Citrus Sinensis ID: 020275

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKERS
cccccccHHHHHHHHHHHcccEEEEccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHcccEEEEEEccccHHcHHHHHHHHHHcccccEEEEccccccccccccEEccccccccHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHcccEEEEccHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccEEEEEEEEccccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccEEEEccccccccccccEccccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHccc
mgkenttassLDDLIEKaggcavidggfatqlethgasindpLWSALylikqphlvKRVHLEYLEAGADILvtssyqatipgflsrglSIEEAESLLEKSVTLAVEARDKFWDAvkkvpghnynRALVAASIGSYgayladgseysgnygpgvdleklKDFHRRRLQVLVEsgpdllafetIPNKLEAQALVELLEEeniqipswicfssvdgenapsgesfKECLDIINKSGkvnavgincappqFVENLICYFKELTKKAIVvypnsgevwdgrakkwlpskclgdgkfesFATRWRDsgakliggccrttpsTIQAVSKVLKERS
MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAvkkvpghnyNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYpnsgevwdgrakkwlpskclgdGKFESFATRWRDSGAkliggccrttpstiqAVSKVLKERS
MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKleaqalvelleeeNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKERS
*************LIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDG*******SFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQ**********
*************LIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE**
**********LDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKERS
*****TTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE**
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKERS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
A4ZGQ8326 Homocysteine S-methyltran N/A no 0.993 1.0 0.788 1e-155
Q9SDL7326 Homocysteine S-methyltran yes no 0.966 0.972 0.807 1e-153
Q9FUN0323 Homocysteine S-methyltran N/A no 0.969 0.984 0.707 1e-136
Q8LAX0347 Homocysteine S-methyltran no no 0.975 0.922 0.565 1e-106
Q9M1W4333 Homocysteine S-methyltran no no 0.954 0.939 0.563 1e-105
Q9FUM8338 Homocysteine S-methyltran N/A no 0.951 0.923 0.576 1e-102
Q9FUM9339 Homocysteine S-methyltran N/A no 0.951 0.920 0.573 1e-101
Q4VNK0346 Selenocysteine Se-methylt N/A no 0.969 0.919 0.560 2e-99
P56707338 Selenocysteine methyltran N/A no 0.957 0.928 0.531 5e-98
Q9FUM7342 Homocysteine S-methyltran N/A no 0.975 0.935 0.532 2e-97
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/327 (78%), Positives = 294/327 (89%), Gaps = 1/327 (0%)

Query: 1   MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVH 60
           MG E  +A  L+DLIEK GGCAV+DGGFATQLE HGA+INDPLWSA+ LIK P L+KRVH
Sbjct: 1   MGLEKKSAL-LEDLIEKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKDPELIKRVH 59

Query: 61  LEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPG 120
           +EYLEAGAD++VTSSYQATIPGFLSRGLS+EE+ESLL+KSV LAVEARD+FWD V K  G
Sbjct: 60  MEYLEAGADVVVTSSYQATIPGFLSRGLSMEESESLLQKSVKLAVEARDRFWDKVSKTSG 119

Query: 121 HNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE 180
           H+YNRALVAASIGSYGAYLADGSEYSG+YG  V L+KLKDFHRRR+QVLVE+ PDLLAFE
Sbjct: 120 HSYNRALVAASIGSYGAYLADGSEYSGSYGEDVSLDKLKDFHRRRIQVLVEASPDLLAFE 179

Query: 181 TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240
           TIPNKLEAQA VELLEEEN+QIP+WICF+SVDGENAPSGESF+ECL+ +NKS  + AVGI
Sbjct: 180 TIPNKLEAQACVELLEEENVQIPAWICFTSVDGENAPSGESFQECLETLNKSNNICAVGI 239

Query: 241 NCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRD 300
           NCAPPQF++NLI  F +LT+KAIVVYPNSGEVWDG+AKKWLPS+C GD +FE FAT+WRD
Sbjct: 240 NCAPPQFMDNLIRKFSKLTQKAIVVYPNSGEVWDGKAKKWLPSQCFGDAEFEMFATKWRD 299

Query: 301 SGAKLIGGCCRTTPSTIQAVSKVLKER 327
            GAKLIGGCCRTTPSTI+A+S+ LK R
Sbjct: 300 LGAKLIGGCCRTTPSTIKAISRDLKRR 326
Catalyzes methyl transfer from S-methylmethionine to homocysteine. The highest preference is for DL-homocysteine >> DL-cysteine. Has no selenocysteine methyltransferase activity.
Brassica oleracea var. italica (taxid: 36774)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2 Back     alignment and function description
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1 Back     alignment and function description
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
225423971325 PREDICTED: homocysteine S-methyltransfer 0.990 1.0 0.853 1e-161
255581651327 5-methyltetrahydrofolate:homocysteine me 0.993 0.996 0.819 1e-156
224111688329 homocysteine s-methyltransferase [Populu 0.969 0.966 0.836 1e-155
297814814326 ATHMT-1/HMT-1 [Arabidopsis lyrata subsp. 0.993 1.0 0.801 1e-154
334306355326 RecName: Full=Homocysteine S-methyltrans 0.993 1.0 0.788 1e-153
15230929326 homocysteine S-methyltransferase 1 [Arab 0.966 0.972 0.807 1e-152
449434616328 PREDICTED: homocysteine S-methyltransfer 0.996 0.996 0.786 1e-151
356526645323 PREDICTED: homocysteine S-methyltransfer 0.969 0.984 0.801 1e-150
372477767324 homocysteine s-methytransferase, partial 0.987 1.0 0.765 1e-148
388491598328 unknown [Lotus japonicus] 0.993 0.993 0.785 1e-148
>gi|225423971|ref|XP_002282549.1| PREDICTED: homocysteine S-methyltransferase 1 [Vitis vinifera] gi|297737821|emb|CBI27022.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/328 (85%), Positives = 300/328 (91%), Gaps = 3/328 (0%)

Query: 1   MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVH 60
           MGK   T+S L+DLIEKAGGCAV+DGGFATQLE HGA+INDPLWSAL LIK P L+KRVH
Sbjct: 1   MGK---TSSLLEDLIEKAGGCAVVDGGFATQLEIHGATINDPLWSALCLIKDPDLIKRVH 57

Query: 61  LEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPG 120
           LEYLEAGADILVTSSYQATIPGFLS+GLSIEE E LLE+SV LAVEARDKFWD  K+VPG
Sbjct: 58  LEYLEAGADILVTSSYQATIPGFLSKGLSIEEGELLLERSVRLAVEARDKFWDVTKRVPG 117

Query: 121 HNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE 180
           H YNRALVAASIGSYGAYLADGSEYSG YGP ++L+KLKDFHRRRLQVLV S PDLLAFE
Sbjct: 118 HGYNRALVAASIGSYGAYLADGSEYSGCYGPDMNLDKLKDFHRRRLQVLVRSCPDLLAFE 177

Query: 181 TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240
           TIPNKLEAQA VELLEEEN+QIPSWICFSSVDGENAPSGESFKECLDIINKS KVNAVGI
Sbjct: 178 TIPNKLEAQACVELLEEENVQIPSWICFSSVDGENAPSGESFKECLDIINKSKKVNAVGI 237

Query: 241 NCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRD 300
           NCAPP F+E+LIC FKELT+K IVVYPNSGEVWDGRAK+WLPSKC GD KFE +AT+WRD
Sbjct: 238 NCAPPHFLESLICKFKELTEKPIVVYPNSGEVWDGRAKRWLPSKCFGDDKFELYATKWRD 297

Query: 301 SGAKLIGGCCRTTPSTIQAVSKVLKERS 328
            GAKLIGGCCRTTPSTI+A+SKVLKE S
Sbjct: 298 LGAKLIGGCCRTTPSTIRAISKVLKEMS 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581651|ref|XP_002531629.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] gi|223528747|gb|EEF30757.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224111688|ref|XP_002315941.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222864981|gb|EEF02112.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297814814|ref|XP_002875290.1| ATHMT-1/HMT-1 [Arabidopsis lyrata subsp. lyrata] gi|297321128|gb|EFH51549.1| ATHMT-1/HMT-1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334306355|sp|A4ZGQ8.1|HMT1_BRAOT RecName: Full=Homocysteine S-methyltransferase 1; Short=BoHMT1 gi|110468086|gb|ABG74913.1| homocysteine methyltransferase 1 [Brassica oleracea var. italica] Back     alignment and taxonomy information
>gi|15230929|ref|NP_189219.1| homocysteine S-methyltransferase 1 [Arabidopsis thaliana] gi|50400681|sp|Q9SDL7.1|HMT1_ARATH RecName: Full=Homocysteine S-methyltransferase 1; AltName: Full=S-methylmethionine:homocysteine methyltransferase 1; Short=AtHMT-1; Short=SMM:Hcy S-methyltransferase 1 gi|6685161|gb|AAF23821.1|AF219222_1 homocysteine S-methyltransferase AtHMT-1 [Arabidopsis thaliana] gi|9279594|dbj|BAB01052.1| homocysteine S-methyltransferase AtHMT-1 [Arabidopsis thaliana] gi|17473823|gb|AAL38339.1| homocysteine S-methyltransferase AtHMT-1 [Arabidopsis thaliana] gi|20148551|gb|AAM10166.1| homocysteine S-methyltransferase AtHMT-1 [Arabidopsis thaliana] gi|332643566|gb|AEE77087.1| homocysteine S-methyltransferase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434616|ref|XP_004135092.1| PREDICTED: homocysteine S-methyltransferase 1-like [Cucumis sativus] gi|449493450|ref|XP_004159294.1| PREDICTED: homocysteine S-methyltransferase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526645|ref|XP_003531927.1| PREDICTED: homocysteine S-methyltransferase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|372477767|gb|AEX97078.1| homocysteine s-methytransferase, partial [Malus x domestica] Back     alignment and taxonomy information
>gi|388491598|gb|AFK33865.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
UNIPROTKB|A4ZGQ8326 HMT1 "Homocysteine S-methyltra 0.993 1.0 0.752 1.6e-134
TAIR|locus:2092120326 HMT-1 [Arabidopsis thaliana (t 0.966 0.972 0.769 1.4e-133
TAIR|locus:2094419347 HMT3 "homocysteine S-methyltra 0.984 0.930 0.537 3e-92
TAIR|locus:2077234333 HMT2 "homocysteine methyltrans 0.972 0.957 0.543 2.1e-91
UNIPROTKB|Q4VNK0346 SMT "Selenocysteine Se-methylt 0.978 0.927 0.530 1.6e-88
UNIPROTKB|Q47690310 mmuM [Escherichia coli K-12 (t 0.887 0.938 0.389 1.7e-50
ZFIN|ZDB-GENE-030131-9545311 zgc:172121 "zgc:172121" [Danio 0.893 0.942 0.370 1.4e-48
FB|FBgn0032726331 CG10621 [Drosophila melanogast 0.911 0.903 0.333 9.3e-43
FB|FBgn0032727331 CG10623 [Drosophila melanogast 0.871 0.864 0.326 2.9e-39
CGD|CAL0004923311 SAM4 [Candida albicans (taxid: 0.905 0.954 0.318 3.7e-32
UNIPROTKB|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
 Score = 1318 (469.0 bits), Expect = 1.6e-134, P = 1.6e-134
 Identities = 246/327 (75%), Positives = 282/327 (86%)

Query:     1 MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVH 60
             MG E  +A  L+DLIEK GGCAV+DGGFATQLE HGA+INDPLWSA+ LIK P L+KRVH
Sbjct:     1 MGLEKKSAL-LEDLIEKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKDPELIKRVH 59

Query:    61 LEYLEAGADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPG 120
             +EYLEAGAD++VTSSYQATIPGFLSRGLS+EE+ESLL+KSV LAVEARD+FWD V K  G
Sbjct:    60 MEYLEAGADVVVTSSYQATIPGFLSRGLSMEESESLLQKSVKLAVEARDRFWDKVSKTSG 119

Query:   121 HNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE 180
             H+YNRALVAASIGSYGAYLADGSEYSG+YG  V L+KLKDFHRRR+QVLVE+ PDLLAFE
Sbjct:   120 HSYNRALVAASIGSYGAYLADGSEYSGSYGEDVSLDKLKDFHRRRIQVLVEASPDLLAFE 179

Query:   181 TIPNKXXXXXXXXXXXXXNIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240
             TIPNK             N+QIP+WICF+SVDGENAPSGESF+ECL+ +NKS  + AVGI
Sbjct:   180 TIPNKLEAQACVELLEEENVQIPAWICFTSVDGENAPSGESFQECLETLNKSNNICAVGI 239

Query:   241 NCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRD 300
             NCAPPQF++NLI  F +LT+KAIVVYPNSGEVWDG+AKKWLPS+C GD +FE FAT+WRD
Sbjct:   240 NCAPPQFMDNLIRKFSKLTQKAIVVYPNSGEVWDGKAKKWLPSQCFGDAEFEMFATKWRD 299

Query:   301 SGAKLIGGCCRTTPSTIQAVSKVLKER 327
              GAKLIGGCCRTTPSTI+A+S+ LK R
Sbjct:   300 LGAKLIGGCCRTTPSTIKAISRDLKRR 326
GO:0008898 "homocysteine S-methyltransferase activity" evidence=IDA
GO:0032259 "methylation" evidence=IDA
TAIR|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
UNIPROTKB|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0004923 SAM4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4ZGQ8HMT1_BRAOT2, ., 1, ., 1, ., 1, 00.78890.99391.0N/Ano
Q9SDL7HMT1_ARATH2, ., 1, ., 1, ., 1, 00.80750.96640.9723yesno
Q9FUM9HMT2_MAIZE2, ., 1, ., 1, ., 1, 00.57370.95120.9203N/Ano
Q9FUN0HMT1_MAIZE2, ., 1, ., 1, ., 1, 00.70750.96950.9845N/Ano
O31463HMT_BACSU2, ., 1, ., 1, ., 1, 00.46150.89020.9269yesno
P56707SMTA_ASTBI2, ., 1, ., 1, ., n, 30.53100.95730.9289N/Ano
Q4VNK0SMTA_BRAOT2, ., 1, ., 1, ., n, 30.56070.96950.9190N/Ano
Q9FUM8HMT3_MAIZE2, ., 1, ., 1, ., 1, 00.57690.95120.9230N/Ano
Q9FUM7HMT4_MAIZE2, ., 1, ., 1, ., 1, 00.53270.97560.9356N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.983
4th Layer2.1.1.100.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030336001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (325 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000669001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (403 aa)
     •• 0.918
GSVIVG00031656001
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (445 aa)
     •• 0.912
GSVIVG00015916001
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (444 aa)
     •• 0.911
METK5
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
     •• 0.907
METK4
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •• 0.907
METK2
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •• 0.907
METK3
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (389 aa)
     •• 0.907
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
     •• 0.907
GSVIVG00021002001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (500 aa)
     •• 0.906
GSVIVG00000520001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (438 aa)
     •• 0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
PLN02489335 PLN02489, PLN02489, homocysteine S-methyltransfera 0.0
PRK09485304 PRK09485, mmuM, homocysteine methyltransferase; Pr 1e-139
COG2040300 COG2040, MHT1, Homocysteine/selenocysteine methyla 2e-91
pfam02574303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 7e-87
PRK08645 612 PRK08645, PRK08645, bifunctional homocysteine S-me 9e-35
COG0646311 COG0646, MetH, Methionine synthase I (cobalamin-de 9e-31
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 7e-18
PRK09490 1229 PRK09490, metH, B12-dependent methionine synthase; 2e-16
PRK07534336 PRK07534, PRK07534, methionine synthase I; Validat 1e-09
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information 
 Score =  593 bits (1532), Expect = 0.0
 Identities = 214/328 (65%), Positives = 255/328 (77%), Gaps = 6/328 (1%)

Query: 7   TASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEA 66
            +S L+DL+ +AGGCAVIDGGFAT+LE HGA +NDPLWSA  LI  PHL+++VHL+YLEA
Sbjct: 8   MSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEA 67

Query: 67  GADILVTSSYQATIPGFLSRGLSIEEAESLLEKSVTLAVEARDKFWDA------VKKVPG 120
           GADI++T+SYQATI GF SRGLS EE+E+LL KSV +A EARD FWD        +    
Sbjct: 68  GADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRE 127

Query: 121 HNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFE 180
            +Y   LVAASIGSYGAYLADGSEYSG+YGP V LEKLKDFHRRRLQVL E+GPDL+AFE
Sbjct: 128 LSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFE 187

Query: 181 TIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGI 240
           TIPNKLEAQA VELLEEENI+IP+WI F+S DG N  SG+S  EC  I +   KV AVGI
Sbjct: 188 TIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGI 247

Query: 241 NCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRD 300
           NC PP+F+  LI   +++T K IVVYPNSGE +DG AK+W+ S  + D  F S+  +WRD
Sbjct: 248 NCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRD 307

Query: 301 SGAKLIGGCCRTTPSTIQAVSKVLKERS 328
           +GA LIGGCCRTTP+TI+A+SK L ER 
Sbjct: 308 AGASLIGGCCRTTPNTIRAISKALSERL 335

Length = 335
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
PLN02489335 homocysteine S-methyltransferase 100.0
PRK09485304 mmuM homocysteine methyltransferase; Provisional 100.0
KOG1579317 consensus Homocysteine S-methyltransferase [Amino 100.0
COG2040300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PRK07534336 methionine synthase I; Validated 100.0
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 96.91
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 96.16
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 95.44
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 95.29
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 95.29
TIGR00222263 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 95.16
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 95.12
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 95.1
PRK03620 303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 94.6
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 94.46
cd06556240 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup 94.4
PRK10415 321 tRNA-dihydrouridine synthase B; Provisional 94.27
cd02801231 DUS_like_FMN Dihydrouridine synthase-like (DUS-lik 94.2
PLN02424332 ketopantoate hydroxymethyltransferase 93.9
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 93.6
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 93.6
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 93.59
PRK09485304 mmuM homocysteine methyltransferase; Provisional 93.52
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 93.41
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 93.38
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 93.3
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 93.15
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 93.11
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 93.04
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 93.02
cd08205367 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l 93.0
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 92.99
PRK00311264 panB 3-methyl-2-oxobutanoate hydroxymethyltransfer 92.88
COG0329 299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 92.81
cd06557254 KPHMT-like Ketopantoate hydroxymethyltransferase ( 92.69
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 92.68
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 92.64
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 92.58
PF03437254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 92.4
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 92.3
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 92.16
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 92.13
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 92.08
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 92.03
PRK13397250 3-deoxy-7-phosphoheptulonate synthase; Provisional 91.88
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 91.67
cd00952 309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 91.48
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 91.39
PRK14042 596 pyruvate carboxylase subunit B; Provisional 91.03
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 90.98
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 90.91
PRK07565 334 dihydroorotate dehydrogenase 2; Reviewed 90.82
TIGR00742 318 yjbN tRNA dihydrouridine synthase A. Members of th 90.78
PRK10550 312 tRNA-dihydrouridine synthase C; Provisional 90.66
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 90.55
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 90.49
PRK04147293 N-acetylneuraminate lyase; Provisional 90.33
COG0826347 Collagenase and related proteases [Posttranslation 90.23
PRK15063428 isocitrate lyase; Provisional 90.21
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 90.08
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 89.93
TIGR00736231 nifR3_rel_arch TIM-barrel protein, putative. Membe 89.85
PRK05437 352 isopentenyl pyrophosphate isomerase; Provisional 89.68
PF00682237 HMGL-like: HMGL-like of this family is not conserv 89.58
cd02911233 arch_FMN Archeal FMN-binding domain. This family o 89.5
PRK03170292 dihydrodipicolinate synthase; Provisional 89.39
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 89.39
PRK08673335 3-deoxy-7-phosphoheptulonate synthase; Reviewed 89.3
TIGR02313294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 89.29
PRK05581220 ribulose-phosphate 3-epimerase; Validated 89.18
TIGR02319294 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos 89.01
PRK14040 593 oxaloacetate decarboxylase; Provisional 88.89
TIGR00612 346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 88.85
PRK12581 468 oxaloacetate decarboxylase; Provisional 88.76
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 88.67
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 88.51
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 88.29
PF02574305 S-methyl_trans: Homocysteine S-methyltransferase; 88.1
PRK00865261 glutamate racemase; Provisional 88.0
TIGR03217 333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 87.85
PRK07534 336 methionine synthase I; Validated 87.17
PLN02495385 oxidoreductase, acting on the CH-CH group of donor 87.0
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 86.96
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 86.94
PRK06852304 aldolase; Validated 86.89
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 86.86
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 86.78
PLN02417280 dihydrodipicolinate synthase 86.71
TIGR01306 321 GMP_reduct_2 guanosine monophosphate reductase, ba 86.65
COG0821 361 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat 86.6
PRK15063428 isocitrate lyase; Provisional 86.34
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 86.32
PRK02048 611 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 86.24
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 86.23
PRK12677384 xylose isomerase; Provisional 86.21
PF00682237 HMGL-like: HMGL-like of this family is not conserv 85.95
PLN02489335 homocysteine S-methyltransferase 85.74
COG0159265 TrpA Tryptophan synthase alpha chain [Amino acid t 85.65
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 85.59
PRK12331 448 oxaloacetate decarboxylase; Provisional 85.41
TIGR01769205 GGGP geranylgeranylglyceryl phosphate synthase. Th 85.31
PLN02925 733 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 85.13
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 85.12
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 84.76
PLN02591250 tryptophan synthase 84.73
TIGR02151 333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 84.71
PRK15452 443 putative protease; Provisional 84.7
TIGR02635378 RhaI_grampos L-rhamnose isomerase, Streptomyces su 84.64
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 84.57
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 84.43
PRK12858340 tagatose 1,6-diphosphate aldolase; Reviewed 84.41
PRK12330 499 oxaloacetate decarboxylase; Provisional 84.28
PRK08385278 nicotinate-nucleotide pyrophosphorylase; Provision 84.23
PRK13384322 delta-aminolevulinic acid dehydratase; Provisional 84.11
PRK00366 360 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s 84.1
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 84.04
PLN02274 505 inosine-5'-monophosphate dehydrogenase 83.99
cd08210364 RLP_RrRLP Ribulose bisphosphate carboxylase like p 83.71
PRK09250348 fructose-bisphosphate aldolase; Provisional 83.47
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 83.4
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 83.28
cd04739325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 83.21
PRK13587234 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 83.21
PRK00694 606 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 83.18
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 83.1
smart00633254 Glyco_10 Glycosyl hydrolase family 10. 83.08
cd08205367 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l 82.99
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 82.94
PF02515191 CoA_transf_3: CoA-transferase family III; InterPro 82.93
PRK00748233 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met 82.65
KOG2335 358 consensus tRNA-dihydrouridine synthase [Translatio 82.6
PLN02746347 hydroxymethylglutaryl-CoA lyase 82.51
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 82.48
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 82.33
PRK09140206 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R 82.23
PRK09282 592 pyruvate carboxylase subunit B; Validated 81.91
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 81.85
PRK14041 467 oxaloacetate decarboxylase; Provisional 81.64
PF04551 359 GcpE: GcpE protein; InterPro: IPR004588 This prote 81.49
PLN02617538 imidazole glycerol phosphate synthase hisHF 81.47
PF00490324 ALAD: Delta-aminolevulinic acid dehydratase; Inter 81.35
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 81.16
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 80.94
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 80.34
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.9e-84  Score=616.52  Aligned_cols=322  Identities=66%  Similarity=1.103  Sum_probs=293.4

Q ss_pred             cchHHHHHHHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHh
Q 020275            6 TTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLS   85 (328)
Q Consensus         6 ~~~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~   85 (328)
                      .|++.|+++|++.++++||||||||+|+++|++.+.|+||+.+|+++||+|+++|++|++||||||+|||||+|+.+|++
T Consensus         7 ~~~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~   86 (335)
T PLN02489          7 QMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFES   86 (335)
T ss_pred             hhhHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHH
Confidence            58899999998645699999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhc------cCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHH
Q 020275           86 RGLSIEEAESLLEKSVTLAVEARDKFWDAVK------KVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLK  159 (328)
Q Consensus        86 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~------~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~  159 (328)
                      +|++.++++++|++||++||+|++++..+..      ++....+++++|+|||||+|+++.+|+||+|+|++.+++++++
T Consensus        87 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~  166 (335)
T PLN02489         87 RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLK  166 (335)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHH
Confidence            9998788999999999999999988743210      0001123579999999999999999999999999778999999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEE
Q 020275          160 DFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVG  239 (328)
Q Consensus       160 ~~h~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG  239 (328)
                      ++|++|++.|+++|||+|+|||||++.|++++++++++.+.++|+||||+++++++|++|+++++++..+++..++++||
T Consensus       167 ~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iG  246 (335)
T PLN02489        167 DFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVG  246 (335)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEE
Confidence            99999999999999999999999999999999999998765799999999999999999999999999887655789999


Q ss_pred             ECCCChhhhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHH
Q 020275          240 INCAPPQFVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQA  319 (328)
Q Consensus       240 vNC~~p~~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~a  319 (328)
                      +||++|+.+.++++.++.....||++|||+|..|+...+.|......+|++|++++++|++.|++||||||||||+||++
T Consensus       247 iNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~a  326 (335)
T PLN02489        247 INCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRA  326 (335)
T ss_pred             ecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHH
Confidence            99999999999999999988899999999999999888889755446788999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 020275          320 VSKVLKER  327 (328)
Q Consensus       320 l~~~l~~~  327 (328)
                      |++.++.+
T Consensus       327 l~~~l~~~  334 (335)
T PLN02489        327 ISKALSER  334 (335)
T ss_pred             HHHHHhcC
Confidence            99998753

>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds Back     alignment and domain information
>PRK10415 tRNA-dihydrouridine synthase B; Provisional Back     alignment and domain information
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain Back     alignment and domain information
>PLN02424 ketopantoate hydroxymethyltransferase Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>TIGR00742 yjbN tRNA dihydrouridine synthase A Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>cd02911 arch_FMN Archeal FMN-binding domain Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>PRK00865 glutamate racemase; Provisional Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PLN02417 dihydrodipicolinate synthase Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK12677 xylose isomerase; Provisional Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase Back     alignment and domain information
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional Back     alignment and domain information
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R Back     alignment and domain information
>PRK09250 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional Back     alignment and domain information
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>smart00633 Glyco_10 Glycosyl hydrolase family 10 Back     alignment and domain information
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life Back     alignment and domain information
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated Back     alignment and domain information
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK14041 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>PLN02617 imidazole glycerol phosphate synthase hisHF Back     alignment and domain information
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway [] Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
1q7m_A 566 Cobalamin-Dependent Methionine Synthase (Meth) From 8e-13
1q85_A 566 Cobalamin-Dependent Methionine Synthase (1-566) Fro 3e-12
1umy_A407 Bhmt From Rat Liver Length = 407 4e-09
1lt7_A406 Oxidized Homo Sapiens Betaine-Homocysteine S-Methyl 2e-07
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From Thermotoga Maritima (Oxidized, Monoclinic) Length = 566 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 55/317 (17%)
Query: 23  VIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPG 82
           ++DG + T+   +G    D L   L  IK P +V +VH  Y+E+G+D+++T+++ AT   
Sbjct: 17  LLDGAYGTEFMKYGY---DDLPEELN-IKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72
Query: 83  FLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADG 142
               GL  ++ + ++  +V +A           ++  G      LV   IG  G      
Sbjct: 73  LRKHGLE-DKLDPIVRNAVRIA-----------RRAAGEK----LVFGDIGPTGEL---- 112
Query: 143 SEYSGNYGPGVDL-EKLKDFHRRRLQVLVESGPDLLAFETIPN--KXXXXXXXXXXXXXN 199
                 Y  G  L E+  +  R  ++++VE G D + FET  +  +             +
Sbjct: 113 -----PYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRD 167
Query: 200 IQIPSWICFS----SVDGENAPSGESFKECLDIINKSGKVNAVGINCA--PPQFVENLIC 253
           + + + + F     S+ G +  +     + LDI       +A+GINC+  P    E ++ 
Sbjct: 168 VFLIAHMTFDEKGRSLTGTDPANFAITFDELDI-------DALGINCSLGP----EEILP 216
Query: 254 YFKEL---TKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCC 310
            F+EL   T K +VV PN+G+      K   P   L    F      + + G  + GGCC
Sbjct: 217 IFQELSQYTDKFLVVEPNAGKPIVENGKTVYP---LKPHDFAVHIDSYYELGVNIFGGCC 273
Query: 311 RTTPSTIQAVSKVLKER 327
            TTP  ++   KVL  R
Sbjct: 274 GTTPEHVKLFRKVLGNR 290
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima (Cd2+ Complex, Se-Met) Length = 566 Back     alignment and structure
>pdb|1UMY|A Chain A, Bhmt From Rat Liver Length = 407 Back     alignment and structure
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-Methyltransferase In Complex With Four Sm(Iii) Ions Length = 406 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 1e-49
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 5e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
 Score =  169 bits (430), Expect = 1e-49
 Identities = 75/346 (21%), Positives = 135/346 (39%), Gaps = 49/346 (14%)

Query: 1   MGKENTTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVH 60
           +G +      L+ L   AG   + DGGF   LE  G     P W+    ++ P  V+++H
Sbjct: 4   VGGKKAKKGILERL--NAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLH 60

Query: 61  LEYLEAGADILVTSSYQATIPGFLSRGLSIEE---AESLLEKSVTLAVEARDKFWDAVKK 117
            E+L AG++++ T ++ A+     +RG  + E    + + E +  +A +  D+       
Sbjct: 61  REFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVADEG------ 114

Query: 118 VPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLL 177
                   ALVA  +    +YL+  SE            ++K    ++L+V ++   D L
Sbjct: 115 -------DALVAGGVSQTPSYLSAKSE-----------TEVKKVFLQQLEVFMKKNVDFL 156

Query: 178 AFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNA 237
             E   +  EA   VE L       P      ++  E    G    E    + K+G  + 
Sbjct: 157 IAEYFEHVEEAVWAVETLIASG--KPVAATM-AIGPEGDLHGVPPGEAAVRLVKAG-ASI 212

Query: 238 VGINCA-PPQFVENLICYFKELTKKA-----IVVYPNSGEVWDGRAKKWLPSKCLGDGK- 290
           +G+NC   P      +   KE  + A     ++  P +    D   + ++       G  
Sbjct: 213 IGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLE 272

Query: 291 --------FESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKERS 328
                    + +A    + G + IGGCC   P  I+A+++ L    
Sbjct: 273 PRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPER 318
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
1lt8_A406 Betaine-homocysteine methyltransferase; homocystei 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 96.04
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 95.48
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 95.13
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 95.08
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 95.04
2ehh_A 294 DHDPS, dihydrodipicolinate synthase; structural ge 95.03
2v9d_A 343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 94.91
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 94.88
1o5k_A 306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 94.84
3fkr_A 309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 94.79
3si9_A315 DHDPS, dihydrodipicolinate synthase; structural ge 94.66
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 94.54
3tak_A291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 94.51
2e6f_A314 Dihydroorotate dehydrogenase; chagas disease, pyri 94.4
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 94.37
3dz1_A 313 Dihydrodipicolinate synthase; lysine biosynthesis, 94.34
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 94.3
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 94.29
3flu_A297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 94.28
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 94.13
3m5v_A301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 94.01
2r8w_A 332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 93.94
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 93.88
3a5f_A291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 93.86
3qfe_A 318 Putative dihydrodipicolinate synthase family PROT; 93.78
3d0c_A 314 Dihydrodipicolinate synthase; lysine biosynthesis, 93.65
1z41_A338 YQJM, probable NADH-dependent flavin oxidoreductas 93.64
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 93.64
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 93.56
2rfg_A 297 Dihydrodipicolinate synthase; beta barrel, amino-a 93.53
4h3d_A258 3-dehydroquinate dehydratase; structural genomics, 93.53
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 93.45
3e96_A 316 Dihydrodipicolinate synthase; structural genomics, 93.4
1to3_A304 Putative aldolase YIHT; beta-alpha barrel, structu 93.35
3l21_A304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 93.35
1f6k_A293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 93.3
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 93.29
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 93.26
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 93.22
2wkj_A303 N-acetylneuraminate lyase; directed evolution, sia 93.22
3daq_A292 DHDPS, dihydrodipicolinate synthase; lysine biosyn 93.18
3eol_A433 Isocitrate lyase; seattle structural center for in 93.08
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 93.06
3eb2_A 300 Putative dihydrodipicolinate synthetase; lysine bi 93.05
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 92.88
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 92.81
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 92.65
2hmc_A 344 AGR_L_411P, dihydrodipicolinate synthase; alpha-be 92.2
2nuw_A288 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a 91.86
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 91.76
3noy_A 366 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 91.52
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 91.37
1w3i_A 293 EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m 91.36
3b0p_A 350 TRNA-dihydrouridine synthase; TIM barrel, oxidored 91.06
3h5d_A 311 DHDPS, dihydrodipicolinate synthase; lysine biosyn 90.83
1m3u_A264 3-methyl-2-oxobutanoate hydroxymethyltransferase; 90.81
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 90.76
1zco_A262 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin 90.43
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 90.12
2nx9_A 464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 90.12
3rmj_A370 2-isopropylmalate synthase; LEUA, truncation, neis 90.11
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 89.72
4dpp_A 360 DHDPS 2, dihydrodipicolinate synthase 2, chloropla 89.31
1aj0_A282 DHPS, dihydropteroate synthase; antibiotic, resist 88.88
3i4e_A439 Isocitrate lyase; structural genomics, seattle str 88.8
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 88.56
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 88.46
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 88.4
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 88.37
1rqb_A 539 Transcarboxylase 5S subunit; TIM-barrel, carbamyla 88.33
3khj_A361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 88.31
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 88.27
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 88.24
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 87.86
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 87.83
4g9p_A 406 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 87.69
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 87.63
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 87.55
4ef8_A 354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 87.33
4fo4_A 366 Inosine 5'-monophosphate dehydrogenase; structural 87.29
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 87.17
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 87.12
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 87.07
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 86.6
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 86.58
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 86.53
3eol_A433 Isocitrate lyase; seattle structural center for in 86.48
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 86.43
1thf_D253 HISF protein; thermophIle, TIM-barrel, histidine b 86.41
1m3u_A264 3-methyl-2-oxobutanoate hydroxymethyltransferase; 86.38
3ble_A337 Citramalate synthase from leptospira interrogans; 86.31
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 86.2
3o1n_A276 3-dehydroquinate dehydratase; structural genomics, 86.0
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 85.87
1f8m_A429 Isocitrate lyase, ICL; alpha-beta barrel, helix-sw 85.8
2yr1_A257 3-dehydroquinate dehydratase; amino acid biosynthe 85.09
2hjp_A290 Phosphonopyruvate hydrolase; phosporus-Ca cleavage 84.99
4avf_A490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 84.24
2w6r_A266 Imidazole glycerol phosphate synthase subunit HISF 84.02
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 83.76
1vs1_A276 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha 83.76
1o66_A275 3-methyl-2-oxobutanoate hydroxymethyltransferase; 83.7
3lg3_A435 Isocitrate lyase; conserved, CD, proteomics eviden 83.64
1ka9_F252 Imidazole glycerol phosphtate synthase; riken stru 83.42
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 83.21
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 83.2
1ps9_A 671 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel 83.05
3oix_A345 Putative dihydroorotate dehydrogenase; dihydrooro 83.01
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 82.84
1vr6_A350 Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 82.73
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 82.66
1tx2_A297 DHPS, dihydropteroate synthase; folate biosynthesi 82.39
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 82.26
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 82.2
3b8i_A287 PA4872 oxaloacetate decarboxylase; alpha/beta barr 81.87
1icp_A376 OPR1, 12-oxophytodienoate reductase 1; beta-alpha- 81.6
3tdn_A247 FLR symmetric alpha-beta TIM barrel; symmetric sup 81.48
1sfl_A238 3-dehydroquinate dehydratase; 3-dehydroquinase, en 81.41
1rqb_A 539 Transcarboxylase 5S subunit; TIM-barrel, carbamyla 81.3
2nx9_A 464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 81.18
3oix_A345 Putative dihydroorotate dehydrogenase; dihydrooro 80.4
1ujp_A271 Tryptophan synthase alpha chain; riken structural 80.25
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
Probab=100.00  E-value=7.3e-73  Score=547.85  Aligned_cols=290  Identities=22%  Similarity=0.341  Sum_probs=247.9

Q ss_pred             cchHHHHHHHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHh
Q 020275            6 TTASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLS   85 (328)
Q Consensus         6 ~~~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~   85 (328)
                      +|...|.++|++ ++++||||||||+|+++|++.. ++|++.+++++||.|++||++|++||||||+||||++|+.+|.+
T Consensus         8 ~~~~~l~~~L~~-~~ilIlDGgmGT~L~~~G~~~~-~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~   85 (406)
T 1lt8_A            8 KAKKGILERLNA-GEIVIGDGGFVFALEKRGYVKA-GPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLEN   85 (406)
T ss_dssp             ---CCHHHHHHT-TCCEECCCCHHHHHHHHTSSCT-TTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC---
T ss_pred             cchHHHHHHHhc-CCEEEEeCccchHHHHCCCCCC-cccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHh
Confidence            456679999973 3599999999999999998753 58999999999999999999999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHH
Q 020275           86 RGLSI---EEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFH  162 (328)
Q Consensus        86 ~g~~~---~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h  162 (328)
                      +|++.   +++++||++||+|||+|+++             .+++|||||||+|.++.           .+++++++++|
T Consensus        86 ~G~~~~~~~~~~eln~~Av~LAreAa~~-------------~~~~VAGsIGP~g~~l~-----------~~s~eel~~~~  141 (406)
T 1lt8_A           86 RGNYVLEKISGQEVNEAAADIARQVADE-------------GDALVAGGVSQTPSYLS-----------AKSETEVKKVF  141 (406)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTT-------------TTCEEEEEECCCHHHHT-----------TCHHHHHHHHH
T ss_pred             cCCccchhHHHHHHHHHHHHHHHHHHhc-------------CCCEEEEEcCCcccccC-----------CCCHHHHHHHH
Confidence            99742   45789999999999999864             25899999999998651           36899999999


Q ss_pred             HHHHHHHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECC
Q 020275          163 RRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINC  242 (328)
Q Consensus       163 ~~qi~~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC  242 (328)
                      ++|+++|+++|||+|++|||+++.|++++++++++.+  +|||+||++.++++ ++|+++++++..+.+ .++++|||||
T Consensus       142 ~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~--lPv~iS~T~~~~G~-l~G~~~~~~~~~l~~-~~~~avGvNC  217 (406)
T 1lt8_A          142 LQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG--KPVAATMAIGPEGD-LHGVPPGEAAVRLVK-AGASIIGVNC  217 (406)
T ss_dssp             HHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT--SCEEEEECCBTTBC-TTCCCHHHHHHHHHT-TTCSEEEEES
T ss_pred             HHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC--CcEEEEEEECCCCC-cCCCcHHHHHHHhhc-CCCCEEEecC
Confidence            9999999999999999999999999999999999864  99999999988888 899999999998876 4699999999


Q ss_pred             C-ChhhhHHHHHHHHhhc-----CCeEEEEeCCCCccCCccccccCCC----CCChh-----HHHHHHHHHHHcCCeEEe
Q 020275          243 A-PPQFVENLICYFKELT-----KKAIVVYPNSGEVWDGRAKKWLPSK----CLGDG-----KFESFATRWRDSGAKLIG  307 (328)
Q Consensus       243 ~-~p~~~~~~l~~l~~~~-----~~pl~~ypN~g~~~d~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~G~~iiG  307 (328)
                      + .|+.+.++++.+++..     +.|+++|||+|..|+...+.|....    ..+|+     +|++++++|.+.|++|||
T Consensus       218 ~~gP~~~~~~l~~l~~~~~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iIG  297 (406)
T 1lt8_A          218 HFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIG  297 (406)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEEC
T ss_pred             CCCHHHHHHHHHHHHHhhhhcCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            7 7999999999998764     6899999999988876556675311    13444     599999999999999999


Q ss_pred             ecCCCChHHHHHHHHHHh
Q 020275          308 GCCRTTPSTIQAVSKVLK  325 (328)
Q Consensus       308 GCCGt~P~hI~al~~~l~  325 (328)
                      |||||||+||++|+++++
T Consensus       298 GCCGTtPeHI~aia~~l~  315 (406)
T 1lt8_A          298 GCCGFEPYHIRAIAEELA  315 (406)
T ss_dssp             CCTTCCHHHHHHHHHHTH
T ss_pred             EecCCCHHHHHHHHHHHh
Confidence            999999999999999886
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Back     alignment and structure
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 Back     alignment and structure
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Back     alignment and structure
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Back     alignment and structure
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Back     alignment and structure
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* Back     alignment and structure
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Back     alignment and structure
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Back     alignment and structure
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Back     alignment and structure
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* Back     alignment and structure
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Back     alignment and structure
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d3bofa2300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 7e-41
d1lt7a_361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 2e-40
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  142 bits (359), Expect = 7e-41
 Identities = 71/306 (23%), Positives = 121/306 (39%), Gaps = 33/306 (10%)

Query: 23  VIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPG 82
           ++DG + T+   +G             IK P +V +VH  Y+E+G+D+++T+++ AT   
Sbjct: 17  LLDGAYGTEFMKYGY----DDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72

Query: 83  FLSRGLSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADG 142
               GL  +  + ++  +V +A  A  +                     IG  G      
Sbjct: 73  LRKHGLEDK-LDPIVRNAVRIARRAAGEKLVFG---------------DIGPTG------ 110

Query: 143 SEYSGNYGPGVDLEKLKDFHRRRLQVLVESGPDLLAFETIPNKLEAQALVELLEEENIQI 202
                        E+  +  R  ++++VE G D + FET  + LE +A V    E +  +
Sbjct: 111 --ELPYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDV 168

Query: 203 PSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCAPPQFVENLI-CYFKELTKK 261
              I   + D +      +      I      ++A+GINC+        I     + T K
Sbjct: 169 F-LIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQYTDK 227

Query: 262 AIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVS 321
            +VV PN+G+      K   P   L    F      + + G  + GGCC TTP  ++   
Sbjct: 228 FLVVEPNAGKPIVENGKTVYP---LKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFR 284

Query: 322 KVLKER 327
           KVL  R
Sbjct: 285 KVLGNR 290
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d3bofa2300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d1lt7a_361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d1lt7a_ 361 Betaine-homocysteine S-methyltransferase {Human (H 95.76
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 94.89
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 94.26
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 92.65
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 91.52
d1o66a_260 Ketopantoate hydroxymethyltransferase PanB {Neisse 90.83
d2a6na1292 Dihydrodipicolinate synthase {Escherichia coli [Ta 90.34
d1gqna_252 Type I 3-dehydroquinate dehydratase {Salmonella ty 89.72
d1m3ua_262 Ketopantoate hydroxymethyltransferase PanB {Escher 88.6
d1f74a_293 N-acetylneuraminate lyase {Haemophilus influenzae 88.03
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 87.91
d1w3ia_ 293 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus 87.71
d1igwa_416 Isocitrate lyase {Escherichia coli [TaxId: 562]} 87.57
d1j93a_343 Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic 85.36
d1hl2a_295 N-acetylneuraminate lyase {Escherichia coli [TaxId 85.26
d1m3ua_262 Ketopantoate hydroxymethyltransferase PanB {Escher 83.78
d1gg4a1135 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 83.43
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 81.12
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 80.87
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 80.45
d1o66a_260 Ketopantoate hydroxymethyltransferase PanB {Neisse 80.4
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.8e-69  Score=501.13  Aligned_cols=286  Identities=26%  Similarity=0.420  Sum_probs=254.4

Q ss_pred             hHHHHHHHhhcCCeEEEecchHHHHHHCCCCCCCccchhhhcCCChHHHHHHHHHHHHhccceeecCCcCCChhhHHhCC
Q 020275            8 ASSLDDLIEKAGGCAVIDGGFATQLETHGASINDPLWSALYLIKQPHLVKRVHLEYLEAGADILVTSSYQATIPGFLSRG   87 (328)
Q Consensus         8 ~~~~~~~l~~~~~~lvlDGg~gt~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~yl~AGAdiI~TnTy~as~~~l~~~g   87 (328)
                      +..|+++|++  +++||||||||+|+++|++    +|++.+++++||+|+++|++|++||||||+|||||+++.+|.++|
T Consensus         4 ~~~~~~~l~~--~i~ilDGg~GteL~~~G~~----~~~~~~~~~~Pe~V~~iH~~yi~AGAdiI~TnTy~a~~~~l~~~g   77 (300)
T d3bofa2           4 RREVSKLLSE--RVLLLDGAYGTEFMKYGYD----DLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKHG   77 (300)
T ss_dssp             HHHHHHHHHH--CCEECCCCSHHHHGGGTCC----SCGGGHHHHCHHHHHHHHHHHHTTTCSEEECSCTTCSHHHHGGGT
T ss_pred             HHHHHHHHcC--CeEEEECHHHHHHHHCCCC----CCChHHhhcCHHHHHHHHHHHHHhCCCEEeeCceeceeChhhcCC
Confidence            3459999984  6999999999999999974    588888899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCceEEEeecCCcccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020275           88 LSIEEAESLLEKSVTLAVEARDKFWDAVKKVPGHNYNRALVAASIGSYGAYLADGSEYSGNYGPGVDLEKLKDFHRRRLQ  167 (328)
Q Consensus        88 ~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~~~eY~g~y~~~~~~~e~~~~h~~qi~  167 (328)
                      ++ +++.++|++|+++|++|+.               +..|+||+||+|.+..      + +. ..+.++++++|++|++
T Consensus        78 ~~-~~~~~~~~~Av~la~~a~~---------------~~~~~g~i~~~g~~~~------~-~~-~~~~~~~~~~~~~~~~  133 (300)
T d3bofa2          78 LE-DKLDPIVRNAVRIARRAAG---------------EKLVFGDIGPTGELPY------P-LG-STLFEEFYENFRETVE  133 (300)
T ss_dssp             CG-GGHHHHHHHHHHHHHHHHT---------------TSEEEEEECCCSCCBT------T-TS-SBCHHHHHHHHHHHHH
T ss_pred             ch-HHHHHHHHHHHHHHHHHhh---------------hccccceEeccccccC------c-cc-cccHHHHHHHHHHHHH
Confidence            97 5799999999999999974               3579999999997642      2 22 3689999999999999


Q ss_pred             HHHhcCCCeEEEecCCCHHHHHHHHHHHHhcCCCccEEEEEEecCCCCCCCCCCHHHHHHHHHhcCCceEEEECCC-Chh
Q 020275          168 VLVESGPDLLAFETIPNKLEAQALVELLEEENIQIPSWICFSSVDGENAPSGESFKECLDIINKSGKVNAVGINCA-PPQ  246 (328)
Q Consensus       168 ~l~~~gvD~i~~ET~~~~~E~~a~~~~~~~~~~~~pv~is~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGvNC~-~p~  246 (328)
                      .|.++|||+|+|||||++.|++++++++++.+...|+++||++++++++.+|+++.+++..+.+ .+++++|+||+ .|.
T Consensus       134 ~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~~inc~~~~~  212 (300)
T d3bofa2         134 IMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDE-LDIDALGINCSLGPE  212 (300)
T ss_dssp             HHHHTTCSEEEEEEECCHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTCCCHHHHHHHHHT-SSCSEEEEESSSCHH
T ss_pred             HHHhcCcceeeeeeeecHHHHHHHHHhHHhhccccceEEEEEecCCCCcccccchhHHHhhhcc-cccchHhhccccccc
Confidence            9999999999999999999999999999998756778888888888999999999999988876 57999999997 588


Q ss_pred             hhHHHHHHHHhhcCCeEEEEeCCCCccCCccccccCCCCCChhHHHHHHHHHHHcCCeEEeecCCCChHHHHHHHHHHhc
Q 020275          247 FVENLICYFKELTKKAIVVYPNSGEVWDGRAKKWLPSKCLGDGKFESFATRWRDSGAKLIGGCCRTTPSTIQAVSKVLKE  326 (328)
Q Consensus       247 ~~~~~l~~l~~~~~~pl~~ypN~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGt~P~hI~al~~~l~~  326 (328)
                      .+..+++.+....+.|+++|||+|..+....+.|.+   .+|++|++++++|+++||+||||||||+|+||++|++.|+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~vypN~g~~~~~~~~~~~~---~~p~~f~~~~~~w~~~Ga~iIGGCCgt~P~hI~~l~~~l~~  289 (300)
T d3bofa2         213 EILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYP---LKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGN  289 (300)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECC---CCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHCS
T ss_pred             chhhhhhhhhccccccccccCCCCCCEeCCCcccCC---CCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999866554444433   47999999999999999999999999999999999999975


Q ss_pred             C
Q 020275          327 R  327 (328)
Q Consensus       327 ~  327 (328)
                      +
T Consensus       290 ~  290 (300)
T d3bofa2         290 R  290 (300)
T ss_dssp             C
T ss_pred             C
Confidence            4
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Back     information, alignment and structure
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure