Citrus Sinensis ID: 020280

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRDGEEEEEETHHQEEDDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHVSRVVV
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEccccccccccccccccccccccccHHHHcEEEcEEEEcccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEcEEEEEEEcccccEEEEEEcccEEEEEEEEEccccEEEEEEEEEccccccccEEEEEEcccccEEEEEEEEEEEccccccccccccEEEccccccccccEEEEEEEEEEEEEEEEHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccHccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccEEEcccHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccEEcccccHHHHHHccccccccccccccccccHHHHHHHHHHHccccEEEEEcccEEEEEEcccccEEEEEEEccccEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEccccEEEEEEccccHHHccccccccccEEEcHHHccccccEEEEEEEEEccccHHHHcEEEc
Coil and Loop (DISEMBL)
makfsvgrleegegpsgnskrqrraphrhpqtnlrdgeeeeeethhqeeddesvdnggngekadldlagpsrngpfsvtvtdpevfdcpicyesltapvfqcenghiacstccskimnkcpscctpigynrCRAIEKVLESVKVTcrnsnygckvtmsygkkhdhekicphvpcscpipdcnfvgsanHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVsciapsckgclfysifagpagstvRFQSFTKNIqnrvdnppstgfllvpiesfgssgdlkLELCIRRLDISLQHVSRVVV
Flexible Loop (DISEMBL)
makfsvgrleegegpsgnskrqrraphrhpqtnlrdgeeeEEEThhqeeddesvdnggNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVkvtcrnsnygCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRldislqhvsrvvv
Low Complexity Region (SEG)
MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRDGeeeeeethhqeeddeSVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHVSRVVV
Disordered region (IsUnstruct)
***************************************************************************FSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHV*****
Disordered Region (DISOPRED)
**********************************************************************************PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTV***************PPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHVSRVVV
Disordered Region (DISEMBL)
********************************************************GGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHVSRVVV
Disordered Region (DISPRO)
*******************************************************************************VTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHVSRVVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRDGEEEEEETHHQEEDDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIRRLDISLQHVSRVVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q84K34	349	E3 ubiquitin-protein liga	yes	no	0.951	0.893	0.384	1e-62
Q9C6H3	313	E3 ubiquitin-protein liga	no	no	0.768	0.805	0.409	4e-47
Q9FKD9	281	Putative E3 ubiquitin-pro	no	no	0.728	0.850	0.394	7e-47
Q9FKD7	286	E3 ubiquitin-protein liga	no	no	0.731	0.839	0.390	9e-45
Q9C6H2	303	E3 ubiquitin-protein liga	no	no	0.807	0.874	0.334	4e-40
Q9C9M0	329	E3 ubiquitin-protein liga	no	no	0.728	0.726	0.376	2e-38
Q9FKD5	276	Putative E3 ubiquitin-pro	no	no	0.722	0.858	0.334	6e-36
Q9FM14	314	E3 ubiquitin-protein liga	no	no	0.652	0.681	0.372	3e-35
Q9FKD6	263	E3 ubiquitin-protein liga	no	no	0.685	0.855	0.345	4e-32
Q7XA77	328	E3 ubiquitin-protein liga	no	no	0.753	0.753	0.344	5e-31

>sp|Q84K34|SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 191/341 (56%), Gaps = 29/341 (8%)

Query: 1   MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRD-----------GEEEEEETHHQEE 49
           MA+FSV   ++GEGPS N+  Q R   R P  +  +           GEE+E+ET +Q  
Sbjct: 1   MARFSVCGGDDGEGPS-NNNHQSRKRQRLPSIDENEEDAETSDAGSSGEEDEDETQNQGM 59

Query: 50  DDESVDNGGNGEKADLDLAGPSRN-GPF--------------SVTVTDPEVFDCPICYES 94
             ES D G   + +D ++    R  G F              SVT+ DP+V DCPIC E 
Sbjct: 60  RPESEDRGSTSDDSDREVVIEERRFGKFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCEP 119

Query: 95  LTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCK 154
           L  P+FQC+NGH+AC+ CC+K+ N+CPSC  PIGY RCRA+EKV+E+ +V+C N+ YGCK
Sbjct: 120 LKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCK 179

Query: 155 VTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVT 214
            + SYG +  HE++C   PCSCPI DC++ G    L  H  A+HK+  + F++N  + ++
Sbjct: 180 ESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTIS 239

Query: 215 LNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGC--LFYSIFAGPAGSTV 272
           L++  +  +LQEE DG + ++          +SVSCIAP   G   L   +      S +
Sbjct: 240 LDLNKKTTILQEENDGHVIVVQVFRALHAVYVSVSCIAPLTPGVGRLSCRLAKITVDSLL 299

Query: 273 RFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCI 313
           +     KNIQ   +  P  GF+L+P   F  + +L L++ I
Sbjct: 300 KQGFMVKNIQKVTNEHPEDGFMLIPSYLFSGNDNLNLQIWI 340

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9C6H3|SINL2_ARATH E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana GN=At1g66620 PE=2 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 148/271 (54%), Gaps = 19/271 (7%)

Query: 52  ESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACST 111
           ESV+NGG    A        R+G    T+ + ++ DCPIC  +LT+P+FQC+NGHIACS+
Sbjct: 20  ESVENGGGDAVA--------RSG----TLFELDLLDCPICCHALTSPIFQCDNGHIACSS 67

Query: 112 CCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPH 171
           CC+K+ NKCPSC  PIG  R R +E+V+E+V VTC N  +GC    SYGK+  HEK C  
Sbjct: 68  CCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHEKDCRF 127

Query: 172 VPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGV 231
             C CP P+CN+ G    LY HF   H ++             L +  + +VLQ  G G 
Sbjct: 128 ALCYCPAPNCNYSGVYKDLYSHFYVNHYDTWNQIGCGNFAGAWLRISEKILVLQ-YGQGP 186

Query: 232 LFILSSRSETLGHVISVSCIAPSCKGC---LFYSIFAGPAG--STVRFQSFTKN-IQNRV 285
           L  +    ET G  ++V+CIAP   G     F   +  P G  ST+ F+S   N IQ   
Sbjct: 187 LIAVQCFKETQGMYVTVNCIAPCAPGVGELSFELSYKMPMGGNSTMMFKSEEMNRIQKVS 246

Query: 286 DNPPSTGFLLVPIESFGSSGDLKLELCIRRL 316
              P   F+LVP    G    LK+E+CIR+L
Sbjct: 247 FQTPEKDFMLVPYYFLGDFSTLKMEICIRKL 277

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD9|SINL6_ARATH Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 143/246 (58%), Gaps = 7/246 (2%)

Query: 77  SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
           S  +TD ++ DCPICY++L  PVFQC NGH+ACS+CC K+ NKCP+C  P+G+ RCRA+E
Sbjct: 34  SAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAME 93

Query: 137 KVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196
           +VLESV V CR ++ GC  T+ YG++  HEKIC   PCSCP+  CN+ GS   LY+H+  
Sbjct: 94  RVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDL 153

Query: 197 KHKNSALHFLYNEV--VEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPS 254
            H   +  + +N V  +   + + ++ ++ +     +LF++    E  G  +SVSCIAPS
Sbjct: 154 THSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKKLLFVVQCFEEPCGVYVSVSCIAPS 213

Query: 255 CKGCLFYS---IFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLE 310
                 +S   ++    G T+ +QS   K +       P   F+L+P  S      L + 
Sbjct: 214 APEVGEFSYGLLYTTWEGVTMTYQSPKVKKVLKVSSQRPKDSFMLIP-HSLLCGPLLGMM 272

Query: 311 LCIRRL 316
           LCI  L
Sbjct: 273 LCINEL 278

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD7|SINL7_ARATH E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 139/246 (56%), Gaps = 6/246 (2%)

Query: 77  SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
           S  + D E+ DCPICYE+ T P+FQC+NGH+ACS+CC K+ NKCP+C +P+G+NRCRA+E
Sbjct: 40  STMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAME 99

Query: 137 KVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196
            VLES+ + C N+  GCK  +SYGK+  HEK C    C+CP  DCN+  S   LY H+  
Sbjct: 100 SVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNYTSSYKDLYTHYRI 159

Query: 197 KHK--NSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPS 254
            H   N    F+ +  + V +N+  + ++  E     LF +    E  G  ++VSCIAPS
Sbjct: 160 THMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAVQCFREPYGVYVTVSCIAPS 219

Query: 255 CKGCLFYSIFAGPA--GSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLEL 311
                 YS        G TV +QS   K +       P   F+L+P  S      L++ +
Sbjct: 220 SPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQENFMLIP-NSLLRGDVLEMRI 278

Query: 312 CIRRLD 317
            +++L+
Sbjct: 279 SVKKLN 284

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C6H2|SINL3_ARATH E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana GN=At1g66630 PE=2 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 25/290 (8%)

Query: 51  DESVDNGGNGEKADLDLAGPSRNG---PFSVTVTDPEVFDCPICYESLTAPVFQCENGHI 107
           + S+D         ++  G + +G     S T+ + ++ DCPICY  L AP++QC+NGHI
Sbjct: 9   ERSLDRPKRQRPVSMENVGGTASGSEVARSATLLELDLLDCPICYHKLGAPIYQCDNGHI 68

Query: 108 ACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHD--H 165
           ACS+CC K+  KCP C   IG+ R R +EK++E+V V+C N+ YGC   + Y  + +  H
Sbjct: 69  ACSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEKIPYDNESESAH 128

Query: 166 EKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNV---KNRFI 222
           E++C    C CP P+C + G    LY+H+ A+HK     F   E     L+V   K  F+
Sbjct: 129 ERVCEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSWFKCGEYNNAWLHVTGEKLSFL 188

Query: 223 VLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYS--IFAGPAGSTVRFQSFTKN 280
           VLQE  DG L ++    E+ G  ++V+CIAP   G   +S  +        + F+S   N
Sbjct: 189 VLQEYEDGPLVVVQCSMESHGICVTVNCIAPCAPGVGEFSCHLIYRNGSEKITFESKKMN 248

Query: 281 I------QNRVDNPP---------STGFLLVPIESFGSSGDLKLELCIRR 315
                  +N V N           ++ F+ +P      +  LK+++CIRR
Sbjct: 249 KIQKVSPENHVANYKPIPYYLRGEASNFMSIPYYLLDEASILKMQICIRR 298

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 141/252 (55%), Gaps = 13/252 (5%)

Query: 73  NGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRC 132
           + P SVT+ +  V +CP C++ L  P+FQC NGH+AC  CC K+  +C  C  PIG  RC
Sbjct: 71  SSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRC 130

Query: 133 RAIEKVLESVKVTCRNSNYGCKVTMSYGKK-HDHEKICPHVPCSCPIPDCNFVGSANHLY 191
           RA+EKV+++  V+C N+ YGCK + +YG +   HEK+C   PCSCPI DCN++G    L 
Sbjct: 131 RAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLI 190

Query: 192 KHFSAKHKNS---ALHFLYNE--VVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVI 246
            HF A HK S      F+++   +  + L+  ++ ++  EE  G LF++     + G   
Sbjct: 191 NHFRATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFVVQGFIGSHGVYA 250

Query: 247 SVSCIAPSCKGCLFY--SIFAGPAGSTVRFQSFTKNIQN--RVDNPPSTGFLLVPIESFG 302
           +VS IAP       +  S+      ST+R     KNIQ     +  P   FLL+P  S+ 
Sbjct: 251 TVSHIAPMVPEVRKFSCSLARLRPYSTLRLGLEVKNIQKLRSQEEQPQEDFLLIP--SYM 308

Query: 303 SSGD-LKLELCI 313
            +GD +K+E+ I
Sbjct: 309 VNGDHMKMEISI 320

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD5|SINL9_ARATH Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 132/251 (52%), Gaps = 14/251 (5%)

Query: 54  VDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCC 113
           +  G  GE+    +A   R+   ++ + D ++ DCPIC E+LT+P+FQC+NGH+AC +CC
Sbjct: 11  ISQGDGGER----VAKRQRS---AIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCC 63

Query: 114 SKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVP 173
            K+ NKCP+C  P+G++R RA+E VLES+ + C N  +GC  +  YGK+  HEK C    
Sbjct: 64  PKLSNKCPACTLPVGHSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQ 123

Query: 174 CSCPIPDCNFVGSANHLYKHFSAKHKNSAL----HFLYNEVVEVTLNVKNRFIVLQEEGD 229
           CSCP   C++ GS   LY H+   H  +       F        ++ + ++ ++ +    
Sbjct: 124 CSCPSSVCDYTGSYKDLYAHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEK 183

Query: 230 GVLFILSSRSETLGHVISVSCIAPSCK--GCLFYSIFAGPAGSTVRFQS-FTKNIQNRVD 286
            +L  +    E  G  ++VS IAPS    G   Y +     G TV ++S   K +     
Sbjct: 184 KLLLAVQCFREPCGVYVTVSFIAPSAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSI 243

Query: 287 NPPSTGFLLVP 297
             P   F+L+P
Sbjct: 244 ETPQENFMLIP 254

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FM14|SIL11_ARATH E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE=2 SV=2

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 123/236 (52%), Gaps = 22/236 (9%)

Query: 77  SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPS--CCTPIGYNRCRA 134
           S  + D +V DCP+C+E LT P FQC++GHI C+ C +K+ NKCP   C  PIG  RC A
Sbjct: 32  SAKLLDLDVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGNKRCFA 91

Query: 135 IEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHF 194
           +E+VLES  V C+N+ +GC  ++SY K   HEK C +  CSCP  +CN+ GS N +Y HF
Sbjct: 92  MERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCPNLECNYTGSYNIIYGHF 151

Query: 195 SAKHKNSALHFLYN----------EVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGH 244
             +H       LYN            V+V +N+K +  VL E    +LF++    E  G 
Sbjct: 152 MRRH-------LYNSTIVSSKWGYSTVDVLINIKEKVSVLWESRQKLLFVVQCFKERHGV 204

Query: 245 VISVSCIAPSCKGC--LFYSIFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVP 297
            ++V  IAP         Y +     G  V ++S   K +       P   F+ VP
Sbjct: 205 YVTVRRIAPPASEFKKFSYRLSYSIDGHNVTYESPEVKRLLEVNSQIPDDSFMFVP 260

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD6|SINL8_ARATH E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana GN=At5g37900 PE=1 SV=2

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 125/243 (51%), Gaps = 18/243 (7%)

Query: 77  SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
           S T+ D ++ DCPIC E LT P+FQCENGH+ACS+CC K+ NKCP+C           +E
Sbjct: 24  SATLLDLDILDCPICCEGLTCPIFQCENGHLACSSCCPKLRNKCPAC----------PME 73

Query: 137 KVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196
            +LES+ VTC N  +GC  +  YGKK  HE+ C    CSCP  DC + G    LY H+  
Sbjct: 74  NILESILVTCPNDMFGCTESFLYGKKSTHEEECIFSLCSCPSLDCEYSGRYEDLYDHYKL 133

Query: 197 KHKNSALH----FLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIA 252
            H +++      F  +   +  + + ++  + +     +LF +    E+ G  ++VSCIA
Sbjct: 134 THISNSYWTTNCFRSSIPYKAPMLISDKIQITRVYEKKILFAVQCFRESCGVYVTVSCIA 193

Query: 253 PSCK--GCLFYSIFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSS-GDLK 308
           PS    G   Y I       T+ ++S   K ++      P   F+L+P     S   D+K
Sbjct: 194 PSAPEVGQFSYQISYTVDEHTMVYRSPQMKRVRKVSFETPQENFMLIPHNLLRSELLDIK 253

Query: 309 LEL 311
           L +
Sbjct: 254 LSI 256

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XA77|SINL5_ARATH E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=2 SV=2

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 135/261 (51%), Gaps = 14/261 (5%)

Query: 63  ADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPS 122
            D     P  + P  +  +D  V DCP C E L  P++QC NGH+ACS+CC K+  KC  
Sbjct: 63  TDEQSGSPKSSQPVKLQSSD--VLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSF 120

Query: 123 CCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCN 182
           C   IG  RCRA+EKV+E+  V C N+ +GCK T +Y  +  HEK+C  V CSCP+ +CN
Sbjct: 121 CRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPVSNCN 180

Query: 183 FVGSANHLYKHF-SAKHKNSALHFLYNEVVE----VTLNV-KNRFIVLQEEGDGVLFILS 236
           +V S ++L  H  S  H        +  V++      +N+ + + +V +EE +G L ++ 
Sbjct: 181 YVSSYSNLKSHACSTAHVWGEDDIHFQLVIDRPRIFNMNLGRKKTVVFKEEKEGDLIVVQ 240

Query: 237 SRSETLGHVISVSCIAPSCKGC--LFYSIFAGPAGSTVRFQSFTKNIQN-RVDNPPSTGF 293
           +     G  ++V+ IA    G   L  S+      ST+R  S  K IQ  R         
Sbjct: 241 AFKGLEGVYVTVNRIAHMAPGIRDLSCSLAKLNEYSTLRSGSLVKKIQKVREKMHLEDDL 300

Query: 294 LLVPIESFGSSGD-LKLELCI 313
           + +P +    SGD  K+++CI
Sbjct: 301 MWIPPKML--SGDHWKMQICI 319

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
224135291	372	predicted protein [Populus trichocarpa]	0.762	0.672	0.577	7e-78
255583779	374	ubiquitin-protein ligase, putative [Rici	0.756	0.663	0.572	1e-76
225453102	355	PREDICTED: E3 ubiquitin-protein ligase S	0.817	0.754	0.516	1e-71
147816090	355	hypothetical protein VITISV_037121 [Viti	0.817	0.754	0.509	3e-69
356512131	320	PREDICTED: E3 ubiquitin-protein ligase S	0.951	0.975	0.445	3e-68
356524904	320	PREDICTED: E3 ubiquitin-protein ligase S	0.932	0.956	0.427	1e-67
255647862	320	unknown [Glycine max]	0.932	0.956	0.424	7e-67
388496832	281	unknown [Lotus japonicus]	0.829	0.967	0.464	1e-63
449526479	269	PREDICTED: E3 ubiquitin-protein ligase S	0.801	0.977	0.488	9e-63
358348167	327	E3 ubiquitin-protein ligase SINA-like pr	0.954	0.957	0.386	9e-62

>gi|224135291|ref|XP_002327611.1| predicted protein [Populus trichocarpa] gi|222836165|gb|EEE74586.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 145/251 (57%), Positives = 182/251 (72%), Gaps = 1/251 (0%)

Query: 67  LAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP 126
           L GPSRNG    T++DPEV DCPIC E LT PVFQC+NGH ACS+CC K+ +KCPSC  P
Sbjct: 105 LVGPSRNGVIYATLSDPEVLDCPICCEPLTIPVFQCDNGHTACSSCCIKLQHKCPSCTMP 164

Query: 127 IGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGS 186
           IGYNRCRAIEKVLES+KV+C NS+YGCK ++ Y KK++H+K C H PC+CP+P CN+ GS
Sbjct: 165 IGYNRCRAIEKVLESLKVSCSNSSYGCKESICYSKKYEHDKSCTHAPCTCPLPACNYQGS 224

Query: 187 ANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVI 246
           +  LY+H   KH      F +N    +   V ++F VLQEE + VLFIL++RSE LG+VI
Sbjct: 225 SKRLYQHCRIKHLCDLTSFQFNTSFPLFFMVDHKFRVLQEEKEDVLFILTNRSECLGNVI 284

Query: 247 SVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSG 305
           +VSC+ P S K   FY + A   GS VRFQS T+NIQ RVD+PPS GFLLVP +  G+ G
Sbjct: 285 TVSCMGPSSSKQGYFYELTAKAEGSNVRFQSSTRNIQTRVDHPPSLGFLLVPNDFLGTHG 344

Query: 306 DLKLELCIRRL 316
            + L++CI RL
Sbjct: 345 GITLDVCIWRL 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583779|ref|XP_002532642.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527633|gb|EEF29745.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/250 (57%), Positives = 178/250 (71%), Gaps = 2/250 (0%)

Query: 68  AGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPI 127
            G +RN    VT+TDPEV DCPICYE L+ PVFQCENGH ACS+CC K+ +KCPSC  PI
Sbjct: 102 VGTARNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPSCSLPI 161

Query: 128 GYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSA 187
           GYNRCRAIEKVLESVK+ C N  YGCK  +SY KK DH+KIC + PCSCP+  C+FVGS+
Sbjct: 162 GYNRCRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCSFVGSS 221

Query: 188 NHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVIS 247
             LY+HFS KHK SA  F YN    V   + ++ ++LQEE +GV+F L + +E LG+VI+
Sbjct: 222 RQLYQHFSIKHKGSAAPFRYNITFPVFFTLNDKSLILQEEKEGVVFFLKNTAEILGNVIT 281

Query: 248 VSCI-APSCKGCLFYSIFAGPAGSTVRFQSFTKNIQN-RVDNPPSTGFLLVPIESFGSSG 305
           V+C+  PS KG  FY + A   GS ++FQSFTKNIQ    D+P S  FL++P   FGS G
Sbjct: 282 VNCLGGPSSKGGYFYELAARMEGSNLKFQSFTKNIQKVNHDDPHSDTFLIIPGSFFGSYG 341

Query: 306 DLKLELCIRR 315
            + L+LCI R
Sbjct: 342 QISLDLCIWR 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453102|ref|XP_002271757.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Vitis vinifera]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 142/275 (51%), Positives = 184/275 (66%), Gaps = 7/275 (2%)

Query: 43  ETHHQEEDDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQC 102
           +  H +E  E+V + G G  +  +    +R+   SV +TDPEV DC IC E L+ PVFQC
Sbjct: 72  DDEHGQEIVEAVRDPGQGTSSGSE---ANRDASVSVILTDPEVLDCSICLEPLSVPVFQC 128

Query: 103 ENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKK 162
           ENGHIACS+CC+K+ N+CPSC  PIGYNRCRAIEKVLESVKV+C+N+ YGCK T+SYGKK
Sbjct: 129 ENGHIACSSCCTKLSNRCPSCSWPIGYNRCRAIEKVLESVKVSCQNTAYGCKETVSYGKK 188

Query: 163 HDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEV--VEVTLNVKNR 220
           HDHE  C +VPCSCP  +CNF GS+  L +HF +KH NS + F YN    V +  N  ++
Sbjct: 189 HDHEVTCNYVPCSCPHSNCNFRGSSKQLAQHFRSKHLNSVIRFQYNSFFPVHLEFNAVDK 248

Query: 221 FIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKN 280
           F +L E  +G LFI+SS  + LGH ++V  I P       +++ A     ++  QSFT+N
Sbjct: 249 FCIL-EAKEGALFIVSSSIQQLGHAVTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTEN 307

Query: 281 IQNRVDNPP-STGFLLVPIESFGSSGDLKLELCIR 314
           I+  V+ P  S GFLL+P    GSSG LKLELCIR
Sbjct: 308 IREVVELPSLSMGFLLIPNAFLGSSGQLKLELCIR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816090|emb|CAN77431.1| hypothetical protein VITISV_037121 [Vitis vinifera]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 140/275 (50%), Positives = 180/275 (65%), Gaps = 7/275 (2%)

Query: 43  ETHHQEEDDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQC 102
           +  H +E  E V + G G  +  +    +R+   SV +TDPEV DC IC E L+ PVFQC
Sbjct: 72  DDEHGQEIVEXVRDPGQGTSSGSE---ANRDASVSVILTDPEVLDCSICLEPLSVPVFQC 128

Query: 103 ENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKK 162
           ENGHIACS+CC+K+ N+CPSC  PIGYNRCRAIEKVLESVKV+C+N+ YGCK T+SY KK
Sbjct: 129 ENGHIACSSCCTKLSNRCPSCSWPIGYNRCRAIEKVLESVKVSCQNTAYGCKETVSYXKK 188

Query: 163 HDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEV--VEVTLNVKNR 220
            DHE  C +VPCSCP  +CNF GS+  L +HF +KH NS + F YN    V +  N  ++
Sbjct: 189 XDHEVTCNYVPCSCPHSNCNFRGSSKQLAQHFRSKHLNSVIRFQYNSFFPVHLEFNAVDK 248

Query: 221 FIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKN 280
           F +L E  +G LFI+SS  + LGH ++V  I P       +++ A     ++  QSFT+N
Sbjct: 249 FCIL-EAKEGALFIVSSSIQQLGHAVTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTEN 307

Query: 281 IQNRVDNPP-STGFLLVPIESFGSSGDLKLELCIR 314
           I+  V  P  S GFLL+P    GSSG LKLELCIR
Sbjct: 308 IREVVXLPSLSMGFLLIPNAFLGSSGQLKLELCIR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512131|ref|XP_003524774.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Glycine max]

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/319 (44%), Positives = 200/319 (62%), Gaps = 7/319 (2%)

Query: 1   MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRDG----EEEEEETHHQEEDDESVDN 56
           M K S+G  ++GEGPS  + ++RR      +   +      E  +     QE++D +   
Sbjct: 1   MVKISLGGYDDGEGPSNRTHKRRREEDDDDEEEEQQQQRSFEMVDPSIGTQEQEDHAAP- 59

Query: 57  GGNGEKADLDLAGPS-RNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSK 115
             +G  ++ + AG S R+    + V+DP+V DC ICYE L APVFQCENGHIACSTCC +
Sbjct: 60  PHDGSNSNANGAGTSSRDRSVPIFVSDPDVLDCCICYEPLAAPVFQCENGHIACSTCCVR 119

Query: 116 IMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCS 175
           + NKCP C  PIGYNRCRAIEKVLE +K++C N+NYGCK T SY +K++HEK C ++PCS
Sbjct: 120 LSNKCPMCLMPIGYNRCRAIEKVLECIKMSCPNANYGCKETFSYSRKNNHEKECIYLPCS 179

Query: 176 CPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFIL 235
           CP+  C+FV S+  L+ HFS +H      F Y++   V L++  R IVLQE+ DG LFI+
Sbjct: 180 CPLTGCDFVASSKELFLHFSHRHVGMGTRFAYDKFFTVFLSINQRTIVLQEKNDGNLFIV 239

Query: 236 SSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLL 295
            +  E LG+++ +SCI P       Y + A   G+ +  QSFTK +Q +  + PS+ FLL
Sbjct: 240 HNNHEHLGNIVRISCIGPKSMAEFQYEVLARHQGNALILQSFTKIVQGQYADAPSSTFLL 299

Query: 296 VPIESFGSSGDLKLELCIR 314
           +P   FGS   LKL++ I+
Sbjct: 300 IPSCLFGSP-QLKLDIRIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524904|ref|XP_003531068.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Glycine max]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/325 (42%), Positives = 196/325 (60%), Gaps = 19/325 (5%)

Query: 1   MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRDGE-----------EEEEETHHQEE 49
           M K S+G  ++GEGPS  + ++RR          +  +            +E E H    
Sbjct: 1   MVKISLGGYDDGEGPSNRTHKRRREDDDDDDEEEQQQQRSFEMVDPSIGTQENEDHAAPS 60

Query: 50  DDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIAC 109
           +D S  NG     +  D + P       + V+DP+V DC ICYE LT+PVFQCENGHIAC
Sbjct: 61  NDGSNSNGNGAGTSTRDRSVP-------IFVSDPDVLDCCICYEPLTSPVFQCENGHIAC 113

Query: 110 STCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKIC 169
           S CC ++ NKCP C  PIGYNRCRAIEKVLE +K++C N+NYGCK T+SY KK++HEK C
Sbjct: 114 SICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHEKEC 173

Query: 170 PHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGD 229
            ++PCSCP   C+F+ S+  L+ HFS +H  S   F Y++   V L++  R +VL+E+ D
Sbjct: 174 IYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSINQRTVVLKEKSD 233

Query: 230 GVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPP 289
           G LF++ +  E LG+++ +SCI P       Y + A   G+ +  QSFTK +Q +  + P
Sbjct: 234 GNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALILQSFTKIVQGQYTDAP 293

Query: 290 STGFLLVPIESFGSSGDLKLELCIR 314
           S+ FLL+P   FGS   LKL++ I+
Sbjct: 294 SSTFLLIPSCLFGSP-HLKLDIRIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647862|gb|ACU24390.1| unknown [Glycine max]

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 138/325 (42%), Positives = 195/325 (60%), Gaps = 19/325 (5%)

Query: 1   MAKFSVGRLEEGEGPSGNSKRQRRAPHRHPQTNLRDGE-----------EEEEETHHQEE 49
           M K S+G  ++GEGPS  + ++RR          +  +            +E E H    
Sbjct: 1   MVKISLGGYDDGEGPSNRTHKRRREDDDDDDEEEQQQQRSFEMVDPSIGTQENEDHAAPS 60

Query: 50  DDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIAC 109
           +D S  NG     +  D + P       + V+DP+V DC ICYE LT+PVFQCENGHIAC
Sbjct: 61  NDGSNSNGNGAGTSTRDRSVP-------IFVSDPDVLDCCICYEPLTSPVFQCENGHIAC 113

Query: 110 STCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKIC 169
           S CC ++ NKCP C  PIGYNRCRAIEKVLE +K++C N+NYGCK T+SY KK++HEK C
Sbjct: 114 SICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHEKEC 173

Query: 170 PHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGD 229
            ++PCSCP   C+F+ S+  L+ HFS +H  S   F Y++   V L++  R +VL+E+ D
Sbjct: 174 IYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSINQRTVVLKEKSD 233

Query: 230 GVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNPP 289
           G LF++ +  E LG+++ +SCI P       Y + A   G+ +  QSFTK +Q +  + P
Sbjct: 234 GNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALILQSFTKIVQGQYTDAP 293

Query: 290 STGFLLVPIESFGSSGDLKLELCIR 314
            + FLL+P   FGS   LKL++ I+
Sbjct: 294 FSTFLLIPSCLFGSP-HLKLDIRIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496832|gb|AFK36482.1| unknown [Lotus japonicus]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/282 (46%), Positives = 174/282 (61%), Gaps = 10/282 (3%)

Query: 38  EEEEEETHHQEEDDESVDNGGNGEKADLD-----LAGPSRNGPFSVTVTDPEVFDCPICY 92
           EE+ E    QE D    +N GNGE  D +      A   R     V +TDP+V DC ICY
Sbjct: 2   EEDPEIATTQEVDH---NNDGNGEAEDSNGVSGYSAARERERSVPVIITDPDVLDCCICY 58

Query: 93  ESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYG 152
           E L+ PVFQCENGH+ACS+CC+++ NKCP C  PIGYNRCRA+EK+LES+K++C N+ YG
Sbjct: 59  EPLSVPVFQCENGHVACSSCCARLRNKCPMCLMPIGYNRCRAMEKLLESIKISCLNAKYG 118

Query: 153 CKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVE 212
           CK   SY  K DH K C ++P  CP  DC+FV S+  L  H S +H  S + F Y++ + 
Sbjct: 119 CKEVFSYSMKSDHAKECVYIPILCPHTDCDFVASSKELSLHVSHRHVGSGVQFTYDKFIT 178

Query: 213 VTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTV 272
           V LN   + IVLQE+ D  LFI+ ++ E LG+ + +SCI P       Y I A   GST+
Sbjct: 179 VFLNTDQKEIVLQEQNDAHLFIVHNKLELLGNTVHISCIGPKSMAGFHYDILARSRGSTL 238

Query: 273 RFQSFTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLELCIR 314
             QS TK IQ  + +  S+ FLL+P + FG  G LKL++ I+
Sbjct: 239 ILQSVTKIIQ-AIGHASSSVFLLIPSKFFG-CGQLKLDIRIK 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526479|ref|XP_004170241.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Cucumis sativus]

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 130/266 (48%), Positives = 162/266 (60%), Gaps = 3/266 (1%)

Query: 49  EDDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIA 108
           ED  S D G     + +   G   NG  +V  TDP++ DC IC E L+ PVFQCENGHIA
Sbjct: 2   EDSRSSDGGSERRSSVISRRGT--NGTLNVIFTDPQILDCYICCEPLSIPVFQCENGHIA 59

Query: 109 CSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKI 168
           CS+CC+K  NKCPSC   IGY RCRAIEKVLES+K+ C+N+ YGCK  M     +DHE +
Sbjct: 60  CSSCCTKAQNKCPSCTLAIGYIRCRAIEKVLESIKLPCQNAIYGCKTVMGLNLINDHESL 119

Query: 169 CPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEG 228
           C + PCSCP+ +C FVGS   L  HF+ KHKNSA  F YN    + LN  +   +L+ E 
Sbjct: 120 CRYEPCSCPLDNCTFVGSTEQLGLHFTKKHKNSAKIFSYNTRFTICLNNGDTHRILKAEN 179

Query: 229 DGVLFILSSRSETLGHVISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDN 287
           DGVLF LS   E  G+ ++++ I P S +    Y I A   GS +  QS  K IQ  +  
Sbjct: 180 DGVLFFLSYTFEIFGNAVTMNRIGPLSSEKKFCYEIKAKTLGSVLSLQSIAKEIQGLIKV 239

Query: 288 PPSTGFLLVPIESFGSSGDLKLELCI 313
           PPS G LL+P E FGSS    LE+CI
Sbjct: 240 PPSKGSLLIPNEYFGSSTQTMLEICI 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348167|ref|XP_003638120.1| E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula] gi|355504055|gb|AES85258.1| E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula]

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 126/326 (38%), Positives = 187/326 (57%), Gaps = 13/326 (3%)

Query: 1   MAKFSVGRLEEGEGPSGNSKRQRR---------APHRHPQTNLRDGEEEEEETHHQEEDD 51
           M  FSVG  ++GEGPS  ++++RR         A     +    + ++ +E    +    
Sbjct: 1   MVTFSVGGCDDGEGPSNPNQKRRRVDAGEEVAAATTTREEEEEEENQQPQEGFEMENPPI 60

Query: 52  ESVDNGGNGEKADLDLAGPSRNG---PFSVTVTDPEVFDCPICYESLTAPVFQCENGHIA 108
           E+++N  N   +    AG   N      S  ++DP+V DC IC E L  P++QCENGHIA
Sbjct: 61  ETLENDANERNSVGSNAGQQNNDLSKKVSAIISDPDVLDCFICSEPLAVPIYQCENGHIA 120

Query: 109 CSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKI 168
           CS CC ++ NKCP C  PIGYNRCRA+EK+LES+K++C N+ YGCK   S   K  HEK 
Sbjct: 121 CSKCCGELRNKCPMCSMPIGYNRCRAVEKLLESIKISCPNAKYGCKDMFSCSMKSSHEKE 180

Query: 169 CPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEG 228
           C ++PC CP   C F+ S+  L  HFS +H    + F Y++ + V+LN + + IVL ++ 
Sbjct: 181 CIYIPCKCPHTGCGFLASSKELALHFSHRHAGFGIQFTYDKFISVSLNTRQKQIVLLDQN 240

Query: 229 DGVLFILSSRSETLGHVISVSCIAPSCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNP 288
           D  LFI+ +     G+++ +SC+ P       Y + A   GST+  QS TK IQ+   + 
Sbjct: 241 DARLFIVHNHIVQHGNMVHISCMGPKAITDTHYDVLARSQGSTLILQSSTKTIQDNNGDA 300

Query: 289 PSTGFLLVPIESFGSSGDLKLELCIR 314
           P+ GFL++P + FG  G LKL++ I+
Sbjct: 301 PTAGFLVIPSDHFG-FGQLKLDIRIK 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2153784	349	AT5G37930 [Arabidopsis thalian	0.774	0.727	0.414	5.3e-56
TAIR|locus:2153804	281	AT5G37870 [Arabidopsis thalian	0.728	0.850	0.398	2.3e-48
TAIR|locus:2195175	313	AT1G66620 [Arabidopsis thalian	0.765	0.801	0.407	9.8e-48
TAIR|locus:2153754	286	AT5G37890 [Arabidopsis thalian	0.728	0.835	0.392	4.2e-47
TAIR|locus:2195180	303	AT1G66630 [Arabidopsis thalian	0.551	0.597	0.419	1.6e-43
TAIR|locus:2153774	276	AT5G37910 [Arabidopsis thalian	0.707	0.840	0.347	1.5e-41
TAIR|locus:2033369	329	AT1G66650 [Arabidopsis thalian	0.728	0.726	0.380	4.6e-41
TAIR|locus:2195170	366	AT1G66610 [Arabidopsis thalian	0.506	0.453	0.345	1.7e-40
TAIR|locus:2033354	348	AT1G66660 [Arabidopsis thalian	0.75	0.706	0.353	4e-35
FB|FBgn0259794	351	sinah "sina homologue" [Drosop	0.704	0.658	0.287	1.4e-25

TAIR|locus:2153784 AT5G37930 [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 106/256 (41%), Positives = 157/256 (61%)

Query:    60 GEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNK 119
             G+  +   +  S++ P SVT+ DP+V DCPIC E L  P+FQC+NGH+AC+ CC+K+ N+
Sbjct:    85 GKFVNSQSSSSSKDSPLSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNR 144

Query:   120 CPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP 179
             CPSC  PIGY RCRA+EKV+E+ +V+C N+ YGCK + SYG +  HE++C   PCSCPI 
Sbjct:   145 CPSCTLPIGYVRCRAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPIL 204

Query:   180 DCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRS 239
             DC++ G    L  H  A+HK+  + F++N  + ++L++  +  +LQEE DG + ++    
Sbjct:   205 DCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFR 264

Query:   240 ETLGHVISVSCIAPSCKGCLFYSI-FAGPAGSTVRFQSF-TKNIQNRVDNPPSTGFLLVP 297
                   +SVSCIAP   G    S   A     ++  Q F  KNIQ   +  P  GF+L+P
Sbjct:   265 ALHAVYVSVSCIAPLTPGVGRLSCRLAKITVDSLLKQGFMVKNIQKVTNEHPEDGFMLIP 324

Query:   298 IESFGSSGDLKLELCI 313
                F  + +L L++ I
Sbjct:   325 SYLFSGNDNLNLQIWI 340

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153804 AT5G37870 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 98/246 (39%), Positives = 143/246 (58%)

Query:    77 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
             S  +TD ++ DCPICY++L  PVFQC NGH+ACS+CC K+ NKCP+C  P+G+ RCRA+E
Sbjct:    34 SAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAME 93

Query:   137 KVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196
             +VLESV V CR ++ GC  T+ YG++  HEKIC   PCSCP+  CN+ GS   LY+H+  
Sbjct:    94 RVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDL 153

Query:   197 KHKNSALHFLYNEV--VEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPS 254
              H   +  + +N V  +   + + ++ ++ +     +LF++    E  G  +SVSCIAPS
Sbjct:   154 THSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKKLLFVVQCFEEPCGVYVSVSCIAPS 213

Query:   255 CK--GCLFYSI-FAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKLE 310
                 G   Y + +    G T+ +QS   K +       P   F+L+P  S      L + 
Sbjct:   214 APEVGEFSYGLLYTTWEGVTMTYQSPKVKKVLKVSSQRPKDSFMLIP-HSLLCGPLLGMM 272

Query:   311 LCIRRL 316
             LCI  L
Sbjct:   273 LCINEL 278

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195175 AT1G66620 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 110/270 (40%), Positives = 151/270 (55%)

Query:    53 SVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTC 112
             SV+NGG G+         +R+G    T+ + ++ DCPIC  +LT+P+FQC+NGHIACS+C
Sbjct:    21 SVENGG-GDAV-------ARSG----TLFELDLLDCPICCHALTSPIFQCDNGHIACSSC 68

Query:   113 CSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHV 172
             C+K+ NKCPSC  PIG  R R +E+V+E+V VTC N  +GC    SYGK+  HEK C   
Sbjct:    69 CTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEKFSYGKELIHEKDCRFA 128

Query:   173 PCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVL 232
              C CP P+CN+ G    LY HF   H ++             L +  + +VLQ  G G L
Sbjct:   129 LCYCPAPNCNYSGVYKDLYSHFYVNHYDTWNQIGCGNFAGAWLRISEKILVLQY-GQGPL 187

Query:   233 FILSSRSETLGHVISVSCIAPSCKGC--LFYSI-FAGPAG--STVRFQSFTKN-IQNRVD 286
               +    ET G  ++V+CIAP   G   L + + +  P G  ST+ F+S   N IQ    
Sbjct:   188 IAVQCFKETQGMYVTVNCIAPCAPGVGELSFELSYKMPMGGNSTMMFKSEEMNRIQKVSF 247

Query:   287 NPPSTGFLLVPIESFGSSGDLKLELCIRRL 316
               P   F+LVP    G    LK+E+CIR+L
Sbjct:   248 QTPEKDFMLVPYYFLGDFSTLKMEICIRKL 277

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153754 AT5G37890 [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 97/247 (39%), Positives = 140/247 (56%)

Query:    77 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
             S  + D E+ DCPICYE+ T P+FQC+NGH+ACS+CC K+ NKCP+C +P+G+NRCRA+E
Sbjct:    40 STMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAME 99

Query:   137 KVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196
              VLES+ + C N+  GCK  +SYGK+  HEK C    C+CP  DCN+  S   LY H+  
Sbjct:   100 SVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNYTSSYKDLYTHYRI 159

Query:   197 KHK--NSALHFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIAPS 254
              H   N    F+ +  + V +N+  + ++  E     LF +    E  G  ++VSCIAPS
Sbjct:   160 THMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAVQCFREPYGVYVTVSCIAPS 219

Query:   255 CKGCLFYSIFAGPA--GSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGD-LKLE 310
                   YS        G TV +QS   K +       P   F+L+P       GD L++ 
Sbjct:   220 SPELSQYSYALSYTVDGHTVIYQSPEVKRVLKLSFQTPQENFMLIPNSLL--RGDVLEMR 277

Query:   311 LCIRRLD 317
             + +++L+
Sbjct:   278 ISVKKLN 284

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195180 AT1G66630 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 78/186 (41%), Positives = 112/186 (60%)

Query:    77 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
             S T+ + ++ DCPICY  L AP++QC+NGHIACS+CC K+  KCP C   IG+ R R +E
Sbjct:    38 SATLLELDLLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILE 97

Query:   137 KVLESVKVTCRNSNYGCKVTMSYGKKHD--HEKICPHVPCSCPIPDCNFVGSANHLYKHF 194
             K++E+V V+C N+ YGC   + Y  + +  HE++C    C CP P+C + G    LY+H+
Sbjct:    98 KIVEAVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCYCPEPECKYTGVYTDLYRHY 157

Query:   195 SAKHKNSALHFLYNEVVEVTLNV---KNRFIVLQEEGDGVLFILSSRSETLGHVISVSCI 251
              A+HK     F   E     L+V   K  F+VLQE  DG L ++    E+ G  ++V+CI
Sbjct:   158 HAEHKTDHSWFKCGEYNNAWLHVTGEKLSFLVLQEYEDGPLVVVQCSMESHGICVTVNCI 217

Query:   252 APSCKG 257
             AP   G
Sbjct:   218 APCAPG 223

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153774 AT5G37910 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 84/242 (34%), Positives = 129/242 (53%)

Query:    77 SVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIE 136
             ++ + D ++ DCPIC E+LT+P+FQC+NGH+AC +CC K+ NKCP+C  P+G++R RA+E
Sbjct:    27 AIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAME 86

Query:   137 KVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA 196
              VLES+ + C N  +GC  +  YGK+  HEK C    CSCP   C++ GS   LY H+  
Sbjct:    87 SVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLYAHYKL 146

Query:   197 KHKNSAL----HFLYNEVVEVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVISVSCIA 252
              H  +       F        ++ + ++ ++ +     +L  +    E  G  ++VS IA
Sbjct:   147 THSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEKKLLLAVQCFREPCGVYVTVSFIA 206

Query:   253 PSCK--GCLFYSIFAGPAGSTVRFQS-FTKNIQNRVDNPPSTGFLLVPIESFGSSGDLKL 309
             PS    G   Y +     G TV ++S   K +       P   F+L+P       GDL L
Sbjct:   207 PSAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSIETPQENFMLIPHSLL--RGDL-L 263

Query:   310 EL 311
             E+
Sbjct:   264 EM 265

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2033369 AT1G66650 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 96/252 (38%), Positives = 142/252 (56%)

Query:    73 NGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRC 132
             + P SVT+ +  V +CP C++ L  P+FQC NGH+AC  CC K+  +C  C  PIG  RC
Sbjct:    71 SSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRC 130

Query:   133 RAIEKVLESVKVTCRNSNYGCKVTMSYGKK-HDHEKICPHVPCSCPIPDCNFVGSANHLY 191
             RA+EKV+++  V+C N+ YGCK + +YG +   HEK+C   PCSCPI DCN++G    L 
Sbjct:   131 RAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLI 190

Query:   192 KHFSAKHKNSA--LH-FLYNEVV--EVTLNVKNRFIVLQEEGDGVLFILSSRSETLGHVI 246
              HF A HK S   ++ F+++  V   + L+  ++ ++  EE  G LF++     + G   
Sbjct:   191 NHFRATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFVVQGFIGSHGVYA 250

Query:   247 SVSCIAPSCKGCLFYSIFAGPAG--STVRFQSFTKNIQN--RVDNPPSTGFLLVPIESFG 302
             +VS IAP       +S         ST+R     KNIQ     +  P   FLL+P  S+ 
Sbjct:   251 TVSHIAPMVPEVRKFSCSLARLRPYSTLRLGLEVKNIQKLRSQEEQPQEDFLLIP--SYM 308

Query:   303 SSGD-LKLELCI 313
              +GD +K+E+ I
Sbjct:   309 VNGDHMKMEISI 320

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195170 AT1G66610 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 59/171 (34%), Positives = 83/171 (48%)

Query:   152 GCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEVV 211
             GC  T SYG +  HEK C    C CP P+CN+ G    LY H++A HK     F     +
Sbjct:   185 GCTETFSYGNELVHEKKCSFALCYCPAPNCNYAGVYKDLYSHYAANHKKLWTRFSCGYSM 244

Query:   212 EVTLNVKNRFIVLQEEGDGVLFILSSRSET-LGHVISVSCIAPSCKGC--LFYSIFAGPA 268
              V ++ +++ +VLQ+  DG L +L    E   G   +V+CIAPS  G     Y +    A
Sbjct:   245 HVCMDFESKSLVLQQYSDGPLVVLQCFKEPPQGLFWTVNCIAPSAPGVGKFSYELSYSTA 304

Query:   269 GSTVRFQSFTKN-IQNRVDNPPSTGFLLVPIESFGSSGDLK-LELCIRRLD 317
             G+T+ F+S   N IQ      P   F+ +P       G  K   +CIR L+
Sbjct:   305 GNTLTFRSSEMNRIQKVSFQTPEKDFMFIPEYILCPMGLYKGTYICIRSLE 355

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2033354 AT1G66660 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 92/260 (35%), Positives = 137/260 (52%)

Query:    64 DLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSC 123
             D     P  + P  +  +D  V DCP C E L  P++QC NGH+ACS+CC K+  KC  C
Sbjct:    84 DEQSGSPKSSQPVKLQSSD--VLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSFC 141

Query:   124 CTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNF 183
                IG  RCRA+EKV+E+  V C N+ +GCK T +Y  +  HEK+C  V CSCP+ +CN+
Sbjct:   142 RCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPVSNCNY 201

Query:   184 VGSANHLYKHF-SAKHK--NSALHF-LYNEVVEV-TLNV-KNRFIVLQEEGDGVLFILSS 237
             V S ++L  H  S  H      +HF L  +   +  +N+ + + +V +EE +G L ++ +
Sbjct:   202 VSSYSNLKSHACSTAHVWGEDDIHFQLVIDRPRIFNMNLGRKKTVVFKEEKEGDLIVVQA 261

Query:   238 RSETLGHVISVSCIAPSCKGC--LFYSIFAGPAGSTVRFQSFTKNIQN-RVDNPPSTGFL 294
                  G  ++V+ IA    G   L  S+      ST+R  S  K IQ  R         +
Sbjct:   262 FKGLEGVYVTVNRIAHMAPGIRDLSCSLAKLNEYSTLRSGSLVKKIQKVREKMHLEDDLM 321

Query:   295 LVPIESFGSSGD-LKLELCI 313
              +P +    SGD  K+++CI
Sbjct:   322 WIPPKML--SGDHWKMQICI 339

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

FB|FBgn0259794 sinah "sina homologue" [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 71/247 (28%), Positives = 123/247 (49%)

Query:    85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKV 144
             + +CP+C+  +  P+ QC  GH+ CSTC SK+   CP C   +   R  A+EKV   +  
Sbjct:   103 LLECPVCFGYIMPPIMQCPRGHLICSTCRSKL-TICPVCRVFMTNIRSLAMEKVASKLIF 161

Query:   145 TCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPD--CNFVGSANHLYKHFSAKHKNSA 202
              C++S++GC+  +SY +K  HE+ C   P  CP PD  C++ G    +Y+H  + H+N  
Sbjct:   162 PCKHSHFGCRARLSYAEKTKHEEDCECRPYFCPYPDDKCSWQGPLRDVYQHLMSSHEN-V 220

Query:   203 LHFLYNEVVEVTLNVKNRFIV---LQEEGDGVLFILSSRSETLGHVIS---VSC-IAPSC 255
             +    N+++ +  NV     +   + +   G  F+LS     LG        +C +  S 
Sbjct:   221 ITMEGNDIIFLATNVNLEGALDWTMVQSCHGRHFLLSLEKINLGEDCQQYFTACRMIGSM 280

Query:   256 KGC--LFYSIFAGPAGSTVRFQSFTKNIQNRVDNPPSTGFLLV---PIESFGSSGDLKLE 310
             K      Y+I       T+R+QS  ++I+    +  +  FL++    +E F   G+L L 
Sbjct:   281 KDAAEFVYNISLEAYNRTLRWQSKPRSIRENFSSFTNADFLVLNKHTVELFSEDGNLALN 340

Query:   311 LCIRRLD 317
             + IR+++
Sbjct:   341 VVIRKVE 347

GO:0005634 "nucleus" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0007423 "sensory organ development" evidence=ISS

GO:0045676 "regulation of R7 cell differentiation" evidence=ISS

GO:0016874 "ligase activity" evidence=ISS

GO:0010498 "proteasomal protein catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84K34	SIL10_ARATH	6, ., 3, ., 2, ., -	0.3841	0.9512	0.8939	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440259 hypothetical protein (372 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	6e-15
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-05

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score = 72.0 bits (177), Expect = 6e-15
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 131 RCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSAN 188
           R  A+EKV   V   C+++  GC V +    K  HE+ C + P  CP+P   C + G  +
Sbjct: 2   RNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDED 61

Query: 189 HLYKHFSAKHKN 200
            L  H +A HK 
Sbjct: 62  DLMPHLTADHKV 73

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 86  FDCPICYESLTAPVFQCENGHIACSTCCSKIM---NKCPSC 123
            +CPIC + L  PV     GH+ C  C  + +   +KCP C
Sbjct: 3   LECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPIC 43

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG3002	299	consensus Zn finger protein [General function pred	100.0
PF03145	198	Sina: Seven in absentia protein family; InterPro:	99.95
KOG0297	391	consensus TNF receptor-associated factor [Signal t	99.43
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	99.37
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.71
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.67
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.66
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.56
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.54
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.45
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.29
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.27
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.27
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.25
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.23
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.2
PF14634	44	zf-RING_5: zinc-RING finger domain	98.11
PHA02929	238	N1R/p28-like protein; Provisional	98.05
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	98.05
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.04
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.97
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.85
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	97.74
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.69
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.68
PHA02926	242	zinc finger-like protein; Provisional	97.6
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.51
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.42
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.35
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.31
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.08
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.69
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.62
COG5152	259	Uncharacterized conserved protein, contains RING a	96.6
PLN03086	567	PRLI-interacting factor K; Provisional	96.57
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.46
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.35
PLN03086	567	PRLI-interacting factor K; Provisional	96.35
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.14
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.11
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.06
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.87
KOG2660	331	consensus Locus-specific chromosome binding protei	95.79
KOG4739	233	consensus Uncharacterized protein involved in syna	95.68
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.53
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.35
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.17
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.89
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.83
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	94.46
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.21
KOG0825	1134	consensus PHD Zn-finger protein [General function	93.9
KOG3039	303	consensus Uncharacterized conserved protein [Funct	92.68
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	92.53
COG5219	1525	Uncharacterized conserved protein, contains RING Z	92.36
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	92.35
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	92.15
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	92.15
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	91.99
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	91.83
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.27
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	91.27
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	90.41
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	90.34
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.28
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	89.52
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.48
PF04641	260	Rtf2: Rtf2 RING-finger	88.35
KOG4367	699	consensus Predicted Zn-finger protein [Function un	87.83
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	86.59
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	85.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	85.13
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	85.12
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	83.75
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	83.42
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	82.78
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	81.02

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=304.42  Aligned_cols=240  Identities=40%  Similarity=0.784  Sum_probs=203.4

Q ss_pred             eeeCCCCeeeecccccccccccccccCCeeecccchhccCCCCCCCCcCCccccccccceeeeeeeeecccCCCCCceEE
Q 020280           78 VTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTM  157 (328)
Q Consensus        78 ~~~~d~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~~~  157 (328)
                      +.+.+.+.|.||||++.+.+|++||..||+.|++|..+..+.||.|+.+++.+|++++|++++++.|+|+|..+||++.+
T Consensus        41 ~~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~  120 (299)
T KOG3002|consen   41 VTLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSF  120 (299)
T ss_pred             ccccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceee
Confidence            45566889999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             eecccccccCCCCCCCccCCCC--CCCcccccchHhhHhhhhcCCCce-----eEEeceEEEEEEecC---CcEEEEEec
Q 020280          158 SYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSAKHKNSAL-----HFLYNEVVEVTLNVK---NRFIVLQEE  227 (328)
Q Consensus       158 ~~~~~~~He~~C~~~~~~Cp~~--gC~~~g~~~~L~~Hl~~~H~~~~~-----~~~y~~~~~~~l~~~---~~~~vl~~~  227 (328)
                      +|.+...||+.|.|+++.||.+  .|+|.|..++|..|+...|+..+.     .+.|.......+.+.   .++.++.+.
T Consensus       121 ~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (299)
T KOG3002|consen  121 PYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGR  200 (299)
T ss_pred             ccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcE
Confidence            9999999999999999999998  899999999999999999999877     444443333333333   244445566


Q ss_pred             cCceEEEEeecccccccEEEEEeecC--CCCCCceEEEEEecCCCeEEEeeeeeeeccccC-CCCCcCeEEEcCcccCCC
Q 020280          228 GDGVLFILSSRSETLGHVISVSCIAP--SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVD-NPPSTGFLLVPIESFGSS  304 (328)
Q Consensus       228 ~d~~lFll~~~~~~~g~~vsV~cIgp--~~a~~f~Yel~~~~~~~~l~~~s~~~~i~~~~~-~~~~~~fL~VP~~ll~~~  304 (328)
                      .++.+|.++...++.|.+++|++|.|  .++++|+|+|.+.+.+++|+|++.++++...+. ..+..+||+||..++...
T Consensus       201 ~~~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~  280 (299)
T KOG3002|consen  201 EFGLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLF  280 (299)
T ss_pred             EEeeeeeehhhcCCCceEEEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcc
Confidence            78889999999999999999999987  457899999999999999999999999865444 556778999999877553


Q ss_pred             CceEEEEEEEecc
Q 020280          305 GDLKLELCIRRLD  317 (328)
Q Consensus       305 ~~l~l~V~I~~~~  317 (328)
                      ..++++|+|....
T Consensus       281 ~~~~~~l~i~~~~  293 (299)
T KOG3002|consen  281 SLLKMELKIRVTG  293 (299)
T ss_pred             cccCCceeeccch
Confidence            3444455555444

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=99.95  E-value=2.8e-29  Score=223.84  Aligned_cols=183  Identities=30%  Similarity=0.556  Sum_probs=116.5

Q ss_pred             ccccccceeeeeeeeecccCCCCCceEEeecccccccCCCCCCCccCCC--CCCCcccccchHhhHhhhhcCCCceeEEe
Q 020280          130 NRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPI--PDCNFVGSANHLYKHFSAKHKNSALHFLY  207 (328)
Q Consensus       130 ~r~~~le~~l~~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~--~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y  207 (328)
                      +||++||+++++++++|+|+.+||++.++|.++.+||+.|+|+|+.||.  .+|+|.|+.++|..|+...|.+.+....+
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            4899999999999999999999999999999999999999999999999  78999999999999999999998765433


Q ss_pred             -ceEEEEEEec--CC-cEEEEEeccCceEEEEeecc-ccccc--EEE-EEeecC-CCCCCceEEEEEecCCCeEEEeeee
Q 020280          208 -NEVVEVTLNV--KN-RFIVLQEEGDGVLFILSSRS-ETLGH--VIS-VSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFT  278 (328)
Q Consensus       208 -~~~~~~~l~~--~~-~~~vl~~~~d~~lFll~~~~-~~~g~--~vs-V~cIgp-~~a~~f~Yel~~~~~~~~l~~~s~~  278 (328)
                       ...+......  .. .|.+++.+++|.+|+|++.. +..|.  +++ |++||+ .+|++|+|+|++.+++++|+|++++
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~~~~rkl~~~~~p  160 (198)
T PF03145_consen   81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVRSNGRKLTWQSFP  160 (198)
T ss_dssp             -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEEETTEEEEEEE--
T ss_pred             ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEecCCcEEEEEEcC
Confidence             1122111111  11 34433336899999999643 32344  443 556787 4689999999999999999999999


Q ss_pred             eeeccccCCC-CCcCeEEEcC---cccCCCCceEEEEE
Q 020280          279 KNIQNRVDNP-PSTGFLLVPI---ESFGSSGDLKLELC  312 (328)
Q Consensus       279 ~~i~~~~~~~-~~~~fL~VP~---~ll~~~~~l~l~V~  312 (328)
                      ++++...+.. .+.+||++..   .+|.++|.|.++|+
T Consensus       161 ~si~~~~~~~~~~~d~li~~~~~~~~f~~~~~L~~~v~  198 (198)
T PF03145_consen  161 RSIREDIDDAIESRDCLIINENAAQFFSEDGNLRYRVT  198 (198)
T ss_dssp             EETTT-SHHHHHCT-SEEEEHHHHHHHECTTEEEEEEE
T ss_pred             cchhhhHHhhccCCcEEEEchHHHHhcCCCCeEEEEeC
Confidence            9998766643 3446776654   58888889998885

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=99.43  E-value=3.8e-14  Score=138.52  Aligned_cols=123  Identities=27%  Similarity=0.543  Sum_probs=108.8

Q ss_pred             CCeeeeccccccccccccc-ccCCeeecccchhcc---CCCCCCCCcCCccc----cccccceeeeeeeeecccCCCCCc
Q 020280           83 PEVFDCPICYESLTAPVFQ-CENGHIACSTCCSKI---MNKCPSCCTPIGYN----RCRAIEKVLESVKVTCRNSNYGCK  154 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~-c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~~----r~~~le~~l~~l~v~C~n~~~GC~  154 (328)
                      .+++.|++|..++.+|+ + ..|||.||..|+.++   ...||.|+..+...    ....+.+++.++.+.|.+...||.
T Consensus        19 ~~~l~C~~C~~vl~~p~-~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC~   97 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPV-QTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGCR   97 (391)
T ss_pred             cccccCccccccccCCC-CCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCcc
Confidence            45689999999999999 6 589999999999998   36899998887643    245677888999999999999999


Q ss_pred             eEEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEece
Q 020280          155 VTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNE  209 (328)
Q Consensus       155 ~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~  209 (328)
                      |.+.+..++.|+..|  .+++||+. |+..+.+.++.+|++..|..+...+.+.+
T Consensus        98 ~~~~l~~~~~Hl~~c--~~~~C~~~-C~~~~~~~d~~~hl~~~C~~~~~~c~~~~  149 (391)
T KOG0297|consen   98 ADLELEALQGHLSTC--DPLKCPHR-CGVQVPRDDLEDHLEAECPRRSLKCSLCQ  149 (391)
T ss_pred             ccccHHHHHhHhccC--CcccCccc-cccccchHHHHHHHhcccccccccchhhc
Confidence            999999999999999  89999975 99999999999999999999888877653

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=99.37  E-value=3.1e-13  Score=108.69  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=79.9

Q ss_pred             cEEEEEeccCceEEEEeeccccccc-----EEEEEeecC-CCCCCceEEEEEecCCCeEEEeeeeeeeccccCC-CCCcC
Q 020280          220 RFIVLQEEGDGVLFILSSRSETLGH-----VISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDN-PPSTG  292 (328)
Q Consensus       220 ~~~vl~~~~d~~lFll~~~~~~~g~-----~vsV~cIgp-~~a~~f~Yel~~~~~~~~l~~~s~~~~i~~~~~~-~~~~~  292 (328)
                      .|++.+..+.|+.|+|+..+..++.     ++.|++||+ ++|.+|+|.|++.+++|+|+||+.|+||+++... ..+.|
T Consensus        22 ~~w~mv~sCfG~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~RkL~we~~PRSIrds~~~~~~~~D  101 (127)
T cd03829          22 TDWVMMQSCFGHHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNSD  101 (127)
T ss_pred             eeeeehhhhcCceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEcCCCcEEEeecCCccHHHhhHHHhhcCc
Confidence            4556666899999999998776522     367889996 6799999999999999999999999999988775 34568


Q ss_pred             eEEEcC---cccCCCCceEEEEEEE
Q 020280          293 FLLVPI---ESFGSSGDLKLELCIR  314 (328)
Q Consensus       293 fL~VP~---~ll~~~~~l~l~V~I~  314 (328)
                      ||+|-.   .||.++|.+.|+|+|+
T Consensus       102 ~Lii~~~~A~~Fs~~g~l~l~v~It  126 (127)
T cd03829         102 CLVFDTSIAQLFSENGNLGINVTIS  126 (127)
T ss_pred             ceEEechHhhhccCCCccEEEEEec
Confidence            999974   6888899999999996

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=5.6e-09  Score=93.22  Aligned_cols=46  Identities=33%  Similarity=0.754  Sum_probs=40.6

Q ss_pred             CCCeeeecccccccccccccccCCeeecccchhcc------CCCCCCCCcCCc
Q 020280           82 DPEVFDCPICYESLTAPVFQCENGHIACSTCCSKI------MNKCPSCCTPIG  128 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~------~~~CP~Cr~~~~  128 (328)
                      +-..|.|.||++..++|| .+.|||+||..|+.+|      .+.||+|+..++
T Consensus        44 ~~~~FdCNICLd~akdPV-vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPV-VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCCE-EeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            445799999999999999 5789999999999999      367999998765

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.71  E-value=4.4e-09  Score=70.27  Aligned_cols=35  Identities=37%  Similarity=1.029  Sum_probs=27.4

Q ss_pred             ecccccccccccccccCCeeecccchhccC-------CCCCCC
Q 020280           88 CPICYESLTAPVFQCENGHIACSTCCSKIM-------NKCPSC  123 (328)
Q Consensus        88 CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-------~~CP~C  123 (328)
                      ||||+++|++|| +..|||+||..|+.++.       ..||.|
T Consensus         1 CpiC~~~~~~Pv-~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPV-SLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEE-E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcc-ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999 78999999999999871       358876

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.5e-08  Score=86.93  Aligned_cols=46  Identities=37%  Similarity=0.906  Sum_probs=38.2

Q ss_pred             CCeeeeccccccccccc-ccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPV-FQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv-~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      ...+.||||+..+..-+ +.+.|||+||+.|+...   ..+||+|++.++
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            44689999999987544 36899999999999987   579999998665

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.66  E-value=9.7e-09  Score=90.05  Aligned_cols=45  Identities=36%  Similarity=0.783  Sum_probs=38.8

Q ss_pred             CeeeecccccccccccccccCCeeecccchhccC-------------------CCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKIM-------------------NKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-------------------~~CP~Cr~~~~~  129 (328)
                      +.+.|+||++.+++|+ .+.|||+||..|+.+|.                   ..||.|+..+..
T Consensus        17 ~~~~CpICld~~~dPV-vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         17 GDFDCNICLDQVRDPV-VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CccCCccCCCcCCCcE-EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            4678999999999999 58999999999998871                   379999998753

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.56  E-value=2.6e-08  Score=65.35  Aligned_cols=36  Identities=44%  Similarity=1.023  Sum_probs=30.4

Q ss_pred             ecccccccccccccccCCeeecccchhcc---CCCCCCC
Q 020280           88 CPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSC  123 (328)
Q Consensus        88 CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~C  123 (328)
                      |+||++.+.+|+...+|||+||..|+.++   ..+||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999657899999999999988   4688887

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.54  E-value=1.3e-08  Score=73.11  Aligned_cols=45  Identities=38%  Similarity=0.833  Sum_probs=25.3

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~  128 (328)
                      +.|.|++|.++|+.||....|.|+||+.|+... ...||+|+.+..
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw   51 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW   51 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence            357899999999999855679999999999875 467999998853

>smart00504 Ubox Modified RING finger domain

Probab=98.45  E-value=3.9e-08  Score=71.05  Aligned_cols=42  Identities=26%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             eeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      |.||||++++.+|+ ..+|||+||..|+.++   ...||.|+.++.
T Consensus         2 ~~Cpi~~~~~~~Pv-~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDPV-ILPSGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCCE-ECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            68999999999999 5799999999999988   468999999875

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.29  E-value=2.2e-07  Score=62.47  Aligned_cols=38  Identities=34%  Similarity=0.842  Sum_probs=31.7

Q ss_pred             eecccccccc--cccccccCCeeecccchhcc---CCCCCCCC
Q 020280           87 DCPICYESLT--APVFQCENGHIACSTCCSKI---MNKCPSCC  124 (328)
Q Consensus        87 ~CpiC~~~l~--~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr  124 (328)
                      .|+||++.+.  ..++..+|||.||..|+.+|   ...||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999985  45557889999999999999   57999996

...

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.27  E-value=1.2e-07  Score=92.24  Aligned_cols=45  Identities=29%  Similarity=0.620  Sum_probs=39.5

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+.+.|+||.+++..|+ ...|||.||..|+..+   ...||.|+..+.
T Consensus        24 e~~l~C~IC~d~~~~Pv-itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~   71 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPV-LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ   71 (397)
T ss_pred             ccccCCCcCchhhhCcc-CCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence            45689999999999999 6899999999999877   357999999875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.27  E-value=3.7e-08  Score=91.97  Aligned_cols=45  Identities=31%  Similarity=0.882  Sum_probs=40.1

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+.|.|.||+++|+.|+ .++|+|.||+-||.+.   .+.||.|..++.
T Consensus        21 D~lLRC~IC~eyf~ip~-itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPM-ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHHhHHHHHhcCce-eccccchHHHHHHHHHhccCCCCCceecccc
Confidence            45789999999999999 5789999999999987   478999998875

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3.2e-07  Score=84.44  Aligned_cols=46  Identities=26%  Similarity=0.608  Sum_probs=40.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .....|.+|++...+|- .++|||+||.+||..|   ...||.||..+..
T Consensus       237 ~a~~kC~LCLe~~~~pS-aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPS-ATPCGHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCceEEEecCCCCCC-cCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence            44679999999999997 6789999999999999   4689999998764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.23  E-value=4.2e-07  Score=62.89  Aligned_cols=43  Identities=37%  Similarity=0.898  Sum_probs=36.2

Q ss_pred             eeeecccccccccccccccCCee-ecccchhcc---CCCCCCCCcCCc
Q 020280           85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      +..|+||++...+++ ..+|||. ||..|+.++   ...||.||+++.
T Consensus         2 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVV-LLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEE-EETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceE-EeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            468999999999888 4699999 999999998   479999999865

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.20  E-value=7e-07  Score=58.95  Aligned_cols=36  Identities=44%  Similarity=0.980  Sum_probs=31.7

Q ss_pred             ecccccccccccccccCCeeecccchhcc-----CCCCCCC
Q 020280           88 CPICYESLTAPVFQCENGHIACSTCCSKI-----MNKCPSC  123 (328)
Q Consensus        88 CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-----~~~CP~C  123 (328)
                      |+||.+++..|++..+|||.||..|+.++     ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999999866789999999999987     2578877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.11  E-value=8.7e-07  Score=59.69  Aligned_cols=39  Identities=36%  Similarity=0.799  Sum_probs=31.9

Q ss_pred             eeccccccc--ccccccccCCeeecccchhccC---CCCCCCCc
Q 020280           87 DCPICYESL--TAPVFQCENGHIACSTCCSKIM---NKCPSCCT  125 (328)
Q Consensus        87 ~CpiC~~~l--~~Pv~~c~CGH~fC~~C~~~~~---~~CP~Cr~  125 (328)
                      .|++|++.+  ..+.+.++|||+||..|+.++.   ..||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            499999998  2333468999999999999884   58999974

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.05  E-value=1.6e-06  Score=79.19  Aligned_cols=47  Identities=28%  Similarity=0.624  Sum_probs=37.4

Q ss_pred             CCeeeecccccccccc-c------ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAP-V------FQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~P-v------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+...|+||++.+..+ +      ....|||.||..|+.+|   ...||.||.++..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            3457899999987653 1      24689999999999999   4689999998764

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=98.05  E-value=1.3e-06  Score=62.59  Aligned_cols=51  Identities=27%  Similarity=0.526  Sum_probs=35.8

Q ss_pred             eeeeecccCCCCCceEEeecccccccC-CCCCCCccCCC--CCCCcccccchHhhH
Q 020280          141 SVKVTCRNSNYGCKVTMSYGKKHDHEK-ICPHVPCSCPI--PDCNFVGSANHLYKH  193 (328)
Q Consensus       141 ~l~v~C~n~~~GC~~~~~~~~~~~He~-~C~~~~~~Cp~--~gC~~~g~~~~L~~H  193 (328)
                      ...|.|+|.  +|...+...++.+|++ .|+++++.|++  .||++.+.+.+|..|
T Consensus         7 ~~~v~C~~~--cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    7 FRPVPCPNG--CCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             TSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCEeeCCCC--CcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            456889874  6778899999999977 89999999998  589999999888877

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.04  E-value=6.5e-07  Score=67.07  Aligned_cols=57  Identities=26%  Similarity=0.427  Sum_probs=40.8

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCcc---ccccccceeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGY---NRCRAIEKVLE  140 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~---~r~~~le~~l~  140 (328)
                      ++.|.|||+++++.+|| ..++||+|+..++.+|.    ..||.++.++..   ..|..|.+.+.
T Consensus         2 P~~f~CpIt~~lM~dPV-i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~   65 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPV-ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIE   65 (73)
T ss_dssp             SGGGB-TTTSSB-SSEE-EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHH
T ss_pred             CcccCCcCcCcHhhCce-eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHH
Confidence            46799999999999999 67899999999999982    569999988764   35555555443

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.97  E-value=2.8e-06  Score=56.13  Aligned_cols=40  Identities=45%  Similarity=1.049  Sum_probs=33.1

Q ss_pred             eecccccccccccccccCCeeecccchhcc----CCCCCCCCcC
Q 020280           87 DCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTP  126 (328)
Q Consensus        87 ~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~  126 (328)
                      .|+||.+.+..++....|||.||..|+.++    ...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            499999999778755559999999999877    3579999875

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=7.1e-07  Score=84.10  Aligned_cols=83  Identities=23%  Similarity=0.295  Sum_probs=58.1

Q ss_pred             hhhhccccccccccccCCCCCCcCccccCCCCCCCCceeeeCCCCeeeecccccccccccccccCCeeecccchhcc---
Q 020280           40 EEEETHHQEEDDESVDNGGNGEKADLDLAGPSRNGPFSVTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---  116 (328)
Q Consensus        40 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---  116 (328)
                      +++|+++ .+..+.+.+|.+-.+++.+       ..+++.. -...+.||||+.+|+..+..-.|+|.||..||-+.   
T Consensus         7 a~~e~~E-l~l~~~er~p~~~~~d~~E-------i~~~l~~-~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~   77 (381)
T KOG0311|consen    7 AREEGRE-LELDSKERSPSSYNGDPSE-------IMVDLAM-FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS   77 (381)
T ss_pred             ccchhhh-cchhhhhcChhhhcCCchh-------heecHHH-hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence            3334443 6667777888876666553       2222211 13368999999999998844459999999999886   


Q ss_pred             -CCCCCCCCcCCcccc
Q 020280          117 -MNKCPSCCTPIGYNR  131 (328)
Q Consensus       117 -~~~CP~Cr~~~~~~r  131 (328)
                       .+.||.||+.+...|
T Consensus        78 gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   78 GNNECPTCRKKLVSKR   93 (381)
T ss_pred             cCCCCchHHhhccccc
Confidence             479999999887543

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.85  E-value=3e-06  Score=77.91  Aligned_cols=110  Identities=21%  Similarity=0.470  Sum_probs=71.0

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcccc---cccc-----------ceeeeeeeeecc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGYNR---CRAI-----------EKVLESVKVTCR  147 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~~r---~~~l-----------e~~l~~l~v~C~  147 (328)
                      .+.|-||...++.|+ .++|||.||+-||...   .+.||+|+.+....+   +..+           ..+..-|++.|+
T Consensus        25 ~lrC~IC~~~i~ip~-~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~l~~~L~~~~~  103 (391)
T COG5432          25 MLRCRICDCRISIPC-ETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDLLRKVLESLCR  103 (391)
T ss_pred             HHHhhhhhheeecce-ecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHHHHHHHhcccC
Confidence            578999999999999 6899999999999887   478999998864221   1011           112233456663


Q ss_pred             cC-----CCCCceEEeecccccc--cC--------CCC----------------CCCccCCCCCCCcccccchHhhHhhh
Q 020280          148 NS-----NYGCKVTMSYGKKHDH--EK--------ICP----------------HVPCSCPIPDCNFVGSANHLYKHFSA  196 (328)
Q Consensus       148 n~-----~~GC~~~~~~~~~~~H--e~--------~C~----------------~~~~~Cp~~gC~~~g~~~~L~~Hl~~  196 (328)
                      -.     ..-|.|......-.+-  ++        +=+                -..+.||  -|....+.+.|..||..
T Consensus       104 ~p~p~~ee~p~~~E~v~~~dS~S~~~~~eD~~~~~sS~~~iAKkt~~D~~KrK~E~l~~CP--~C~~~~P~~~i~~HLD~  181 (391)
T COG5432         104 LPRPIKEERPCRWETVIAQDSASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCP--ACSNLVPHNQINQHLDS  181 (391)
T ss_pred             CCCchhhcCCCchhheeccccccccchhhhhhhhccChHHHHhhhhhHHHHhHHHhhhcCc--hhhccCchHHHHHHHHH
Confidence            32     3356664333221100  00        000                2347898  59988999999999975


Q ss_pred             h
Q 020280          197 K  197 (328)
Q Consensus       197 ~  197 (328)
                      .
T Consensus       182 C  182 (391)
T COG5432         182 C  182 (391)
T ss_pred             H
Confidence            3

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=97.74  E-value=1.3e-05  Score=57.31  Aligned_cols=43  Identities=28%  Similarity=0.538  Sum_probs=35.6

Q ss_pred             ccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEe
Q 020280          165 HEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLY  207 (328)
Q Consensus       165 He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y  207 (328)
                      |++.|+++++.||+.+|.....+.+|..|+...|+++.+.+.|
T Consensus         1 H~~~C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~   43 (60)
T PF02176_consen    1 HEEECPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPY   43 (60)
T ss_dssp             HHTTSTTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS
T ss_pred             CcccCCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCC
Confidence            7888999999999877877799999999999999999999988

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=1.2e-05  Score=79.50  Aligned_cols=44  Identities=36%  Similarity=0.840  Sum_probs=37.2

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc--------CCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI--------MNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~--------~~~CP~Cr~~~~~  129 (328)
                      ...||||++...-|+ .+.|||+||..|+-..        ...||.|+..+..
T Consensus       186 ~~~CPICL~~~~~p~-~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPV-RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccc-ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            678999999988888 5789999999998764        2689999987764

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=1.1e-05  Score=73.55  Aligned_cols=45  Identities=24%  Similarity=0.561  Sum_probs=38.7

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhc-cC----CCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSK-IM----NKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~-~~----~~CP~Cr~~~~  128 (328)
                      ..++.|+||.+....|. .+.|||+||..|+.. |.    ..||.||....
T Consensus       213 ~~d~kC~lC~e~~~~ps-~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPS-CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcc-cccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            56889999999999998 678999999999988 62    46999998654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.68  E-value=1.1e-05  Score=53.97  Aligned_cols=27  Identities=41%  Similarity=1.052  Sum_probs=18.1

Q ss_pred             eccccccccc----ccccccCCeeecccchhcc
Q 020280           88 CPICYESLTA----PVFQCENGHIACSTCCSKI  116 (328)
Q Consensus        88 CpiC~~~l~~----Pv~~c~CGH~fC~~C~~~~  116 (328)
                      ||||++ +..    |+ ...|||+||..|+.++
T Consensus         1 CpIc~e-~~~~~n~P~-~L~CGH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPM-VLPCGHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EE-E-SSS-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCE-EEeCccHHHHHHHHHH
Confidence            899999 776    88 4679999999999988

>PHA02926 zinc finger-like protein; Provisional

Probab=97.60  E-value=1.6e-05  Score=71.02  Aligned_cols=46  Identities=30%  Similarity=0.623  Sum_probs=35.7

Q ss_pred             CCeeeeccccccccc---------ccccccCCeeecccchhccC---------CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTA---------PVFQCENGHIACSTCCSKIM---------NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~---------Pv~~c~CGH~fC~~C~~~~~---------~~CP~Cr~~~~~  129 (328)
                      ..+..|+||++....         ++ .-+|+|.||..|+.+|.         ..||.||..+..
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGI-L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGL-LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             cCCCCCccCccccccccccccccccc-cCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            345789999997643         23 34799999999999993         239999998764

>smart00184 RING Ring finger

Probab=97.51  E-value=3.1e-05  Score=49.20  Aligned_cols=35  Identities=49%  Similarity=1.070  Sum_probs=29.5

Q ss_pred             ecccccccccccccccCCeeecccchhcc----CCCCCCC
Q 020280           88 CPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSC  123 (328)
Q Consensus        88 CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~C  123 (328)
                      |+||++....++ ...|||.||..|+..|    ...||.|
T Consensus         1 C~iC~~~~~~~~-~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPV-VLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcE-EecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999988777 5789999999999877    2568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.42  E-value=6.5e-05  Score=70.75  Aligned_cols=45  Identities=27%  Similarity=0.682  Sum_probs=33.9

Q ss_pred             Ceeeeccccc--cccccc--ccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           84 EVFDCPICYE--SLTAPV--FQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~--~l~~Pv--~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      +...||+|..  ++.+-+  +.-.|||.||.+|+..+    ...||.|+.++.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence            3468999999  444432  22379999999999985    358999998765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=4.6e-05  Score=78.57  Aligned_cols=46  Identities=28%  Similarity=0.754  Sum_probs=40.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~  129 (328)
                      ...|.||+|..-+++-| ...|||.||..|+.+.    ..+||.|..+|+.
T Consensus       641 K~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             HhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            45789999998888888 5789999999999876    4799999999874

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=5.5e-05  Score=69.64  Aligned_cols=42  Identities=36%  Similarity=0.814  Sum_probs=37.1

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC---CCCCCCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM---NKCPSCCT  125 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~---~~CP~Cr~  125 (328)
                      .+.+.|+||++.|..|. .-+|||.||..|+..+.   ..||.|+.
T Consensus        11 ~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCc-cccccchHhHHHHHHhcCCCcCCcccCC
Confidence            46789999999999995 67899999999999874   68999993

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.08  E-value=0.00033  Score=52.40  Aligned_cols=38  Identities=39%  Similarity=0.783  Sum_probs=29.7

Q ss_pred             eecccccccccc------------cccccCCeeecccchhcc---CCCCCCCC
Q 020280           87 DCPICYESLTAP------------VFQCENGHIACSTCCSKI---MNKCPSCC  124 (328)
Q Consensus        87 ~CpiC~~~l~~P------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr  124 (328)
                      .|.||++.|.+|            +..-.|||.|...|+.+|   ...||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            499999999433            223369999999999998   46899996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.00043  Score=67.76  Aligned_cols=45  Identities=29%  Similarity=0.689  Sum_probs=39.8

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+.|.|.||...|.+|| .++|||.||..|+.+.   ...||.|+.++.
T Consensus        82 ~sef~c~vc~~~l~~pv-~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPV-VTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhcCCCc-cccccccccHHHHHHHhccCCCCcccccccc
Confidence            56899999999999999 6799999999998776   368999998875

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.00076  Score=62.60  Aligned_cols=42  Identities=33%  Similarity=0.677  Sum_probs=36.7

Q ss_pred             eeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      +.|-||...+..|| .+.|||.||..|..+-   ...|++|.+.+.
T Consensus       242 f~c~icr~~f~~pV-vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRPV-VTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccch-hhcCCceeehhhhccccccCCcceecccccc
Confidence            57999999999999 7899999999997765   368999998764

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.60  E-value=0.00048  Score=60.37  Aligned_cols=42  Identities=33%  Similarity=0.697  Sum_probs=35.9

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCC
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPI  127 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~  127 (328)
                      -|.|.||..-+..|| .+.|||.||+.|..+-   ...|-+|.+..
T Consensus       196 PF~C~iCKkdy~spv-vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESPV-VTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccchh-hhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            478999999999999 6899999999997654   46899998764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.57  E-value=0.00064  Score=69.22  Aligned_cols=50  Identities=28%  Similarity=0.497  Sum_probs=45.0

Q ss_pred             eeeecccCCCCCceEEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhh
Q 020280          142 VKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFS  195 (328)
Q Consensus       142 l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~  195 (328)
                      -.+.|+|    |.|.++..++..|+..|.|..+.||+.+|+....+.++..|+.
T Consensus       406 ~~V~C~N----C~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~  455 (567)
T PLN03086        406 DTVECRN----CKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVH  455 (567)
T ss_pred             CeEECCC----CCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCcc
Confidence            4678998    9999999999999999999999999777888888888888863

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.46  E-value=0.00089  Score=47.65  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=24.3

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI  116 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~  116 (328)
                      .+.|||.+.+|.+||....|||+|.+..+..+
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~   42 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQY   42 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS--EEEHHHHHHH
T ss_pred             ccCCCCcCChhhCCcCcCCCCCeecHHHHHHH
Confidence            57999999999999965679999999998877

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.35  E-value=0.0023  Score=54.42  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=24.9

Q ss_pred             CCccCCCCCCCcccccchHhhHhhhhcCC
Q 020280          172 VPCSCPIPDCNFVGSANHLYKHFSAKHKN  200 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~  200 (328)
                      .+-.|+..+|.|.|.+.+|..|.+.+|+.
T Consensus       106 K~RsC~~e~C~F~GtY~eLrKHar~~HP~  134 (162)
T PF07800_consen  106 KKRSCSQESCSFSGTYSELRKHARSEHPS  134 (162)
T ss_pred             CCccCcccccccccCHHHHHHHHHhhCCC
Confidence            34567777999999999999999999985

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.35  E-value=0.0014  Score=66.71  Aligned_cols=52  Identities=21%  Similarity=0.476  Sum_probs=24.7

Q ss_pred             CceEEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEec
Q 020280          153 CKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYN  208 (328)
Q Consensus       153 C~~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~  208 (328)
                      |...+...+++.|...| +.++.||   |+....+.+|..|+...|+.+...|.|+
T Consensus       459 Cgk~f~~s~LekH~~~~-Hkpv~Cp---Cg~~~~R~~L~~H~~thCp~Kpi~C~fC  510 (567)
T PLN03086        459 CGQAFQQGEMEKHMKVF-HEPLQCP---CGVVLEKEQMVQHQASTCPLRLITCRFC  510 (567)
T ss_pred             CCCccchHHHHHHHHhc-CCCccCC---CCCCcchhHHHhhhhccCCCCceeCCCC
Confidence            43333344444444444 3445554   4444445555555555555555555544

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.14  E-value=0.0023  Score=43.74  Aligned_cols=40  Identities=38%  Similarity=0.994  Sum_probs=20.6

Q ss_pred             eccccccccc---ccccccCCeeecccchhcc----CCCCCCCCcCC
Q 020280           88 CPICYESLTA---PVFQCENGHIACSTCCSKI----MNKCPSCCTPI  127 (328)
Q Consensus        88 CpiC~~~l~~---Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~  127 (328)
                      ||+|.+.+..   -++-|+||..+|..|+.++    ...||.||+++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7888887732   3456999999999998877    36899999875

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.0033  Score=57.86  Aligned_cols=45  Identities=31%  Similarity=0.648  Sum_probs=37.0

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc-----CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI-----MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-----~~~CP~Cr~~~~  128 (328)
                      +.-.||+|.+.-..|...-+|||++|-.|+.+.     ...||.|..+..
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            356899999999999844459999999999875     258999987653

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.06  E-value=0.0023  Score=49.02  Aligned_cols=41  Identities=27%  Similarity=0.496  Sum_probs=31.0

Q ss_pred             eccccccccc-ccccccCCeeecccchhcc------CCCCCCCCcCCc
Q 020280           88 CPICYESLTA-PVFQCENGHIACSTCCSKI------MNKCPSCCTPIG  128 (328)
Q Consensus        88 CpiC~~~l~~-Pv~~c~CGH~fC~~C~~~~------~~~CP~Cr~~~~  128 (328)
                      ||.|..+-.+ |+....|+|.|-..||.+|      +..||.||+++.
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            5555555433 5545689999999999998      268999998764

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.87  E-value=0.0026  Score=59.13  Aligned_cols=40  Identities=33%  Similarity=0.752  Sum_probs=34.6

Q ss_pred             eeecccccccccccccccCCeeecccchhcc----CCCCCCCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCT  125 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~  125 (328)
                      |.||.|..++++|+.+-.|||.||..|+...    ...||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            8999999999999944359999999999975    378999965

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.79  E-value=0.0017  Score=61.17  Aligned_cols=46  Identities=26%  Similarity=0.483  Sum_probs=39.5

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .....|.+|..+|.++-....|-|.||++||.+.   .+.||.|...+.
T Consensus        13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            4467899999999999866789999999999876   589999987764

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.68  E-value=0.0053  Score=55.72  Aligned_cols=44  Identities=25%  Similarity=0.625  Sum_probs=35.5

Q ss_pred             eeeecccccc-cccccccccCCeeecccchhccCC-CCCCCCcCCc
Q 020280           85 VFDCPICYES-LTAPVFQCENGHIACSTCCSKIMN-KCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~-l~~Pv~~c~CGH~fC~~C~~~~~~-~CP~Cr~~~~  128 (328)
                      -..|..|+.- -..|.|.+.|+|+||..|.....+ .||.|++++.
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceee
Confidence            3578888773 356778899999999999887755 9999999854

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=0.0056  Score=57.13  Aligned_cols=43  Identities=30%  Similarity=0.575  Sum_probs=35.6

Q ss_pred             eeecccccccc--cccccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           86 FDCPICYESLT--APVFQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~--~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      .+|.||++-+.  +-+...+|.|.|=..|+.+|    ..+||+|+.++.
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            68999999764  33446789999999999999    479999998764

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.35  E-value=0.0046  Score=58.43  Aligned_cols=47  Identities=32%  Similarity=0.858  Sum_probs=37.6

Q ss_pred             CCCCeeeecccccccc---cccccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           81 TDPEVFDCPICYESLT---APVFQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        81 ~d~~~l~CpiC~~~l~---~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      +|.+++ ||+|.+++.   .-.|-|+||-.+|..|+..+    ...||.||..+.
T Consensus        11 edeed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          11 EDEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            355566 999999875   24567999999999999877    479999997653

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=95.17  E-value=0.0056  Score=45.39  Aligned_cols=45  Identities=31%  Similarity=0.759  Sum_probs=20.8

Q ss_pred             eeeecccccccc----cccccc---cCCeeecccchhcc--------------CCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLT----APVFQC---ENGHIACSTCCSKI--------------MNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~----~Pv~~c---~CGH~fC~~C~~~~--------------~~~CP~Cr~~~~~  129 (328)
                      .+.|+||+..+.    .|...|   .|+..|=..|+.+|              ...||.|+.++..
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            468999999754    366677   49999999999998              1369999887653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.89  E-value=0.0076  Score=60.07  Aligned_cols=47  Identities=17%  Similarity=0.508  Sum_probs=40.4

Q ss_pred             CCCCeeeecccccccccccccccCCeeecccchhcc--------CCCCCCCCcCCc
Q 020280           81 TDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKI--------MNKCPSCCTPIG  128 (328)
Q Consensus        81 ~d~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~--------~~~CP~Cr~~~~  128 (328)
                      .+.....|.+|.++..+++ ...|.|.||+-|+...        ...||+|...+.
T Consensus       532 enk~~~~C~lc~d~aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cccCceeecccCChhhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            3466789999999999999 7899999999999665        358999988765

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.83  E-value=0.014  Score=48.23  Aligned_cols=52  Identities=27%  Similarity=0.645  Sum_probs=40.1

Q ss_pred             eeeeCCCCeeeecccccccccccccc---cCCeeecccchhcc------CCCCCCCCcCCcc
Q 020280           77 SVTVTDPEVFDCPICYESLTAPVFQC---ENGHIACSTCCSKI------MNKCPSCCTPIGY  129 (328)
Q Consensus        77 ~~~~~d~~~l~CpiC~~~l~~Pv~~c---~CGH~fC~~C~~~~------~~~CP~Cr~~~~~  129 (328)
                      +++++ +..++|.||.+...+..|--   .||-..|..|...+      -+.||+|+..+..
T Consensus        73 nvF~d-~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   73 NVFLD-PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             eeecC-CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            44454 48999999999887665432   39999999997765      3799999988764

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.011  Score=60.71  Aligned_cols=42  Identities=33%  Similarity=0.652  Sum_probs=35.7

Q ss_pred             eeeeccccccccc-----ccccccCCeeecccchhcc---CCCCCCCCcCC
Q 020280           85 VFDCPICYESLTA-----PVFQCENGHIACSTCCSKI---MNKCPSCCTPI  127 (328)
Q Consensus        85 ~l~CpiC~~~l~~-----Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~  127 (328)
                      ...|+||.+.+..     |- .-+|||+|+..|+.+|   ...||.||..+
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~-rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPK-RLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             CCeeeeechhhccccccccc-eeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            5689999999887     44 4689999999999999   57999999843

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.02  Score=53.52  Aligned_cols=42  Identities=31%  Similarity=0.625  Sum_probs=36.1

Q ss_pred             eeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      -+|+||+.-..-|+ .-.|+|.||.-|++..    ...|++||.++.
T Consensus         8 ~eC~IC~nt~n~Pv-~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    8 KECLICYNTGNCPV-NLYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             CcceeeeccCCcCc-cccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            47999999888887 6789999999999876    256999999975

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=93.90  E-value=0.017  Score=60.12  Aligned_cols=45  Identities=22%  Similarity=0.507  Sum_probs=35.7

Q ss_pred             Ceeeecccccccccccccc--cCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTAPVFQC--ENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c--~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      ..-.||+|..-+.+-....  .|+|.||..|+..|   ...||+|+..|.
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            3457999998877654333  59999999999999   378999998875

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.68  E-value=0.071  Score=48.58  Aligned_cols=45  Identities=24%  Similarity=0.597  Sum_probs=37.9

Q ss_pred             Ceeeecccccccccccccc----cCCeeecccchhccC---CCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTAPVFQC----ENGHIACSTCCSKIM---NKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c----~CGH~fC~~C~~~~~---~~CP~Cr~~~~~  129 (328)
                      ..|.||+|.+.|.+.+ .|    +|||+||..|.+++.   ..||+|..++..
T Consensus       220 ~ryiCpvtrd~LtNt~-~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTT-PCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCcc-ceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence            4689999999999865 44    699999999999983   579999888753

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.53  E-value=0.059  Score=51.89  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             eeeccccccccc--ccccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           86 FDCPICYESLTA--PVFQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      ..|.||++-+..  -+..-+|.|.|=..|+..|    ...||+|+..+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            489999998863  4445689999999999999    245999998754

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.36  E-value=0.031  Score=59.32  Aligned_cols=44  Identities=30%  Similarity=0.635  Sum_probs=36.4

Q ss_pred             eeeecccccccc-----ccccccc-CCeeecccchhcc-----CCCCCCCCcCCc
Q 020280           85 VFDCPICYESLT-----APVFQCE-NGHIACSTCCSKI-----MNKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~-----~Pv~~c~-CGH~fC~~C~~~~-----~~~CP~Cr~~~~  128 (328)
                      .-+|+||+.++.     -|-..|. |.|-|-.+|+.+|     ...||.||..++
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            357999999986     3655676 9999999999999     378999997764

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=92.35  E-value=0.067  Score=51.43  Aligned_cols=46  Identities=24%  Similarity=0.507  Sum_probs=35.9

Q ss_pred             CCeeeecccccc-ccccc-----------ccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYES-LTAPV-----------FQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~-l~~Pv-----------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .++-.|.||++- +.+|-           ..-+|||++=-.|+..|   +..||.||.++.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            345679999996 44441           13589999999999999   589999999953

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.15  E-value=0.021  Score=39.82  Aligned_cols=42  Identities=36%  Similarity=0.863  Sum_probs=32.6

Q ss_pred             eeecccccccccccccccCCee-ecccchhcc----CCCCCCCCcCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHI-ACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      -+|.||.+-..+-|+ =.|||. .|..|-.++    ...||.||.++.
T Consensus         8 dECTICye~pvdsVl-YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVL-YTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHH-HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            479999997766663 369996 899996654    468999998864

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.15  E-value=0.051  Score=52.02  Aligned_cols=43  Identities=33%  Similarity=0.720  Sum_probs=36.9

Q ss_pred             eeeecccccccccccccccCCee-ecccchhcc---CCCCCCCCcCCc
Q 020280           85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      --+|-||+.-.++-+ .-+|-|. .|+.|.+.+   .++||.||+++.
T Consensus       290 gkeCVIClse~rdt~-vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRDTV-VLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcceE-EecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            458999999988877 5799997 999998887   478999999875

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=91.99  E-value=0.13  Score=36.10  Aligned_cols=42  Identities=31%  Similarity=0.574  Sum_probs=31.7

Q ss_pred             eeecccccccccccccccCCeeecccchhccC-CCCCCCCcCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKIM-NKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-~~CP~Cr~~~~  128 (328)
                      ..|-.|...-...+ .-+|||++|..|+.-.. +-||.|..++.
T Consensus         8 ~~~~~~~~~~~~~~-~~pCgH~I~~~~f~~~rYngCPfC~~~~~   50 (55)
T PF14447_consen    8 QPCVFCGFVGTKGT-VLPCGHLICDNCFPGERYNGCPFCGTPFE   50 (55)
T ss_pred             eeEEEccccccccc-cccccceeeccccChhhccCCCCCCCccc
Confidence            45666777655555 46899999999987653 68999998875

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=91.83  E-value=0.044  Score=53.08  Aligned_cols=41  Identities=32%  Similarity=0.637  Sum_probs=33.7

Q ss_pred             eecccccccccccccccCCeeecccchhccC-----CCCCCCCcCCc
Q 020280           87 DCPICYESLTAPVFQCENGHIACSTCCSKIM-----NKCPSCCTPIG  128 (328)
Q Consensus        87 ~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-----~~CP~Cr~~~~  128 (328)
                      .|.||-+-=++ |..-+|||+.|..|+..|+     ..||.||..+.
T Consensus       371 LCKICaendKd-vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKD-VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCC-cccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            59999997665 4345799999999999993     68999998765

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.27  E-value=0.051  Score=50.64  Aligned_cols=41  Identities=37%  Similarity=0.834  Sum_probs=34.6

Q ss_pred             eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCC
Q 020280           85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPI  127 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~  127 (328)
                      ...|.||++...+-+| -+|||. -|..|-.++ +.||+||+.+
T Consensus       300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkrm-~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKRM-NECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEE-eecCcEEeehhhcccc-ccCchHHHHH
Confidence            4679999999888875 689995 799999888 5999999864

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.27  E-value=0.09  Score=50.74  Aligned_cols=48  Identities=27%  Similarity=0.650  Sum_probs=37.8

Q ss_pred             CCCeeeeccccccccccc-----cc--ccCCeeecccchhccC----------CCCCCCCcCCcc
Q 020280           82 DPEVFDCPICYESLTAPV-----FQ--CENGHIACSTCCSKIM----------NKCPSCCTPIGY  129 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~Pv-----~~--c~CGH~fC~~C~~~~~----------~~CP~Cr~~~~~  129 (328)
                      ......|.||++....+.     +.  -.|-|.||..|+.+|.          +.||.||.....
T Consensus       158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            345678999999887665     32  2599999999999993          689999987653

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=90.41  E-value=0.18  Score=34.96  Aligned_cols=37  Identities=24%  Similarity=0.673  Sum_probs=20.5

Q ss_pred             ecccccccccc--------ccccc-CCeeecccchhcc---CCCCCCCC
Q 020280           88 CPICYESLTAP--------VFQCE-NGHIACSTCCSKI---MNKCPSCC  124 (328)
Q Consensus        88 CpiC~~~l~~P--------v~~c~-CGH~fC~~C~~~~---~~~CP~Cr  124 (328)
                      |--|...|..+        +|+|+ |++.||..|=.=+   ...||-|.
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~   50 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE   50 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence            56677777653        57887 9999999993322   37899884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.084  Score=50.42  Aligned_cols=49  Identities=31%  Similarity=0.640  Sum_probs=38.4

Q ss_pred             eeeCCCCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCC
Q 020280           78 VTVTDPEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPI  127 (328)
Q Consensus        78 ~~~~d~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~  127 (328)
                      ..+.|.++-.||||+---...|| .+|+|.-|+.||.+.   .+.|-.|+..+
T Consensus       415 ~~lp~sEd~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlmN~k~CFfCktTv  466 (489)
T KOG4692|consen  415 KDLPDSEDNLCPICYAGPINAVF-APCSHRSCYGCITQHLMNCKRCFFCKTTV  466 (489)
T ss_pred             CCCCCcccccCcceecccchhhc-cCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence            34556677789999987777785 699999999999987   36777787654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.28  E-value=0.055  Score=51.53  Aligned_cols=112  Identities=23%  Similarity=0.444  Sum_probs=62.5

Q ss_pred             CCCeeeecccccccccccccccCCeeecccchhcc-----CCCCCCCCcCCcccc-ccccceeeeeeeeec-ccCCCCCc
Q 020280           82 DPEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-----MNKCPSCCTPIGYNR-CRAIEKVLESVKVTC-RNSNYGCK  154 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-----~~~CP~Cr~~~~~~r-~~~le~~l~~l~v~C-~n~~~GC~  154 (328)
                      |.+...|.||-.-+.--- ..+|+|..|..|.-++     .+.||.|+....... -...+.-|......| .+.++|  
T Consensus        58 DEen~~C~ICA~~~TYs~-~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI~D~~~~k~~~EK~G--  134 (493)
T COG5236          58 DEENMNCQICAGSTTYSA-RYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADITDRRQWKGREEKVG--  134 (493)
T ss_pred             ccccceeEEecCCceEEE-eccCCchHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcchhHhhhccccccee--
Confidence            466778999999766432 3589999999998776     478999998743210 000011111111111 222222  


Q ss_pred             eEEeecccccccCCCCCCCccCCCCC----CCcccccchHhhHhhhhcCCC
Q 020280          155 VTMSYGKKHDHEKICPHVPCSCPIPD----CNFVGSANHLYKHFSAKHKNS  201 (328)
Q Consensus       155 ~~~~~~~~~~He~~C~~~~~~Cp~~g----C~~~g~~~~L~~Hl~~~H~~~  201 (328)
                        +.|..-..-+++=..-...||...    |++   .++|..|++..|..-
T Consensus       135 --I~y~~E~v~~E~~~LL~F~CP~skc~~~C~~---~k~lk~H~K~~H~~~  180 (493)
T COG5236         135 --IFYEGEDVRDEMEDLLSFKCPKSKCHRRCGS---LKELKKHYKAQHGFV  180 (493)
T ss_pred             --eeecchHHHHHHHHHHHhcCCchhhhhhhhh---HHHHHHHHHhhcCcE
Confidence              333332222222223335666543    543   579999999998753

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.52  E-value=0.077  Score=48.95  Aligned_cols=46  Identities=15%  Similarity=0.439  Sum_probs=36.1

Q ss_pred             Ceeeeccccccccc---------ccccccCCeeecccchhcc-----CCCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTA---------PVFQCENGHIACSTCCSKI-----MNKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~---------Pv~~c~CGH~fC~~C~~~~-----~~~CP~Cr~~~~~  129 (328)
                      ++-.|.+|..-+..         ..++-+|+|+|=..||.-|     .+.||.|++.+..
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            34569999986643         3467789999999999988     4789999987653

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.48  E-value=0.15  Score=50.22  Aligned_cols=43  Identities=26%  Similarity=0.576  Sum_probs=35.3

Q ss_pred             Ceeeeccccccccccc---ccccCCeeecccchhccC-CCCCCCCcC
Q 020280           84 EVFDCPICYESLTAPV---FQCENGHIACSTCCSKIM-NKCPSCCTP  126 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv---~~c~CGH~fC~~C~~~~~-~~CP~Cr~~  126 (328)
                      +.-.||+|++-+-+-+   ....|.|.|=..|+.+|. ..||+||--
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~  220 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYC  220 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhh
Confidence            3558999999887654   566799999999999994 689999754

>PF04641 Rtf2: Rtf2 RING-finger

Probab=88.35  E-value=0.35  Score=44.97  Aligned_cols=46  Identities=22%  Similarity=0.494  Sum_probs=37.7

Q ss_pred             CCeeeeccccccccc---ccccccCCeeecccchhccC--CCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTA---PVFQCENGHIACSTCCSKIM--NKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~---Pv~~c~CGH~fC~~C~~~~~--~~CP~Cr~~~~  128 (328)
                      ...|.|||....|..   =|+.-+|||+|+..++..+.  ..||.|..++.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence            567999999999853   23445799999999999984  47999999886

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=87.83  E-value=0.14  Score=50.30  Aligned_cols=32  Identities=28%  Similarity=0.702  Sum_probs=28.4

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI  116 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~  116 (328)
                      +.|.||||...+++|| .-+|+|..|..|...+
T Consensus         3 eelkc~vc~~f~~epi-il~c~h~lc~~ca~~~   34 (699)
T KOG4367|consen    3 EELKCPVCGSFYREPI-ILPCSHNLCQACARNI   34 (699)
T ss_pred             ccccCceehhhccCce-EeecccHHHHHHHHhh
Confidence            5789999999999999 5799999999997654

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=86.59  E-value=0.12  Score=48.48  Aligned_cols=78  Identities=22%  Similarity=0.373  Sum_probs=48.9

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCccccccccceeeeeeeeecccCCCCCce-EEeec
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKV-TMSYG  160 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~-~~~~~  160 (328)
                      +..-.|--|..++..==..-+|.|+||..|...- .+.||.|..++.     .+|.....-.+-|. ...||.- .+.-.
T Consensus        88 p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vq-----rIeq~~~g~iFmC~-~~~GC~RTyLsqr  161 (389)
T KOG2932|consen   88 PRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQ-----RIEQIMMGGIFMCA-APHGCLRTYLSQR  161 (389)
T ss_pred             cceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHH-----HHHHhcccceEEee-cchhHHHHHhhHH
Confidence            3355688898876643224589999999996543 368999977653     23444444456676 3467754 33444


Q ss_pred             cccccc
Q 020280          161 KKHDHE  166 (328)
Q Consensus       161 ~~~~He  166 (328)
                      +++.|.
T Consensus       162 DlqAHI  167 (389)
T KOG2932|consen  162 DLQAHI  167 (389)
T ss_pred             HHHHHh
Confidence            555554

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.32  E-value=0.39  Score=46.73  Aligned_cols=43  Identities=28%  Similarity=0.583  Sum_probs=34.0

Q ss_pred             CCeeeecccccccc---cccccccCCeeecccchhccC------CCCCCCCcC
Q 020280           83 PEVFDCPICYESLT---APVFQCENGHIACSTCCSKIM------NKCPSCCTP  126 (328)
Q Consensus        83 ~~~l~CpiC~~~l~---~Pv~~c~CGH~fC~~C~~~~~------~~CP~Cr~~  126 (328)
                      ...|.|||=.+--.   ||+ +-.|||++|+.=+.++.      .+||+|-..
T Consensus       332 HSvF~CPVlKeqtsdeNPPm-~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPM-MLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             cceeecccchhhccCCCCCe-eeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            55799999777543   566 78999999999999882      579999654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.13  E-value=0.32  Score=47.48  Aligned_cols=41  Identities=34%  Similarity=0.683  Sum_probs=33.2

Q ss_pred             eeeccccccccccccc----ccCCeeecccchhcc-----CCCCCCCCcC
Q 020280           86 FDCPICYESLTAPVFQ----CENGHIACSTCCSKI-----MNKCPSCCTP  126 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~----c~CGH~fC~~C~~~~-----~~~CP~Cr~~  126 (328)
                      -.||||++-+.-|.-.    -.|||.|-+.|+++|     ...||.|...
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            4799999988766522    369999999999999     3689999865

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=85.12  E-value=0.36  Score=35.68  Aligned_cols=38  Identities=32%  Similarity=0.792  Sum_probs=23.2

Q ss_pred             eeecccccccccccccccCCeeecccchhcc--CCCCCCCCcCCc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI--MNKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~--~~~CP~Cr~~~~  128 (328)
                      +.||.|...|.. .    -|+..|..|....  ...||.|..++.
T Consensus         2 ~~CP~C~~~L~~-~----~~~~~C~~C~~~~~~~a~CPdC~~~Le   41 (70)
T PF07191_consen    2 NTCPKCQQELEW-Q----GGHYHCEACQKDYKKEAFCPDCGQPLE   41 (70)
T ss_dssp             -B-SSS-SBEEE-E----TTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred             CcCCCCCCccEE-e----CCEEECccccccceecccCCCcccHHH
Confidence            579999998553 2    3899999998876  368999988764

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=83.75  E-value=0.49  Score=28.07  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=12.8

Q ss_pred             eeccccccccccccccc-CCeee
Q 020280           87 DCPICYESLTAPVFQCE-NGHIA  108 (328)
Q Consensus        87 ~CpiC~~~l~~Pv~~c~-CGH~f  108 (328)
                      .||.|...+..-...|+ |||.|
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCC
Confidence            47777776544333565 66655

Several members are annotated as putative helicases.

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=83.42  E-value=0.41  Score=36.17  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=32.4

Q ss_pred             eeecccccccccccccc---------------cCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           86 FDCPICYESLTAPVFQC---------------ENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c---------------~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      -.|.||+..+..+-.+|               .|.|.|=..||.+|   .+.||.+++.+..
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            35777777666543333               37789999999999   4789999987654

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=82.78  E-value=1  Score=47.86  Aligned_cols=43  Identities=33%  Similarity=0.782  Sum_probs=36.7

Q ss_pred             CCeeeecccccccc--ccccccc-CCeeecccchhcc----------CCCCCCCCc
Q 020280           83 PEVFDCPICYESLT--APVFQCE-NGHIACSTCCSKI----------MNKCPSCCT  125 (328)
Q Consensus        83 ~~~l~CpiC~~~l~--~Pv~~c~-CGH~fC~~C~~~~----------~~~CP~Cr~  125 (328)
                      .+.+.|-||.+-+.  .||+.|. |-|+|=..||.+|          ...||.|+.
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            56799999999875  6888886 9999999999999          258999984

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.02  E-value=0.3  Score=50.17  Aligned_cols=37  Identities=30%  Similarity=0.771  Sum_probs=29.7

Q ss_pred             Ceeeecccccccc----cccccccCCeeecccchhcc-CCCCC
Q 020280           84 EVFDCPICYESLT----APVFQCENGHIACSTCCSKI-MNKCP  121 (328)
Q Consensus        84 ~~l~CpiC~~~l~----~Pv~~c~CGH~fC~~C~~~~-~~~CP  121 (328)
                      +.|.|+||+..|.    .|| .-.|||+.|+.|.+++ ...||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pv-sl~cghtic~~c~~~lyn~scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPV-SLQCGHTICGHCVQLLYNASCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcc-cccccchHHHHHHHhHhhccCC
Confidence            4678999977653    577 4579999999999988 56788

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
2a25_A	193	Crystal Structure Of Siah1 Sbd Bound To The Peptide		4e-06
1k2f_A	190	Siah, Seven In Absentia Homolog Length = 190		2e-05
2an6_A	191	Protein-Peptide Complex Length = 191		2e-05

>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFS 195
           V  SV   C+ ++ GC++T+ + +K DHE++C   P SCP P   C + GS + +  H  
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 196 AKHKN 200
            +HK+
Sbjct: 61  HQHKS 65

>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 141 SVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSAKH 198
           SV   C+ ++ GC++T+ + +K +HE++C   P SCP P   C + GS + +  H   +H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 199 KN 200
           K+
Sbjct: 61  KS 62

>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 141 SVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSAKH 198
           SV   C+ ++ GC++T+ + +K +HE++C   P SCP P   C + GS + +  H   +H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 199 KN 200
           K+
Sbjct: 62  KS 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	1e-30
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-15
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-12
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	4e-11
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	9e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	6e-04

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score =  113 bits (284), Expect = 1e-30
 Identities = 38/190 (20%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVP--CSCPIPDCNFVGSANHLYKHFS 195
           V  SV   C+ ++ GC++T+ + +K DHE++C   P  C CP   C + GS + +  H  
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 196 AKHKNSALHFLYNEVVEVT----LNVKNRFIVLQEEGDGVLFILSSRSETLGHVIS---V 248
            +HK+       + V   T        +  ++    G   + +L  + +  GH      V
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 249 SCIAPSCKGCLF-YSIFAGPAGSTVRFQSFTKNIQNRVDNP-PSTGFLLVP---IESFGS 303
             I    +   F Y +        + +++  ++I   +     ++  L+      + F  
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180

Query: 304 SGDLKLELCI 313
           +G+L + + I
Sbjct: 181 NGNLGINVTI 190

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 69.5 bits (170), Expect = 5e-15
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 83  PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGYNRC---RAI 135
              ++CPIC  +L   V Q   GH  C  C  K +    +KCP     +  N+       
Sbjct: 16  ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 136 EKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCP 177
           ++ + S+ V C N   GC   M      DH+  C        
Sbjct: 75  KREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 62.8 bits (152), Expect = 4e-12
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 83  PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMN----KCPSCCTPIGYNRC---RAI 135
              ++CPIC  +L   V Q   GH  C  C  K +     KCP     +  N+       
Sbjct: 16  ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 136 EKVLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKH 193
           ++ + S+ V C N   GC   M      DH+  C      C  P C       H+  H
Sbjct: 75  KREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIH 128

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 59.4 bits (143), Expect = 4e-11
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 83  PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNK----CPSCCTPIGYNRC------ 132
              + C  C   L  P  Q + GH  CS C + I++     C +C     Y         
Sbjct: 29  EAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87

Query: 133 ------RAIEKVLESVKVTCRNSNYGCKVTMSYGKKHD-HEKICPHVPCSCP 177
                  A  + +ES+   C +   GC    +  +    HE  CP +     
Sbjct: 88  SSAFPDNAARREVESLPAVCPSD--GCTWKGTLKEYESCHEGRCPLMLLEHH 137

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 86  FDCPICYESLTAPVFQCENGHIACSTCCSKIMN----KCPSCCTPIGYNRC----RAIEK 137
             C IC   L  PV +    H+ C  C  + +      CPSC  P          ++   
Sbjct: 24  ISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82

Query: 138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKIC 169
           +L S+ V C      C   +S  K + H    
Sbjct: 83  ILNSLMVKCPAQ--DCNEEVSLEKYNHHVSSH 112

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 83  PEVFDCPICYESLTAPVFQCENGHIACSTC----CSKIMNKCPSCCTPIGYN---RCRAI 135
            EVF C IC E L           + C +C     ++   +CP C  P+       CR  
Sbjct: 20  AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA 79

Query: 136 EKVLESVK 143
           E+V + + 
Sbjct: 80  EEVTQQLD 87

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 88  CPICYESLTAPVFQCENGHIACSTCCSK-IMNKCPSCCTPIGYNRCR---AIEKVLESVK 143
           C  C   L  PV      HI CS C S  I   CP C TP      +    ++ +++   
Sbjct: 25  CSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCS 84

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 83  PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMN----KCPSCCTPIGYN 130
            + + C  C+  L +P  Q E GH  C +C + +++    KC +C   I  +
Sbjct: 13  EDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 84  EVFDCPICYESLTAPVFQCENGHIACSTCCSKIM---NKCPSCCTPIGYNR 131
               C IC   L       E  H  C +C  +     N+CP C   +   +
Sbjct: 14  PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 65  LDLAGPSRNGPFSVTVTD-PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNK---C 120
           +D    SR  P    +    ++  C IC+E     +   +  H  CS C  K ++    C
Sbjct: 1   MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQC 60

Query: 121 PSCCTPIGYN---RCRAIEKVLESVK 143
           P+CC  +        R ++++++S+ 
Sbjct: 61  PTCCVTVTEPDLKNNRILDELVKSLN 86

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 82  DPEVFDCPICYESLTAPVF-QCENGHIACSTCCSKIMNK---CPSCCTPIG--YNRCRAI 135
           +   F C IC ++   PV  +C   H  C +C  +       C  C  P G  +N  + +
Sbjct: 12  EEIPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTGGIFNPAKEL 69

Query: 136 EKVLESVK 143
              L+   
Sbjct: 70  MAKLQKSG 77

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 8/122 (6%)

Query: 15  PSGNSKRQRRAPHRHPQTNLRDGEEEEEETHHQEEDDESVDNGGNGEKADLDLAGPSRNG 74
              +    R +P         D  E  E      +    +      +K   ++      G
Sbjct: 9   HHSSGLVPRGSPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEG 68

Query: 75  PFSVTVTDPEVFDCPICYESLTAPVF-QCENGHIACSTCCSKIMNK----CPSCCTPIGY 129
           P +      + F C  C E +  PV  +C   H  C  C  +        CP+C   +G 
Sbjct: 69  P-NFLKKLEQSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125

Query: 130 NR 131
           N 
Sbjct: 126 NY 127

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 86  FDCPICYESLTAPVFQCENGHIACSTCCSKIM---NKCPSCCTPIGYNRC 132
             C +C           E  H  C TC  + +     CP C   +   R 
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	99.97
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.88
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.66
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.61
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.59
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.0
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.97
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.97
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.93
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.9
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.9
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.88
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.85
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.84
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.84
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.82
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.82
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.81
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.81
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.8
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.8
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.78
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.78
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.77
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.75
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.74
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.73
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.71
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.7
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.69
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.69
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.65
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.65
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.64
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.63
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.63
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.61
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.6
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.57
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.54
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.53
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.5
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.5
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.48
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.48
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.47
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.47
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.43
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.4
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.39
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.26
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.24
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.22
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.21
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.14
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.12
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.09
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	98.04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.02
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.97
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.96
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.94
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.92
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.79
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.79
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.71
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.64
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.61
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.51
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.81
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.56
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.21
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.11
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.02
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	94.54
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.21
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	92.36
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	91.32
3nw0_A	238	Non-structural maintenance of chromosomes element	91.22
1z60_A	59	TFIIH basal transcription factor complex P44 subun	87.7
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	87.29
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	84.62
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	84.25
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	83.6
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	83.48
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	82.7
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	81.81

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=99.97  E-value=1.6e-32  Score=242.27  Aligned_cols=177  Identities=22%  Similarity=0.429  Sum_probs=105.6

Q ss_pred             eeeeeeeecccCCCCCceEEeecccccccCCCCCCCccCCCCC--CCcccccchHhhHhhhhcCCCceeEEeceEEEEEE
Q 020280          138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPD--CNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTL  215 (328)
Q Consensus       138 ~l~~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~g--C~~~g~~~~L~~Hl~~~H~~~~~~~~y~~~~~~~l  215 (328)
                      ++++++++|+|+.+||++.++|.++..||+.|+|+|+.||.+|  |+|.|+.++|..|+...|+|...- .......+..
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~-~g~~i~f~~~   79 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTL-QGEDIVFLAT   79 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEE-ESSEEEEEEE
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCccee-cCceEEEEec
Confidence            3678999999999999999999999999999999999999977  999999999999999999984321 1111112233


Q ss_pred             ec----CCcEEEEEeccCceEEEEeeccc--cccc---EEEEEeecC-CCCCCceEEEEEecCCCeEEEeeeeeeecccc
Q 020280          216 NV----KNRFIVLQEEGDGVLFILSSRSE--TLGH---VISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRV  285 (328)
Q Consensus       216 ~~----~~~~~vl~~~~d~~lFll~~~~~--~~g~---~vsV~cIgp-~~a~~f~Yel~~~~~~~~l~~~s~~~~i~~~~  285 (328)
                      ++    +.+|++++ .++|..|+|+....  +.|.   +++|+|||| .+|++|+|+|++.+++++|+|+++++++.+..
T Consensus        80 ~~~l~~~~~~~~v~-~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~  158 (193)
T 2a25_A           80 DINLPGAVDWVMMQ-SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGI  158 (193)
T ss_dssp             CCC----CEEEEEE-EETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCS
T ss_pred             ccccccceeEEEEE-EecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcc
Confidence            32    23566555 57889999986544  3442   679999998 45789999999999999999999999986544


Q ss_pred             CC-CCCcCeEEEcCc---ccCCCCceEEEEEEEec
Q 020280          286 DN-PPSTGFLLVPIE---SFGSSGDLKLELCIRRL  316 (328)
Q Consensus       286 ~~-~~~~~fL~VP~~---ll~~~~~l~l~V~I~~~  316 (328)
                      .. .++.+||+||..   +|.+++.|+|+|+|+++
T Consensus       159 ~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~~  193 (193)
T 2a25_A          159 ATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC  193 (193)
T ss_dssp             HHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEEC
T ss_pred             cccccCCCEEEEcHHHHHhhcCCCeEEEEEEEEeC
Confidence            33 456789999975   46777899999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.88  E-value=5.3e-24  Score=183.88  Aligned_cols=123  Identities=24%  Similarity=0.413  Sum_probs=113.0

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeeeeeecccCCCCCce
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESVKVTCRNSNYGCKV  155 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~n~~~GC~~  155 (328)
                      .+.|.|+||++++.+|+ +++|||+||..|+.+|    ...||.|+.++..   .++..+++++.+++|+|+|.  ||+|
T Consensus        16 ~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~--GC~~   92 (170)
T 3hcs_A           16 ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLH   92 (170)
T ss_dssp             CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCST--TCCC
T ss_pred             CCCCCCCCCChhhcCcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCC--CCCc
Confidence            56899999999999998 6899999999999998    2489999999875   36788899999999999985  9999


Q ss_pred             EEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEeceE
Q 020280          156 TMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNEV  210 (328)
Q Consensus       156 ~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~~  210 (328)
                      .+++.++.+|++.|+|+++.||  +|++.+.+.+|..|+...|..+...+.|...
T Consensus        93 ~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~  145 (170)
T 3hcs_A           93 KMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDNCAA  145 (170)
T ss_dssp             EEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTTTCC
T ss_pred             eecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCCCCC
Confidence            9999999999999999999998  8999999999999999999999999988753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.66  E-value=2.7e-17  Score=133.54  Aligned_cols=88  Identities=28%  Similarity=0.489  Sum_probs=77.6

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeeeeeecccCCCCCce
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESVKVTCRNSNYGCKV  155 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l~v~C~n~~~GC~~  155 (328)
                      .+.+.|+||++++.+|+ +++|||+||..|+.+|    ...||.|+.++..   .++..+++++.++++.|+|  .||+|
T Consensus        16 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC~~   92 (118)
T 3hct_A           16 ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLH   92 (118)
T ss_dssp             CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTCCC
T ss_pred             CCCCCCCcCChhhcCeE-ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCCCC
Confidence            56789999999999998 6799999999999998    2489999999874   3678888999999999998  59999


Q ss_pred             EEeecccccccCCCCCCC
Q 020280          156 TMSYGKKHDHEKICPHVP  173 (328)
Q Consensus       156 ~~~~~~~~~He~~C~~~~  173 (328)
                      .+++.++++|+++|.+..
T Consensus        93 ~~~~~~l~~H~~~c~~~~  110 (118)
T 3hct_A           93 KMELRHLEDHQAHCEFAL  110 (118)
T ss_dssp             EEEGGGSGGGTSSSCC--
T ss_pred             EEeeHHHHHHHHHchhhh
Confidence            999999999999998864

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.61  E-value=1.9e-17  Score=138.70  Aligned_cols=86  Identities=28%  Similarity=0.560  Sum_probs=75.0

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCcc------------ccccccceeeeeeeeec
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGY------------NRCRAIEKVLESVKVTC  146 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~------------~r~~~le~~l~~l~v~C  146 (328)
                      .+.|.|+||++++.+|+ ++.|||+||..|+.+|.    ..||.||.++..            .++..+++++.+++|+|
T Consensus        29 ~~~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~C  107 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVC  107 (141)
T ss_dssp             CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEEC
T ss_pred             CcCcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccccc
Confidence            56799999999999998 78999999999999982    389999987531            25677888999999999


Q ss_pred             ccCCCCCceEEeeccccc-ccCCCCC
Q 020280          147 RNSNYGCKVTMSYGKKHD-HEKICPH  171 (328)
Q Consensus       147 ~n~~~GC~~~~~~~~~~~-He~~C~~  171 (328)
                      +|  .||.|.+.+.++++ |+..|+-
T Consensus       108 pn--~GC~~~~~l~~l~~~H~~~~~~  131 (141)
T 3knv_A          108 PS--DGCTWKGTLKEYESCHEGRCPL  131 (141)
T ss_dssp             CS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred             CC--CCCCCEeEHHHHHHHHHHHhHH
Confidence            99  59999999999998 9999864

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.59  E-value=9.6e-17  Score=129.65  Aligned_cols=86  Identities=26%  Similarity=0.508  Sum_probs=75.9

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc----ccccccceeeeeeeeecccCCCCCce
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY----NRCRAIEKVLESVKVTCRNSNYGCKV  155 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l~v~C~n~~~GC~~  155 (328)
                      +.+.|+||++++.+|+ +++|||+||..|+.+|    ...||.|+.++..    ..+..+.+++..+++.|+|.  ||+|
T Consensus        22 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~~   98 (116)
T 1rmd_A           22 KSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCNE   98 (116)
T ss_dssp             HHTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCCC
T ss_pred             CCCCCCCCCcHhcCcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCcc
Confidence            4678999999999999 5899999999999988    3589999999764    23566788899999999997  9999


Q ss_pred             EEeecccccccCCCCCC
Q 020280          156 TMSYGKKHDHEKICPHV  172 (328)
Q Consensus       156 ~~~~~~~~~He~~C~~~  172 (328)
                      .+++.++.+|+++|.+.
T Consensus        99 ~~~~~~~~~H~~~C~~~  115 (116)
T 1rmd_A           99 EVSLEKYNHHVSSHKES  115 (116)
T ss_dssp             EEEHHHHHHHHHTSCCC
T ss_pred             hhhHhHHHHHHHHhhcc
Confidence            99999999999999874

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.00  E-value=4.3e-11  Score=89.28  Aligned_cols=59  Identities=22%  Similarity=0.400  Sum_probs=48.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.+.||||++++.+|+ .++|||+||..|+.+|    ...||.|+.++..   .+|..++++++.+
T Consensus         6 ~~~~~C~IC~~~~~~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~   71 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW   71 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred             cccCCCCCccccccCCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence            45789999999999999 6799999999999988    2579999998763   3567776666543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.97  E-value=2.7e-10  Score=84.91  Aligned_cols=56  Identities=29%  Similarity=0.729  Sum_probs=45.6

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----------CCCCCCCCcCCcc---ccccccceee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----------MNKCPSCCTPIGY---NRCRAIEKVL  139 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----------~~~CP~Cr~~~~~---~r~~~le~~l  139 (328)
                      .+.+.|+||++.+.+|+ ..+|||.||..|+.+|          ...||.|+..+..   .+|..+++++
T Consensus        10 ~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A           10 QEEVTCPICLELLTEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             CCCCEETTTTEECSSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             ccCCCCcCCCcccCCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            45789999999999999 5799999999999986          2479999998763   3566666554

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.97  E-value=6e-11  Score=91.29  Aligned_cols=61  Identities=21%  Similarity=0.495  Sum_probs=48.5

Q ss_pred             CCeeeeccccccccccccccc-CCeeecccchhccC-----CCCCCCCcCCc----cccccccceeeeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCE-NGHIACSTCCSKIM-----NKCPSCCTPIG----YNRCRAIEKVLESVKV  144 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~~-----~~CP~Cr~~~~----~~r~~~le~~l~~l~v  144 (328)
                      .+.+.|+||+++|.+|+ +.+ |||+||..|+.+|.     ..||.|+.++.    ...|..+.++++.++-
T Consensus        11 ~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~   81 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN   81 (92)
T ss_dssp             CTTTEETTTTEECSSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred             CcCCCCCCCChhhcCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence            45789999999999999 577 99999999999882     58999999873    2456666666655543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=7.2e-10  Score=83.36  Aligned_cols=56  Identities=30%  Similarity=0.675  Sum_probs=45.8

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---------CCCCCCCCcCCcc---ccccccceee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---------MNKCPSCCTPIGY---NRCRAIEKVL  139 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~~l  139 (328)
                      .+.+.|+||++.+.+|+ ..+|||.||..|+.+|         ...||.|+..+..   .+|..+++++
T Consensus        17 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCTTTCSCCSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             cCCCCCCCCCcccCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            45789999999999998 5799999999999887         3689999998763   3566666554

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.90  E-value=5.7e-10  Score=78.15  Aligned_cols=46  Identities=24%  Similarity=0.482  Sum_probs=41.0

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccCCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+ ..+|||+||..|+.++...||.||..+..
T Consensus         4 ~~~~~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCS-CSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeE-EcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence            45688999999999998 68999999999999887899999998753

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.90  E-value=5.8e-10  Score=83.90  Aligned_cols=56  Identities=29%  Similarity=0.695  Sum_probs=45.4

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---------CCCCCCCCcCCcc---ccccccceee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---------MNKCPSCCTPIGY---NRCRAIEKVL  139 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---------~~~CP~Cr~~~~~---~r~~~le~~l  139 (328)
                      .+.+.|+||++.+.+|+ ..+|||.||..|+.+|         ...||.|+..+..   .+|..+++++
T Consensus        17 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CTTTSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             ccCCCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            45689999999999999 6899999999999886         2479999998763   3566666554

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=7.9e-10  Score=81.19  Aligned_cols=47  Identities=26%  Similarity=0.511  Sum_probs=40.8

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+....|||.||..|+.+|   ...||.||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            4578999999999999954589999999999988   4789999998764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.85  E-value=2.5e-10  Score=86.97  Aligned_cols=58  Identities=14%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc---ccccccceeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLES  141 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~  141 (328)
                      ++.|.||||+++|++|| ...|||+||..||.+|   ...||.|+.++..   .+|..+.+++..
T Consensus        12 p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~   75 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPV-RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQA   75 (85)
T ss_dssp             CTTTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred             chheECcccCchhcCCe-ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHH
Confidence            55789999999999999 6789999999999998   4789999998763   356666555543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-09  Score=80.35  Aligned_cols=45  Identities=27%  Similarity=0.636  Sum_probs=39.2

Q ss_pred             CCeeeeccccccccccccccc-CCeeecccchhccC-----CCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCE-NGHIACSTCCSKIM-----NKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~~-----~~CP~Cr~~~~  128 (328)
                      .+.+.|+||++++.+|+ +.+ |||+||..|+.+|.     ..||.||.++.
T Consensus        13 ~~~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCTTCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHhCCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            45789999999999999 577 99999999999982     58999999753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=79.00  Aligned_cols=46  Identities=30%  Similarity=0.696  Sum_probs=40.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+ +..|||.||..|+.+|.    ..||.|+.++..
T Consensus        13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            45789999999999999 57999999999999882    579999998753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.82  E-value=7.2e-10  Score=86.77  Aligned_cols=59  Identities=12%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             CCeeeecccccccccccccccCC-eeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENG-HIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CG-H~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.|.||||+++|++|| ...|| |+||..||.+|   ...||.|+.++..   .+|..|.+++..+
T Consensus        20 p~~~~CpI~~~~m~dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~   85 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRW   85 (98)
T ss_dssp             CTTTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred             cHhcCCcCccccccCCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence            66899999999999999 68899 99999999998   3689999998863   4566666666554

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.4e-09  Score=78.52  Aligned_cols=46  Identities=39%  Similarity=0.777  Sum_probs=39.9

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC------CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM------NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~------~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+ ...|||.||..|+.+|.      ..||.|+.++..
T Consensus        18 ~~~~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEE-ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeE-EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            45789999999999999 56999999999999984      279999998753

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=78.80  Aligned_cols=45  Identities=27%  Similarity=0.594  Sum_probs=39.7

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+.+.|+||++.+.+|+ ..+|||.||..|+.+|   ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SSCCBCSSSSSBCSSEE-EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCCccCCcccCCCE-EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            45678999999999998 5799999999999988   368999999876

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.81  E-value=2.8e-10  Score=88.87  Aligned_cols=60  Identities=25%  Similarity=0.709  Sum_probs=47.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      .+.+.|+||++.+.+|+...+|||.||..|+.+|   ...||.|+..+..   .+|..++++++.+
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~   85 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSL   85 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHH
Confidence            3468999999999999843489999999999988   3689999998763   3566666655443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.80  E-value=3.7e-10  Score=91.81  Aligned_cols=57  Identities=26%  Similarity=0.618  Sum_probs=45.5

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc----ccccccceeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY----NRCRAIEKVLE  140 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~  140 (328)
                      .+.+.|+||++++.+|+ ..+|||+||..|+.+|    ...||.||.++..    ..|..+.+++.
T Consensus        50 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~  114 (124)
T 3fl2_A           50 EETFQCICCQELVFRPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLN  114 (124)
T ss_dssp             HHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHH
T ss_pred             ccCCCCCcCChHHcCcE-EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHH
Confidence            45689999999999999 6799999999999888    2489999998864    34555555543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.80  E-value=1.2e-09  Score=85.82  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.|.||||+++|++|| ..+|||+||..||.+|   ...||.|+.++..   .+|..+.+++..+
T Consensus        27 p~~~~CpI~~~~m~dPV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~   91 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAW   91 (100)
T ss_dssp             STTTBCTTTCSBCSSEE-EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred             cHhhCCcCccCcccCCe-ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHH
Confidence            56789999999999999 6789999999999998   3689999998763   3566666655443

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=2.6e-09  Score=80.19  Aligned_cols=45  Identities=29%  Similarity=0.665  Sum_probs=39.9

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+.+.|+||++.+.+|+ ..+|||+||..|+.+|   ...||.|+.++.
T Consensus        13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPV-VTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSEE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCee-EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34679999999999999 5899999999999988   468999999875

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.78  E-value=4.8e-10  Score=87.90  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=40.6

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---C-CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---M-NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~-~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++++..|+....|||+||..|+.+|   . ..||.||.++..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            4568999999999999943789999999999998   3 589999998763

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.77  E-value=1.2e-09  Score=90.54  Aligned_cols=45  Identities=29%  Similarity=0.576  Sum_probs=39.8

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      +.+.|+||++.+.+|+ .++|||.||..|+.+|   ...||.||.++..
T Consensus        52 ~~~~C~iC~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSEE-EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCce-ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            3578999999999999 6799999999999998   4689999998763

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.75  E-value=7e-10  Score=93.49  Aligned_cols=58  Identities=28%  Similarity=0.595  Sum_probs=46.8

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCccc----cccccceeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIGYN----RCRAIEKVLES  141 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~~~----r~~~le~~l~~  141 (328)
                      .+.+.|+||++++.+|+ .++|||+||..|+.+|.    ..||.|+.++...    .|..+.+++..
T Consensus        76 ~~~~~C~IC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~  141 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL  141 (150)
T ss_dssp             HHHTBCTTTSSBCSSEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHH
T ss_pred             ccCCEeecCChhhcCCE-EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence            34689999999999999 58999999999999882    3799999998643    56666665543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.74  E-value=9.5e-10  Score=87.21  Aligned_cols=47  Identities=21%  Similarity=0.400  Sum_probs=40.6

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+....|||+||..|+.+|   ...||.|+..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            4578999999999999943499999999999998   4689999998764

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.73  E-value=1.1e-09  Score=88.29  Aligned_cols=58  Identities=29%  Similarity=0.649  Sum_probs=45.6

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC-CCCCCCCcCCcc---ccccccceeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM-NKCPSCCTPIGY---NRCRAIEKVLE  140 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-~~CP~Cr~~~~~---~r~~~le~~l~  140 (328)
                      .+.+.|+||++++.+|+...+|||+||..|+.+|. ..||.|+.++..   .+|..+.+++.
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~   81 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQ   81 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHH
Confidence            44689999999999999433899999999999984 589999998753   34555555544

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.71  E-value=3.6e-09  Score=76.99  Aligned_cols=47  Identities=34%  Similarity=0.794  Sum_probs=40.1

Q ss_pred             CCeeeeccccccccccc------ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPV------FQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+      ....|||.||..|+.+|   ...||.||.++..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            45789999999999882      36789999999999998   4789999998763

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=9.6e-09  Score=73.18  Aligned_cols=40  Identities=43%  Similarity=0.893  Sum_probs=35.1

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC------CCCCCC
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM------NKCPSC  123 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~------~~CP~C  123 (328)
                      .+.+.|+||++.+.+|+ ..+|||+||..|+.+|.      ..||.|
T Consensus        18 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            45789999999999999 57999999999999882      379987

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=9.1e-09  Score=77.99  Aligned_cols=46  Identities=39%  Similarity=0.853  Sum_probs=39.6

Q ss_pred             CCeeeeccccccccc----ccccccCCeeecccchhcc---C---CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTA----PVFQCENGHIACSTCCSKI---M---NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~----Pv~~c~CGH~fC~~C~~~~---~---~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+..    |+ ..+|||.||..|+.+|   .   ..||.||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPK-LLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEE-ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeE-ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            456899999999998    88 5799999999999998   2   589999998653

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=5.9e-09  Score=75.28  Aligned_cols=46  Identities=35%  Similarity=0.827  Sum_probs=39.0

Q ss_pred             CCeeeeccccccccccc------ccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPV------FQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+.+.|+||++.+.+|.      ....|||.||..|+.+|   ...||.||.++.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            45678999999998872      26789999999999998   468999998765

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.65  E-value=5.6e-09  Score=83.58  Aligned_cols=45  Identities=29%  Similarity=0.628  Sum_probs=39.7

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC----CCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~  128 (328)
                      .+.+.|+||++.+.+|+ ...|||+||..|+.+|.    ..||.|+..+.
T Consensus        13 ~~~~~C~iC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           13 LSECQCGICMEILVEPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHHBCTTTCSBCSSCE-ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCccCCcccCcee-EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            44789999999999999 56999999999999982    47999999875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.65  E-value=4.4e-09  Score=83.49  Aligned_cols=56  Identities=30%  Similarity=0.783  Sum_probs=43.8

Q ss_pred             CeeeecccccccccccccccCCeeecccchhccC------CCCCCCCcCCcc---ccccccceeee
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKIM------NKCPSCCTPIGY---NRCRAIEKVLE  140 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~------~~CP~Cr~~~~~---~r~~~le~~l~  140 (328)
                      +.+.|+||++.+.+|+ ..+|||.||..|+.+|.      ..||.|+.++..   .++..+.+++.
T Consensus        20 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~   84 (112)
T 1jm7_A           20 KILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVE   84 (112)
T ss_dssp             HHTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHH
T ss_pred             CCCCCcccChhhcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHH
Confidence            3578999999999999 57999999999999882      379999998763   23444444443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.64  E-value=5.7e-09  Score=74.92  Aligned_cols=45  Identities=29%  Similarity=0.756  Sum_probs=38.0

Q ss_pred             Ceeeeccccc-cccccc---ccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           84 EVFDCPICYE-SLTAPV---FQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~-~l~~Pv---~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      +.+.||||++ .+.+|+   ....|||+||..|+.+|    ...||.|+.++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            4578999999 899884   24689999999999998    257999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2e-09  Score=83.51  Aligned_cols=59  Identities=25%  Similarity=0.509  Sum_probs=45.9

Q ss_pred             CCeeeecccccccccccccc-cCCeeecccchhccC---------CCCCC--CCcC-Ccc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQC-ENGHIACSTCCSKIM---------NKCPS--CCTP-IGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c-~CGH~fC~~C~~~~~---------~~CP~--Cr~~-~~~---~r~~~le~~l~~l  142 (328)
                      .+.|.||||+++|.+|| .. .|||+||..||.+|.         ..||.  |+.. +..   .+|..|.+++..+
T Consensus         5 ~~~~~CPI~~~~~~dPV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~   79 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH   79 (94)
T ss_dssp             SSCCBCTTTCSBCSSEE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred             CcEeECcCcCchhcCCE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence            45789999999999999 56 499999999999881         28999  8865 442   4566666666544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=3.7e-09  Score=96.72  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.|.||||++++.+|| +++|||+||..||.+|    ...||.|+.++..   .+|..+.+++..+
T Consensus       206 ~~~~~c~i~~~~~~dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~  271 (281)
T 2c2l_A          206 PDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF  271 (281)
T ss_dssp             CSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred             CcccCCcCcCCHhcCCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence            56889999999999999 6889999999999988    2349999999863   3566666666543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.63  E-value=1.6e-08  Score=72.94  Aligned_cols=45  Identities=27%  Similarity=0.583  Sum_probs=39.1

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      ...|+||++.+.+|+...+|||.||..|+.+|   ...||.||.++..
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            46899999999998557789999999999988   5789999998763

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.63  E-value=6.2e-09  Score=74.01  Aligned_cols=46  Identities=35%  Similarity=0.826  Sum_probs=38.8

Q ss_pred             Ceeeeccccccccccc------ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTAPV------FQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      +.+.|+||++.+..|.      ....|||.||..|+.+|   ...||.||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            3578999999998872      36789999999999988   4689999998763

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.61  E-value=3.9e-09  Score=89.95  Aligned_cols=59  Identities=20%  Similarity=0.487  Sum_probs=46.8

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc----ccccccceeeeee
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY----NRCRAIEKVLESV  142 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~----~r~~~le~~l~~l  142 (328)
                      +.+.|+||++.+.+|+...+|||+||..|+.+|    ...||.|+.++..    ..|..+++++..+
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~  119 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKI  119 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence            467999999999999944489999999999998    3579999998853    2455566665554

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=2e-08  Score=70.06  Aligned_cols=40  Identities=35%  Similarity=0.764  Sum_probs=34.8

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc------CCCCCCC
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI------MNKCPSC  123 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~------~~~CP~C  123 (328)
                      .+.+.|+||++.+.+|+ ..+|||+||..|+.+|      ...||.|
T Consensus        13 ~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45679999999999998 5799999999999988      1578887

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.57  E-value=1.9e-08  Score=75.35  Aligned_cols=47  Identities=32%  Similarity=0.792  Sum_probs=37.3

Q ss_pred             CCeeeecccccccc--ccc-ccccCCeeecccchhcc----CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLT--APV-FQCENGHIACSTCCSKI----MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~--~Pv-~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~  129 (328)
                      .+.+.||||++++.  ++. +.|.|||.||..|+.++    ...||.||+++..
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            45789999999985  333 23569999999999887    3589999998763

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.54  E-value=4e-08  Score=67.83  Aligned_cols=44  Identities=20%  Similarity=0.480  Sum_probs=36.2

Q ss_pred             Ceeeeccccccccc---cccccc-CCeeecccchhcc---CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTA---PVFQCE-NGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~---Pv~~c~-CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      +...|+||++.+..   ++ ..+ |||.||..|+.+|   ...||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEAR-FLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCE-ECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceE-ECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            34689999999876   55 455 9999999999998   468999998753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.53  E-value=3.7e-08  Score=67.94  Aligned_cols=45  Identities=29%  Similarity=0.680  Sum_probs=36.7

Q ss_pred             Ceeeeccccccccc---ccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTA---PVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~---Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      +...|+||++.+.+   ++....|||.||..|+.+|   ...||.||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            35689999999865   2336789999999999998   478999998763

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.50  E-value=1.1e-08  Score=88.32  Aligned_cols=59  Identities=15%  Similarity=0.208  Sum_probs=48.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---C-CCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---M-NKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~-~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.|.||||+++|.+|| ..+|||+||..||.+|   . ..||.|+.++..   .+|..+.+++..+
T Consensus       104 p~~f~CPI~~elm~DPV-~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~  169 (179)
T 2f42_A          104 PDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAF  169 (179)
T ss_dssp             CGGGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             cHhhcccCccccCCCCe-ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence            66899999999999999 5799999999999998   2 359999998864   4566666665544

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=6.2e-08  Score=71.42  Aligned_cols=46  Identities=22%  Similarity=0.418  Sum_probs=38.7

Q ss_pred             CCeeeecccccccccc--cccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAP--VFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~P--v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+...|+||++.+..+  +...+|||.||..|+.+|   ...||.||.++.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            4567899999999876  335689999999999998   478999998865

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.48  E-value=6.1e-08  Score=71.90  Aligned_cols=46  Identities=22%  Similarity=0.509  Sum_probs=38.0

Q ss_pred             Ceeeeccccccccccc--ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTAPV--FQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv--~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      +.+.|+||++.+..+.  ....|||.||..|+.+|   ...||.||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            4578999999998663  34589999999999998   4689999998763

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=2.6e-08  Score=72.34  Aligned_cols=45  Identities=22%  Similarity=0.515  Sum_probs=38.7

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+ + ..+|||.||..|+.+|   ...||.||.++..
T Consensus        13 ~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             CCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            446789999999988 5 6799999999999988   3689999988763

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.47  E-value=2.7e-08  Score=73.51  Aligned_cols=43  Identities=35%  Similarity=0.771  Sum_probs=38.7

Q ss_pred             eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~  129 (328)
                      .+.|+||++.+.+|+ ..+|||. ||..|+.+| ..||.||.++..
T Consensus        24 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV-DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCCEE-EETTCCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCCEE-EcCCCChhHHHHhhhcC-ccCCCcCcCccC
Confidence            568999999999999 4699999 999999999 799999998753

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=7.4e-08  Score=70.69  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=38.4

Q ss_pred             CCeeeeccccccccccc--ccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPV--FQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv--~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+...|+||++.+..+.  ...+|||.||..|+.+|   ...||.||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            34568999999998765  23389999999999998   4689999998754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.47  E-value=5.8e-08  Score=70.27  Aligned_cols=45  Identities=27%  Similarity=0.472  Sum_probs=36.7

Q ss_pred             eeeeccccccccc--ccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTA--PVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      ...|+||++.+..  ++...+|||.||..|+.+|   ...||.||..+..
T Consensus        14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            4689999998852  3336789999999999998   4689999998753

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=4.8e-08  Score=72.25  Aligned_cols=43  Identities=35%  Similarity=0.771  Sum_probs=38.3

Q ss_pred             eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~  129 (328)
                      .+.|+||++.+.+|+ ..+|||. ||..|+.++ ..||.||.++..
T Consensus        25 ~~~C~IC~~~~~~~~-~~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV-DKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCBC-CSSSCCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCEE-EecCCCHHHHHHHhhCC-CCCccCCceecC
Confidence            568999999999999 5799999 999999877 799999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.40  E-value=5.5e-08  Score=78.94  Aligned_cols=46  Identities=35%  Similarity=0.811  Sum_probs=40.1

Q ss_pred             CCeeeecccccccccc-------cccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAP-------VFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~P-------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|       + ...|||+||..|+.+|   ...||.|+..+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            3568999999999998       5 6899999999999998   4689999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.39  E-value=9.1e-08  Score=73.43  Aligned_cols=44  Identities=23%  Similarity=0.484  Sum_probs=37.1

Q ss_pred             Ceeeeccccccccc---ccccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTA---PVFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~---Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      +...|+||++.+..   ++ ..+|||.||..|+.+|   ...||.||..+.
T Consensus        39 ~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            46789999998876   44 5789999999999998   468999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=67.95  Aligned_cols=47  Identities=30%  Similarity=0.444  Sum_probs=37.3

Q ss_pred             CCCeeeecccccccccc--------------cccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           82 DPEVFDCPICYESLTAP--------------VFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~P--------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      |.+...|+||++.|..+              +....|||.|+..|+.+|   ...||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            44566799999999763              333459999999999998   368999998865

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=5.6e-07  Score=65.36  Aligned_cols=45  Identities=22%  Similarity=0.486  Sum_probs=38.9

Q ss_pred             CCeeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~  129 (328)
                      .+...|+||++...+++ ..+|||. ||..|.... ..||.||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v-~~pCgH~~~C~~C~~~~-~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWV-LLPCRHTCLCDGCVKYF-QQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCE-ETTTTBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEE-EECCCChhhhHHHHhcC-CCCCCCCcchhc
Confidence            34568999999999998 4799999 999999976 799999998753

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.22  E-value=4.8e-07  Score=71.94  Aligned_cols=47  Identities=30%  Similarity=0.446  Sum_probs=37.4

Q ss_pred             CCeeeecccccccccccc-----------------cccCCeeecccchhccC--------CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVF-----------------QCENGHIACSTCCSKIM--------NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~-----------------~c~CGH~fC~~C~~~~~--------~~CP~Cr~~~~~  129 (328)
                      .....|+||++.|..|..                 ...|||.||..|+.+|.        ..||+||..+..
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            344689999999976531                 35799999999999883        479999998764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.21  E-value=1.7e-07  Score=85.15  Aligned_cols=57  Identities=19%  Similarity=0.385  Sum_probs=43.7

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccC-----CCCCC--CCcCCcc---ccccccceee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIM-----NKCPS--CCTPIGY---NRCRAIEKVL  139 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~-----~~CP~--Cr~~~~~---~r~~~le~~l  139 (328)
                      ...+.||||+++|++||....|||+||+.||.++.     ..||.  |++.+..   ..|..|.+++
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lv  245 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC  245 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHH
T ss_pred             ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHH
Confidence            44689999999999999434899999999999872     36999  9987653   3455554444

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.14  E-value=5.1e-07  Score=73.16  Aligned_cols=47  Identities=34%  Similarity=0.794  Sum_probs=40.7

Q ss_pred             CCCeeeecccccccccc-------cccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           82 DPEVFDCPICYESLTAP-------VFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~P-------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      +.+.+.|+||++.+..|       + .+.|||.||..|+.+|   .+.||.||..+..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            45678899999999887       5 6789999999999998   5799999998763

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.12  E-value=5.4e-07  Score=67.42  Aligned_cols=43  Identities=28%  Similarity=0.849  Sum_probs=38.1

Q ss_pred             eeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~  129 (328)
                      ...|+||++.+.+|++ .+|||. ||..|+.++ ..||.||.++..
T Consensus        18 ~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~-~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINSTF-CPCGHTVCCESCAAQL-QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC-SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhc-CcCCCCCchhhC
Confidence            4579999999999994 699999 999999998 599999998763

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.09  E-value=8.4e-07  Score=63.55  Aligned_cols=46  Identities=33%  Similarity=0.712  Sum_probs=38.1

Q ss_pred             CCeeeeccccccccccccc-ccCCee-ecccchhcc---CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQ-CENGHI-ACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~-c~CGH~-fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .+...|+||++-..++++. .+|||. ||..|..++   ...||.||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            3456899999999999852 389999 899999988   357999999875

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=98.04  E-value=1.5e-06  Score=64.12  Aligned_cols=62  Identities=18%  Similarity=0.248  Sum_probs=46.4

Q ss_pred             eeeeeeeecccCCCCCceEEeecccccccC-CCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeE
Q 020280          138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEK-ICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHF  205 (328)
Q Consensus       138 ~l~~l~v~C~n~~~GC~~~~~~~~~~~He~-~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~  205 (328)
                      ......|.|+|   +|...+...++..|+. .|+++++.|++  |++.+.+.+|..|. ..|+.....+
T Consensus        11 ~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~-~~Cp~~~v~C   73 (76)
T 2yuc_A           11 TCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHE-GMCPQESSGP   73 (76)
T ss_dssp             CCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTT-TSCTTSSCCC
T ss_pred             HCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHH-hHCCCCccCC
Confidence            34455677875   7888888888888876 88888888885  88888888888888 4566555443

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.02  E-value=1.6e-06  Score=83.24  Aligned_cols=44  Identities=27%  Similarity=0.500  Sum_probs=38.8

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~  129 (328)
                      ...|+||++.+..|+ ..+|||.||..|+..|    ...||.||.++..
T Consensus       332 ~~~C~ICle~~~~pv-~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCEE-EETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCeE-EeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            468999999999998 6899999999999887    3689999998764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.97  E-value=2.7e-06  Score=80.80  Aligned_cols=45  Identities=29%  Similarity=0.652  Sum_probs=39.7

Q ss_pred             CCeeeecccccccccccccccCCee-ecccchhccCCCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHI-ACSTCCSKIMNKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~-fC~~C~~~~~~~CP~Cr~~~~~  129 (328)
                      .+.+.|+||++.+.+|+ ..+|||. ||..|+.++ ..||.||.++..
T Consensus       293 ~~~~~C~IC~~~~~~~v-~lpCgH~~fC~~C~~~~-~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVV-FIPCGHLVVCQECAPSL-RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCEE-EETTCCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCceE-EcCCCChhHhHHHHhcC-CcCCCCCCCccC
Confidence            34578999999999999 4699999 999999998 799999998753

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.96  E-value=2.1e-06  Score=61.03  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=38.4

Q ss_pred             eeeecccccccccccccc-cCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAPVFQC-ENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c-~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .|.|||+++++.+|| .. .+||+|++.||.+|   ...||..++++..
T Consensus         3 ~~~CpIs~~~m~dPV-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRPV-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSEE-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCCE-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            478999999999999 56 89999999999999   3579999988763

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.94  E-value=2.5e-06  Score=60.82  Aligned_cols=44  Identities=23%  Similarity=0.648  Sum_probs=36.5

Q ss_pred             eeeecccccccccccc-cccCCee-ecccchhccC---CCCCCCCcCCc
Q 020280           85 VFDCPICYESLTAPVF-QCENGHI-ACSTCCSKIM---NKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~-~c~CGH~-fC~~C~~~~~---~~CP~Cr~~~~  128 (328)
                      ...|+||++-.+++++ ..+|||. ||..|..++.   ..||.||.++.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            4579999999998873 2389998 9999999882   58999999874

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.92  E-value=3.2e-06  Score=66.81  Aligned_cols=48  Identities=23%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             CCCeeeecccccccccc-----------------cccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           82 DPEVFDCPICYESLTAP-----------------VFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~P-----------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      |.+.-.|+||++.|..+                 +....|||.|+..|+.+|   ...||+||..+.+
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            44566799999998865                 333579999999999998   4689999998653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.79  E-value=6.3e-06  Score=63.30  Aligned_cols=43  Identities=19%  Similarity=0.519  Sum_probs=33.7

Q ss_pred             Ceeeeccccccccccccc--ccCCeeecccchhcc-----------CCCCCC--CCcC
Q 020280           84 EVFDCPICYESLTAPVFQ--CENGHIACSTCCSKI-----------MNKCPS--CCTP  126 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~--c~CGH~fC~~C~~~~-----------~~~CP~--Cr~~  126 (328)
                      +.+.|+||++.+..|...  ..|||.||..|+...           ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            467899999999888632  269999999998775           126888  8776

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.79  E-value=8.4e-06  Score=60.04  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             ecccccccCCCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEece
Q 020280          159 YGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNE  209 (328)
Q Consensus       159 ~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~  209 (328)
                      ..+++.|+..|+|.++.||+ +|+..+.+.+|..|+...|..+.+.+.|..
T Consensus         2 ~~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~   51 (76)
T 2yuc_A            2 SSGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCG   51 (76)
T ss_dssp             CCSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSSSC
T ss_pred             chHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCCCC
Confidence            35788999999999999986 899999999999999999999999998864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.71  E-value=5.7e-06  Score=66.51  Aligned_cols=47  Identities=23%  Similarity=0.273  Sum_probs=2.1

Q ss_pred             CCCeeeecccccccccc-----------------cccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           82 DPEVFDCPICYESLTAP-----------------VFQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        82 d~~~l~CpiC~~~l~~P-----------------v~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      |.+.-.|+||++.|..+                 +...+|+|.|+..|+.+|   ...||.||.++.
T Consensus        45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CCCC---------------------------------------------------------------
T ss_pred             cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            44556899999998764                 222479999999999998   468999998864

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.64  E-value=1.3e-05  Score=62.02  Aligned_cols=51  Identities=22%  Similarity=0.498  Sum_probs=44.6

Q ss_pred             eeecccCCCCCceEEeecccccccCCCCCCCccCCCC--CCCcccccchHhhHhhh
Q 020280          143 KVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSA  196 (328)
Q Consensus       143 ~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~--gC~~~g~~~~L~~Hl~~  196 (328)
                      .+.|||   .|...+...+++.|...||.+.+.|++.  ||.+.+.+.+|..|++.
T Consensus        37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~   89 (100)
T 2yre_A           37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM   89 (100)
T ss_dssp             EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred             eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence            688986   6988889999999998899999999884  89999999999999884

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.61  E-value=4.7e-05  Score=58.80  Aligned_cols=82  Identities=18%  Similarity=0.355  Sum_probs=56.5

Q ss_pred             eecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCccccccccceeeeeeeeecccCCCCCceEEeeccc
Q 020280           87 DCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKK  162 (328)
Q Consensus        87 ~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~~~~~~~~  162 (328)
                      .|++|..+++.-.-.-+|.|.||.+|...+    .+.||.|+.++....     .....-.+.|+.              
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe-----~~~~~~if~C~~--------------   63 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE-----QCTRGSLFMCSI--------------   63 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE-----EEEGGGCCCCCC--------------
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE-----EeccCCEEECCC--------------
Confidence            499999988865445689999999999876    368999998875321     111122233331              


Q ss_pred             ccccCCCCCCCccCCCCCCCcc-cccchHhhHhhhhcCCCc
Q 020280          163 HDHEKICPHVPCSCPIPDCNFV-GSANHLYKHFSAKHKNSA  202 (328)
Q Consensus       163 ~~He~~C~~~~~~Cp~~gC~~~-g~~~~L~~Hl~~~H~~~~  202 (328)
                                     .++|.-. .+..+|+.|....|....
T Consensus        64 ---------------~~~CkrtyLs~rdlqaHI~~~H~~~~   89 (101)
T 3vk6_A           64 ---------------VQGCKRTYLSQRDLQAHINHRHMRAG   89 (101)
T ss_dssp             ---------------CCCCCCCCSSHHHHHHHHHHHTTTSC
T ss_pred             ---------------CCCHHHHhcCHHHHHHHHHHHhhhcC
Confidence                           3567643 367899999999997643

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=1e-05  Score=62.64  Aligned_cols=40  Identities=30%  Similarity=0.597  Sum_probs=36.1

Q ss_pred             eeeeeeeecccCCCCCceEEeecccccccCCCCCCCccCC
Q 020280          138 VLESVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCP  177 (328)
Q Consensus       138 ~l~~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp  177 (328)
                      +.....++|+|+.|||+..+...++..|++.||-..+.|.
T Consensus        59 ~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~   98 (100)
T 2yre_A           59 LCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS   98 (100)
T ss_dssp             HCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred             hcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence            3566779999999999999999999999999999988775

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.81  E-value=0.00098  Score=48.96  Aligned_cols=43  Identities=28%  Similarity=0.489  Sum_probs=36.3

Q ss_pred             eeeecccccccccccccc-cCCeeecccchhcc---C--CCCCCCCcCCc
Q 020280           85 VFDCPICYESLTAPVFQC-ENGHIACSTCCSKI---M--NKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c-~CGH~fC~~C~~~~---~--~~CP~Cr~~~~  128 (328)
                      .-.|.||++++.+-+ .| .|+|.|=..|+.+|   .  ..||.|+..+.
T Consensus        15 i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           15 VKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            457999999998655 67 59999999999998   2  68999998765

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.56  E-value=0.0011  Score=49.42  Aligned_cols=46  Identities=17%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             CCeeeecccccccc--cccccccCC-----eeecccchhcc---C--CCCCCCCcCCcc
Q 020280           83 PEVFDCPICYESLT--APVFQCENG-----HIACSTCCSKI---M--NKCPSCCTPIGY  129 (328)
Q Consensus        83 ~~~l~CpiC~~~l~--~Pv~~c~CG-----H~fC~~C~~~~---~--~~CP~Cr~~~~~  129 (328)
                      .+...|.||++-+.  .++ ..+|.     |.|...|+.+|   .  ..||+|+..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            34568999998763  455 35564     99999999999   2  489999998753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.21  E-value=0.00085  Score=56.76  Aligned_cols=74  Identities=20%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             CCCC--CCCcCCccccccccceeeeeeeeecccCCCCCceEEeeccccccc-CCCCCCCccCCCCCCCcccccchHhhHh
Q 020280          118 NKCP--SCCTPIGYNRCRAIEKVLESVKVTCRNSNYGCKVTMSYGKKHDHE-KICPHVPCSCPIPDCNFVGSANHLYKHF  194 (328)
Q Consensus       118 ~~CP--~Cr~~~~~~r~~~le~~l~~l~v~C~n~~~GC~~~~~~~~~~~He-~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl  194 (328)
                      ..||  .|...+....-...++......+.|+    ||++.+...++..|+ ..|+++++.|+  .|+..+...+|..|.
T Consensus        83 v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~--~C~~~~~~~~l~~H~  156 (170)
T 3hcs_A           83 VKCPNEGCLHKMELRHLEDHQAHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCD--NCAASMAFEDKEIHD  156 (170)
T ss_dssp             EECCSTTCCCEEEGGGHHHHHTTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECT--TTCCEEEGGGHHHHH
T ss_pred             cCCCCCCCCceecHhHHHHHHhcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECC--CCCCccCHHHHHhHH
Confidence            3565  36554432211111233344568897    899999999999998 69999999999  699999999999998


Q ss_pred             hhh
Q 020280          195 SAK  197 (328)
Q Consensus       195 ~~~  197 (328)
                      ...
T Consensus       157 ~~~  159 (170)
T 3hcs_A          157 QNC  159 (170)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            753

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.11  E-value=0.0014  Score=61.57  Aligned_cols=44  Identities=20%  Similarity=0.608  Sum_probs=36.4

Q ss_pred             eeeeccccccccc----ccccc---cCCeeecccchhccC--------------CCCCCCCcCCc
Q 020280           85 VFDCPICYESLTA----PVFQC---ENGHIACSTCCSKIM--------------NKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~----Pv~~c---~CGH~fC~~C~~~~~--------------~~CP~Cr~~~~  128 (328)
                      ...|+||+..+.+    |...|   .|||.|-..|+.+|-              +.||.|+.++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            4579999999876    66567   499999999999981              46999999865

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.02  E-value=0.0007  Score=49.43  Aligned_cols=50  Identities=22%  Similarity=0.328  Sum_probs=40.0

Q ss_pred             eeeeecccCCCCCceEEeecccccccCCCCCCCccCCCCCCCcccccchHhhHhhh
Q 020280          141 SVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVGSANHLYKHFSA  196 (328)
Q Consensus       141 ~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~  196 (328)
                      .-.+.|+    .|...+.+.++..|+..|+.+++.|+.  |+....+.+|..|+..
T Consensus        15 ~r~~~C~----~C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A           15 LRLAVCQ----HCDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCCEECS----SSCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHH
T ss_pred             CcccCCc----ccChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHH
Confidence            3456776    388888888888888888888888884  8888888888888864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.54  E-value=0.012  Score=42.68  Aligned_cols=47  Identities=19%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             cccccccC-CCCCCCccCCCCCCCcccccchHhhHhhhhcCCCceeEEece
Q 020280          160 GKKHDHEK-ICPHVPCSCPIPDCNFVGSANHLYKHFSAKHKNSALHFLYNE  209 (328)
Q Consensus       160 ~~~~~He~-~C~~~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~  209 (328)
                      .+|..|+. .|+++++.|+  .|+......+|..|. ..+..+.+.|.++.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~--~C~~~~~~~~L~~H~-~~c~~~~~~C~~C~   50 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQ--HCDLELSILKLKEHE-DYCGARTELCGNCG   50 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECS--SSCCEECHHHHHHHH-HHHHHCEEECSSSC
T ss_pred             hHHHhhCcccCCCcccCCc--ccChHhhHHHHHHHH-hHcCCCceEcccCC
Confidence            57889986 8999999998  599999999999999 77887777777653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.21  E-value=0.016  Score=44.44  Aligned_cols=32  Identities=22%  Similarity=0.463  Sum_probs=26.6

Q ss_pred             Ceeeeccccc-ccccccccc-cCCeeecccchhc
Q 020280           84 EVFDCPICYE-SLTAPVFQC-ENGHIACSTCCSK  115 (328)
Q Consensus        84 ~~l~CpiC~~-~l~~Pv~~c-~CGH~fC~~C~~~  115 (328)
                      +.+.|++|.+ ++.+|+..| .|+|.||..|+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence            3578999996 578888655 5999999999997

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=92.36  E-value=0.075  Score=36.99  Aligned_cols=46  Identities=24%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             CCeeeeccccccccccc-ccccCCe---eecccchhcc-----CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPV-FQCENGH---IACSTCCSKI-----MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv-~~c~CGH---~fC~~C~~~~-----~~~CP~Cr~~~~  128 (328)
                      .+.-.|.||+.-..+|+ .-|.|.+   .|=..|+.+|     ...||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34557999987655554 2345655   7888999999     367999998764

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=91.32  E-value=0.2  Score=37.35  Aligned_cols=34  Identities=18%  Similarity=0.403  Sum_probs=25.0

Q ss_pred             CCeeeecccccccc----ccccccc-CCeeecccchhcc
Q 020280           83 PEVFDCPICYESLT----APVFQCE-NGHIACSTCCSKI  116 (328)
Q Consensus        83 ~~~l~CpiC~~~l~----~Pv~~c~-CGH~fC~~C~~~~  116 (328)
                      +...-||-|..++.    .+..+|+ |++.||..|...|
T Consensus        23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w   61 (86)
T 2ct7_A           23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW   61 (86)
T ss_dssp             CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred             CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence            44445999988653    1223796 9999999999887

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=91.22  E-value=0.099  Score=46.71  Aligned_cols=44  Identities=30%  Similarity=0.508  Sum_probs=37.0

Q ss_pred             Ceeeeccccccccccccccc-CCeeecccchhcc-----CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLTAPVFQCE-NGHIACSTCCSKI-----MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~-CGH~fC~~C~~~~-----~~~CP~Cr~~~~  128 (328)
                      ....|.+|.+++..-+ .|+ |++.|=..|+.+|     ...||.|+....
T Consensus       179 ~i~~C~iC~~iv~~g~-~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSCE-ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCCc-ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            3677999999998766 786 9999999999987     248999998764

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=87.70  E-value=0.25  Score=34.32  Aligned_cols=37  Identities=27%  Similarity=0.744  Sum_probs=28.8

Q ss_pred             eecccccccccc-ccccc-CCeeecccchhcc---CCCCCCC
Q 020280           87 DCPICYESLTAP-VFQCE-NGHIACSTCCSKI---MNKCPSC  123 (328)
Q Consensus        87 ~CpiC~~~l~~P-v~~c~-CGH~fC~~C~~~~---~~~CP~C  123 (328)
                      .|-.|...+.+. +|+|+ |++.||.+|=.-+   ...||-|
T Consensus        17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC   58 (59)
T 1z60_A           17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence            599999988544 47897 9999999994332   3689988

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.29  E-value=0.24  Score=33.98  Aligned_cols=54  Identities=20%  Similarity=0.560  Sum_probs=39.1

Q ss_pred             eeecccCCCCCceEEeecccccccCCCCCCCccCCCCCCCccc-ccchHhhHhhhhcCCC
Q 020280          143 KVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIPDCNFVG-SANHLYKHFSAKHKNS  201 (328)
Q Consensus       143 ~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~gC~~~g-~~~~L~~Hl~~~H~~~  201 (328)
                      .+.|.    -|...+....|..|+..+.-.|+.|++ .|+... .+..|..|++..+...
T Consensus        10 ~~~C~----~C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A           10 TQPCT----YCTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             EEECS----SSCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSSSC
T ss_pred             Ceecc----ccCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhcccC
Confidence            46676    377776677788897668888899973 488764 5568999988766543

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=84.25  E-value=0.55  Score=35.39  Aligned_cols=46  Identities=26%  Similarity=0.681  Sum_probs=37.4

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIG  128 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~  128 (328)
                      .+=|.|..|...|....|.-..|.++|..|..+. ..+|..|.+++.
T Consensus        31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~   77 (101)
T 2cup_A           31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV   77 (101)
T ss_dssp             TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred             hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence            4568899999999765555568999999999876 578999988765

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=83.60  E-value=0.31  Score=38.14  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             CCccCCCCCCCcccccchHhhHhhhhcC
Q 020280          172 VPCSCPIPDCNFVGSANHLYKHFSAKHK  199 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g~~~~L~~Hl~~~H~  199 (328)
                      ..+.||+.||+|.+...+|..|++..+.
T Consensus        81 l~v~C~n~gC~~~~~~~~l~~H~~~c~~  108 (118)
T 3hct_A           81 LMVKCPNEGCLHKMELRHLEDHQAHCEF  108 (118)
T ss_dssp             SEEECSSTTCCCEEEGGGSGGGTSSSCC
T ss_pred             ceeECCCCCCCCEEeeHHHHHHHHHchh
Confidence            4578998999999999999999987554

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=83.48  E-value=0.72  Score=33.88  Aligned_cols=34  Identities=29%  Similarity=0.599  Sum_probs=26.8

Q ss_pred             CCeeeeccccccccccc-cccc--CCeeecccchhcc
Q 020280           83 PEVFDCPICYESLTAPV-FQCE--NGHIACSTCCSKI  116 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv-~~c~--CGH~fC~~C~~~~  116 (328)
                      ...|.|.+|.+-|.+-. .||+  -+|.||-.|-...
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s   49 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES   49 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence            34689999999998753 4887  6799999996554

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=82.70  E-value=2.6  Score=30.42  Aligned_cols=42  Identities=19%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             eeeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP  126 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~  126 (328)
                      .-.|..|..-+.-+-|.|.||.+||..=...-...|+..-+.
T Consensus        25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~   66 (74)
T 1wfp_A           25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG   66 (74)
T ss_dssp             CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred             CccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhH
Confidence            458999998765545699999999997766544578776443

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=81.81  E-value=1.6  Score=30.68  Aligned_cols=42  Identities=17%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             eeeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP  126 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~  126 (328)
                      .-.|..|..-+.-+.|+|.||.+||..-...-...|+..-+.
T Consensus        15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~   56 (64)
T 1wg2_A           15 NNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE   56 (64)
T ss_dssp             SCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred             CCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhH
Confidence            347999999765445699999999998766544678776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	8e-33
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-05
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	9e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	7e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.001
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.002

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (296), Expect = 8e-33
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 14/187 (7%)

Query: 141 SVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSAKH 198
           SV   C+ ++ GC++T+ + +K +HE++C   P SCP P   C + GS + +  H   +H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 199 KNSALHFLYNEVVEVTL--NVKNRFIVLQEEGDGVLFILSSRSETLGH-----VISVSCI 251
           K+       + V   T          V+ +   G  F+L    +            V  I
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120

Query: 252 AP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVDNP-PSTGFLLVP---IESFGSSGD 306
                     Y +        + +++  ++I   +     ++  L+      + F  +G+
Sbjct: 121 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 180

Query: 307 LKLELCI 313
           L + + I
Sbjct: 181 LGINVTI 187

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 88  CPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPI 127
           C  C      P       H  CS C      +CP C  P 
Sbjct: 9   CQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPW 47

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 88  CPICYESLTAPVFQCENGHIACSTCCSKIM---NKCPSCCTPI 127
           CPIC E  +         H  C  C ++ +     CP C  P+
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-05
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 84  EVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCC----TPIGYNRCRAIEKVL 139
           ++  C  C   L  PV      HI CS C S  +      C            R ++ ++
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMI 80

Query: 140 ESVK 143
           +   
Sbjct: 81  QLCS 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 88  CPICYESLTAPVFQCENGHIACSTCCSKIM----NKCPSCCTPI 127
           C IC E+          GH+ C++C +         CP C   I
Sbjct: 26  CKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 84  EVFDCPICYESLTAPVFQCENGHIACSTCCSKIMN------KCPSCCTPI 127
           ++ +CPIC E +  PV   +  HI C  C  K++N      +CP C   I
Sbjct: 20  KILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 86  FDCPICYESLTAPVFQCENGHIACSTCCSKIMN----KCPSCCTPI 127
             C IC   L  PV +    H+ C  C  + +      CPSC  P 
Sbjct: 24  ISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	99.96
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.07
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.02
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.01
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.01
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.96
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.92
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.85
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.76
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.69
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.65
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.59
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.45
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.08
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.92
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.9
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.75
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	91.58
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	91.42
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	90.62
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.53
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	88.38
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	87.7
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	87.16
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	86.87
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	86.22
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	84.01
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	82.85
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	82.4
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	82.09
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	80.94

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.7e-31  Score=229.80  Aligned_cols=175  Identities=21%  Similarity=0.335  Sum_probs=144.4

Q ss_pred             eeeeecccCCCCCceEEeecccccccCCCCCCCccCCCC--CCCcccccchHhhHhhhhcCCCceeEEeceEEEEEEe--
Q 020280          141 SVKVTCRNSNYGCKVTMSYGKKHDHEKICPHVPCSCPIP--DCNFVGSANHLYKHFSAKHKNSALHFLYNEVVEVTLN--  216 (328)
Q Consensus       141 ~l~v~C~n~~~GC~~~~~~~~~~~He~~C~~~~~~Cp~~--gC~~~g~~~~L~~Hl~~~H~~~~~~~~y~~~~~~~l~--  216 (328)
                      ++++||+|+.+||+++++|.++..||+.|+|+|+.||.+  +|+|.|...+|..|++..|++..+.+.++..+.....  
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINL   80 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEEEESSEEEEEECCTTC
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccccCccceEEeeecccc
Confidence            467999999999999999999999999999999888765  5999999999999999999988777777655543221  


Q ss_pred             cCCcEEEEEeccCceEEEEeecccccc----c-EEEEEeecC-CCCCCceEEEEEecCCCeEEEeeeeeeeccccC-CCC
Q 020280          217 VKNRFIVLQEEGDGVLFILSSRSETLG----H-VISVSCIAP-SCKGCLFYSIFAGPAGSTVRFQSFTKNIQNRVD-NPP  289 (328)
Q Consensus       217 ~~~~~~vl~~~~d~~lFll~~~~~~~g----~-~vsV~cIgp-~~a~~f~Yel~~~~~~~~l~~~s~~~~i~~~~~-~~~  289 (328)
                      ....+++++..++|.+|+|+.+....+    . +++|++||+ .+|.+|+|+|++.+++++|+|++.++++++... ..+
T Consensus        81 ~~~~~~v~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~~~  160 (190)
T d1k2fa_          81 PGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIM  160 (190)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHHHH
T ss_pred             ccceeEEEEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccccC
Confidence            123456677789999999998765432    2 467789997 457899999999999999999999999976544 345


Q ss_pred             CcCeEEEcCc---ccCCCCceEEEEEEEe
Q 020280          290 STGFLLVPIE---SFGSSGDLKLELCIRR  315 (328)
Q Consensus       290 ~~~fL~VP~~---ll~~~~~l~l~V~I~~  315 (328)
                      +.+||+||..   +|+++|+|+|+|+|+-
T Consensus       161 ~~d~lvi~~~~~~~F~~~g~L~l~v~I~~  189 (190)
T d1k2fa_         161 NSDCLVFDTSIAQLFAENGNLGINVTISM  189 (190)
T ss_dssp             TTCSEEEEHHHHHHHCBTTBEEEEEEEEE
T ss_pred             CCCEEEECHHHHhhcccCCcEEEEEEEEe
Confidence            6689999984   8889999999999974

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.7e-11  Score=83.48  Aligned_cols=47  Identities=23%  Similarity=0.475  Sum_probs=41.9

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhccCCCCCCCCcCCccc
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTPIGYN  130 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~~~~~  130 (328)
                      .+.|.|+||++.+.+|+ .++|||+||..|+.++...||.||.++...
T Consensus         4 ~~~l~C~IC~~~~~~p~-~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCS-CSTTSCCSBTTTCSSSSSSCSSCCSSSSCC
T ss_pred             cCCCCCcccCcccCCCE-EecCCCHHhHHHHHcCCCcCcCCCCcccCC
Confidence            34679999999999999 689999999999999988999999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.02  E-value=1.4e-11  Score=90.59  Aligned_cols=59  Identities=22%  Similarity=0.400  Sum_probs=49.1

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.|.||||+++|.+|| ++.|||+||..|+.+|    ...||.|+.++..   ..|..|.++|+++
T Consensus         6 P~~l~CpIc~~~m~dPV-~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~   71 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW   71 (78)
T ss_dssp             SSSSSCTTTSCCCSSEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred             CccCCCcCcCchhhCce-EccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHH
Confidence            56899999999999999 6899999999999987    2469999998764   3577777776543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.5e-11  Score=90.89  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc---ccccccceeeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY---NRCRAIEKVLESV  142 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~---~r~~~le~~l~~l  142 (328)
                      ++.|.||||+++|++|| .++|||+||..|+.++    ...||.|+.++..   ..|..|.++++.+
T Consensus         5 P~~l~CpIc~~l~~dPv-~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~   70 (80)
T d2c2la2           5 PDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAF   70 (80)
T ss_dssp             CSTTBCTTTCSBCSSEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred             CccccCcCcCchhhhhc-ccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHH
Confidence            67899999999999999 6899999999999987    3579999998763   3577777776654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.4e-11  Score=94.35  Aligned_cols=58  Identities=29%  Similarity=0.614  Sum_probs=46.2

Q ss_pred             CCeeeecccccccccccccccCCeeecccchhcc-CCCCCCCCcCCcc---ccccccceeee
Q 020280           83 PEVFDCPICYESLTAPVFQCENGHIACSTCCSKI-MNKCPSCCTPIGY---NRCRAIEKVLE  140 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~-~~~CP~Cr~~~~~---~r~~~le~~l~  140 (328)
                      .+.|.|+||+++|.+|+....|||+||..|+.+| ...||.|+.++..   ..|+.+++++.
T Consensus        20 ~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~   81 (97)
T d1jm7b_          20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQ   81 (97)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred             hhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHH
Confidence            3467899999999999954589999999999998 4579999987653   35666666554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3e-11  Score=93.56  Aligned_cols=63  Identities=30%  Similarity=0.772  Sum_probs=49.4

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc---C---CCCCCCCcCCcc---ccccccceeeeee-eeecc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI---M---NKCPSCCTPIGY---NRCRAIEKVLESV-KVTCR  147 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~---~~CP~Cr~~~~~---~r~~~le~~l~~l-~v~C~  147 (328)
                      +.|.||||++++.+|+ .++|||+||..|+.+|   .   ..||.||.++..   ..|..+.++++.+ ++.|+
T Consensus        20 ~~l~CpIC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~~~~   92 (103)
T d1jm7a_          20 KILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICA   92 (103)
T ss_dssp             HHTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHH
T ss_pred             cCcCCCccCchhCCeE-EcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHHHcc
Confidence            4588999999999999 6899999999999887   1   479999998753   3566666666655 35554

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.2e-10  Score=87.10  Aligned_cols=45  Identities=31%  Similarity=0.648  Sum_probs=39.7

Q ss_pred             CeeeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCcc
Q 020280           84 EVFDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGY  129 (328)
Q Consensus        84 ~~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~  129 (328)
                      +.+.|+||++++.+|+ .++|||+||..|+.+|    ..+||.||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcce-ecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            4578999999999999 6899999999999988    2579999998763

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=2.8e-10  Score=78.22  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             eeecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      |.|+||++++++||....|||+||..|+.+|   .+.||.|++++..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            5799999999999954469999999999999   4789999998763

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-09  Score=80.15  Aligned_cols=44  Identities=27%  Similarity=0.503  Sum_probs=38.4

Q ss_pred             eeecccccccccccccccCCeeecccchhcc----CCCCCCCCcCCccc
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKI----MNKCPSCCTPIGYN  130 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~~~  130 (328)
                      ..|+||++.+.+|+ ..+|||.||..|+.+|    .+.||.||..+...
T Consensus        24 ~~C~IC~~~~~~~~-~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBCCEE-CSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCCCeE-EeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            46999999999999 5789999999999988    25799999988643

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.76  E-value=1.5e-09  Score=77.39  Aligned_cols=43  Identities=28%  Similarity=0.639  Sum_probs=38.0

Q ss_pred             eecccccccccccccccCCeeecccchhcc---CCCCCCCCcCCcc
Q 020280           87 DCPICYESLTAPVFQCENGHIACSTCCSKI---MNKCPSCCTPIGY  129 (328)
Q Consensus        87 ~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~~  129 (328)
                      .|+||++.+.+|++..+|||.||..|+.+|   ...||.||.++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            699999999888766789999999999999   5799999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.4e-09  Score=72.24  Aligned_cols=43  Identities=35%  Similarity=0.916  Sum_probs=35.0

Q ss_pred             eeecccccccccc---cccccCCeeecccchhccC----CCCCCCCcCCc
Q 020280           86 FDCPICYESLTAP---VFQCENGHIACSTCCSKIM----NKCPSCCTPIG  128 (328)
Q Consensus        86 l~CpiC~~~l~~P---v~~c~CGH~fC~~C~~~~~----~~CP~Cr~~~~  128 (328)
                      ++||||++.+...   ++.+.|||.||..|+.+|.    .+||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            5799999988542   2356899999999999982    46999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.2e-09  Score=82.15  Aligned_cols=58  Identities=12%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             CCeeeecccccccccccccccC-Ceeecccchhcc---CCCCCCCCcCCcc---ccccccceeeee
Q 020280           83 PEVFDCPICYESLTAPVFQCEN-GHIACSTCCSKI---MNKCPSCCTPIGY---NRCRAIEKVLES  141 (328)
Q Consensus        83 ~~~l~CpiC~~~l~~Pv~~c~C-GH~fC~~C~~~~---~~~CP~Cr~~~~~---~r~~~le~~l~~  141 (328)
                      ++.|.||||+.+|.+|| +..| ||.||..||.+|   ...||.|+.++..   ..|.+|.++|..
T Consensus        20 P~~f~CPI~~~lm~dPV-~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~   84 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQR   84 (98)
T ss_dssp             CTTTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHH
T ss_pred             cHHhCCcCchhHHHHHH-hcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHH
Confidence            66899999999999999 5655 569999999998   4789999999863   356666666554

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.9e-09  Score=74.52  Aligned_cols=45  Identities=29%  Similarity=0.759  Sum_probs=35.4

Q ss_pred             Ceeeecccccccc-cc---cccccCCeeecccchhcc----CCCCCCCCcCCc
Q 020280           84 EVFDCPICYESLT-AP---VFQCENGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        84 ~~l~CpiC~~~l~-~P---v~~c~CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      +...||||++.+. +|   ++.++|||.||..|+.+|    ...||.||+++.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            4568999998653 22   335689999999999998    357999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.45  E-value=4.1e-08  Score=66.82  Aligned_cols=43  Identities=21%  Similarity=0.479  Sum_probs=35.1

Q ss_pred             eeeecccccccccc--cccc-cCCeeecccchhcc---CCCCCCCCcCC
Q 020280           85 VFDCPICYESLTAP--VFQC-ENGHIACSTCCSKI---MNKCPSCCTPI  127 (328)
Q Consensus        85 ~l~CpiC~~~l~~P--v~~c-~CGH~fC~~C~~~~---~~~CP~Cr~~~  127 (328)
                      ...|+||++.+.+.  +.+. .|||.||..|+.+|   ...||.||.++
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            45799999998753  3344 59999999999999   47899999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=7.4e-07  Score=69.22  Aligned_cols=45  Identities=31%  Similarity=0.465  Sum_probs=35.0

Q ss_pred             eeeecccccccccc-----------------cccccCCeeecccchhccC--------CCCCCCCcCCcc
Q 020280           85 VFDCPICYESLTAP-----------------VFQCENGHIACSTCCSKIM--------NKCPSCCTPIGY  129 (328)
Q Consensus        85 ~l~CpiC~~~l~~P-----------------v~~c~CGH~fC~~C~~~~~--------~~CP~Cr~~~~~  129 (328)
                      .-.|+||++.|..+                 +..+.|||.||..|+.+|.        ..||.||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            44799999988643                 2235799999999999982        269999987753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.6e-06  Score=64.38  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=34.5

Q ss_pred             eeeeccccccccccc-----------------ccccCCeeecccchhcc---CCCCCCCCcCCc
Q 020280           85 VFDCPICYESLTAPV-----------------FQCENGHIACSTCCSKI---MNKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv-----------------~~c~CGH~fC~~C~~~~---~~~CP~Cr~~~~  128 (328)
                      .-.|+||++.+..+-                 ....|||.|+..|+.+|   ...||+||.++.
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            345999988776532                 23469999999999999   478999999875

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.90  E-value=2.2e-06  Score=58.87  Aligned_cols=48  Identities=27%  Similarity=0.452  Sum_probs=37.1

Q ss_pred             CCCCeeeecccccccccccc-ccc---CCeeecccchhcc-----CCCCCCCCcCCc
Q 020280           81 TDPEVFDCPICYESLTAPVF-QCE---NGHIACSTCCSKI-----MNKCPSCCTPIG  128 (328)
Q Consensus        81 ~d~~~l~CpiC~~~l~~Pv~-~c~---CGH~fC~~C~~~~-----~~~CP~Cr~~~~  128 (328)
                      .|.+...|+||++.+..+.. .|.   |+|.|+..|+.+|     ...||.||.++.
T Consensus         2 eded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45667789999998776642 232   5699999999999     257999999865

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0002  Score=52.85  Aligned_cols=32  Identities=16%  Similarity=0.446  Sum_probs=24.0

Q ss_pred             eeeeccccccccc-cccc-ccCCeeecccchhcc
Q 020280           85 VFDCPICYESLTA-PVFQ-CENGHIACSTCCSKI  116 (328)
Q Consensus        85 ~l~CpiC~~~l~~-Pv~~-c~CGH~fC~~C~~~~  116 (328)
                      ...|+||++.+.. -++. ..|||.||..|+..+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~   38 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY   38 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHH
Confidence            4579999997753 1122 369999999999876

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.58  E-value=0.18  Score=34.93  Aligned_cols=42  Identities=19%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             eeeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP  126 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~  126 (328)
                      .-.|.+|..-+.-..|+|.||++||......-...|+..-+.
T Consensus        25 k~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK~   66 (74)
T d1wfpa_          25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKG   66 (74)
T ss_dssp             CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred             CCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcchh
Confidence            458999998776556799999999999887655677776443

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.045  Score=36.24  Aligned_cols=39  Identities=26%  Similarity=0.663  Sum_probs=30.3

Q ss_pred             eeeecccccccccc-ccccc-CCeeecccchhcc---CCCCCCC
Q 020280           85 VFDCPICYESLTAP-VFQCE-NGHIACSTCCSKI---MNKCPSC  123 (328)
Q Consensus        85 ~l~CpiC~~~l~~P-v~~c~-CGH~fC~~C~~~~---~~~CP~C  123 (328)
                      ...|--|...+.+. +|+|+ |++.||..|-.-+   ...||-|
T Consensus        15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            34799999888754 68897 9999999994333   3689987

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.62  E-value=0.088  Score=30.50  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             CCccCCCCCCCccc-ccchHhhHhhh
Q 020280          172 VPCSCPIPDCNFVG-SANHLYKHFSA  196 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~  196 (328)
                      +|+.|+.+||++.. ...+|..|++.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            57899999999888 45789999764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.069  Score=30.00  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             CCccCCCCCCCccc-ccchHhhHhhh
Q 020280          172 VPCSCPIPDCNFVG-SANHLYKHFSA  196 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~  196 (328)
                      +|+.|+.+||++.. ...+|..|++.
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            47899999999877 45788888764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.13  Score=29.46  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             CCccCCCCCCCccc-ccchHhhHhhh
Q 020280          172 VPCSCPIPDCNFVG-SANHLYKHFSA  196 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~  196 (328)
                      +|+.|++++|+... ....|..|++.
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc
Confidence            47899999999877 46789999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.70  E-value=0.13  Score=29.09  Aligned_cols=25  Identities=24%  Similarity=0.580  Sum_probs=19.7

Q ss_pred             CCccCCCCCCCccc-ccchHhhHhhh
Q 020280          172 VPCSCPIPDCNFVG-SANHLYKHFSA  196 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~  196 (328)
                      +|+.|+++||++.. ....|..|.+.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            47899999999887 45778888753

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=0.17  Score=28.72  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             CCccCCCCCCCccc-ccchHhhHhhh
Q 020280          172 VPCSCPIPDCNFVG-SANHLYKHFSA  196 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~  196 (328)
                      +|+.|+.+||+... ....|..|++.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc
Confidence            47899999999887 45788889764

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.87  E-value=0.58  Score=33.05  Aligned_cols=41  Identities=17%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             eeeeccccccccc--ccccccCCeeecccchhccCCCCCCCCcC
Q 020280           85 VFDCPICYESLTA--PVFQCENGHIACSTCCSKIMNKCPSCCTP  126 (328)
Q Consensus        85 ~l~CpiC~~~l~~--Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~  126 (328)
                      .-.|.+|..-+.-  + |+|.||+.||......-...|+..-+.
T Consensus        25 ~~RC~~C~KKl~l~~~-~~CrCg~~FC~~HR~pe~H~CtfDyK~   67 (85)
T d1wffa_          25 MKHCFLCGKKTGLATS-FECRCGNNFCASHRYAEAHGCNYDYKS   67 (85)
T ss_dssp             CCBCSSSCCBCSSSSC-EECTTCCEECTTTCSTGGGTCCSCCSS
T ss_pred             CCcChhcCCeecCCcC-eecCCCCEehhhcCCCcCcCCCcchHH
Confidence            3479999987753  4 499999999999887655678776443

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.18  Score=28.62  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             CCccCCCCCCCccc-ccchHhhHhhh
Q 020280          172 VPCSCPIPDCNFVG-SANHLYKHFSA  196 (328)
Q Consensus       172 ~~~~Cp~~gC~~~g-~~~~L~~Hl~~  196 (328)
                      +|+.|+.+||+... ....|..|++.
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccc
Confidence            47899999999877 56788999864

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.29  Score=33.55  Aligned_cols=35  Identities=20%  Similarity=0.457  Sum_probs=27.6

Q ss_pred             CCCeeeecccccccc----cccccc-cCCeeecccchhcc
Q 020280           82 DPEVFDCPICYESLT----APVFQC-ENGHIACSTCCSKI  116 (328)
Q Consensus        82 d~~~l~CpiC~~~l~----~Pv~~c-~CGH~fC~~C~~~~  116 (328)
                      ++...-||-|..++.    .+.++| .||+.||..|...|
T Consensus        15 ~~~~k~CP~C~~~~~~~~~~~~~~C~~C~~~fC~~C~~~w   54 (73)
T d2ct7a1          15 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW   54 (73)
T ss_dssp             CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred             CCCCCCCCCCCCEeEECCCCCEEEcCCCCCeECcccCcch
Confidence            566778999988664    244578 59999999999887

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.85  E-value=0.92  Score=31.10  Aligned_cols=41  Identities=20%  Similarity=0.443  Sum_probs=29.1

Q ss_pred             eeeecccccccccccccccCCeeecccchhccCCCCCCCCc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCT  125 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~  125 (328)
                      .-.|.+|..-+.---|+|.||.+||......-...|...-+
T Consensus        25 ~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfDyK   65 (74)
T d1wfla_          25 KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK   65 (74)
T ss_dssp             TTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGG
T ss_pred             CCcChhhCCcccceeeEccCCCEehhhcCCCcCcCCCCccc
Confidence            34899999755432258999999999887654456766543

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=82.40  E-value=0.19  Score=34.27  Aligned_cols=39  Identities=36%  Similarity=0.914  Sum_probs=30.0

Q ss_pred             eeeecccccccccccccccCCeeecccchhcc--CCCCCCCCcCCc
Q 020280           85 VFDCPICYESLTAPVFQCENGHIACSTCCSKI--MNKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~--~~~CP~Cr~~~~  128 (328)
                      .+.||.|...|..     ..|+..|..|-...  ...||.|..++.
T Consensus         2 ~~~CP~C~~eL~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~Le   42 (71)
T d2jnea1           2 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ   42 (71)
T ss_dssp             CCBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred             CCcCCCccCcccc-----cCCCEehhhhhhhheeEEeCCccccHHH
Confidence            3589999997653     24799999998776  357999988764

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.09  E-value=0.57  Score=31.28  Aligned_cols=41  Identities=17%  Similarity=0.403  Sum_probs=30.1

Q ss_pred             eeecccccccccccccccCCeeecccchhccCCCCCCCCcC
Q 020280           86 FDCPICYESLTAPVFQCENGHIACSTCCSKIMNKCPSCCTP  126 (328)
Q Consensus        86 l~CpiC~~~l~~Pv~~c~CGH~fC~~C~~~~~~~CP~Cr~~  126 (328)
                      -.|..|..-+.---|+|.||+.||......-...|+..-+.
T Consensus        16 ~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfDyK~   56 (64)
T d1wfha_          16 NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKS   56 (64)
T ss_dssp             CCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSC
T ss_pred             CcChhhCCCccceeeeccCCCEehhhcCCCcCcCCCCcchh
Confidence            47999998664322599999999998876545677776443

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.94  E-value=0.53  Score=33.18  Aligned_cols=44  Identities=27%  Similarity=0.588  Sum_probs=33.0

Q ss_pred             eeeecccccccc-----ccccccc-CCeeecccchhcc----CCCCCCCCcCCc
Q 020280           85 VFDCPICYESLT-----APVFQCE-NGHIACSTCCSKI----MNKCPSCCTPIG  128 (328)
Q Consensus        85 ~l~CpiC~~~l~-----~Pv~~c~-CGH~fC~~C~~~~----~~~CP~Cr~~~~  128 (328)
                      .-.|.||.+-.-     ++..-|. |+--+|+.|.+--    ...||.|+.++.
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            457999998653     3444564 9999999997643    478999998875