   ...+..+.+.
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~~---~~~-----l~~~~W~~G~~~---~~~g~~~~~~   69 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSGG---RSY-----LRRPLWWIGLLL---MVLGEILNFV   69 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccchh---hHH-----HhhHHHHHHHHH---HhcchHHHHH
Confidence            45779999999999999999999986432221   000000000   000     011223333221   2345567778


Q ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       202 aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      ++.+.|++..+-+.++..++..+++. ++|||++++.++|.++.++|+.++.
T Consensus        70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            99999999999898999999999996 5799999999999999999997654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.07  E-value=0.47  Score=45.12  Aligned_cols=116  Identities=10%  Similarity=0.091  Sum_probs=84.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHH-hcCcCcHHH----HHHHHHHHHhhhhhhc
Q 020256          180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDGM-LGAIIPAHT----WFGVLISALGVGMLEC  253 (328)
Q Consensus       180 ~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~-~~~Pifv~lla~l-l~eri~~~~----~igl~lg~iGv~ll~~  253 (328)
                      +.+...++.|++...+...++.+.++..++.+.-+. .++-+...+++.+ ++|.-+..+    .+++++.++|+.+-..
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            566777888988888899999999998888776443 5666777778764 799766433    4577888888887765


Q ss_pred             CCC---------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 020256          254 SGS---------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVA  300 (328)
Q Consensus       254 ~g~---------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l  300 (328)
                      .+.         +...|.+..+++.+.|-.|.+..|-.  +.   ++.....-|.+
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~---~~~~~~lPqai  173 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV---SGWSAFLPQAI  173 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC---ChhHhHHHHHH
Confidence            431         13469999999999999999997653  23   44555555533

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.00  E-value=0.39  Score=41.01  Aligned_cols=123  Identities=12%  Similarity=0.065  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHhccC-Chh---hH-HHHHHHHHHHHHHHHHHHH
Q 020256          128 FLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-DVK---TR-NAGIELGLWVSLGYFVEAL  201 (328)
Q Consensus       128 llllla~llWG~s~i~~K~~~~~~~-P~~l~~~R~liA~llLl~~~~~~~~-~~~---~~-~~~ll~G~l~~~~~~l~~~  201 (328)
                      ++.+++..+-+....+--...+..+ |+.-+++-+..+.+++..+....+. +.+   .. ++..+-|++....-.+..+
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~   83 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII   83 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence            4445555555555444444445555 9999999999999998877665432 211   11 2222333333222344556


Q ss_pred             HHhhcchHHHHHHH-HHHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHhhhh
Q 020256          202 GLLTSDAGRASFIS-LFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGM  250 (328)
Q Consensus       202 aL~~tsa~~aavI~-~~~Pifv~lla~l--l---~eri~~~~~igl~lg~iGv~l  250 (328)
                      ......++.+..+. .-+.+...++..+  +   +++++..|++|+++.++|+.+
T Consensus        84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            66777777765443 4456666777764  3   567889999999999999864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.58  E-value=0.47  Score=46.69  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=75.6

Q ss_pred             chHHHHHHHHHHHHHhhhH-------HHHHHHh-ccCCHHHHHHHHHH---HHHHHHHH-HHH---hccCC------h--
Q 020256          123 KIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAIPFLP-FVF---WARDD------V--  179 (328)
Q Consensus       123 ~~~g~llllla~llWG~s~-------i~~K~~~-~~~~P~~l~~~R~l---iA~llLl~-~~~---~~~~~------~--  179 (328)
                      ..||++.++++.+..+...       +..+.+. .+.++.....-.++   +++++.-+ +..   +++++      +  
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            4679999888888887766       4444432 25666666655555   55554432 222   12111      1  


Q ss_pred             --hhHHHH----HHHHHHHHHHHHHHHHHHhhcchHHHHH---HH-HHHHHHHHHHHHHhcCcCc------HHHHHHHHH
Q 020256          180 --KTRNAG----IELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP------AHTWFGVLI  243 (328)
Q Consensus       180 --~~~~~~----ll~G~l~~~~~~l~~~aL~~tsa~~aav---I~-~~~Pifv~lla~ll~eri~------~~~~igl~l  243 (328)
                        +.+.+-    .+.|+..+..+.++.+|-...+...+.+   +. ++..++..+-+.++||+.+      +.-++|+++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHH
Confidence              112223    5556666666667777766654443333   33 5556666776777898765      344678888


Q ss_pred             HHHhhhhhh
Q 020256          244 SALGVGMLE  252 (328)
Q Consensus       244 g~iGv~ll~  252 (328)
                      -++|+.++.
T Consensus       332 iI~g~~lig  340 (345)
T PRK13499        332 IILAANIVG  340 (345)
T ss_pred             HHHHHHHHh
Confidence            888877664

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.17  E-value=0.98  Score=43.29  Aligned_cols=119  Identities=8%  Similarity=0.049  Sum_probs=83.7

Q ss_pred             HHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc---c-----CChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 020256          133 ITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA---R-----DDVKTRNAGIELGLWVSLGYFVEALGLL  204 (328)
Q Consensus       133 a~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~---~-----~~~~~~~~~ll~G~l~~~~~~l~~~aL~  204 (328)
                      .++-||..+..=|..  .+|+.+-...-.+.-.++-+.+++..   .     .+.+.+......|..-.....++..|-+
T Consensus       156 la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~  233 (293)
T COG2962         156 LALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAK  233 (293)
T ss_pred             HHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            345666666666653  45665554444444343333333322   1     1223455566778777778889999999


Q ss_pred             hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256          205 TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (328)
Q Consensus       205 ~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~  253 (328)
                      ..+-+..+++.|..|.+..+++.+ ++|+++..+.++-+..-+|+++...
T Consensus       234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999976 5899999999988888888876544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.16  E-value=0.14  Score=40.68  Aligned_cols=53  Identities=17%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHH
Q 020256          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLI  243 (328)
Q Consensus       191 l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~-ll~eri~~~~~igl~l  243 (328)
                      .+...++++..++++.+.+.+ ++..++..+.+.+++. +++|+++..+++|+.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            344567788889999999988 5666788888888886 4799999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.02  E-value=0.014  Score=55.28  Aligned_cols=124  Identities=15%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-c----cCChhhHHHHHHHHHHHHHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-A----RDDVKTRNAGIELGLWVSLGYFVEA  200 (328)
Q Consensus       126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~-~----~~~~~~~~~~ll~G~l~~~~~~l~~  200 (328)
                      |....+.+++.-+..++..|+...+.+.+..+.+=.+++.+.-++.+.. .    ...+++|.....+|++.+.+..+..
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllT  271 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLT  271 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHH
Confidence            4566667777777889999988666655554444444444433322221 1    1235666666678888888899999


Q ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhh
Q 020256          201 LGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG  249 (328)
Q Consensus       201 ~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~  249 (328)
                      .|+|.-.++-.++..++..++..+... ++++.++...|.|++..+...+
T Consensus       272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v  321 (346)
T KOG4510|consen  272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV  321 (346)
T ss_pred             HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence            999999999999999999999988886 4699999999988776554443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.39  E-value=0.32  Score=45.50  Aligned_cols=132  Identities=13%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---C-ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Q 020256          154 ASFCAVRFVMSAIPFLPFVFWAR---D-DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML  229 (328)
Q Consensus       154 ~~l~~~R~liA~llLl~~~~~~~---~-~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll  229 (328)
                      ..++++....-.+.-=.+...++   . +.+.+... ...+.+...+.....++++.+=-...+--+.-|+=+++++.++
T Consensus        54 laLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~Ya-Acs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~  132 (337)
T KOG1580|consen   54 LALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYA-ACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF  132 (337)
T ss_pred             HHHHHHHHHHHHHHHHhheeecccccccCCcchHHH-HHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence            44555665555544322222222   1 12233322 2333332334444567888775444444566788888888765


Q ss_pred             -cCcCcHHHHHHHHHHHHhhhhhhcCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020256          230 -GAIIPAHTWFGVLISALGVGMLECSG--------SPPSVGDFLNFLSAIFFGIHMLRTERISRST  286 (328)
Q Consensus       230 -~eri~~~~~igl~lg~iGv~ll~~~g--------~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~  286 (328)
                       +++.++++..+++..++||++....+        .....|.++.++|--.=++-.....|....+
T Consensus       133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y  198 (337)
T KOG1580|consen  133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY  198 (337)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhh
Confidence             77889999999999999999876542        1357999999999887777777777766554

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=93.67  E-value=3  Score=40.96  Aligned_cols=158  Identities=11%  Similarity=0.048  Sum_probs=100.9

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc----c-------CChhhHHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA----R-------DDVKTRNAGIELGL  190 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~----~-------~~~~~~~~~ll~G~  190 (328)
                      .-+.|+++..++.+.=|+.++-.|..- +.+= +..+.=+.+-+-+++|+...-    .       .+...+....+.|+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk-~WsW-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKVK-GWSW-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhcC-CccH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            347899999999999999999999843 3322 222222333344445554321    1       12345566677888


Q ss_pred             HHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHh--------cCcCcHHHHHHHHHHHHhhhhhhcCC------
Q 020256          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGML--------GAIIPAHTWFGVLISALGVGMLECSG------  255 (328)
Q Consensus       191 l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~ll--------~eri~~~~~igl~lg~iGv~ll~~~g------  255 (328)
                      +-..+-..+-.+++|...+.. ++...+.-++-.++-.++        ..+-....++|+++.++|++++-..|      
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~  161 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE  161 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence            766666666677778766555 344455554444443332        22333577899999999999875542      


Q ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 020256          256 -------SPPSVGDFLNFLSAIFFGIHMLRTER  281 (328)
Q Consensus       256 -------~~~~~G~ll~LlaAl~~A~~~I~~rk  281 (328)
                             .++..|.+++++|.+.-|++.+-...
T Consensus       162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a  194 (344)
T PF06379_consen  162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA  194 (344)
T ss_pred             hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence                   13468999999999999988876543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.29  E-value=4.5  Score=35.22  Aligned_cols=126  Identities=10%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHhcc-C-C----hhhHHHHHHHHHHHHHHHH
Q 020256          125 RSIFLLNVITIVYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWAR-D-D----VKTRNAGIELGLWVSLGYF  197 (328)
Q Consensus       125 ~g~llllla~llWG~s~i~~K~~~~~~-~P~~l~~~R~liA~llLl~~~~~~~-~-~----~~~~~~~ll~G~l~~~~~~  197 (328)
                      ...+..+++..+-.....+.-...... +|+.-.++-|+.+..+++.+.+.+. . .    .+.-++...-| .++..|.
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG-~lGa~~v   83 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGG-LLGAIFV   83 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHcc-chhhhhh
Confidence            344555555555554444443433444 5999999999999988887766532 1 1    11112222223 2222222


Q ss_pred             H-HHHHHhhcc-hHHHHHHHHHHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHhhhhh
Q 020256          198 V-EALGLLTSD-AGRASFISLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGML  251 (328)
Q Consensus       198 l-~~~aL~~ts-a~~aavI~~~~Pifv~lla~l--l---~eri~~~~~igl~lg~iGv~ll  251 (328)
                      + ......... +....++..-+.+...++..+  +   +++++..+++|+++.++|++++
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            1 112222232 333345556677777777754  3   3567899999999999995554

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.19  E-value=0.19  Score=47.96  Aligned_cols=119  Identities=15%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCC---CCC-cHHHHHHHHHHHHH
Q 020256          198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG---SPP-SVGDFLNFLSAIFF  272 (328)
Q Consensus       198 l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g---~~~-~~G~ll~LlaAl~~  272 (328)
                      +-+.+..+-..+.     ++.-+|..++.++ +|++-+..-..+.++.++|-.+=...+   +.+ ..|.+++++|.++-
T Consensus       123 L~yVgVaFYyvgR-----sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v  197 (347)
T KOG1442|consen  123 LKYVGVAFYYVGR-----SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV  197 (347)
T ss_pred             hhhcceEEEEecc-----chhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence            3344444444444     4566788889975 688877777777777777765433222   123 68999999999999


Q ss_pred             HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhhhcc-ccccccc
Q 020256          273 GIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHA-QKIFNFQ  322 (328)
Q Consensus       273 A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~~~~-~~~~~f~  322 (328)
                      |+..+..||..... ......+++|....+.+..+|.....++ +.+.+|+
T Consensus       198 Alnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~  247 (347)
T KOG1442|consen  198 ALNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP  247 (347)
T ss_pred             HHHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc
Confidence            99999999876554 3356788999999999988888777765 4666655

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.13  E-value=8.7  Score=37.26  Aligned_cols=156  Identities=12%  Similarity=0.118  Sum_probs=102.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM  228 (328)
Q Consensus       152 ~P~~l~~~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l  228 (328)
                      ++..+++..-+.+.+.-..++..++   ..++.|.....+++.....-.+.+.+++|.+=-.-.+-=+.-.+=++++..+
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L  129 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL  129 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence            5667777777776666544443332   2334466666777777667788999999986322222222223334455555


Q ss_pred             -hcCcCcHHHHHHHHHHHHhhhhhhc-CC-C--------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 020256          229 -LGAIIPAHTWFGVLISALGVGMLEC-SG-S--------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY  297 (328)
Q Consensus       229 -l~eri~~~~~igl~lg~iGv~ll~~-~g-~--------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~  297 (328)
                       .++|.+..+.+...+.-.|+.+... +. +        +..+|.++....-+.=++-+...+++-++. ..+.+.++++
T Consensus       130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~  208 (327)
T KOG1581|consen  130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFG  208 (327)
T ss_pred             HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHH
Confidence             5889998888888888889876433 21 1        235888888888877777777788877754 6678888888


Q ss_pred             HHHHHHHHHHH
Q 020256          298 EVAYLSEKELF  308 (328)
Q Consensus       298 q~l~aai~ll~  308 (328)
                      ..++.++....
T Consensus       209 vNLf~~i~~~~  219 (327)
T KOG1581|consen  209 VNLFSAILNGT  219 (327)
T ss_pred             HHHHHHHHHHH
Confidence            87777776544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=92.42  E-value=1.1  Score=44.59  Aligned_cols=133  Identities=13%  Similarity=0.075  Sum_probs=91.5

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHhc---cCCh------hhHHHHHHHH
Q 020256          123 KIRSIFLLNVITIVYASDIPILKAAEEI----MHPASFCAVRFVMSAIPFLPFVFWA---RDDV------KTRNAGIELG  189 (328)
Q Consensus       123 ~~~g~llllla~llWG~s~i~~K~~~~~----~~P~~l~~~R~liA~llLl~~~~~~---~~~~------~~~~~~ll~G  189 (328)
                      ...|.++.+++++++|..-++.|.-.++    +|--.+..+=.++..++++|.++.-   +.++      .+....++.|
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~  324 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN  324 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence            3789999999999999999999986542    5555555555666677777554421   2111      1222223334


Q ss_pred             HHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHhhhhhhcCC
Q 020256          190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSG  255 (328)
Q Consensus       190 ~l~-~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll-~eri~~~~~igl~lg~iGv~ll~~~g  255 (328)
                      +.. .+.-+++.+|.-.+++-.+++-++++.-+.++...++ +++++...++|.+..++|-+++...+
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            332 3456888899999998888877776665666666777 55678999999999999988776543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=91.63  E-value=0.037  Score=51.79  Aligned_cols=155  Identities=10%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHHHHHHHHH
Q 020256          126 SIFLLNVITIVYASDIPIL-KAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEALG  202 (328)
Q Consensus       126 g~llllla~llWG~s~i~~-K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~--~~~~~~~~~ll~G~l~~~~~~l~~~a  202 (328)
                      .++..++-++.||+...+. |.   +=+|.+-..---+-|.++-+.+.+..+  .+.+.+...++.|.+...+...++-+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka   79 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA   79 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence            4677788899999875543 43   233443332222222222222222222  34556667777888877788889999


Q ss_pred             HhhcchHHHHHHH-HHHHHHHHHHHHH-hcCcCcH----HHHHHHHHHHHhhhhhhcCCC---------CCcHHHHHHHH
Q 020256          203 LLTSDAGRASFIS-LFTVIVVPLFDGM-LGAIIPA----HTWFGVLISALGVGMLECSGS---------PPSVGDFLNFL  267 (328)
Q Consensus       203 L~~tsa~~aavI~-~~~Pifv~lla~l-l~eri~~----~~~igl~lg~iGv~ll~~~g~---------~~~~G~ll~Ll  267 (328)
                      +++..++++.-+. .++-+-+.+++.+ ++|.-+.    ...+++++.++|+.+-...+.         ++..|....+.
T Consensus        80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i  159 (288)
T COG4975          80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI  159 (288)
T ss_pred             eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence            9999888876443 4555566666654 6886553    234667777788876554321         23467777788


Q ss_pred             HHHHHHHHHHHHHHhh
Q 020256          268 SAIFFGIHMLRTERIS  283 (328)
Q Consensus       268 aAl~~A~~~I~~rkl~  283 (328)
                      |.++|-.|.++.+...
T Consensus       160 St~GYv~yvvl~~~f~  175 (288)
T COG4975         160 STLGYVGYVVLFQLFD  175 (288)
T ss_pred             eccceeeeEeeecccc
Confidence            8888888887776654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=91.63  E-value=1.3  Score=41.16  Aligned_cols=168  Identities=11%  Similarity=0.045  Sum_probs=103.7

Q ss_pred             HHHHHHHhccC--C-HHHHHHHHHHHHHHHHHHHHHhc----c-CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 020256          141 IPILKAAEEIM--H-PASFCAVRFVMSAIPFLPFVFWA----R-DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRAS  212 (328)
Q Consensus       141 ~i~~K~~~~~~--~-P~~l~~~R~liA~llLl~~~~~~----~-~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aa  212 (328)
                      .+.-|+.++..  . -+.+.+++.+...+.++.+-..+    | .+.+.|..   ..+++..--+.-.-+++|.+...-+
T Consensus        22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~Wfp---iSfLLv~MIyt~SKsLqyL~vpiYT   98 (309)
T COG5070          22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFP---ISFLLVVMIYTSSKSLQYLAVPIYT   98 (309)
T ss_pred             HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcC---HHHHHHHHHHhcccceeeeeeeHHH
Confidence            34456665532  2 35666777776666555432222    1 12233322   2222211112233578888888777


Q ss_pred             HHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhcCCC--------CCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 020256          213 FISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAIFFGIHMLRTERIS  283 (328)
Q Consensus       213 vI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~~g~--------~~~~G~ll~LlaAl~~A~~~I~~rkl~  283 (328)
                      +.-.+..+.++.... ++|.|++.......++.++.-+.-..++.        .++.|.+|+..-.+.-|.+.+..|+..
T Consensus        99 iFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri  178 (309)
T COG5070          99 IFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRI  178 (309)
T ss_pred             HhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhh
Confidence            777777777777775 57999998888887777776665555442        357999999999999999999999866


Q ss_pred             hccCCCChHHHHHHHHHHHHHHHHHHhhh
Q 020256          284 RSTKKENFLPLLGYEVAYLSEKELFSYDS  312 (328)
Q Consensus       284 ~~~~~~~~l~l~~~q~l~aai~ll~~~~~  312 (328)
                      +-. ...-...++|..+.+.-+++.....
T Consensus       179 ~lt-Nf~d~dtmfYnNllslPiL~~~s~~  206 (309)
T COG5070         179 KLT-NFKDFDTMFYNNLLSLPILLSFSFL  206 (309)
T ss_pred             ccc-ccchhhHHHHhhhHHHHHHHHHHHH
Confidence            533 2234556777776665444444333

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=90.19  E-value=0.87  Score=44.32  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=90.4

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHhc----cCCHHHHHHHHHHHHHHHHH-HHHHhccCCh------hhH----HHHHH
Q 020256          123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDV------KTR----NAGIE  187 (328)
Q Consensus       123 ~~~g~llllla~llWG~s~i~~K~~~~----~~~P~~l~~~R~liA~llLl-~~~~~~~~~~------~~~----~~~ll  187 (328)
                      ...|.+....+.+......++.|....    +++++.+...---++.+.++ |+......+.      +.|    ....+
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence            367999999999999999999998883    48999998888888888888 8765432111      111    11122


Q ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhh
Q 020256          188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (328)
Q Consensus       188 ~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~  252 (328)
                      ..++.+..+...++-+..+++-.-.+...+==+++.+.++ +++++++..+.+|.+++++|+.+-.
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            2233333445566777778777666555444444555665 4688888999999999999998653

>TIGR00803 nst UDP-galactose transporter

Probab=89.85  E-value=3.3  Score=37.37  Aligned_cols=59  Identities=17%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l  250 (328)
                      ...+..+..+-+++.++..-++...+.++++.+++.+ ++|+++..+|+|+.+.+.|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3344455666788999998999999999999999974 6999999999999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=88.22  E-value=1.7  Score=36.46  Aligned_cols=54  Identities=22%  Similarity=0.145  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc----CCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 020256          261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEVAYLSEKELFSYDSFH  314 (328)
Q Consensus       261 G~ll~LlaAl~~A~~~I~~rkl~~~~----~~~~~l~l~~~q~l~aai~ll~~~~~~~  314 (328)
                      |.+++++|.++.|++.++.|+..++.    ...++..+..+....+.+.+++.....+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e   58 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLE   58 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67899999999999999999988874    4678899999988888888877665554

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.81  E-value=8.4  Score=37.36  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=85.2

Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhcc----------CChhhHHHHHHHH
Q 020256          122 KKIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELG  189 (328)
Q Consensus       122 ~~~~g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~~~----------~~~~~~~~~ll~G  189 (328)
                      +...|+++++.-.++=|.+....+....  .++++.+.+.--+...+.=.......+          .+++.++..++..
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            3467888888777777888777777665  488888877766666655444433222          1334456666777


Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256          190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (328)
Q Consensus       190 ~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l  250 (328)
                      .+...+..+.++-++.-.+-.-+.|+-+==++..+++.+ ++++++..+|+|+.+.|.|+.+
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            666666655555555433333344444555666677764 7999999999999999988864

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=86.83  E-value=5.9  Score=32.65  Aligned_cols=110  Identities=12%  Similarity=0.092  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHhccCC----H--HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 020256          128 FLLNVITIVYASDIPILKAAEEIMH----P--ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL  201 (328)
Q Consensus       128 llllla~llWG~s~i~~K~~~~~~~----P--~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~~~~~l~~~  201 (328)
                      ..++...++||.+.+++|.+..+.+    |  ....++|-.....          .+++.+...   + +.-.+..+|++
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~----------l~w~Y~iPF---l-lNqcgSaly~~   71 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF----------LNWEYLIPF---L-LNQCGSALYYL   71 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH----------HhHHHHHHH---H-HHHhhHHHHHH
Confidence            4467788999999999998765432    2  1111111111000          011222221   1 12234456667


Q ss_pred             HHhhcchHHHH-HHHHHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHhhhhh
Q 020256          202 GLLTSDAGRAS-FISLFTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGML  251 (328)
Q Consensus       202 aL~~tsa~~aa-vI~~~~Pifv~lla~ll~eri~-~~~~igl~lg~iGv~ll  251 (328)
                      -++.++-+.+. +-+++.-.|+.+.+..++|+.+ ++.++|..+...|+.+.
T Consensus        72 tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   72 TLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            77777766654 3456677888888888999987 67789999999998764

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=81.54  E-value=10  Score=36.42  Aligned_cols=83  Identities=10%  Similarity=0.018  Sum_probs=58.3

Q ss_pred             HHHHHh-cCcCcHHHHHHHHHHHHhhhhhhcCCC----CC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 020256          224 LFDGML-GAIIPAHTWFGVLISALGVGMLECSGS----PP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY  297 (328)
Q Consensus       224 lla~ll-~eri~~~~~igl~lg~iGv~ll~~~g~----~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~  297 (328)
                      +.+.++ ++|.+...+++..+..+|+++....+.    ++ ..|..+.-++-++=|+---+.+|..+.. +.+...+.++
T Consensus       148 iggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~-~~ss~Emvfy  226 (367)
T KOG1582|consen  148 IGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMN-PASSSEMVFY  226 (367)
T ss_pred             heeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhC-CCCcceEEEe
Confidence            344454 788999999999999999988766553    33 4788887777777777767777777665 4455666666


Q ss_pred             HHHHHHHHHH
Q 020256          298 EVAYLSEKEL  307 (328)
Q Consensus       298 q~l~aai~ll  307 (328)
                      ...++...++
T Consensus       227 Sy~iG~vflf  236 (367)
T KOG1582|consen  227 SYGIGFVFLF  236 (367)
T ss_pred             eecccHHHHH
Confidence            6666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.01
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.81

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.01  E-value=9.3e-05  Score=59.55  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256          192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~aavI-~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~  254 (328)
                      ....+.++..++++.+.+.+.-+ .++.|+++.+++++ +||+++..+++|+++.++|++++...
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45567888889999999999777 79999999999975 79999999999999999999987653

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.81  E-value=5.3e-05  Score=63.56  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256          192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS  254 (328)
Q Consensus       192 ~~~~~~l~~~aL~~tsa~~aavI-~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~  254 (328)
                      ....|+++..++++.+++.+..+ .++.|+++.+++++ ++|+++..+++|+++.++|++++...
T Consensus        40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45678889999999999999877 79999999999974 79999999999999999999988553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00