Citrus Sinensis ID: 020290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MGKTERFGFVHGGGGGASSSRFPKRRRSSRRDLDESEFFEEEEVPTVERQAPEQETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQHPRK
Secondary Structure (PSIPRED)
cccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEcccccccccccEEEcccccEEccccccccccccccccccccccccHHHHHHHcccEEEEEccccccEEEEcccccccccccccccccccccccccccccHHHHHcHHHHccccccEEEEEccEEEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEccccccccccccEEEEccccccccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEHcHHHcccccccccccccEEEcccccEEEcccHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccEEcccccHHHHHHccccccccccccccccccHHHHHHHHHHHcccccEEEEccccEEEEEccccEEEEEEEccccEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEccccEEEEEcccccHHHHHHHccccccEEEEccHHccccccEEEEEEEEEccc
Coil and Loop (DISEMBL)
mgkterfgfvhgggggasssrfpkrrrssrrdldeseffeeeevptverqapeqetratdsgggggggkgnrtgdllkhfnngpvtvtlndpevldcpvcyeplnipvyqcgnghvvchrcccdlmnkcpscrlpnghsrsTAMEKVIESIQVACENAdygckekmsysekydhgrachytpcscplaacnfvgSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLiilqeekngdlfilnnstepdgyrisvnciapsckggVVYSIVAKSggavyefnSCTKSIQnwdennppsvasllvpsdffgsygqlhlgvriqhprk
Flexible Loop (DISEMBL)
mgkterfgfvhgggggasssrfpkrrrssrrdldeseffeeeevptverqapeqetratdsggggggGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIIlqeekngdlFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLhlgvriqhprk
Low Complexity Region (SEG)
MGKTERFGFVHgggggAsssrfpkrrrssrrDLDeseffeeeeVPTVERQAPEQETRATDSgggggggkgNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQHPRK
Disordered region (IsUnstruct)
***************************************************************************LLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGH***TAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRI*****
Disordered Region (DISOPRED)
******F*FVH*****************************************************************************LNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYE******************VASLLVPSDFFGSYGQLHLGVRIQHPR*
Disordered Region (DISEMBL)
MGKTERFGFV**********************************************************KGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQHPRK
Disordered Region (DISPRO)
*GKTE***FVH*********************************************************KGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQHPRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKTERFGFVHGGGGGASSSRFPKRRRSSRRDLDESEFFEEEEVPTVERQAPEQETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQHPRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q84K34	349	E3 ubiquitin-protein liga	yes	no	0.731	0.687	0.411	3e-48
Q9FKD9	281	Putative E3 ubiquitin-pro	no	no	0.542	0.633	0.411	3e-40
Q9FKD7	286	E3 ubiquitin-protein liga	no	no	0.542	0.622	0.405	8e-39
Q9C9M0	329	E3 ubiquitin-protein liga	no	no	0.725	0.723	0.347	4e-38
Q9C6H3	313	E3 ubiquitin-protein liga	no	no	0.817	0.856	0.307	2e-35
Q9C6H2	303	E3 ubiquitin-protein liga	no	no	0.692	0.749	0.319	2e-33
Q9FM14	314	E3 ubiquitin-protein liga	no	no	0.560	0.585	0.376	7e-33
Q9FKD5	276	Putative E3 ubiquitin-pro	no	no	0.704	0.836	0.320	8e-33
Q7XA77	328	E3 ubiquitin-protein liga	no	no	0.533	0.533	0.381	2e-29
Q9FKD6	263	E3 ubiquitin-protein liga	no	no	0.512	0.638	0.335	3e-24

>sp|Q84K34|SIL10_ARATH E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 142/243 (58%), Gaps = 3/243 (1%)

Query: 87  VTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEK 146
           VTL DP+VLDCP+C EPL IP++QC NGH+ C  CC  + N+CPSC LP G+ R  AMEK
Sbjct: 103 VTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEK 162

Query: 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGV 206
           VIE+ +V+C NA YGCKE  SY  ++ H + C +TPCSCP+  C++ G +  +  H R  
Sbjct: 163 VIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAE 222

Query: 207 HKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKG 266
           HK     FV++  L I+L ++    ILQEE +G + ++          +SV+CIAP   G
Sbjct: 223 HKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFRALHAVYVSVSCIAPLTPG 282

Query: 267 -GVVYSIVAK-SGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQ 324
            G +   +AK +  ++ +     K+IQ    N  P    +L+PS  F     L+L + I 
Sbjct: 283 VGRLSCRLAKITVDSLLKQGFMVKNIQKV-TNEHPEDGFMLIPSYLFSGNDNLNLQIWIG 341

Query: 325 HPR 327
           H R
Sbjct: 342 HGR 344

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9FKD9|SINL6_ARATH Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 86  TVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAME 145
           +  L D ++LDCP+CY+ L IPV+QCGNGH+ C  CC  L NKCP+C LP GH R  AME
Sbjct: 34  SAMLTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAME 93

Query: 146 KVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRG 205
           +V+ES+ V C  AD GC + + Y  +  H + C+++PCSCP+  CN+ GS+  +Y+H+  
Sbjct: 94  RVLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDL 153

Query: 206 VHKHAAEEFVYDKVLRIT--LSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPS 263
            H   +  + ++ V  I   + +   ++I +  +   LF++    EP G  +SV+CIAPS
Sbjct: 154 THSTGSTAYSFNGVSYIAAMMFISDKILIERVYEKKLLFVVQCFEEPCGVYVSVSCIAPS 213

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD7|SINL7_ARATH E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana GN=At5g37890 PE=2 SV=1

 Score =  161 bits (407), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 107/180 (59%), Gaps = 2/180 (1%)

Query: 86  TVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAME 145
           +  L D E+LDCP+CYE   IP++QC NGH+ C  CC  L NKCP+C  P GH+R  AME
Sbjct: 40  STMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAME 99

Query: 146 KVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRG 205
            V+ESI + C NA  GCK+ +SY ++  H + C ++ C+CP   CN+  S+  +Y H+R 
Sbjct: 100 SVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNYTSSYKDLYTHYRI 159

Query: 206 VHKHAAE--EFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPS 263
            H    +   F+ D  L + +++   ++I  E     LF +    EP G  ++V+CIAPS
Sbjct: 160 THMEINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAVQCFREPYGVYVTVSCIAPS 219

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 21/259 (8%)

Query: 14  GGGASSSRFPKRRRSSRRDLDESEFFEEEEVPTVERQAPEQETRATDSGGGGGGGKGNRT 73
           GGG S     KR+R +   +D+    EEEE           +T    +            
Sbjct: 10  GGGKSHRSSTKRQRRTSVSVDDPSPGEEEE-----------KTLVVLTDDSDSEEDDKPL 58

Query: 74  GDLL----KHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKC 129
           GD+L    K   + P +VTL +  VL+CP C++PL  P++QC NGH+ C  CC  L  +C
Sbjct: 59  GDVLRTCRKRRVSSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRC 118

Query: 130 PSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYD-HGRACHYTPCSCPLA 188
             C+LP G  R  AMEKVI++  V+C NA YGCK+  +Y  +   H + C + PCSCP+ 
Sbjct: 119 SFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIK 178

Query: 189 ACNFVGSFHQIYQHFRGVHKHA---AEEFVYDK--VLRITLSVHHDLIILQEEKNGDLFI 243
            CN++G +  +  HFR  HK +      FV+D+  +  + L     ++I  EEK G+LF+
Sbjct: 179 DCNYIGFYKDLINHFRATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFV 238

Query: 244 LNNSTEPDGYRISVNCIAP 262
           +       G   +V+ IAP
Sbjct: 239 VQGFIGSHGVYATVSHIAP 257

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C6H3|SINL2_ARATH E3 ubiquitin-protein ligase SINA-like 2 OS=Arabidopsis thaliana GN=At1g66620 PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 21/289 (7%)

Query: 46  TVERQAPEQETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLN 105
           +  R+  ++   + +S   GGG    R+G             TL + ++LDCP+C   L 
Sbjct: 6   STSRRKRQRVPSSVESVENGGGDAVARSG-------------TLFELDLLDCPICCHALT 52

Query: 106 IPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEK 165
            P++QC NGH+ C  CC  L NKCPSC LP G+ RS  ME+V+E++ V C N  +GC EK
Sbjct: 53  SPIFQCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERVVEAVMVTCPNVKHGCTEK 112

Query: 166 MSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLS 225
            SY ++  H + C +  C CP   CN+ G +  +Y HF   H     +          L 
Sbjct: 113 FSYGKELIHEKDCRFALCYCPAPNCNYSGVYKDLYSHFYVNHYDTWNQIGCGNFAGAWLR 172

Query: 226 VHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGV------VYSIVAKSGGA 279
           +   +++LQ  + G L  +    E  G  ++VNCIAP C  GV      +   +   G +
Sbjct: 173 ISEKILVLQYGQ-GPLIAVQCFKETQGMYVTVNCIAP-CAPGVGELSFELSYKMPMGGNS 230

Query: 280 VYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQHPRK 328
              F S   +         P    +LVP  F G +  L + + I+  +K
Sbjct: 231 TMMFKSEEMNRIQKVSFQTPEKDFMLVPYYFLGDFSTLKMEICIRKLKK 279

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C6H2|SINL3_ARATH E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana GN=At1g66630 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 20/247 (8%)

Query: 46  TVERQAPEQETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLN 105
           +++R   ++     + GG   G +  R+  LL             + ++LDCP+CY  L 
Sbjct: 11  SLDRPKRQRPVSMENVGGTASGSEVARSATLL-------------ELDLLDCPICYHKLG 57

Query: 106 IPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEK 165
            P+YQC NGH+ C  CC  +  KCP C L  G  RS  +EK++E++ V+C NA YGC EK
Sbjct: 58  APIYQCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTEK 117

Query: 166 MSYSEKYD--HGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFV---YDKVL 220
           + Y  + +  H R C +T C CP   C + G +  +Y+H+   HK     F    Y+   
Sbjct: 118 IPYDNESESAHERVCEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSWFKCGEYNNAW 177

Query: 221 RITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYS--IVAKSGG 278
                     ++LQE ++G L ++  S E  G  ++VNCIAP   G   +S  ++ ++G 
Sbjct: 178 LHVTGEKLSFLVLQEYEDGPLVVVQCSMESHGICVTVNCIAPCAPGVGEFSCHLIYRNGS 237

Query: 279 AVYEFNS 285
               F S
Sbjct: 238 EKITFES 244

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FM14|SIL11_ARATH E3 ubiquitin-protein ligase SINA-like 11 OS=Arabidopsis thaliana GN=At5g62800 PE=2 SV=2

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 7/191 (3%)

Query: 78  KHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPS--CRLP 135
           +   N   +  L D +VLDCPVC+EPL IP +QC +GH+VC+ C   + NKCP   C LP
Sbjct: 24  QRMENETRSAKLLDLDVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLP 83

Query: 136 NGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGS 195
            G+ R  AME+V+ES  V C+N ++GC + +SY +   H + C+Y+ CSCP   CN+ GS
Sbjct: 84  IGNKRCFAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCPNLECNYTGS 143

Query: 196 FHQIYQHFRGVHKH----AAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPD 251
           ++ IY HF   H +     + ++ Y  V  + +++   + +L E +   LF++    E  
Sbjct: 144 YNIIYGHFMRRHLYNSTIVSSKWGYSTV-DVLINIKEKVSVLWESRQKLLFVVQCFKERH 202

Query: 252 GYRISVNCIAP 262
           G  ++V  IAP
Sbjct: 203 GVYVTVRRIAP 213

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD5|SINL9_ARATH Putative E3 ubiquitin-protein ligase SINA-like 9 OS=Arabidopsis thaliana GN=At5g37910 PE=3 SV=1

 Score =  141 bits (355), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 22/253 (8%)

Query: 56  TRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGH 115
           + A  S G GG     R              + L D ++LDCP+C E L  P++QC NGH
Sbjct: 7   SEALISQGDGGERVAKRQRS----------AIVLLDLDILDCPICCEALTSPIFQCDNGH 56

Query: 116 VVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHG 175
           + C  CC  L NKCP+C LP GHSRS AME V+ESI + C N  +GC +   Y ++  H 
Sbjct: 57  LACGSCCPKLSNKCPACTLPVGHSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAHE 116

Query: 176 RACHYTPCSCPLAACNFVGSFHQIYQHFRGVHK----HAAEEFVYDKVLRITLSVHHDLI 231
           + C ++ CSCP + C++ GS+  +Y H++  H        + F        ++ +   ++
Sbjct: 117 KECIFSQCSCPSSVCDYTGSYKDLYAHYKLTHSTNIFWNIKRFRCANFFTTSMLISDKIL 176

Query: 232 ILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCK--GGVVYSIVAKSGGAVYEFNS---- 285
           I +  +   L  +    EP G  ++V+ IAPS    G   Y +     G    + S    
Sbjct: 177 IKRVHEKKLLLAVQCFREPCGVYVTVSFIAPSAPEVGEFSYQLSYNVDGHTVTYESPEVK 236

Query: 286 --CTKSIQNWDEN 296
             C  SI+   EN
Sbjct: 237 RVCKVSIETPQEN 249

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XA77|SINL5_ARATH E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana GN=At1g66660 PE=2 SV=2

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 96/181 (53%), Gaps = 6/181 (3%)

Query: 87  VTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEK 146
           V L   +VLDCP C EPL  P+YQC NGH+ C  CC  L  KC  CR   G  R  AMEK
Sbjct: 76  VKLQSSDVLDCPTCCEPLKRPIYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEK 135

Query: 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGV 206
           VIE+  V C NA +GCKE  +Y  +  H + C +  CSCP++ CN+V S+  +  H    
Sbjct: 136 VIEASIVPCPNAKHGCKETTTYCNQSSHEKVCKFVRCSCPVSNCNYVSSYSNLKSHACST 195

Query: 207 HKHAAE-----EFVYDKVLRITLSV-HHDLIILQEEKNGDLFILNNSTEPDGYRISVNCI 260
                E     + V D+     +++     ++ +EEK GDL ++      +G  ++VN I
Sbjct: 196 AHVWGEDDIHFQLVIDRPRIFNMNLGRKKTVVFKEEKEGDLIVVQAFKGLEGVYVTVNRI 255

Query: 261 A 261
           A
Sbjct: 256 A 256

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FKD6|SINL8_ARATH E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana GN=At5g37900 PE=1 SV=2

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 14/182 (7%)

Query: 86  TVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAME 145
           + TL D ++LDCP+C E L  P++QC NGH+ C  CC  L NKCP+C           ME
Sbjct: 24  SATLLDLDILDCPICCEGLTCPIFQCENGHLACSSCCPKLRNKCPAC----------PME 73

Query: 146 KVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRG 205
            ++ESI V C N  +GC E   Y +K  H   C ++ CSCP   C + G +  +Y H++ 
Sbjct: 74  NILESILVTCPNDMFGCTESFLYGKKSTHEEECIFSLCSCPSLDCEYSGRYEDLYDHYKL 133

Query: 206 VH----KHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIA 261
            H          F      +  + +   + I +  +   LF +    E  G  ++V+CIA
Sbjct: 134 THISNSYWTTNCFRSSIPYKAPMLISDKIQITRVYEKKILFAVQCFRESCGVYVTVSCIA 193

Query: 262 PS 263
           PS
Sbjct: 194 PS 195

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
255583779	374	ubiquitin-protein ligase, putative [Rici	0.768	0.673	0.482	4e-64
224135291	372	predicted protein [Populus trichocarpa]	0.734	0.647	0.477	3e-59
388496832	281	unknown [Lotus japonicus]	0.844	0.985	0.413	1e-54
356512131	320	PREDICTED: E3 ubiquitin-protein ligase S	0.820	0.840	0.409	5e-54
356524904	320	PREDICTED: E3 ubiquitin-protein ligase S	0.826	0.846	0.387	9e-54
255647862	320	unknown [Glycine max]	0.826	0.846	0.387	2e-53
358348167	327	E3 ubiquitin-protein ligase SINA-like pr	0.832	0.834	0.375	3e-52
225453102	355	PREDICTED: E3 ubiquitin-protein ligase S	0.771	0.712	0.410	7e-52
147816090	355	hypothetical protein VITISV_037121 [Viti	0.771	0.712	0.406	5e-51
449526479	269	PREDICTED: E3 ubiquitin-protein ligase S	0.801	0.977	0.416	3e-50

>gi|255583779|ref|XP_002532642.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527633|gb|EEF29745.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 167/253 (66%), Gaps = 1/253 (0%)

Query: 72  RTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPS 131
           R+ + +    N  + VTL DPEVLDCP+CYE L+IPV+QC NGH  C  CC  L +KCPS
Sbjct: 97  RSSNPVGTARNAAICVTLTDPEVLDCPICYECLSIPVFQCENGHTACSSCCRKLAHKCPS 156

Query: 132 CRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACN 191
           C LP G++R  A+EKV+ES+++ C N  YGCKE +SYS+K DH + C+  PCSCPL+ C+
Sbjct: 157 CSLPIGYNRCRAIEKVLESVKLPCHNLKYGCKEMVSYSKKLDHDKICNNAPCSCPLSGCS 216

Query: 192 FVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPD 251
           FVGS  Q+YQHF   HK +A  F Y+    +  +++   +ILQEEK G +F L N+ E  
Sbjct: 217 FVGSSRQLYQHFSIKHKGSAAPFRYNITFPVFFTLNDKSLILQEEKEGVVFFLKNTAEIL 276

Query: 252 GYRISVNCI-APSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDF 310
           G  I+VNC+  PS KGG  Y + A+  G+  +F S TK+IQ  + ++P S   L++P  F
Sbjct: 277 GNVITVNCLGGPSSKGGYFYELAARMEGSNLKFQSFTKNIQKVNHDDPHSDTFLIIPGSF 336

Query: 311 FGSYGQLHLGVRI 323
           FGSYGQ+ L + I
Sbjct: 337 FGSYGQISLDLCI 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135291|ref|XP_002327611.1| predicted protein [Populus trichocarpa] gi|222836165|gb|EEE74586.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 160/243 (65%), Gaps = 2/243 (0%)

Query: 82  NGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRS 141
           NG +  TL+DPEVLDCP+C EPL IPV+QC NGH  C  CC  L +KCPSC +P G++R 
Sbjct: 111 NGVIYATLSDPEVLDCPICCEPLTIPVFQCDNGHTACSSCCIKLQHKCPSCTMPIGYNRC 170

Query: 142 TAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQ 201
            A+EKV+ES++V+C N+ YGCKE + YS+KY+H ++C + PC+CPL ACN+ GS  ++YQ
Sbjct: 171 RAIEKVLESLKVSCSNSSYGCKESICYSKKYEHDKSCTHAPCTCPLPACNYQGSSKRLYQ 230

Query: 202 HFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIA 261
           H R  H      F ++    +   V H   +LQEEK   LFIL N +E  G  I+V+C+ 
Sbjct: 231 HCRIKHLCDLTSFQFNTSFPLFFMVDHKFRVLQEEKEDVLFILTNRSECLGNVITVSCMG 290

Query: 262 P-SCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLG 320
           P S K G  Y + AK+ G+   F S T++IQ    ++PPS+  LLVP+DF G++G + L 
Sbjct: 291 PSSSKQGYFYELTAKAEGSNVRFQSSTRNIQT-RVDHPPSLGFLLVPNDFLGTHGGITLD 349

Query: 321 VRI 323
           V I
Sbjct: 350 VCI 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496832|gb|AFK36482.1| unknown [Lotus japonicus]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/283 (41%), Positives = 158/283 (55%), Gaps = 6/283 (2%)

Query: 42  EEVPTVERQAPEQETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCY 101
           EE P +   A  QE    + G G        +G          V V + DP+VLDC +CY
Sbjct: 2   EEDPEI---ATTQEVDHNNDGNGEAEDSNGVSGYSAARERERSVPVIITDPDVLDCCICY 58

Query: 102 EPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYG 161
           EPL++PV+QC NGHV C  CC  L NKCP C +P G++R  AMEK++ESI+++C NA YG
Sbjct: 59  EPLSVPVFQCENGHVACSSCCARLRNKCPMCLMPIGYNRCRAMEKLLESIKISCLNAKYG 118

Query: 162 CKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLR 221
           CKE  SYS K DH + C Y P  CP   C+FV S  ++  H    H  +  +F YDK + 
Sbjct: 119 CKEVFSYSMKSDHAKECVYIPILCPHTDCDFVASSKELSLHVSHRHVGSGVQFTYDKFIT 178

Query: 222 ITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVY 281
           + L+     I+LQE+ +  LFI++N  E  G  + ++CI P    G  Y I+A+S G+  
Sbjct: 179 VFLNTDQKEIVLQEQNDAHLFIVHNKLELLGNTVHISCIGPKSMAGFHYDILARSRGSTL 238

Query: 282 EFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQ 324
              S TK IQ     +  S   LL+PS FFG  GQL L +RI+
Sbjct: 239 ILQSVTKIIQAI--GHASSSVFLLIPSKFFGC-GQLKLDIRIK 278

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512131|ref|XP_003524774.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Glycine max]

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 162/283 (57%), Gaps = 14/283 (4%)

Query: 45  PTVERQAPEQETRAT---DSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCY 101
           P++  Q  EQE  A    D       G G  + D         V + ++DP+VLDC +CY
Sbjct: 46  PSIGTQ--EQEDHAAPPHDGSNSNANGAGTSSRD-------RSVPIFVSDPDVLDCCICY 96

Query: 102 EPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYG 161
           EPL  PV+QC NGH+ C  CC  L NKCP C +P G++R  A+EKV+E I+++C NA+YG
Sbjct: 97  EPLAAPVFQCENGHIACSTCCVRLSNKCPMCLMPIGYNRCRAIEKVLECIKMSCPNANYG 156

Query: 162 CKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLR 221
           CKE  SYS K +H + C Y PCSCPL  C+FV S  +++ HF   H      F YDK   
Sbjct: 157 CKETFSYSRKNNHEKECIYLPCSCPLTGCDFVASSKELFLHFSHRHVGMGTRFAYDKFFT 216

Query: 222 ITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVY 281
           + LS++   I+LQE+ +G+LFI++N+ E  G  + ++CI P       Y ++A+  G   
Sbjct: 217 VFLSINQRTIVLQEKNDGNLFIVHNNHEHLGNIVRISCIGPKSMAEFQYEVLARHQGNAL 276

Query: 282 EFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQ 324
              S TK +Q    + P S   LL+PS  FGS  QL L +RI+
Sbjct: 277 ILQSFTKIVQGQYADAPSSTF-LLIPSCLFGS-PQLKLDIRIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524904|ref|XP_003531068.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Glycine max]

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 164/281 (58%), Gaps = 10/281 (3%)

Query: 45  PTVERQAPEQETRATDSGGGGGG-GKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEP 103
           P++  Q  E     ++ G    G G G  T D         V + ++DP+VLDC +CYEP
Sbjct: 46  PSIGTQENEDHAAPSNDGSNSNGNGAGTSTRD-------RSVPIFVSDPDVLDCCICYEP 98

Query: 104 LNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCK 163
           L  PV+QC NGH+ C  CC  L NKCP C +P G++R  A+EKV+E I+++C NA+YGCK
Sbjct: 99  LTSPVFQCENGHIACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCK 158

Query: 164 EKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRIT 223
           E +SYS+K +H + C Y PCSCP   C+F+ S  +++ HF   H  +  +F YDK   + 
Sbjct: 159 ETLSYSKKNEHEKECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVF 218

Query: 224 LSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEF 283
           LS++   ++L+E+ +G+LF+++N+ E  G  + ++CI P       Y ++A+  G     
Sbjct: 219 LSINQRTVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALIL 278

Query: 284 NSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQ 324
            S TK +Q     + PS   LL+PS  FGS   L L +RI+
Sbjct: 279 QSFTKIVQG-QYTDAPSSTFLLIPSCLFGS-PHLKLDIRIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647862|gb|ACU24390.1| unknown [Glycine max]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/281 (38%), Positives = 164/281 (58%), Gaps = 10/281 (3%)

Query: 45  PTVERQAPEQETRATDSGGGGGG-GKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEP 103
           P++  Q  E     ++ G    G G G  T D         V + ++DP+VLDC +CYEP
Sbjct: 46  PSIGTQENEDHAAPSNDGSNSNGNGAGTSTRD-------RSVPIFVSDPDVLDCCICYEP 98

Query: 104 LNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCK 163
           L  PV+QC NGH+ C  CC  L NKCP C +P G++R  A+EKV+E I+++C NA+YGCK
Sbjct: 99  LTSPVFQCENGHIACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCK 158

Query: 164 EKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRIT 223
           E +SYS+K +H + C Y PCSCP   C+F+ S  +++ HF   H  +  +F YDK   + 
Sbjct: 159 ETLSYSKKNEHEKECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVF 218

Query: 224 LSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEF 283
           LS++   ++L+E+ +G+LF+++N+ E  G  + ++CI P       Y ++A+  G     
Sbjct: 219 LSINQRTVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALIL 278

Query: 284 NSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQ 324
            S TK +Q    + P S   LL+PS  FGS   L L +RI+
Sbjct: 279 QSFTKIVQGQYTDAPFSTF-LLIPSCLFGS-PHLKLDIRIK 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348167|ref|XP_003638120.1| E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula] gi|355504055|gb|AES85258.1| E3 ubiquitin-protein ligase SINA-like protein [Medicago truncatula]

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/290 (37%), Positives = 166/290 (57%), Gaps = 17/290 (5%)

Query: 37  EFFEEEEVP--TVERQAPEQETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEV 94
           E FE E  P  T+E  A E+ +         G   G +  DL K      V+  ++DP+V
Sbjct: 51  EGFEMENPPIETLENDANERNSV--------GSNAGQQNNDLSKK-----VSAIISDPDV 97

Query: 95  LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVA 154
           LDC +C EPL +P+YQC NGH+ C +CC +L NKCP C +P G++R  A+EK++ESI+++
Sbjct: 98  LDCFICSEPLAVPIYQCENGHIACSKCCGELRNKCPMCSMPIGYNRCRAVEKLLESIKIS 157

Query: 155 CENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEF 214
           C NA YGCK+  S S K  H + C Y PC CP   C F+ S  ++  HF   H     +F
Sbjct: 158 CPNAKYGCKDMFSCSMKSSHEKECIYIPCKCPHTGCGFLASSKELALHFSHRHAGFGIQF 217

Query: 215 VYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGGVVYSIVA 274
            YDK + ++L+     I+L ++ +  LFI++N     G  + ++C+ P       Y ++A
Sbjct: 218 TYDKFISVSLNTRQKQIVLLDQNDARLFIVHNHIVQHGNMVHISCMGPKAITDTHYDVLA 277

Query: 275 KSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHLGVRIQ 324
           +S G+     S TK+IQ+ +  + P+   L++PSD FG +GQL L +RI+
Sbjct: 278 RSQGSTLILQSSTKTIQD-NNGDAPTAGFLVIPSDHFG-FGQLKLDIRIK 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453102|ref|XP_002271757.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Vitis vinifera]

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/263 (41%), Positives = 155/263 (58%), Gaps = 10/263 (3%)

Query: 63  GGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCC 122
           G   G + NR         +  V+V L DPEVLDC +C EPL++PV+QC NGH+ C  CC
Sbjct: 89  GTSSGSEANR---------DASVSVILTDPEVLDCSICLEPLSVPVFQCENGHIACSSCC 139

Query: 123 CDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTP 182
             L N+CPSC  P G++R  A+EKV+ES++V+C+N  YGCKE +SY +K+DH   C+Y P
Sbjct: 140 TKLSNRCPSCSWPIGYNRCRAIEKVLESVKVSCQNTAYGCKETVSYGKKHDHEVTCNYVP 199

Query: 183 CSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHH-DLIILQEEKNGDL 241
           CSCP + CNF GS  Q+ QHFR  H ++   F Y+    + L  +  D   + E K G L
Sbjct: 200 CSCPHSNCNFRGSSKQLAQHFRSKHLNSVIRFQYNSFFPVHLEFNAVDKFCILEAKEGAL 259

Query: 242 FILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSV 301
           FI+++S +  G+ ++V  I P    G  +++ A  G       S T++I+   E    S+
Sbjct: 260 FIVSSSIQQLGHAVTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTENIREVVELPSLSM 319

Query: 302 ASLLVPSDFFGSYGQLHLGVRIQ 324
             LL+P+ F GS GQL L + I+
Sbjct: 320 GFLLIPNAFLGSSGQLKLELCIR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816090|emb|CAN77431.1| hypothetical protein VITISV_037121 [Vitis vinifera]

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 153/263 (58%), Gaps = 10/263 (3%)

Query: 63  GGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCC 122
           G   G + NR         +  V+V L DPEVLDC +C EPL++PV+QC NGH+ C  CC
Sbjct: 89  GTSSGSEANR---------DASVSVILTDPEVLDCSICLEPLSVPVFQCENGHIACSSCC 139

Query: 123 CDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTP 182
             L N+CPSC  P G++R  A+EKV+ES++V+C+N  YGCKE +SY +K DH   C+Y P
Sbjct: 140 TKLSNRCPSCSWPIGYNRCRAIEKVLESVKVSCQNTAYGCKETVSYXKKXDHEVTCNYVP 199

Query: 183 CSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHH-DLIILQEEKNGDL 241
           CSCP + CNF GS  Q+ QHFR  H ++   F Y+    + L  +  D   + E K G L
Sbjct: 200 CSCPHSNCNFRGSSKQLAQHFRSKHLNSVIRFQYNSFFPVHLEFNAVDKFCILEAKEGAL 259

Query: 242 FILNNSTEPDGYRISVNCIAPSCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSV 301
           FI+++S +  G+ ++V  I P    G  +++ A  G       S T++I+        S+
Sbjct: 260 FIVSSSIQQLGHAVTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTENIREVVXLPSLSM 319

Query: 302 ASLLVPSDFFGSYGQLHLGVRIQ 324
             LL+P+ F GS GQL L + I+
Sbjct: 320 GFLLIPNAFLGSSGQLKLELCIR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526479|ref|XP_004170241.1| PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Cucumis sativus]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 157/271 (57%), Gaps = 8/271 (2%)

Query: 54  QETRATDSGGGGGGGKGNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGN 113
           +++R++D      GG   R+  + +   NG + V   DP++LDC +C EPL+IPV+QC N
Sbjct: 2   EDSRSSD------GGSERRSSVISRRGTNGTLNVIFTDPQILDCYICCEPLSIPVFQCEN 55

Query: 114 GHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYD 173
           GH+ C  CC    NKCPSC L  G+ R  A+EKV+ESI++ C+NA YGCK  M  +   D
Sbjct: 56  GHIACSSCCTKAQNKCPSCTLAIGYIRCRAIEKVLESIKLPCQNAIYGCKTVMGLNLIND 115

Query: 174 HGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSVHHDLIIL 233
           H   C Y PCSCPL  C FVGS  Q+  HF   HK++A+ F Y+    I L+      IL
Sbjct: 116 HESLCRYEPCSCPLDNCTFVGSTEQLGLHFTKKHKNSAKIFSYNTRFTICLNNGDTHRIL 175

Query: 234 QEEKNGDLFILNNSTEPDGYRISVNCIAP-SCKGGVVYSIVAKSGGAVYEFNSCTKSIQN 292
           + E +G LF L+ + E  G  +++N I P S +    Y I AK+ G+V    S  K IQ 
Sbjct: 176 KAENDGVLFFLSYTFEIFGNAVTMNRIGPLSSEKKFCYEIKAKTLGSVLSLQSIAKEIQG 235

Query: 293 WDENNPPSVASLLVPSDFFGSYGQLHLGVRI 323
             +  PPS  SLL+P+++FGS  Q  L + I
Sbjct: 236 LIK-VPPSKGSLLIPNEYFGSSTQTMLEICI 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2153784	349	AT5G37930 [Arabidopsis thalian	0.746	0.702	0.407	2.5e-49
TAIR|locus:2153804	281	AT5G37870 [Arabidopsis thalian	0.530	0.619	0.432	4.6e-41
TAIR|locus:2153754	286	AT5G37890 [Arabidopsis thalian	0.533	0.611	0.412	5.3e-40
TAIR|locus:2033369	329	AT1G66650 [Arabidopsis thalian	0.576	0.574	0.386	1.1e-37
TAIR|locus:2195175	313	AT1G66620 [Arabidopsis thalian	0.725	0.760	0.342	1e-36
TAIR|locus:2195180	303	AT1G66630 [Arabidopsis thalian	0.609	0.660	0.362	2.1e-36
TAIR|locus:2153774	276	AT5G37910 [Arabidopsis thalian	0.640	0.760	0.337	2.8e-34
TAIR|locus:2033354	348	AT1G66660 [Arabidopsis thalian	0.667	0.629	0.342	1.4e-32
TAIR|locus:2076810	326	AT3G61790 [Arabidopsis thalian	0.375	0.377	0.377	1e-22
TAIR|locus:2137395	327	AT4G27880 [Arabidopsis thalian	0.371	0.373	0.393	2.6e-22

TAIR|locus:2153784 AT5G37930 [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 101/248 (40%), Positives = 146/248 (58%)

Query:    82 NGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRS 141
             + P++VTL DP+VLDCP+C EPL IP++QC NGH+ C  CC  + N+CPSC LP G+ R 
Sbjct:    98 DSPLSVTLLDPDVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRC 157

Query:   142 TAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQ 201
              AMEKVIE+ +V+C NA YGCKE  SY  ++ H + C +TPCSCP+  C++ G +  +  
Sbjct:   158 RAMEKVIEASRVSCLNAKYGCKESTSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNN 217

Query:   202 HFRGVHKHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIA 261
             H R  HK     FV++  L I+L ++    ILQEE +G + ++          +SV+CIA
Sbjct:   218 HVRAEHKDDLISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVFRALHAVYVSVSCIA 277

Query:   262 PSCKG-GVVYSIVAK-SGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGSYGQLHL 319
             P   G G +   +AK +  ++ +     K+IQ    N  P    +L+PS  F     L+L
Sbjct:   278 PLTPGVGRLSCRLAKITVDSLLKQGFMVKNIQKVT-NEHPEDGFMLIPSYLFSGNDNLNL 336

Query:   320 GVRIQHPR 327
              + I H R
Sbjct:   337 QIWIGHGR 344

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153804 AT5G37870 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 77/178 (43%), Positives = 112/178 (62%)

Query:    89 LNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVI 148
             L D ++LDCP+CY+ L IPV+QCGNGH+ C  CC  L NKCP+C LP GH R  AME+V+
Sbjct:    37 LTDLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVL 96

Query:   149 ESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHK 208
             ES+ V C  AD GC + + Y  +  H + C+++PCSCP+  CN+ GS+  +Y+H+   H 
Sbjct:    97 ESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDLTHS 156

Query:   209 HAAEEFVYDKVLRITLSVH-HDLIILQE--EKNGDLFILNNSTEPDGYRISVNCIAPS 263
               +  + ++ V  I   +   D I+++   EK   LF++    EP G  +SV+CIAPS
Sbjct:   157 TGSTAYSFNGVSYIAAMMFISDKILIERVYEKKL-LFVVQCFEEPCGVYVSVSCIAPS 213

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153754 AT5G37890 [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 73/177 (41%), Positives = 106/177 (59%)

Query:    89 LNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVI 148
             L D E+LDCP+CYE   IP++QC NGH+ C  CC  L NKCP+C  P GH+R  AME V+
Sbjct:    43 LMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESVL 102

Query:   149 ESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHK 208
             ESI + C NA  GCK+ +SY ++  H + C ++ C+CP   CN+  S+  +Y H+R  H 
Sbjct:   103 ESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNYTSSYKDLYTHYRITHM 162

Query:   209 HAAE--EFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPS 263
                +   F+ D  L + +++   ++I  E     LF +    EP G  ++V+CIAPS
Sbjct:   163 EINQINTFICDIPLSVRMNISKKILIRTEHLTNHLFAVQCFREPYGVYVTVSCIAPS 219

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2033369 AT1G66650 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 77/199 (38%), Positives = 115/199 (57%)

Query:    74 GDLL----KHFNNGPVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKC 129
             GD+L    K   + P +VTL +  VL+CP C++PL  P++QC NGH+ C  CC  L  +C
Sbjct:    59 GDVLRTCRKRRVSSPKSVTLPNSNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRC 118

Query:   130 PSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYD-HGRACHYTPCSCPLA 188
               C+LP G  R  AMEKVI++  V+C NA YGCK+  +Y  +   H + C + PCSCP+ 
Sbjct:   119 SFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCPIK 178

Query:   189 ACNFVGSFHQIYQHFRGVHKHAAEE---FVYDK--VLRITLSVHHDLIILQEEKNGDLFI 243
              CN++G +  +  HFR  HK +  +   FV+D+  +  + L     ++I  EEK G+LF+
Sbjct:   179 DCNYIGFYKDLINHFRATHKVSPGDINSFVFDRPVIFGLDLDSSDKMVIFVEEKQGNLFV 238

Query:   244 LNNSTEPDGYRISVNCIAP 262
             +       G   +V+ IAP
Sbjct:   239 VQGFIGSHGVYATVSHIAP 257

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195175 AT1G66620 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 85/248 (34%), Positives = 124/248 (50%)

Query:    88 TLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKV 147
             TL + ++LDCP+C   L  P++QC NGH+ C  CC  L NKCPSC LP G+ RS  ME+V
Sbjct:    35 TLFELDLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSCALPIGNFRSRIMERV 94

Query:   148 IESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVH 207
             +E++ V C N  +GC EK SY ++  H + C +  C CP   CN+ G +  +Y HF   H
Sbjct:    95 VEAVMVTCPNVKHGCTEKFSYGKELIHEKDCRFALCYCPAPNCNYSGVYKDLYSHFYVNH 154

Query:   208 KHAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKGG 267
                  +          L +   +++LQ  + G L  +    E  G  ++VNCIAP C  G
Sbjct:   155 YDTWNQIGCGNFAGAWLRISEKILVLQYGQ-GPLIAVQCFKETQGMYVTVNCIAP-CAPG 212

Query:   268 V---VYSIVAK---SGGAVYEFNSCTKS-IQNWDENNPPSVASLLVPSDFFGSYGQLHLG 320
             V    + +  K    G +   F S   + IQ      P     +LVP  F G +  L + 
Sbjct:   213 VGELSFELSYKMPMGGNSTMMFKSEEMNRIQKVSFQTPEK-DFMLVPYYFLGDFSTLKME 271

Query:   321 VRIQHPRK 328
             + I+  +K
Sbjct:   272 ICIRKLKK 279

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2195180 AT1G66630 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 75/207 (36%), Positives = 113/207 (54%)

Query:    86 TVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAME 145
             + TL + ++LDCP+CY  L  P+YQC NGH+ C  CC  +  KCP C L  G  RS  +E
Sbjct:    38 SATLLELDLLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYKCPYCSLRIGFFRSRILE 97

Query:   146 KVIESIQVACENADYGCKEKMSYSEKYD--HGRACHYTPCSCPLAACNFVGSFHQIYQHF 203
             K++E++ V+C NA YGC EK+ Y  + +  H R C +T C CP   C + G +  +Y+H+
Sbjct:    98 KIVEAVVVSCPNAKYGCTEKIPYDNESESAHERVCEFTLCYCPEPECKYTGVYTDLYRHY 157

Query:   204 RGVHKHAAEEFVYDKVLRITLSVHHD---LIILQEEKNGDLFILNNSTEPDGYRISVNCI 260
                HK     F   +     L V  +    ++LQE ++G L ++  S E  G  ++VNCI
Sbjct:   158 HAEHKTDHSWFKCGEYNNAWLHVTGEKLSFLVLQEYEDGPLVVVQCSMESHGICVTVNCI 217

Query:   261 APSCKGGVVYS--IVAKSGGAVYEFNS 285
             AP   G   +S  ++ ++G     F S
Sbjct:   218 APCAPGVGEFSCHLIYRNGSEKITFES 244

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2153774 AT5G37910 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 75/222 (33%), Positives = 114/222 (51%)

Query:    87 VTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEK 146
             + L D ++LDCP+C E L  P++QC NGH+ C  CC  L NKCP+C LP GHSRS AME 
Sbjct:    28 IVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPACTLPVGHSRSRAMES 87

Query:   147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGV 206
             V+ESI + C N  +GC +   Y ++  H + C ++ CSCP + C++ GS+  +Y H++  
Sbjct:    88 VLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSSVCDYTGSYKDLYAHYKLT 147

Query:   207 HKHAA----EEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAP 262
             H        + F        ++ +   ++I +  +   L  +    EP G  ++V+ IAP
Sbjct:   148 HSTNIFWNIKRFRCANFFTTSMLISDKILIKRVHEKKLLLAVQCFREPCGVYVTVSFIAP 207

Query:   263 SCK--GGVVYSIVAKSGGAVYEFNS------CTKSIQNWDEN 296
             S    G   Y +     G    + S      C  SI+   EN
Sbjct:   208 SAPEVGEFSYQLSYNVDGHTVTYESPEVKRVCKVSIETPQEN 249

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2033354 AT1G66660 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 77/225 (34%), Positives = 109/225 (48%)

Query:    48 ERQAPEQETRATDSXXXXXXXXXNRTGDLLKHFNNGPVTVTLNDPEVLDCPVCYEPLNIP 107
             E +  E+E    +          N T D           V L   +VLDCP C EPL  P
Sbjct:    57 EEEFEEEEEELEEEEDEEEEEEENVTTDEQSGSPKSSQPVKLQSSDVLDCPTCCEPLKRP 116

Query:   108 VYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKMS 167
             +YQC NGH+ C  CC  L  KC  CR   G  R  AMEKVIE+  V C NA +GCKE  +
Sbjct:   117 IYQCSNGHLACSSCCQKLNKKCSFCRCNIGDIRCRAMEKVIEASIVPCPNAKHGCKETTT 176

Query:   168 YSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGV-HKHAAEEFVYDKVL---RI- 222
             Y  +  H + C +  CSCP++ CN+V S+  +  H     H    ++  +  V+   RI 
Sbjct:   177 YCNQSSHEKVCKFVRCSCPVSNCNYVSSYSNLKSHACSTAHVWGEDDIHFQLVIDRPRIF 236

Query:   223 TLSV-HHDLIILQEEKNGDLFILNNSTEPDGYRISVNCIAPSCKG 266
              +++     ++ +EEK GDL ++      +G  ++VN IA    G
Sbjct:   237 NMNLGRKKTVVFKEEKEGDLIVVQAFKGLEGVYVTVNRIAHMAPG 281

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2076810 AT3G61790 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 48/127 (37%), Positives = 70/127 (55%)

Query:    84 PVTVTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTA 143
             P T +++  E+L+CPVC   +  P++QC NGH +C  C   + N+CP+CR   G  R  A
Sbjct:    52 PTTTSVH--ELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLA 109

Query:   144 MEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAA--CNFVGSFHQIYQ 201
             +EKV ES+++ C++   GC E   Y  K  H   C++ P SCP A   C+  G    +  
Sbjct:   110 LEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVA 169

Query:   202 HFRGVHK 208
             H R  HK
Sbjct:   170 HLRDDHK 176

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2137395 AT4G27880 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/127 (39%), Positives = 68/127 (53%)

Query:    93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQ 152
             E+L+CPVC   +  P++QC NGH +C  C   + N+CP+CR   G  R  A+EKV ES++
Sbjct:    60 ELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLE 119

Query:   153 VACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAA--CNFVGSFHQIYQHFRGVHK-- 208
             + C+  + GC E   Y  K  H   C++ P SCP A   C  VG    +  H R  HK  
Sbjct:   120 LPCKFYNLGCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVD 179

Query:   209 -HAAEEF 214
              HA   F
Sbjct:   180 MHAGSTF 186

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0007275 "multicellular organismal development" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440259 hypothetical protein (372 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
pfam03145	198	pfam03145, Sina, Seven in absentia protein family	2e-12
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	6e-06

>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 139 SRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPL--AACNFVGSF 196
            R+ A+EKV   +   C++A  GC  ++    K  H   C Y P  CP+  A C + G  
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 197 HQIYQHFRGVHK 208
             +  H    HK
Sbjct: 61  DDLMPHLTADHK 72

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 95  LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLM---NKCPSCR 133
           L+CP+C + L  PV     GHV C  C    +   +KCP CR
Sbjct: 3   LECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG3002	299	consensus Zn finger protein [General function pred	100.0
PF03145	198	Sina: Seven in absentia protein family; InterPro:	99.96
cd03829	127	Sina Seven in absentia (Sina) protein family, C-te	99.42
KOG0297	391	consensus TNF receptor-associated factor [Signal t	99.31
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.54
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.49
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.47
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.44
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.38
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.31
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.26
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.26
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.18
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.14
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.04
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	97.96
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.92
PF14634	44	zf-RING_5: zinc-RING finger domain	97.89
PHA02929	238	N1R/p28-like protein; Provisional	97.83
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.79
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.65
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.62
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.55
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.49
PHA02926	242	zinc finger-like protein; Provisional	97.45
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.33
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.33
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.27
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.11
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	97.0
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.99
PLN03086	567	PRLI-interacting factor K; Provisional	96.68
PLN03086	567	PRLI-interacting factor K; Provisional	96.5
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.4
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.25
COG5152	259	Uncharacterized conserved protein, contains RING a	96.14
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.01
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.54
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.19
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.13
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	95.11
KOG2660	331	consensus Locus-specific chromosome binding protei	95.11
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.78
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.63
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.6
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	93.95
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.82
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	93.8
KOG4739	233	consensus Uncharacterized protein involved in syna	93.58
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.51
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.36
KOG1002	791	consensus Nucleotide excision repair protein RAD16	92.96
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	92.29
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	91.84
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	91.44
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	91.22
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	89.36
KOG4367	699	consensus Predicted Zn-finger protein [Function un	89.3
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	89.24
PF04641	260	Rtf2: Rtf2 RING-finger	88.69
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	88.24
KOG3039	303	consensus Uncharacterized conserved protein [Funct	87.85
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.07
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	85.83
KOG0825	1134	consensus PHD Zn-finger protein [General function	85.42
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	85.08
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	84.65
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	83.37
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	83.27
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	83.07
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	82.93
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	82.45
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	82.27
PF10083	158	DUF2321: Uncharacterized protein conserved in bact	81.84
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	81.62

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=100.00  E-value=1.7e-41  Score=317.96  Aligned_cols=227  Identities=37%  Similarity=0.735  Sum_probs=194.9

Q ss_pred             eecCCCCeeeeccccccccccccccccccEecccccccccCCCCCCCcCCCCCcchhhHHhhhceeeecccCCCCCCccc
Q 020290           87 VTLNDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPNGHSRSTAMEKVIESIQVACENADYGCKEKM  166 (328)
Q Consensus        87 ~~~~~~~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~~~~r~~~le~~l~~l~v~C~~~~~GC~~~~  166 (328)
                      ++..+.++|.||||++.+.+||+||.|||+.|++|..++..+||.|+.+++.+|+++||++++++.|+|+|+.+||++.+
T Consensus        41 ~~~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~  120 (299)
T KOG3002|consen   41 VTLLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSF  120 (299)
T ss_pred             ccccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceee
Confidence            44557789999999999999999999999999999988889999999999999999999999999999999999999999


Q ss_pred             ccchhhhcccccccCCCCCCCC--CCccccccchHhhhhhhccCCCceE-----EEeCcEEEEEEecCC---CEEEEEEe
Q 020290          167 SYSEKYDHGRACHYTPCSCPLA--ACNFVGSFHQIYQHFRGVHKHAAEE-----FVYDKVLRITLSVHH---DLIILQEE  236 (328)
Q Consensus       167 ~~~~~~~He~~C~~~~~~CP~~--gC~~~g~~~~L~~Hl~~~H~~~~~~-----f~y~~~~~l~l~~~~---~~~vl~~~  236 (328)
                      +|.+...||+.|.|+++.||.+  .|+|.|..++|..|+...|+..+++     |.|.......+....   ...+..+.
T Consensus       121 ~Y~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (299)
T KOG3002|consen  121 PYGEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGR  200 (299)
T ss_pred             ccccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcE
Confidence            9999999999999999999998  8999999999999999999998763     344332222233221   23345556


Q ss_pred             cCCcEEEEecccCCCccEEEEEccCCC--CCCCeeEEEEEeeCCceEEEeeeecccccccCCCCCCcceeEecCCccCC
Q 020290          237 KNGDLFILNNSTEPDGYRISVNCIAPS--CKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSDFFGS  313 (328)
Q Consensus       237 ~d~~lFll~~~~~~~g~~vsV~cIgp~--~a~~f~Y~l~~~~~g~~L~~~s~~~si~~~~~~~~~~~~fL~VP~~l~~~  313 (328)
                      ..+.+|+++...++.|.+++|++|.|.  ++++|+|+|.+.+.+++|+|++.++++.+......|..+||+||.+++..
T Consensus       201 ~~~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~  279 (299)
T KOG3002|consen  201 EFGLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCL  279 (299)
T ss_pred             EEeeeeeehhhcCCCceEEEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhc
Confidence            677899999999999999999999984  47899999999999999999999988665222367889999999886644

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila

Probab=99.96  E-value=8.5e-30  Score=227.98  Aligned_cols=184  Identities=30%  Similarity=0.544  Sum_probs=116.1

Q ss_pred             CcchhhHHhhhceeeecccCCCCCCcccccchhhhcccccccCCCCCCC--CCCccccccchHhhhhhhccCCCceEEEe
Q 020290          139 SRSTAMEKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPL--AACNFVGSFHQIYQHFRGVHKHAAEEFVY  216 (328)
Q Consensus       139 ~r~~~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~--~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y  216 (328)
                      +||++||++++++++||+|+.+||++.++|.++..||++|+|+|+.||.  .+|+|.|+.++|..|+...|.|.+....+
T Consensus         1 iR~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~   80 (198)
T PF03145_consen    1 IRNRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHLRDKHSWNVTDNGT   80 (198)
T ss_dssp             --------------EE-CCGGGT---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHHHHHTTTSEEEESS
T ss_pred             CCcHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHHHHHCCCccccCcc
Confidence            4899999999999999999999999999999999999999999999999  79999999999999999999998765332


Q ss_pred             Cc-EEEEEEecC---CCEEEEEEecCCcEEEEecc-cCCCcc--EE-EEEccCC-CCCCCeeEEEEEeeCCceEEEeeee
Q 020290          217 DK-VLRITLSVH---HDLIILQEEKNGDLFILNNS-TEPDGY--RI-SVNCIAP-SCKGGVVYSIVAKSGGAVYEFNSCT  287 (328)
Q Consensus       217 ~~-~~~l~l~~~---~~~~vl~~~~d~~lFll~~~-~~~~g~--~v-sV~cIgp-~~a~~f~Y~l~~~~~g~~L~~~s~~  287 (328)
                      .. .|.......   ..|++++...++.+|+|+.. .+..|.  ++ .|++||| .++++|+|+|++.+++++|+||++|
T Consensus        81 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~F~l~~~~~~~~~~~v~~~~v~~~G~~~~a~~f~Yel~~~~~~rkl~~~~~p  160 (198)
T PF03145_consen   81 FSISFLHSDINSVESPDWVLVQFSCFGKLFLLYVQKFELEGNAVYFAVVCYIGPAEEASNFSYELEVRSNGRKLTWQSFP  160 (198)
T ss_dssp             -EEEEEECTTT-SSSEEEEEEE-EETTEEEEEEEEEEEEETEEEEEEEEEESS-HHHHTTEEEEEEEEETTEEEEEEE--
T ss_pred             ceEEEeeecccccCCceEEEeecccCCccEEEEEEEEccCCceEEEEEEEEccCchhhhceEEEEEEecCCcEEEEEEcC
Confidence            11 121111111   25666663567899999853 332344  33 4667788 4678999999999999999999999


Q ss_pred             cccccccCCCCCCcceeEecC---CccCCCCceEEEEE
Q 020290          288 KSIQNWDENNPPSVASLLVPS---DFFGSYGQLHLGVR  322 (328)
Q Consensus       288 ~si~~~~~~~~~~~~fL~VP~---~l~~~~g~l~l~V~  322 (328)
                      +++++.......+.++|++..   .+|.++|.|.++|+
T Consensus       161 ~si~~~~~~~~~~~d~li~~~~~~~~f~~~~~L~~~v~  198 (198)
T PF03145_consen  161 RSIREDIDDAIESRDCLIINENAAQFFSEDGNLRYRVT  198 (198)
T ss_dssp             EETTT-SHHHHHCT-SEEEEHHHHHHHECTTEEEEEEE
T ss_pred             cchhhhHHhhccCCcEEEEchHHHHhcCCCCeEEEEeC
Confidence            999873222234456777764   47788899998886

The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.

>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins

Probab=99.42  E-value=9.7e-14  Score=112.42  Aligned_cols=97  Identities=18%  Similarity=0.243  Sum_probs=78.5

Q ss_pred             CCEEEEEEecCCcEEEEeccc-CC-Ccc---EEEEEccCC-CCCCCeeEEEEEeeCCceEEEeeeecccccccCCCCCCc
Q 020290          228 HDLIILQEEKNGDLFILNNST-EP-DGY---RISVNCIAP-SCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSV  301 (328)
Q Consensus       228 ~~~~vl~~~~d~~lFll~~~~-~~-~g~---~vsV~cIgp-~~a~~f~Y~l~~~~~g~~L~~~s~~~si~~~~~~~~~~~  301 (328)
                      .+|++++.+.+ +.|+|+..+ +. .+.   ++.|+.||+ ++|.+|+|+|++.+++|+|+||++|+||++.......+.
T Consensus        22 ~~w~mv~sCfG-~~F~L~~Ek~~l~~~~~~y~A~~~~iG~~~eA~nf~Y~Lel~~n~RkL~we~~PRSIrds~~~~~~~~  100 (127)
T cd03829          22 TDWVMMQSCFG-HHFMLVLEKQELYEGHQQFFAFVQLIGTEKQAENFTYRLELNGNRRRLTWEATPRSIREGHASVIDNS  100 (127)
T ss_pred             eeeeehhhhcC-ceEEEEEehhhhcCCcHHHHHHHHHHcCHhHHhcceEEEEEcCCCcEEEeecCCccHHHhhHHHhhcC
Confidence            37888887655 666666544 33 333   367899998 578999999999999999999999999998655557888


Q ss_pred             ceeEecC---CccCCCCceEEEEEEec
Q 020290          302 ASLLVPS---DFFGSYGQLHLGVRIQH  325 (328)
Q Consensus       302 ~fL~VP~---~l~~~~g~l~l~V~I~~  325 (328)
                      ++|++..   .||+++|++.|+|+|+.
T Consensus       101 D~Lii~~~~A~~Fs~~g~l~l~v~It~  127 (127)
T cd03829         101 DCLVFDTSIAQLFSENGNLGINVTISG  127 (127)
T ss_pred             cceEEechHhhhccCCCccEEEEEecC
Confidence            9999984   58889999999999973

Sina, Siah and SINAT5 are RING-containing proteins that function as E3 ubiquitin ligases, acting either as single proteins or as a part of multiprotein complexes. Sina is expressed in many cells in the developing eye but is essential specifically for R7 photoreceptor cell development. Sina cooperates with Phyllopod (Phyl), Ebi and the E2 ubiquitin-conjugating enzyme Ubcd1 to catalyze the ubiquitination and subsequent degradation of Tramtrack (Ttk88); Ttk88 is a transcriptional repressor that blocks photoreceptor differentiation. Similarly, the mammalian homologue Siah1 cooperates with SIP (Siah-interacting protein), Ebi and the adaptor protein Skp1, to target beta-catenin for ubiquitination and degradation via a p53-dependent mechanism. SINAT5 targets NAC1 for ubiquitin-medi

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=99.31  E-value=1.6e-12  Score=127.58  Aligned_cols=116  Identities=26%  Similarity=0.581  Sum_probs=101.7

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCCC----cchhhHHhhhceeeecccCCCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGHS----RSTAMEKVIESIQVACENADYGCK  163 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~~----r~~~le~~l~~l~v~C~~~~~GC~  163 (328)
                      +++.|++|..++.+|+.  +|  ||.||..|+..+   ...||.|+..+...    ....+.+++.++.+.|.++..||.
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~c--gh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC~   97 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTC--GHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGCR   97 (391)
T ss_pred             ccccCccccccccCCCCCCCC--CCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCcc
Confidence            46999999999999998  89  999999999986   36899998887542    245778999999999999999999


Q ss_pred             cccccchhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCCCceE
Q 020290          164 EKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEE  213 (328)
Q Consensus       164 ~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~  213 (328)
                      |.+.+..++.|+..|  .+++||+ +|+..+.++++..|+...+......
T Consensus        98 ~~~~l~~~~~Hl~~c--~~~~C~~-~C~~~~~~~d~~~hl~~~C~~~~~~  144 (391)
T KOG0297|consen   98 ADLELEALQGHLSTC--DPLKCPH-RCGVQVPRDDLEDHLEAECPRRSLK  144 (391)
T ss_pred             ccccHHHHHhHhccC--CcccCcc-ccccccchHHHHHHHhccccccccc
Confidence            999999999999999  8999996 4999999999999998777665443

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.54  E-value=2e-08  Score=67.51  Aligned_cols=34  Identities=41%  Similarity=1.122  Sum_probs=27.2

Q ss_pred             ecccccccccccc-ccccccEeccccccccc-------CCCCCC
Q 020290           97 CPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM-------NKCPSC  132 (328)
Q Consensus        97 CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~-------~~CP~C  132 (328)
                      ||||+++|++||. .|  ||+||..|+.++.       ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~C--GH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPC--GHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SS--SSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCC--cCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999998 99  9999999999862       257776

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.49  E-value=4.9e-08  Score=86.17  Aligned_cols=46  Identities=30%  Similarity=0.802  Sum_probs=38.8

Q ss_pred             CCCeeeecccccccccccc-ccccccEeccccccccc-------------------CCCCCCCcCCCC
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM-------------------NKCPSCRLPNGH  138 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~-------------------~~CP~C~~~~~~  138 (328)
                      ..+.+.|+||++.+++|+. .|  ||+||..|+.+|.                   ..||.|+..+..
T Consensus        15 ~~~~~~CpICld~~~dPVvT~C--GH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLC--GHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCC--CchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            4456899999999999988 89  9999999998751                   379999988753

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.47  E-value=7.3e-08  Score=69.88  Aligned_cols=52  Identities=29%  Similarity=0.830  Sum_probs=28.3

Q ss_pred             eeeecccccccccccc--ccccccEeccccccc-ccCCCCCCCcCCCC---CcchhhHHh
Q 020290           94 VLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCD-LMNKCPSCRLPNGH---SRSTAMEKV  147 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~-~~~~CP~C~~~~~~---~r~~~le~~  147 (328)
                      .|.|++|..+|+.||.  .|  .|+||+.|+.. +...||+|..+...   ..|+.+..+
T Consensus         7 lLrCs~C~~~l~~pv~l~~C--eH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~   64 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGC--EHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSM   64 (65)
T ss_dssp             TTS-SSS-S--SS-B---SS--S--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccC--ccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhcc
Confidence            5789999999999985  89  99999999987 35679999988632   346666554

>smart00504 Ubox Modified RING finger domain

Probab=98.44  E-value=1e-07  Score=69.11  Aligned_cols=54  Identities=22%  Similarity=0.345  Sum_probs=44.8

Q ss_pred             eeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhc
Q 020290           95 LDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIES  150 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~  150 (328)
                      |.||||.+++.+|+. .|  ||+||..|+.++   ...||.|++++..   ..+..+++.++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~--G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        2 FLCPISLEVMKDPVILPS--GQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             cCCcCCCCcCCCCEECCC--CCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            689999999999988 88  999999999986   3689999998853   456777766653

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.5e-07  Score=83.26  Aligned_cols=45  Identities=31%  Similarity=0.842  Sum_probs=39.4

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc------cCCCCCCCcCCC
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL------MNKCPSCRLPNG  137 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~------~~~CP~C~~~~~  137 (328)
                      +-..|.|.||++..++||. .|  ||+||..|+.+|      ...||+|+..++
T Consensus        44 ~~~~FdCNICLd~akdPVvTlC--GHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLC--GHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCCEEeec--ccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            3446999999999999999 89  999999999998      257999998775

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.5e-07  Score=79.99  Aligned_cols=42  Identities=43%  Similarity=1.078  Sum_probs=35.3

Q ss_pred             eeeeccccccccc--ccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNI--PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~--Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      .+.||||++.+..  |+. .|  ||+||+.|++..   ..+||+|++.++
T Consensus       131 ~~~CPiCl~~~sek~~vsTkC--GHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKC--GHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             ccCCCceecchhhcccccccc--chhHHHHHHHHHHHhCCCCCCcccccc
Confidence            5899999999865  453 89  999999999985   479999998665

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.26  E-value=2.5e-07  Score=61.04  Aligned_cols=34  Identities=44%  Similarity=1.169  Sum_probs=27.8

Q ss_pred             eccccccccccc-c-ccccccEecccccccc---cCCCCCC
Q 020290           97 CPVCYEPLNIPV-Y-QCGNGHVVCHRCCCDL---MNKCPSC  132 (328)
Q Consensus        97 CpiC~~~l~~Pv-~-qC~~GH~~C~~C~~~~---~~~CP~C  132 (328)
                      |+||++.+.+|+ . .|  ||+||..|+.++   ..+||.|
T Consensus         1 C~iC~~~~~~~~~~~~C--GH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPC--GHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTT--SEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCC--CCchhHHHHHHHHHCcCCCcCC
Confidence            899999999994 4 89  999999999986   3678876

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.26  E-value=3.3e-07  Score=89.75  Aligned_cols=57  Identities=28%  Similarity=0.717  Sum_probs=46.5

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhce
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESI  151 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l  151 (328)
                      +.+.|+||.+++..|+. .|  ||.||..|+..+   ...||.|+..+..   .+|..|+++++.+
T Consensus        25 ~~l~C~IC~d~~~~PvitpC--gH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~   88 (397)
T TIGR00599        25 TSLRCHICKDFFDVPVLTSC--SHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESF   88 (397)
T ss_pred             cccCCCcCchhhhCccCCCC--CCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHH
Confidence            46899999999999988 89  999999999875   2579999998753   4577777666644

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.18  E-value=4.4e-07  Score=63.18  Aligned_cols=42  Identities=40%  Similarity=0.980  Sum_probs=35.5

Q ss_pred             eeeecccccccccccc-ccccccE-ecccccccc---cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      ...|+||++...++++ .|  ||. ||..|+.++   ...||.||+++.
T Consensus         2 ~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPC--GHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETT--CEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCC--CChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4579999999999887 99  999 999999997   379999998875

...

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.14  E-value=1.8e-07  Score=88.08  Aligned_cols=58  Identities=26%  Similarity=0.808  Sum_probs=46.5

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhce
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESI  151 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l  151 (328)
                      -+.|.|.||+++|+.|+. .|  ||.||+-||.+.   ...||.|..++..   ..|+.++.++.++
T Consensus        21 D~lLRC~IC~eyf~ip~itpC--sHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~   85 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPC--SHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSL   85 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccc--cchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHH
Confidence            357899999999999988 99  999999999985   4789999988763   3355666666554

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.04  E-value=1.4e-06  Score=65.64  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=43.6

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC---CcchhhHHhhhce
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH---SRSTAMEKVIESI  151 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~---~r~~~le~~l~~l  151 (328)
                      |+.|.|||+..+|.+||. .+  ||+|+..|+.++.    ..||.|++++..   .+|..|++.+..+
T Consensus         2 P~~f~CpIt~~lM~dPVi~~~--G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~   67 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVILPS--GHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEW   67 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEETT--SEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCceeCCc--CCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHH
Confidence            578999999999999998 78  9999999999872    579999988863   5778888777654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=97.96  E-value=2.1e-06  Score=61.76  Aligned_cols=52  Identities=27%  Similarity=0.454  Sum_probs=38.6

Q ss_pred             hceeeecccCCCCCCcccccchhhhccc-ccccCCCCCCC--CCCccccccchHhhh
Q 020290          149 ESIQVACENADYGCKEKMSYSEKYDHGR-ACHYTPCSCPL--AACNFVGSFHQIYQH  202 (328)
Q Consensus       149 ~~l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~~~~CP~--~gC~~~g~~~~L~~H  202 (328)
                      ....|.|+|  .+|...+...++.+|++ .|+++++.||+  .||++.+.+.+|..|
T Consensus         6 ~~~~v~C~~--~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H   60 (60)
T PF02176_consen    6 PFRPVPCPN--GCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH   60 (60)
T ss_dssp             TTSEEE-TT----S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred             CCCEeeCCC--CCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence            345799997  46678899999999998 99999999998  699999999999988

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.92  E-value=3.3e-06  Score=55.98  Aligned_cols=34  Identities=47%  Similarity=1.229  Sum_probs=29.5

Q ss_pred             eccccccccccc-c-ccccccEecccccccc-----cCCCCCC
Q 020290           97 CPVCYEPLNIPV-Y-QCGNGHVVCHRCCCDL-----MNKCPSC  132 (328)
Q Consensus        97 CpiC~~~l~~Pv-~-qC~~GH~~C~~C~~~~-----~~~CP~C  132 (328)
                      |+||++++..|+ . .|  ||.||..|+.++     ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C--~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPC--GHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTT--SEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecC--CCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999998 4 99  999999999986     2468876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.89  E-value=2.6e-06  Score=57.74  Aligned_cols=37  Identities=41%  Similarity=1.098  Sum_probs=30.6

Q ss_pred             eeccccccc---ccccc-ccccccEeccccccccc---CCCCCCCc
Q 020290           96 DCPVCYEPL---NIPVY-QCGNGHVVCHRCCCDLM---NKCPSCRL  134 (328)
Q Consensus        96 ~CpiC~~~l---~~Pv~-qC~~GH~~C~~C~~~~~---~~CP~C~~  134 (328)
                      .|++|++.+   ..|++ .|  ||+||..|+.++.   ..||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~C--gH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSC--GHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEccc--CCHHHHHHHHhhcCCCCCCcCCCC
Confidence            499999999   23444 99  9999999999874   68999974

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.83  E-value=5.3e-06  Score=76.14  Aligned_cols=44  Identities=32%  Similarity=0.735  Sum_probs=35.5

Q ss_pred             Ceeeecccccccccc--------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIP--------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~P--------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +...|+||++.+..+        +. .|  ||.||..|+.+|   ...||.||.++..
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C--~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNC--NHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCC--CCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            357899999987643        33 68  999999999987   3689999998753

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.79  E-value=5e-06  Score=56.15  Aligned_cols=36  Identities=42%  Similarity=1.040  Sum_probs=28.7

Q ss_pred             eeccccccccc--ccc--ccccccEecccccccc---cCCCCCCC
Q 020290           96 DCPVCYEPLNI--PVY--QCGNGHVVCHRCCCDL---MNKCPSCR  133 (328)
Q Consensus        96 ~CpiC~~~l~~--Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~  133 (328)
                      .|+||++.+.+  .++  .|  ||.||..|+.+|   ..+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPC--GHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETT--SEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccC--CCeeCHHHHHHHHHhCCcCCccC
Confidence            59999999953  333  67  999999999987   47899995

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=1.5e-05  Score=74.01  Aligned_cols=44  Identities=30%  Similarity=0.751  Sum_probs=38.2

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      ....|.+|++...+|-- .|  ||+||.+|+..|   ...||.||..+..
T Consensus       238 a~~kC~LCLe~~~~pSaTpC--GHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  238 ATRKCSLCLENRSNPSATPC--GHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCceEEEecCCCCCCcCcC--cchHHHHHHHHHHccccCCCcccccCCC
Confidence            35799999999999976 89  999999999987   4679999988753

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.62  E-value=1.6e-05  Score=52.64  Aligned_cols=38  Identities=47%  Similarity=1.203  Sum_probs=31.1

Q ss_pred             eecccccccccccc--ccccccEecccccccc----cCCCCCCCcC
Q 020290           96 DCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL----MNKCPSCRLP  135 (328)
Q Consensus        96 ~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~----~~~CP~C~~~  135 (328)
                      .|+||.+.+..++.  .|  ||.||..|+..+    ...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C--~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPC--GHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCC--CChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            49999999976655  48  999999999875    2579999865

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.55  E-value=1.7e-05  Score=53.49  Aligned_cols=26  Identities=46%  Similarity=1.240  Sum_probs=18.1

Q ss_pred             eccccccccc----ccc-ccccccEecccccccc
Q 020290           97 CPVCYEPLNI----PVY-QCGNGHVVCHRCCCDL  125 (328)
Q Consensus        97 CpiC~~~l~~----Pv~-qC~~GH~~C~~C~~~~  125 (328)
                      ||||.+ +..    |+. .|  ||+||..|+.++
T Consensus         1 CpIc~e-~~~~~n~P~~L~C--GH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPC--GHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE-SS--S-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeC--ccHHHHHHHHHH
Confidence            899999 766    876 99  999999999987

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.49  E-value=1.8e-05  Score=73.42  Aligned_cols=108  Identities=22%  Similarity=0.488  Sum_probs=69.5

Q ss_pred             eeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC----------------CcchhhHHhhhceee
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH----------------SRSTAMEKVIESIQV  153 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~----------------~r~~~le~~l~~l~v  153 (328)
                      .+.|-||...++.|+. .|  ||.||+-||.+.   +..||.|+.+...                .+++.  .+..-|++
T Consensus        25 ~lrC~IC~~~i~ip~~TtC--gHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~--~l~~~L~~  100 (391)
T COG5432          25 MLRCRICDCRISIPCETTC--GHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRD--LLRKVLES  100 (391)
T ss_pred             HHHhhhhhheeecceeccc--ccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccH--HHHHHHhc
Confidence            5889999999999988 99  999999999985   4789999987532                12221  12233455


Q ss_pred             eccc-----CCCCCCcccccchhhh--------------------------cccccccCCCCCCCCCCccccccchHhhh
Q 020290          154 ACEN-----ADYGCKEKMSYSEKYD--------------------------HGRACHYTPCSCPLAACNFVGSFHQIYQH  202 (328)
Q Consensus       154 ~C~~-----~~~GC~~~~~~~~~~~--------------------------He~~C~~~~~~CP~~gC~~~g~~~~L~~H  202 (328)
                      .|+-     ...-|.|......-.+                          -.+.=.-..+.||.  |....+.++|..|
T Consensus       101 ~~~~p~p~~ee~p~~~E~v~~~dS~S~~~~~eD~~~~~sS~~~iAKkt~~D~~KrK~E~l~~CP~--C~~~~P~~~i~~H  178 (391)
T COG5432         101 LCRLPRPIKEERPCRWETVIAQDSASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPA--CSNLVPHNQINQH  178 (391)
T ss_pred             ccCCCCchhhcCCCchhheeccccccccchhhhhhhhccChHHHHhhhhhHHHHhHHHhhhcCch--hhccCchHHHHHH
Confidence            6632     2334666433221100                          00000012478986  9988899999999


Q ss_pred             hhhcc
Q 020290          203 FRGVH  207 (328)
Q Consensus       203 l~~~H  207 (328)
                      |..+-
T Consensus       179 LD~CL  183 (391)
T COG5432         179 LDSCL  183 (391)
T ss_pred             HHHHh
Confidence            97763

>PHA02926 zinc finger-like protein; Provisional

Probab=97.45  E-value=2.5e-05  Score=70.13  Aligned_cols=43  Identities=28%  Similarity=0.746  Sum_probs=34.2

Q ss_pred             eeeeccccccccc---------ccc-ccccccEeccccccccc---------CCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNI---------PVY-QCGNGHVVCHRCCCDLM---------NKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~---------Pv~-qC~~GH~~C~~C~~~~~---------~~CP~C~~~~~~  138 (328)
                      ...|+||++....         ++. .|  +|.||..|+.+|.         ..||.||..+..
T Consensus       170 E~eCgICmE~I~eK~~~~eRrFGIL~~C--nHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRYFGLLDSC--NHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCccCccccccccccccccccccCCC--CchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            5789999998632         344 78  9999999999984         239999998764

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.33  E-value=9.8e-05  Score=69.93  Aligned_cols=43  Identities=33%  Similarity=0.767  Sum_probs=32.8

Q ss_pred             Ceeeeccccc--cccccc--c--ccccccEecccccccc----cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYE--PLNIPV--Y--QCGNGHVVCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~--~l~~Pv--~--qC~~GH~~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      +...||+|..  ++.+-.  +  .|  ||.||.+|+..+    ...||.|+.++.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~C--GH~~C~sCv~~l~~~~~~~CP~C~~~lr   54 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGSGSCPECDTPLR   54 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCC--CCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence            3468999999  454431  2  58  999999999985    258999998764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=5.7e-05  Score=75.13  Aligned_cols=43  Identities=37%  Similarity=0.970  Sum_probs=36.3

Q ss_pred             eeeecccccccccccc-ccccccEecccccccc--------cCCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL--------MNKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~--------~~~CP~C~~~~~~  138 (328)
                      .+.||||++...-|+. .|  ||+||..|+-..        ...||.|+..+..
T Consensus       186 ~~~CPICL~~~~~p~~t~C--GHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNC--GHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccccccc--CceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            5789999999887776 89  999999999873        2589999988764

>smart00184 RING Ring finger

Probab=97.27  E-value=6.3e-05  Score=47.89  Aligned_cols=34  Identities=47%  Similarity=1.195  Sum_probs=28.5

Q ss_pred             ecccccccccccc-ccccccEecccccccc----cCCCCCC
Q 020290           97 CPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSC  132 (328)
Q Consensus        97 CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C  132 (328)
                      |+||++....++. .|  ||.||..|+..+    ...||.|
T Consensus         1 C~iC~~~~~~~~~~~C--~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPC--GHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecC--CChHHHHHHHHHHHhCcCCCCCC
Confidence            7899999887776 89  999999999875    2568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=1.9e-05  Score=75.14  Aligned_cols=44  Identities=30%  Similarity=0.711  Sum_probs=37.8

Q ss_pred             eeeecccccccccccc--ccccccEecccccccc----cCCCCCCCcCCCCC
Q 020290           94 VLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL----MNKCPSCRLPNGHS  139 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~~  139 (328)
                      .+.||||+.+|+.-+.  .|  +|.||..||.+.    .+.||+||+.+...
T Consensus        43 ~v~c~icl~llk~tmttkeC--lhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   43 QVICPICLSLLKKTMTTKEC--LHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhccHHHHHHHHhhcccHHH--HHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            5899999999987665  79  999999999874    47999999987654

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=6.1e-05  Score=69.27  Aligned_cols=62  Identities=31%  Similarity=0.730  Sum_probs=46.2

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccccc---CCCCCCCcCC-CCCcchhhHHhhhceeeec
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM---NKCPSCRLPN-GHSRSTAMEKVIESIQVAC  155 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~---~~CP~C~~~~-~~~r~~~le~~l~~l~v~C  155 (328)
                      .+.+.||||++.|..|.. .|  ||.||..|+..+.   ..||.|+... ...+|..+.+++..+....
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C--~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPC--GHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             cccccChhhHHHhhcCccccc--cchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence            357899999999999965 79  9999999999864   6899999411 1235666666666554433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00011  Score=76.28  Aligned_cols=44  Identities=39%  Similarity=0.887  Sum_probs=38.2

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~  138 (328)
                      ..|.||+|..=.++-|. .|  ||.||..|+.+.    ..+||.|..+|+.
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC--~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKC--GHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCchhhHHHHhc--chHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            36899999988888777 99  999999999874    4799999999874

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=97.00  E-value=0.00024  Score=50.90  Aligned_cols=43  Identities=21%  Similarity=0.489  Sum_probs=33.9

Q ss_pred             cccccccCCCCCCCCCCccccccchHhhhhhhccCCCceEEEe
Q 020290          174 HGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVY  216 (328)
Q Consensus       174 He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y  216 (328)
                      |++.|+++++.||+.+|.....+.+|..|+...+....+...|
T Consensus         1 H~~~C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~   43 (60)
T PF02176_consen    1 HEEECPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPY   43 (60)
T ss_dssp             HHTTSTTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS
T ss_pred             CcccCCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCC
Confidence            7888999999999877777789999999999888888777666

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00016  Score=66.49  Aligned_cols=44  Identities=30%  Similarity=0.671  Sum_probs=37.1

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccc-cc----CCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCD-LM----NKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~-~~----~~CP~C~~~~~  137 (328)
                      ...+.|+||.++...|.. .|  ||+||-.|+-. |.    ..||.||+...
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~C--gHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPC--GHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccc--cchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            346899999999999988 89  99999999987 51    46999987643

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.68  E-value=0.0012  Score=67.69  Aligned_cols=106  Identities=20%  Similarity=0.416  Sum_probs=67.3

Q ss_pred             CCCeeeecccccccccccc-----ccccccEeccc--ccccc-------cCCCCCCCcCCCCCcchhhHHhh--hceeee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-----QCGNGHVVCHR--CCCDL-------MNKCPSCRLPNGHSRSTAMEKVI--ESIQVA  154 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-----qC~~GH~~C~~--C~~~~-------~~~CP~C~~~~~~~r~~~le~~l--~~l~v~  154 (328)
                      +.+...|+-|......--+     .|..--+.|..  |-..+       ...|+.|...+..   ..+++-.  -...+.
T Consensus       404 ~~~~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~---s~LekH~~~~Hkpv~  480 (567)
T PLN03086        404 DVDTVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQ---GEMEKHMKVFHEPLQ  480 (567)
T ss_pred             CCCeEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccch---HHHHHHHHhcCCCcc
Confidence            4556789999987643222     46544455652  55443       1479999877642   1122111  135567


Q ss_pred             cccCCCCCCcccccchhhhccc-ccccCCCCCCCCCCccccc-----------cchHhhhhhhc
Q 020290          155 CENADYGCKEKMSYSEKYDHGR-ACHYTPCSCPLAACNFVGS-----------FHQIYQHFRGV  206 (328)
Q Consensus       155 C~~~~~GC~~~~~~~~~~~He~-~C~~~~~~CP~~gC~~~g~-----------~~~L~~Hl~~~  206 (328)
                      |+     |...+...++..|.. .|+.+++.|++  |+....           ...|..|...+
T Consensus       481 Cp-----Cg~~~~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        481 CP-----CGVVLEKEQMVQHQASTCPLRLITCRF--CGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             CC-----CCCCcchhHHHhhhhccCCCCceeCCC--CCCccccCccccchhhhhhhHHHHHHhc
Confidence            76     777777788888865 79999999976  887664           23688887774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.50  E-value=0.0063  Score=62.42  Aligned_cols=37  Identities=19%  Similarity=0.372  Sum_probs=18.1

Q ss_pred             hhhhcccccccCCCCCCCCCCccccccchHhhhhhhccC
Q 020290          170 EKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHK  208 (328)
Q Consensus       170 ~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~  208 (328)
                      .+..|+..|.-+++.|.  .|+.....++|..|+...|.
T Consensus       529 ~Lt~HE~~CG~rt~~C~--~Cgk~Vrlrdm~~H~~~~h~  565 (567)
T PLN03086        529 GMSEHESICGSRTAPCD--SCGRSVMLKEMDIHQIAVHQ  565 (567)
T ss_pred             hHHHHHHhcCCcceEcc--ccCCeeeehhHHHHHHHhhc
Confidence            44455555555555552  35444444555555554443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.40  E-value=0.0019  Score=55.32  Aligned_cols=28  Identities=29%  Similarity=0.697  Sum_probs=24.6

Q ss_pred             CCCCCCCCCccccccchHhhhhhhccCC
Q 020290          182 PCSCPLAACNFVGSFHQIYQHFRGVHKH  209 (328)
Q Consensus       182 ~~~CP~~gC~~~g~~~~L~~Hl~~~H~~  209 (328)
                      +-.|+..+|.|.|.+.+|..|.+..|..
T Consensus       107 ~RsC~~e~C~F~GtY~eLrKHar~~HP~  134 (162)
T PF07800_consen  107 KRSCSQESCSFSGTYSELRKHARSEHPS  134 (162)
T ss_pred             CccCcccccccccCHHHHHHHHHhhCCC
Confidence            4467778999999999999999999985

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.25  E-value=0.0024  Score=48.00  Aligned_cols=36  Identities=42%  Similarity=1.087  Sum_probs=28.1

Q ss_pred             eeccccccccccc------------c--ccccccEecccccccc---cCCCCCCC
Q 020290           96 DCPVCYEPLNIPV------------Y--QCGNGHVVCHRCCCDL---MNKCPSCR  133 (328)
Q Consensus        96 ~CpiC~~~l~~Pv------------~--qC~~GH~~C~~C~~~~---~~~CP~C~  133 (328)
                      .|.||++.|.+|.            .  .|  ||.|-..|+.+|   ...||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C--~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPC--GHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETT--SEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEeccc--CCCEEHHHHHHHHhcCCcCCCCC
Confidence            4999999994332            2  47  999999999986   46899996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.14  E-value=0.0013  Score=58.18  Aligned_cols=54  Identities=22%  Similarity=0.583  Sum_probs=40.7

Q ss_pred             eeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC--CCcchhhHHhhhc
Q 020290           95 LDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG--HSRSTAMEKVIES  150 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~--~~r~~~le~~l~~  150 (328)
                      |.|-||..-+..||. .|  ||.||+.|..+-   ...|-.|.+.+.  ......+.+++..
T Consensus       197 F~C~iCKkdy~spvvt~C--GH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL~~  256 (259)
T COG5152         197 FLCGICKKDYESPVVTEC--GHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKMLNK  256 (259)
T ss_pred             eeehhchhhccchhhhhc--chhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHHhh
Confidence            889999999999998 99  999999998763   368999987653  1223345555543

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.0041  Score=58.21  Aligned_cols=43  Identities=30%  Similarity=0.696  Sum_probs=37.0

Q ss_pred             eeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCCC
Q 020290           95 LDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGHS  139 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~~  139 (328)
                      +.|-||...+..||. .|  ||.||..|..+-   ...|++|.+.+...
T Consensus       242 f~c~icr~~f~~pVvt~c--~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKC--GHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             ccccccccccccchhhcC--CceeehhhhccccccCCcceecccccccc
Confidence            679999999999998 99  999999998763   36899999887543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0049  Score=57.12  Aligned_cols=42  Identities=38%  Similarity=0.846  Sum_probs=34.9

Q ss_pred             eeeecccccccccccc--ccccccEecccccccc-----cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL-----MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~-----~~~CP~C~~~~~  137 (328)
                      ...||+|.+....|..  .|  ||++|-.|+.+-     .-.||.|..+..
T Consensus       239 ~~~C~~Cg~~PtiP~~~~~C--~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  239 DTECPVCGEPPTIPHVIGKC--GHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CceeeccCCCCCCCeeeccc--cceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4689999999999976  48  999999999873     248999987653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.54  E-value=0.0032  Score=45.08  Aligned_cols=30  Identities=30%  Similarity=0.722  Sum_probs=22.4

Q ss_pred             eeeecccccccccccc--ccccccEecccccccc
Q 020290           94 VLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL  125 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~  125 (328)
                      .+.|||...+|.+||.  .|  ||+|.+..+..+
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C--~H~fek~aI~~~   42 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKC--GHTFEKEAILQY   42 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS----EEEHHHHHHH
T ss_pred             ccCCCCcCChhhCCcCcCCC--CCeecHHHHHHH
Confidence            4799999999999987  79  999999888775

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.19  E-value=0.0061  Score=42.00  Aligned_cols=40  Identities=40%  Similarity=1.041  Sum_probs=20.3

Q ss_pred             eccccccccc--c-ccccccccEecccccccc----cCCCCCCCcCC
Q 020290           97 CPVCYEPLNI--P-VYQCGNGHVVCHRCCCDL----MNKCPSCRLPN  136 (328)
Q Consensus        97 CpiC~~~l~~--P-v~qC~~GH~~C~~C~~~~----~~~CP~C~~~~  136 (328)
                      ||+|.+.+..  - ++.|++|+.+|..|+.++    ...||.||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            7899998832  2 337888999999998875    36899999864

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.13  E-value=0.0022  Score=45.07  Aligned_cols=41  Identities=39%  Similarity=0.899  Sum_probs=32.7

Q ss_pred             eeecccccccccccc-ccccccE-ecccccccc----cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      -+|-||.+-..+.|. .|  ||. .|..|-.++    ...||.||.++.
T Consensus         8 dECTICye~pvdsVlYtC--GHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTC--GHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHc--chHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            379999998877765 99  995 788887664    368999998753

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.11  E-value=0.005  Score=60.71  Aligned_cols=44  Identities=34%  Similarity=0.709  Sum_probs=38.5

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      .+.|.|.||...|.+||. .|  ||.||..|+.+.   ...||.|+..+.
T Consensus        82 ~sef~c~vc~~~l~~pv~tpc--ghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPC--GHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhcCCCccccc--cccccHHHHHHHhccCCCCcccccccc
Confidence            567999999999999998 88  999999997774   368999998875

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.11  E-value=0.0049  Score=58.55  Aligned_cols=43  Identities=23%  Similarity=0.587  Sum_probs=36.7

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      ....|.+|..+|.++..  .|  =|.||++|+.+.   ...||.|...+.
T Consensus        14 ~~itC~LC~GYliDATTI~eC--LHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITEC--LHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             cceehhhccceeecchhHHHH--HHHHHHHHHHHHHHHhccCCccceecc
Confidence            35789999999999854  89  999999999884   479999988764

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.78  E-value=0.0097  Score=49.49  Aligned_cols=51  Identities=25%  Similarity=0.693  Sum_probs=41.6

Q ss_pred             CeeeecCCCCeeeecccccccccccc-----ccccccEeccccccccc------CCCCCCCcCCC
Q 020290           84 PVTVTLNDPEVLDCPVCYEPLNIPVY-----QCGNGHVVCHRCCCDLM------NKCPSCRLPNG  137 (328)
Q Consensus        84 ~~~~~~~~~~~l~CpiC~~~l~~Pv~-----qC~~GH~~C~~C~~~~~------~~CP~C~~~~~  137 (328)
                      -+++|+++ ..++|.||.+...+..|     -|  |-.+|..|...+.      +.||.|+..+.
T Consensus        71 vmnvF~d~-~lYeCnIC~etS~ee~FLKPneCC--gY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   71 VMNVFLDP-KLYECNICKETSAEERFLKPNECC--GYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             HheeecCC-CceeccCcccccchhhcCCccccc--chHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            45788855 88999999999877665     36  9999999998852      68999988775

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.63  E-value=0.0076  Score=57.40  Aligned_cols=46  Identities=35%  Similarity=0.941  Sum_probs=36.0

Q ss_pred             CCCeeeeccccccccc--ccc-ccccccEecccccccc----cCCCCCCCcCCC
Q 020290           91 DPEVLDCPVCYEPLNI--PVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~--Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      |.+++ ||.|.+++.+  --| .|++|..+|.-|+..+    ...||.||....
T Consensus        12 deed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             ccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            44455 9999999853  344 7888999999999875    579999998653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=0.014  Score=54.94  Aligned_cols=41  Identities=34%  Similarity=0.780  Sum_probs=35.6

Q ss_pred             eeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      -+|+||+.-..-|+. .|  +|.||.-|++..    ...|++||.++.
T Consensus         8 ~eC~IC~nt~n~Pv~l~C--~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYC--FHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             CcceeeeccCCcCccccc--cchhhhhhhcchhhcCCCCCceecCCCC
Confidence            479999999988876 89  999999999874    356999999985

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=0.014  Score=60.23  Aligned_cols=41  Identities=32%  Similarity=0.732  Sum_probs=34.7

Q ss_pred             eeeeccccccccc-----c-ccccccccEecccccccc---cCCCCCCCcCC
Q 020290           94 VLDCPVCYEPLNI-----P-VYQCGNGHVVCHRCCCDL---MNKCPSCRLPN  136 (328)
Q Consensus        94 ~l~CpiC~~~l~~-----P-v~qC~~GH~~C~~C~~~~---~~~CP~C~~~~  136 (328)
                      .-.|+||.+.|..     | ...|  ||+|+..|+.+|   ...||.||..+
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C--~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPC--GHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             CCeeeeechhhccccccccceeec--ccchHHHHHHHHHHHhCcCCcchhhh
Confidence            4689999999976     3 4499  999999999998   47999999843

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.82  E-value=0.016  Score=54.27  Aligned_cols=38  Identities=39%  Similarity=0.925  Sum_probs=33.3

Q ss_pred             eeecccccccccccc--ccccccEecccccccc----cCCCCCCCc
Q 020290           95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL----MNKCPSCRL  134 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~----~~~CP~C~~  134 (328)
                      |.||.|..+|+.|+.  .|  ||.||..|+...    -..||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC--~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCC--GHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccc--cchHHHHHHhhhhhhccccCCCccc
Confidence            899999999999987  46  999999999963    268999976

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=93.80  E-value=0.018  Score=44.49  Aligned_cols=40  Identities=33%  Similarity=0.734  Sum_probs=29.1

Q ss_pred             eeccccccccc-ccc--ccccccEecccccccc------cCCCCCCCcCCC
Q 020290           96 DCPVCYEPLNI-PVY--QCGNGHVVCHRCCCDL------MNKCPSCRLPNG  137 (328)
Q Consensus        96 ~CpiC~~~l~~-Pv~--qC~~GH~~C~~C~~~~------~~~CP~C~~~~~  137 (328)
                      .||.|..+-.+ |+.  +|  +|.|=..|+.++      +..||.||++..
T Consensus        34 ~Cp~Ck~Pgd~Cplv~g~C--~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   34 CCPDCKFPGDDCPLVWGKC--SHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCccCCCCCCceeeccC--ccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            35566655433 544  67  999999999986      368999998754

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.58  E-value=0.035  Score=50.73  Aligned_cols=43  Identities=26%  Similarity=0.712  Sum_probs=33.2

Q ss_pred             Ceeeeccccccc-ccccc--ccccccEecccccccccC-CCCCCCcCCC
Q 020290           93 EVLDCPVCYEPL-NIPVY--QCGNGHVVCHRCCCDLMN-KCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l-~~Pv~--qC~~GH~~C~~C~~~~~~-~CP~C~~~~~  137 (328)
                      +-..|..|+.-- .+|.|  .|  +|+||..|...... .||.|++++.
T Consensus         2 ~~VhCn~C~~~~~~~~f~LTaC--~HvfC~~C~k~~~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    2 DFVHCNKCFRFPSQDPFFLTAC--RHVFCEPCLKASSPDVCPLCKKSIR   48 (233)
T ss_pred             ceEEeccccccCCCCceeeeec--hhhhhhhhcccCCccccccccceee
Confidence            346899888754 35555  89  99999999887544 8999999864

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.51  E-value=0.017  Score=54.00  Aligned_cols=40  Identities=35%  Similarity=0.865  Sum_probs=34.3

Q ss_pred             eeeecccccccccccc-cccccc-EecccccccccCCCCCCCcCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGH-VVCHRCCCDLMNKCPSCRLPN  136 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH-~~C~~C~~~~~~~CP~C~~~~  136 (328)
                      ...|.||.+...+=++ .|  || +.|..|-.++ +.||+||+-+
T Consensus       300 ~~LC~ICmDaP~DCvfLeC--GHmVtCt~CGkrm-~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLEC--GHMVTCTKCGKRM-NECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeec--CcEEeehhhcccc-ccCchHHHHH
Confidence            4569999999999888 99  99 5799998887 5999998754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.36  E-value=0.071  Score=37.69  Aligned_cols=41  Identities=32%  Similarity=0.655  Sum_probs=31.0

Q ss_pred             eeecccccccc-ccccccccccEeccccccccc-CCCCCCCcCCC
Q 020290           95 LDCPVCYEPLN-IPVYQCGNGHVVCHRCCCDLM-NKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~-~Pv~qC~~GH~~C~~C~~~~~-~~CP~C~~~~~  137 (328)
                      ..|-.|...-. .++.+|  ||++|..|+.-.. +-||.|..++.
T Consensus         8 ~~~~~~~~~~~~~~~~pC--gH~I~~~~f~~~rYngCPfC~~~~~   50 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPC--GHLICDNCFPGERYNGCPFCGTPFE   50 (55)
T ss_pred             eeEEEccccccccccccc--cceeeccccChhhccCCCCCCCccc
Confidence            45667777744 445599  9999999998643 67999998875

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=92.96  E-value=0.025  Score=56.90  Aligned_cols=46  Identities=22%  Similarity=0.639  Sum_probs=38.8

Q ss_pred             CCCCeeeecccccccccccc-ccccccEecccccccc--------cCCCCCCCcCCC
Q 020290           90 NDPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL--------MNKCPSCRLPNG  137 (328)
Q Consensus        90 ~~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~--------~~~CP~C~~~~~  137 (328)
                      ++.....|.+|.++..+++. .|  .|.||.-|+...        ...||.|...+.
T Consensus       532 enk~~~~C~lc~d~aed~i~s~C--hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSC--HHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cccCceeecccCChhhhhHhhhh--hHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            44557899999999999988 99  999999999763        358999988764

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=0.041  Score=52.97  Aligned_cols=42  Identities=33%  Similarity=0.800  Sum_probs=35.7

Q ss_pred             eeeecccccccccccc-ccccccE-eccccccccc---CCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLM---NKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~---~~CP~C~~~~~  137 (328)
                      --+|-||+.-.++-+. .|  -|. .|+.|.+.+.   +.||+||+++.
T Consensus       290 gkeCVIClse~rdt~vLPC--RHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPC--RHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcceEEecc--hhhehhHhHHHHHHHhhcCCCccccchH
Confidence            4689999999998765 99  995 8999998863   78999999875

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.84  E-value=0.025  Score=54.27  Aligned_cols=48  Identities=29%  Similarity=0.614  Sum_probs=36.5

Q ss_pred             ecCCCCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           88 TLNDPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        88 ~~~~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      .+.+.+.-.||||+.--...|+ .|  +|.-|..||.+.   .+.|-.|+..+.
T Consensus       416 ~lp~sEd~lCpICyA~pi~Avf~PC--~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  416 DLPDSEDNLCPICYAGPINAVFAPC--SHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCCCcccccCcceecccchhhccCC--CCchHHHHHHHHHhcCCeeeEecceee
Confidence            3344556789999987666777 89  999999999985   367888876543

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=0.029  Score=57.52  Aligned_cols=36  Identities=39%  Similarity=0.877  Sum_probs=29.9

Q ss_pred             Ceeeeccccccc----ccccc-ccccccEecccccccc-cCCCC
Q 020290           93 EVLDCPVCYEPL----NIPVY-QCGNGHVVCHRCCCDL-MNKCP  130 (328)
Q Consensus        93 ~~l~CpiC~~~l----~~Pv~-qC~~GH~~C~~C~~~~-~~~CP  130 (328)
                      +.|.|+||+..+    ..|++ +|  ||++|..|..++ +..||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~c--ghtic~~c~~~lyn~scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQC--GHTICGHCVQLLYNASCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccc--cchHHHHHHHhHhhccCC
Confidence            468899997665    35888 99  999999999987 56888

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=91.22  E-value=0.042  Score=53.51  Aligned_cols=40  Identities=30%  Similarity=0.733  Sum_probs=33.2

Q ss_pred             eecccccccccc-ccccccccEeccccccccc-----CCCCCCCcCCC
Q 020290           96 DCPVCYEPLNIP-VYQCGNGHVVCHRCCCDLM-----NKCPSCRLPNG  137 (328)
Q Consensus        96 ~CpiC~~~l~~P-v~qC~~GH~~C~~C~~~~~-----~~CP~C~~~~~  137 (328)
                      .|-||-+-=++= |-.|  ||+.|..|+..|+     ..||.||..+.
T Consensus       371 LCKICaendKdvkIEPC--GHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPC--GHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcccccc--cchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            499999987763 3389  9999999999984     68999998774

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.36  E-value=0.15  Score=48.16  Aligned_cols=41  Identities=29%  Similarity=0.678  Sum_probs=33.3

Q ss_pred             eeeccccccccc--c--ccccccccEecccccccc----cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNI--P--VYQCGNGHVVCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~--P--v~qC~~GH~~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      .+|.||..-+..  .  +..|  .|.|=..|+.+|    +.+||+|+.++.
T Consensus       324 veCaICms~fiK~d~~~vlPC--~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPC--DHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             ceEEEEhhhhcccceEEEecc--CceechhHHHHHHhhhcccCCccCCCCC
Confidence            789999987742  2  2279  999999999998    479999998763

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=89.30  E-value=0.081  Score=52.10  Aligned_cols=30  Identities=37%  Similarity=0.906  Sum_probs=27.0

Q ss_pred             Ceeeecccccccccccc-ccccccEeccccccc
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCD  124 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~  124 (328)
                      +.|.||||...+++||. .|  ||..|..|...
T Consensus         3 eelkc~vc~~f~~epiil~c--~h~lc~~ca~~   33 (699)
T KOG4367|consen    3 EELKCPVCGSFYREPIILPC--SHNLCQACARN   33 (699)
T ss_pred             ccccCceehhhccCceEeec--ccHHHHHHHHh
Confidence            46899999999999988 99  99999999754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=89.24  E-value=0.23  Score=34.84  Aligned_cols=49  Identities=20%  Similarity=0.468  Sum_probs=31.8

Q ss_pred             eecccCCCCCCcccccchhhhcccc--cc-cCCCCCCCCCCccccccchHhhhhhhccC
Q 020290          153 VACENADYGCKEKMSYSEKYDHGRA--CH-YTPCSCPLAACNFVGSFHQIYQHFRGVHK  208 (328)
Q Consensus       153 v~C~~~~~GC~~~~~~~~~~~He~~--C~-~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~  208 (328)
                      +.|||    |...+....|..|...  .. -..+.||.  |... ...+|..|+...|.
T Consensus         3 f~CP~----C~~~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~-~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPY----CGKGFSESSLVEHCEDEHRSESKNVVCPI--CSSR-VTDNLIRHLNSQHR   54 (54)
T ss_pred             cCCCC----CCCccCHHHHHHHHHhHCcCCCCCccCCC--chhh-hhhHHHHHHHHhcC
Confidence            56776    6666666666666432  11 12588987  8764 34699999988874

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=88.69  E-value=0.24  Score=46.27  Aligned_cols=44  Identities=34%  Similarity=0.638  Sum_probs=36.1

Q ss_pred             CCeeeeccccccccc--c-cc--ccccccEeccccccccc--CCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNI--P-VY--QCGNGHVVCHRCCCDLM--NKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~--P-v~--qC~~GH~~C~~C~~~~~--~~CP~C~~~~~  137 (328)
                      ...|.|||....|..  + |+  .|  ||+|+..++..+.  ..||.|..++.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~c--G~V~s~~alke~k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPC--GCVFSEKALKELKKSKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCC--CCEeeHHHHHhhcccccccccCCccc
Confidence            346999999999953  2 33  78  9999999999984  47999999986

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.24  E-value=0.19  Score=48.81  Aligned_cols=44  Identities=30%  Similarity=0.858  Sum_probs=36.2

Q ss_pred             Ceeeeccccccccccc-----c----ccccccEeccccccccc----------CCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPV-----Y----QCGNGHVVCHRCCCDLM----------NKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv-----~----qC~~GH~~C~~C~~~~~----------~~CP~C~~~~~~  138 (328)
                      ....|.||.+....+.     +    .|  -|.||..|+.+|.          ..||.||.....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC--~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNC--NHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCc--chhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            3578999999987766     3    58  9999999999983          579999987653

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.85  E-value=0.21  Score=45.84  Aligned_cols=43  Identities=28%  Similarity=0.426  Sum_probs=35.4

Q ss_pred             eeeeccccccccccc----c-ccccccEeccccccccc---CCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNIPV----Y-QCGNGHVVCHRCCCDLM---NKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv----~-qC~~GH~~C~~C~~~~~---~~CP~C~~~~~~  138 (328)
                      .+.||+|.+.|...+    . .|  ||++|..|.+++.   ..||+|..++..
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~s--g~Vv~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPS--GHVVTKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             ceecccchhhhcCccceEEeccC--CcEeeHHHHHHhccccccccCCCCcCcc
Confidence            589999999998632    2 67  9999999999973   579999988764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.07  E-value=0.11  Score=49.83  Aligned_cols=44  Identities=36%  Similarity=0.963  Sum_probs=35.2

Q ss_pred             CCCeeeeccccccccc-cccccccccEecccccccc-----cCCCCCCCcCC
Q 020290           91 DPEVLDCPVCYEPLNI-PVYQCGNGHVVCHRCCCDL-----MNKCPSCRLPN  136 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~-Pv~qC~~GH~~C~~C~~~~-----~~~CP~C~~~~  136 (328)
                      |.+.-.|.||-.-+.- -++.|  +|..|.-|--++     .+.||.|+...
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC--~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPC--GHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccceeEEecCCceEEEeccC--CchHHHHHHHHHHHHHhccCCCcccccc
Confidence            4456789999998764 35589  999999998875     47899999764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.83  E-value=0.26  Score=47.55  Aligned_cols=44  Identities=36%  Similarity=0.802  Sum_probs=32.3

Q ss_pred             CCCeeeecccccccccccc-ccccccEec-ccccccccCCCCCCCcCCC
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVC-HRCCCDLMNKCPSCRLPNG  137 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C-~~C~~~~~~~CP~C~~~~~  137 (328)
                      .+-...|.||.+-.++-++ .|  ||..| ..|...+ .+||.||+.+.
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpc--Gh~ccct~cs~~l-~~CPvCR~rI~  347 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPC--GHVCCCTLCSKHL-PQCPVCRQRIR  347 (355)
T ss_pred             cCCCCceEEecCCccceeeecC--CcEEEchHHHhhC-CCCchhHHHHH
Confidence            3334679999999998888 99  99866 2243344 57999998653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=85.42  E-value=0.14  Score=53.89  Aligned_cols=41  Identities=27%  Similarity=0.581  Sum_probs=32.6

Q ss_pred             eeecccccccccccc----ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVY----QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~----qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      -.||+|..-+.+-..    .|  +|.||..|+..|   ...||.|+..+.
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c--~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHT--AHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhHHHHHHHHHhhcccccc--ccccHHHHhhhhhhhcccCchhhhhhh
Confidence            459999887765432    68  999999999987   378999998764

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=85.08  E-value=0.42  Score=35.59  Aligned_cols=38  Identities=34%  Similarity=0.765  Sum_probs=23.3

Q ss_pred             eeeccccccccccccccccccEecccccccc--cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL--MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~~CP~C~~~~~  137 (328)
                      +.||.|..+|..-     +|+..|..|-...  ...||.|.+++.
T Consensus         2 ~~CP~C~~~L~~~-----~~~~~C~~C~~~~~~~a~CPdC~~~Le   41 (70)
T PF07191_consen    2 NTCPKCQQELEWQ-----GGHYHCEACQKDYKKEAFCPDCGQPLE   41 (70)
T ss_dssp             -B-SSS-SBEEEE-----TTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred             CcCCCCCCccEEe-----CCEEECccccccceecccCCCcccHHH
Confidence            5799999997752     2788999998874  368999988764

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.65  E-value=0.58  Score=44.16  Aligned_cols=41  Identities=39%  Similarity=1.056  Sum_probs=32.8

Q ss_pred             eeeecccccccc------cc-ccccccccEeccccccccc----CCCCCCCcCC
Q 020290           94 VLDCPVCYEPLN------IP-VYQCGNGHVVCHRCCCDLM----NKCPSCRLPN  136 (328)
Q Consensus        94 ~l~CpiC~~~l~------~P-v~qC~~GH~~C~~C~~~~~----~~CP~C~~~~  136 (328)
                      .+.|-||.+.+.      .| +..|  ||.+|..|..++.    ..||.||.+.
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c--~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKC--GHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCccccc--CceehHhHHHHHhcCceeeccCCCCcc
Confidence            467999998874      24 3479  9999999999972    5799999984

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.37  E-value=0.35  Score=47.79  Aligned_cols=30  Identities=27%  Similarity=0.863  Sum_probs=21.5

Q ss_pred             eeeecccc-ccccc-ccc---ccccccEecccccccc
Q 020290           94 VLDCPVCY-EPLNI-PVY---QCGNGHVVCHRCCCDL  125 (328)
Q Consensus        94 ~l~CpiC~-~~l~~-Pv~---qC~~GH~~C~~C~~~~  125 (328)
                      ...|.||. +.... -.+   .|  +|.||..|+.+.
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C--~H~fC~~C~k~~  180 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKC--GHRFCKDCVKQH  180 (384)
T ss_pred             cccCccCccccccHhhhHHHhcc--cchhhhHHhHHH
Confidence            56899999 44332 122   57  999999999864

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=83.27  E-value=0.51  Score=45.86  Aligned_cols=42  Identities=26%  Similarity=0.744  Sum_probs=33.1

Q ss_pred             Ceeeeccccccc-ccc------------c-cccccccEecccccccc---cCCCCCCCcCC
Q 020290           93 EVLDCPVCYEPL-NIP------------V-YQCGNGHVVCHRCCCDL---MNKCPSCRLPN  136 (328)
Q Consensus        93 ~~l~CpiC~~~l-~~P------------v-~qC~~GH~~C~~C~~~~---~~~CP~C~~~~  136 (328)
                      ++-.|-||.+-+ .+|            - ..|  ||++=-.|++.|   +..||.||.++
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpC--GHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPC--GHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccc--cceeeHHHHHHHHHhccCCCcccCcc
Confidence            346799999874 333            2 268  999999999987   58999999984

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.07  E-value=0.44  Score=46.61  Aligned_cols=41  Identities=39%  Similarity=0.738  Sum_probs=31.7

Q ss_pred             Ceeeeccccccc---ccccc-ccccccEeccccccccc------CCCCCCCcC
Q 020290           93 EVLDCPVCYEPL---NIPVY-QCGNGHVVCHRCCCDLM------NKCPSCRLP  135 (328)
Q Consensus        93 ~~l~CpiC~~~l---~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C~~~  135 (328)
                      ..|.|||=.+--   .||+. .|  ||++|..-+.++.      .+||+|-..
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~C--GHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLIC--GHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             ceeecccchhhccCCCCCeeeec--cceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            468999976655   36777 99  9999999988872      478888543

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.93  E-value=0.88  Score=44.18  Aligned_cols=41  Identities=22%  Similarity=0.534  Sum_probs=33.1

Q ss_pred             eeecccccccccc----ccccccccEecccccccc----cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIP----VYQCGNGHVVCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~P----v~qC~~GH~~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      ..|.||++-+..-    +..|  .|.|=..|+..|    ...||+|+..+.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC--~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPC--SHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecC--CCchhhccchhhHhhcCccCCCCCCcCC
Confidence            4899999998642    3489  999999999998    245999998653

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=82.45  E-value=0.4  Score=45.07  Aligned_cols=39  Identities=31%  Similarity=0.849  Sum_probs=29.1

Q ss_pred             eecccccc-cccc-cc----ccccccEecccccccc----cCCCCCCCcCC
Q 020290           96 DCPVCYEP-LNIP-VY----QCGNGHVVCHRCCCDL----MNKCPSCRLPN  136 (328)
Q Consensus        96 ~CpiC~~~-l~~P-v~----qC~~GH~~C~~C~~~~----~~~CP~C~~~~  136 (328)
                      .||+|..- ...| ++    .|  ||..|.+|...+    ...||.|...+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C--~H~lCEsCvd~iF~~g~~~CpeC~~iL   50 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINEC--GHRLCESCVDRIFSLGPAQCPECMVIL   50 (300)
T ss_pred             CCcccccceecCccceeeeccc--cchHHHHHHHHHHhcCCCCCCcccchh
Confidence            48888753 3333 22    68  999999999987    36899998765

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=82.27  E-value=0.32  Score=36.18  Aligned_cols=43  Identities=30%  Similarity=0.715  Sum_probs=16.7

Q ss_pred             eeecccccccc----ccccccc---cccEecccccccc--------------cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLN----IPVYQCG---NGHVVCHRCCCDL--------------MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~----~Pv~qC~---~GH~~C~~C~~~~--------------~~~CP~C~~~~~  137 (328)
                      +.|+||+..+.    .|+..|+   +++.|=..|+.+|              ...||.|+.++.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            57999998764    3555663   2444445677765              135777776654

>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454

Probab=81.84  E-value=0.37  Score=41.32  Aligned_cols=28  Identities=39%  Similarity=1.013  Sum_probs=23.3

Q ss_pred             ccccccE--------------ecccccccccCCCCCCCcCCC
Q 020290          110 QCGNGHV--------------VCHRCCCDLMNKCPSCRLPNG  137 (328)
Q Consensus       110 qC~~GH~--------------~C~~C~~~~~~~CP~C~~~~~  137 (328)
                      -|.|||.              ||..|-.+....||.|..++.
T Consensus         9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~Cp~C~~~Ir   50 (158)
T PF10083_consen    9 ICLNGHVITDSYDKNPELREKFCSKCGAKTITSCPNCSTPIR   50 (158)
T ss_pred             HccCccccccccccCchHHHHHHHHhhHHHHHHCcCCCCCCC
Confidence            4888876              899998887678999988874

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.62  E-value=0.44  Score=33.05  Aligned_cols=39  Identities=38%  Similarity=0.882  Sum_probs=19.7

Q ss_pred             eeecccccccccccc--ccccccEecccccccc-------cCCCCCCCcC
Q 020290           95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL-------MNKCPSCRLP  135 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~-------~~~CP~C~~~  135 (328)
                      |.||+-...+..|+.  .|  .|.-|-+=..=+       ...||.|.++
T Consensus         3 L~CPls~~~i~~P~Rg~~C--~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNC--KHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT----SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcC--cccceECHHHHHHHhhccCCeECcCCcCc
Confidence            689999999999998  78  998754311101       1469999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
2a25_A	193	Crystal Structure Of Siah1 Sbd Bound To The Peptide		9e-05
1k2f_A	190	Siah, Seven In Absentia Homolog Length = 190		5e-04
2an6_A	191	Protein-Peptide Complex Length = 191		5e-04

>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFR 204
           V  S+   C+ A  GC+  + ++EK DH   C + P  C CP A+C + GS   +  H  
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 205 GVHKH----AAEEFVY-----------DKVLRITLSVHHDLIILQEEKNGD--------- 240
             HK       E+ V+           D V+  +    H +++L++++  D         
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120
Query: 241 -LFILNNSTEPDGYRISVN 258
            L       E   YR+ +N
Sbjct: 121 QLIGTRKQAENFAYRLELN 139

>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 150 SIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFRGVH 207
           S+   C+ A  GC+  + ++EK +H   C + P  C CP A+C + GS   +  H    H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60
Query: 208 KH----AAEEFVY-----------DKVLRITLSVHHDLIILQEEKNGD----------LF 242
           K       E+ V+           D V+  +    H +++L++++  D          L 
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120
Query: 243 ILNNSTEPDGYRISVN 258
                 E   YR+ +N
Sbjct: 121 GTRKQAENFAYRLELN 136

>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 150 SIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFRGVH 207
           S+   C+ A  GC+  + ++EK +H   C + P  C CP A+C + GS   +  H    H
Sbjct: 2   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 61
Query: 208 KH----AAEEFVY-----------DKVLRITLSVHHDLIILQEEKNGD----------LF 242
           K       E+ V+           D V+  +    H +++L++++  D          L 
Sbjct: 62  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 121
Query: 243 ILNNSTEPDGYRISVN 258
                 E   YR+ +N
Sbjct: 122 GTRKQAENFAYRLELN 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	6e-25
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-12
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	7e-11
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-10
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	4e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	5e-05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	5e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-04
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	1e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-04
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	3e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	7e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-04

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193

 Score = 98.7 bits (245), Expect = 6e-25
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 13/190 (6%)

Query: 147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFR 204
           V  S+   C+ A  GC+  + ++EK DH   C + P  C CP A+C + GS   +  H  
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 205 GVHK----HAAEEFVYDKVLRITLSVHHDLIILQEEKNGDLFILNNSTEPDG---YRISV 257
             HK       E+ V+             +++        + +L    + DG   +   V
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 258 NCIAPSC-KGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSD---FFGS 313
             I          Y +          + +  +SI         +   L+  +     F  
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180

Query: 314 YGQLHLGVRI 323
            G L + V I
Sbjct: 181 NGNLGINVTI 190

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 62.5 bits (152), Expect = 1e-12
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 92  PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLM----NKCPSCRLP---NGHSRSTAM 144
               +CP+C   L   V Q   GH  C  C    +    +KCP        N        
Sbjct: 16  ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 145 EKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCP 186
           ++ I S+ V C N   GC  KM      DH   C +      
Sbjct: 75  KREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALLEHH 114

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 58.6 bits (141), Expect = 7e-11
 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 20/112 (17%)

Query: 92  PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNK----CPSCRLP------------ 135
                C  C   L  P  Q   GH  C  C   +++     C +C               
Sbjct: 29  EAKYLCSACRNVLRRPF-QAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87

Query: 136 NGHSRSTAMEKVIESIQVACENADYGCKEKMSYSEKYD-HGRACHYTPCSCP 186
           +      A  + +ES+   C +   GC  K +  E    H   C        
Sbjct: 88  SSAFPDNAARREVESLPAVCPSD--GCTWKGTLKEYESCHEGRCPLMLLEHH 137

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 32/146 (21%), Positives = 42/146 (28%), Gaps = 14/146 (9%)

Query: 92  PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN----KCPSCRLP---NGHSRSTAM 144
               +CP+C   L   V Q   GH  C  C    +     KCP        N        
Sbjct: 16  ESKYECPICLMALREAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 145 EKVIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFR 204
           ++ I S+ V C N   GC  KM      DH   C +    CP   C        I  H  
Sbjct: 75  KREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHIL 130

Query: 205 GVHKHAAE--EFVYDKVLRITLSVHH 228
                     +     +      +H 
Sbjct: 131 KDCPRRQVSCDNCAASMAFEDKEIHD 156

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 95  LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN----KCPSCRLP----NGHSRSTAMEK 146
           + C +C   L  PV +    H+ C  C    +      CPSCR P    +  S   +   
Sbjct: 24  ISCQICEHILADPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82

Query: 147 VIESIQVACENADYGCKEKMSYSEKYDH 174
           ++ S+ V C      C E++S  +   H
Sbjct: 83  ILNSLMVKCPAQ--DCNEEVSLEKYNHH 108

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 93  EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN-KCPSCRLP 135
           ++L C  C   L  PV   G  H+ C  C  D +   CP C  P
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTP 64

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 90  NDPEVLDCPVCYEPLNIPVYQCGNGHVVCHRC----CCDLMNKCPSCRLPNGHS---RST 142
           +  EV  C +C E L           + C  C      +   +CP CR P          
Sbjct: 18  SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77

Query: 143 AMEKVIESIQ 152
             E+V + + 
Sbjct: 78  WAEEVTQQLD 87

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 13/52 (25%)

Query: 93  EVLDCPVCYEPLNIPVY-----QCGNGHVVCHRCCCDLMN------KCPSCR 133
           EVL+CP+C E             C  GH +C +C   L+       +CP C 
Sbjct: 14  EVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCS 63

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 83  GPVTVTLNDPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRC---CCDLMNKCPSCR 133
           G    T     V +C +C +    PV   C   HV C+ C      L  +C  CR
Sbjct: 4   GSSGNTAPSLTVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCR 56

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 93  EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLMNKCPSCRLP 135
           + L C  C      P    C   H +C  C      +CP C+ P
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCL--HTLCSGCLEASGMQCPICQAP 46

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 92  PEVLDCPVCYE-PLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLP 135
            E + C VC E  +N     CG  H VC   C   +  CP CR  
Sbjct: 16  KEAMLCMVCCEEEINSTFCPCG--HTVCCESCAAQLQSCPVCRSR 58

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 3/46 (6%)

Query: 93  EVLDCPVCYEPLNIPVYQCGNGHVVCHRC---CCDLMNKCPSCRLP 135
             + C +C   L          H  C  C        N+CP C + 
Sbjct: 14  PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIV 59

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 11/81 (13%)

Query: 93  EVLDCPVCYEPLNIPVY-QCGNGHVVCHRC---CCDLMNKCPSCR-----LPNGHSRSTA 143
             L C +C E     V   C   H  C  C         +CP CR               
Sbjct: 63  NELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNC 120

Query: 144 MEKVIESIQVACENADYGCKE 164
           + K++ ++    +        
Sbjct: 121 INKMVNNLSSEVKERRIVLIR 141

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 90  NDPEVLDCPVCYEPLNIP---VYQCGNGHVVCHRCCCDLM----NKCPSCRLP 135
              + ++CP+C EPL I     + C  G+ +C  C   +       CP+CR P
Sbjct: 7   AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 92  PEVLDCPVCYE-PLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLP 135
            E   C +C +  + I    CG  H+V  + C + ++KCP C   
Sbjct: 23  QEEKLCKICMDRNIAIVFVPCG--HLVTCKQCAEAVDKCPMCYTV 65

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 92  PEVLDCPVCYEPLNIPVY--QCGNGHVVCHRC---CCDLMNKCPSCRLP 135
            ++L C +C+E  NI +   QC   H  C  C         +CP+C + 
Sbjct: 20  DDLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVT 66

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 95  LDCPVCYEPLNIPVYQCGNGHVVCHRC---CCDLMNKCPSCRLPNGHSRSTAMEKVIESI 151
           L C +C              H  C  C     +    CP C +    +R     +  +++
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 152 Q 152
           Q
Sbjct: 76  Q 76

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 92  PEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN----KCPSCRLP 135
            +   C  C+  L  P  Q   GH  C  C   L++    KC +C+  
Sbjct: 13  EDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQES 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
2a25_A	193	Ubiquitin ligase SIAH1; protein-peptide complex, l	99.97
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.83
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.6
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.56
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.55
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.97
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.94
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.92
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.85
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.82
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.82
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.81
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.81
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.8
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.8
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.76
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.72
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.71
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.69
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.68
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.67
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.67
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.66
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.66
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.64
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.63
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.62
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.59
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.55
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.55
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.54
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.54
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.52
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.51
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.51
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.5
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.48
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.46
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.45
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.41
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.41
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.37
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.37
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.35
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.3
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.29
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.26
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.25
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.21
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.21
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.21
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.13
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.12
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.07
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.95
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.93
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.89
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.89
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.81
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.78
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.78
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.65
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.63
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.54
2yre_A	100	F-box only protein 30; zinc binding, E3 ubiquitin	97.51
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.48
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	97.48
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.39
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.97
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.86
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	95.58
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.54
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	94.06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	93.76
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	92.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	91.21
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	90.61
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	89.17
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.12
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	88.32
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	85.15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	84.38
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	83.38
2cup_A	101	Skeletal muscle LIM-protein 1; four and half LIM d	80.4

>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A

Probab=99.97  E-value=7.5e-33  Score=245.47  Aligned_cols=177  Identities=22%  Similarity=0.369  Sum_probs=103.2

Q ss_pred             hhhceeeecccCCCCCCcccccchhhhcccccccCCCCCCCCC--CccccccchHhhhhhhccCCCceEEEeCcEEEEEE
Q 020290          147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAA--CNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITL  224 (328)
Q Consensus       147 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~g--C~~~g~~~~L~~Hl~~~H~~~~~~f~y~~~~~l~l  224 (328)
                      ++++++++|+|+.+||++.++|.++..||+.|.|+|+.||.++  |+|.|+.++|..|+...|+|..+. .......+..
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~-~g~~i~f~~~   79 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTL-QGEDIVFLAT   79 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEE-ESSEEEEEEE
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCccee-cCceEEEEec
Confidence            4678999999999999999999999999999999999999976  999999999999999999995432 1111111122


Q ss_pred             ----ecCCCEEEEEEecCCcEEEEeccc--CCCcc---EEEEEccCCC-CCCCeeEEEEEeeCCceEEEeeeeccccccc
Q 020290          225 ----SVHHDLIILQEEKNGDLFILNNST--EPDGY---RISVNCIAPS-CKGGVVYSIVAKSGGAVYEFNSCTKSIQNWD  294 (328)
Q Consensus       225 ----~~~~~~~vl~~~~d~~lFll~~~~--~~~g~---~vsV~cIgp~-~a~~f~Y~l~~~~~g~~L~~~s~~~si~~~~  294 (328)
                          +.+.+|++++.+ ++..|+|+...  .+.|.   +|+|+||||. ++.+|+|+|++.+++++|+|+++++++++..
T Consensus        80 ~~~l~~~~~~~~v~~~-~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~  158 (193)
T 2a25_A           80 DINLPGAVDWVMMQSC-FGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGI  158 (193)
T ss_dssp             CCC----CEEEEEEEE-TTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCS
T ss_pred             ccccccceeEEEEEEe-cCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcc
Confidence                223378877765 56777776543  34553   6899999994 5789999999999999999999999987522


Q ss_pred             CCCCCCcceeEecCC---ccCCCCceEEEEEEec
Q 020290          295 ENNPPSVASLLVPSD---FFGSYGQLHLGVRIQH  325 (328)
Q Consensus       295 ~~~~~~~~fL~VP~~---l~~~~g~l~l~V~I~~  325 (328)
                      ....++.+||+||..   +|.++|+|+|+|+|++
T Consensus       159 ~~~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~  192 (193)
T 2a25_A          159 ATAIMNSDCLVFDTSIAQLFAENGNLGINVTISM  192 (193)
T ss_dssp             HHHHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEE
T ss_pred             cccccCCCEEEEcHHHHHhhcCCCeEEEEEEEEe
Confidence            233577899999965   3677789999999986

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.3e-21  Score=169.45  Aligned_cols=120  Identities=25%  Similarity=0.412  Sum_probs=106.9

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhceeeecccCCCCC
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQVACENADYGC  162 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~v~C~~~~~GC  162 (328)
                      ..+.|.||||+++|.+|+. .|  ||+||..|+.++    ...||.|+.++..   .++.++++++.++.|.|+|  .||
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n--~GC   90 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPC--GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGC   90 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCS--TTC
T ss_pred             CCCCCCCCCCChhhcCcEECCC--CCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcccCCCC--CCC
Confidence            3457999999999999987 67  999999999986    2489999999864   4788999999999999998  599


Q ss_pred             CcccccchhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCCCceEEEe
Q 020290          163 KEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVY  216 (328)
Q Consensus       163 ~~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y  216 (328)
                      +|.+++.++..|++.|+|+++.||  +|++.+.+.+|..|+...+..+.....|
T Consensus        91 ~~~~~~~~l~~H~~~C~~~~v~C~--~C~~~~~r~~l~~H~~~~C~~r~~~C~~  142 (170)
T 3hcs_A           91 LHKMELRHLEDHQAHCEFALMDCP--QCQRPFQKFHINIHILKDCPRRQVSCDN  142 (170)
T ss_dssp             CCEEEGGGHHHHHTTCTTSEEECT--TTCCEEEGGGHHHHHHHTCTTCEEECTT
T ss_pred             CceecHhHHHHHHhcCCceeeECC--CCChHHHHHHHHHHhhhhCCCCCeECCC
Confidence            999999999999999999999998  7999999999999998887777666554

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.60  E-value=4e-16  Score=127.03  Aligned_cols=87  Identities=29%  Similarity=0.551  Sum_probs=76.3

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccc---c-CCCCCCCcCCCC---CcchhhHHhhhceeeecccCCCCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---M-NKCPSCRLPNGH---SRSTAMEKVIESIQVACENADYGCK  163 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~-~~CP~C~~~~~~---~r~~~le~~l~~l~v~C~~~~~GC~  163 (328)
                      .+.+.|+||++++..|+. .|  ||+||..|+.++   . ..||.|+.++..   .++..+++++.++++.|+|  .||+
T Consensus        16 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n--~gC~   91 (118)
T 3hct_A           16 ESKYECPICLMALREAVQTPC--GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCL   91 (118)
T ss_dssp             CGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEECSS--TTCC
T ss_pred             CCCCCCCcCChhhcCeEECCc--CChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeECCC--CCCC
Confidence            456899999999999987 88  999999999986   2 489999999864   3678899999999999997  7999


Q ss_pred             cccccchhhhcccccccCC
Q 020290          164 EKMSYSEKYDHGRACHYTP  182 (328)
Q Consensus       164 ~~~~~~~~~~He~~C~~~~  182 (328)
                      |.+++.++..|+++|.+..
T Consensus        92 ~~~~~~~l~~H~~~c~~~~  110 (118)
T 3hct_A           92 HKMELRHLEDHQAHCEFAL  110 (118)
T ss_dssp             CEEEGGGSGGGTSSSCC--
T ss_pred             CEEeeHHHHHHHHHchhhh
Confidence            9999999999999988753

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.56  E-value=8.3e-16  Score=124.58  Aligned_cols=85  Identities=27%  Similarity=0.576  Sum_probs=75.1

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC----CcchhhHHhhhceeeecccCCCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH----SRSTAMEKVIESIQVACENADYGCK  163 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~----~r~~~le~~l~~l~v~C~~~~~GC~  163 (328)
                      +.+.||||++++.+|+. .|  ||+||..|+.++    ...||.|+.++..    ..+..+.+++..+.+.|+|.  ||+
T Consensus        22 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~--gC~   97 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSC--KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ--DCN   97 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST--TCC
T ss_pred             CCCCCCCCCcHhcCcEEcCC--CCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC--CCc
Confidence            35899999999999987 88  999999999986    3579999999863    34667889999999999995  999


Q ss_pred             cccccchhhhcccccccC
Q 020290          164 EKMSYSEKYDHGRACHYT  181 (328)
Q Consensus       164 ~~~~~~~~~~He~~C~~~  181 (328)
                      |.+++.++..|+++|.+.
T Consensus        98 ~~~~~~~~~~H~~~C~~~  115 (116)
T 1rmd_A           98 EEVSLEKYNHHVSSHKES  115 (116)
T ss_dssp             CEEEHHHHHHHHHTSCCC
T ss_pred             chhhHhHHHHHHHHhhcc
Confidence            999999999999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.55  E-value=4e-16  Score=131.22  Aligned_cols=85  Identities=26%  Similarity=0.532  Sum_probs=73.7

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC------------CcchhhHHhhhceeee
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH------------SRSTAMEKVIESIQVA  154 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~------------~r~~~le~~l~~l~v~  154 (328)
                      .+.|.|+||+++|.+|+. .|  ||+||..|+.++.    ..||.|+.++..            .++..+++++.++.|.
T Consensus        29 ~~~~~C~IC~~~~~~pv~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v~  106 (141)
T 3knv_A           29 EAKYLCSACRNVLRRPFQAQC--GHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAV  106 (141)
T ss_dssp             CGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEEE
T ss_pred             CcCcCCCCCChhhcCcEECCC--CCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccccc
Confidence            457999999999999987 78  9999999999872    389999987521            2677889999999999


Q ss_pred             cccCCCCCCcccccchhhh-ccccccc
Q 020290          155 CENADYGCKEKMSYSEKYD-HGRACHY  180 (328)
Q Consensus       155 C~~~~~GC~~~~~~~~~~~-He~~C~~  180 (328)
                      |+|  .||.|.+.+.+++. |+..|.-
T Consensus       107 Cpn--~GC~~~~~l~~l~~~H~~~~~~  131 (141)
T 3knv_A          107 CPS--DGCTWKGTLKEYESCHEGRCPL  131 (141)
T ss_dssp             CCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred             cCC--CCCCCEeEHHHHHHHHHHHhHH
Confidence            999  69999999999998 9988764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.97  E-value=2.2e-10  Score=90.19  Aligned_cols=62  Identities=15%  Similarity=0.072  Sum_probs=52.5

Q ss_pred             CCCCeeeecccccccccccc-ccccc-cEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhceee
Q 020290           90 NDPEVLDCPVCYEPLNIPVY-QCGNG-HVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQV  153 (328)
Q Consensus        90 ~~~~~l~CpiC~~~l~~Pv~-qC~~G-H~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~v  153 (328)
                      ..++.|.||||+++|++||. .|  | |+||..||.++   ...||.|++++..   .+|..|++++..+..
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~c--G~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~   87 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPS--SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA   87 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTT--TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred             cCcHhcCCcCccccccCCeECCC--CCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence            35678999999999999998 88  9 99999999986   3589999998863   578888888887653

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.94  E-value=1.7e-10  Score=86.28  Aligned_cols=60  Identities=20%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      .++.+.||||+++|.+|+. .|  ||+||..|+.++    ...||.|+.++..   .+|..|+++++.+.
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~C--gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             CcccCCCCCccccccCCEEcCC--CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence            3567899999999999988 88  999999999986    2479999998853   46888888887654

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.92  E-value=2.8e-10  Score=87.86  Aligned_cols=63  Identities=19%  Similarity=0.556  Sum_probs=51.6

Q ss_pred             CCeeeecccccccccccc-c-cccccEeccccccccc-----CCCCCCCcCCC----CCcchhhHHhhhceeeecc
Q 020290           92 PEVLDCPVCYEPLNIPVY-Q-CGNGHVVCHRCCCDLM-----NKCPSCRLPNG----HSRSTAMEKVIESIQVACE  156 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-q-C~~GH~~C~~C~~~~~-----~~CP~C~~~~~----~~r~~~le~~l~~l~v~C~  156 (328)
                      .+.+.||||+++|.+|+. . |  ||+||..|+.++.     ..||.|+..+.    ...|..++++++.+.....
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTT--CCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             CcCCCCCCCChhhcCceECCCC--CCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            456899999999999988 6 8  9999999998862     48999999873    3568888888887765443

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=7.7e-10  Score=83.48  Aligned_cols=55  Identities=29%  Similarity=0.793  Sum_probs=43.8

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccc---------cCCCCCCCcCCCC---CcchhhHHhh
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---------MNKCPSCRLPNGH---SRSTAMEKVI  148 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---------~~~CP~C~~~~~~---~r~~~le~~l  148 (328)
                      .+.+.|+||++.+..|+. .|  ||.||..|+.++         ...||.|+..+..   .+|..+++++
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDC--GHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSS--SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             cCCCCCCCCCcccCCceeCCC--CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            346899999999999987 88  999999999875         3589999998763   3455555443

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.85  E-value=6.6e-10  Score=85.07  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=51.1

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      .++.|.||||+++|++||. .|  ||+||..|+.++   ...||.|+.++..   .+|..|++++..+.
T Consensus        11 ~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVRLPS--GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             CchheECcccCchhcCCeECCC--CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence            4667999999999999998 88  999999999986   4689999998863   57888888887653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=1.9e-09  Score=81.20  Aligned_cols=43  Identities=28%  Similarity=0.787  Sum_probs=38.3

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +.+.|+||++.+..|+. .|  ||+||..|+.+|   ...||.|+.++.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKC--RHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTT--SCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCeeEccC--CCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            45799999999999987 89  999999999987   368999999875

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.1e-09  Score=79.11  Aligned_cols=45  Identities=36%  Similarity=0.874  Sum_probs=38.8

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccccc------CCCCCCCcCCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM------NKCPSCRLPNGH  138 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C~~~~~~  138 (328)
                      .+.+.|+||++.+..|+. .|  ||.||..|+.+|.      ..||.|+..+..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTT--CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCC--CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            456899999999999987 88  9999999999873      279999998753

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.81  E-value=8.1e-10  Score=82.53  Aligned_cols=54  Identities=28%  Similarity=0.781  Sum_probs=42.9

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccc----------cCCCCCCCcCCCC---CcchhhHHh
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----------MNKCPSCRLPNGH---SRSTAMEKV  147 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----------~~~CP~C~~~~~~---~r~~~le~~  147 (328)
                      .+.+.|+||++.+..|+. .|  ||.||..|+.++          ...||.|+..+..   .+|..++++
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDC--GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSS--SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             ccCCCCcCCCcccCCeeECCC--CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            346899999999999987 88  999999999975          2479999998863   345555444

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.81  E-value=1.9e-09  Score=75.83  Aligned_cols=45  Identities=27%  Similarity=0.595  Sum_probs=39.9

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccccCCCCCCCcCCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLMNKCPSCRLPNGH  138 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~~~CP~C~~~~~~  138 (328)
                      .+.+.|+||++.+..|+. .|  ||+||..|+.++...||.|++.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~C--gH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCC--CCcccHHHHccCCCCCCcCCcEeec
Confidence            456889999999999987 99  9999999998877799999998753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.80  E-value=1.1e-09  Score=86.45  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      .++.|.||||+++|++||. .|  ||+||..|+.++   ...||.|+.++..   .+|..|++++..+.
T Consensus        26 ~p~~~~CpI~~~~m~dPV~~~c--Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDPVRLPS--GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             CSTTTBCTTTCSBCSSEEEETT--TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred             CcHhhCCcCccCcccCCeECCC--CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence            4678999999999999998 89  999999999986   3689999998863   57888888887654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.80  E-value=9.6e-10  Score=82.94  Aligned_cols=55  Identities=31%  Similarity=0.778  Sum_probs=43.4

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccc---------cCCCCCCCcCCCC---CcchhhHHhh
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---------MNKCPSCRLPNGH---SRSTAMEKVI  148 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---------~~~CP~C~~~~~~---~r~~~le~~l  148 (328)
                      .+.+.|+||++.+..|+. .|  ||.||..|+.++         ...||.|+..+..   .+|..+++++
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADC--NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTT--SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             ccCCCCcCCChhhCcceeCCC--CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            346899999999999987 88  999999999875         3479999998763   3455555443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.76  E-value=1.4e-09  Score=88.65  Aligned_cols=57  Identities=28%  Similarity=0.682  Sum_probs=47.7

Q ss_pred             Ceeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC----CcchhhHHhhhce
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH----SRSTAMEKVIESI  151 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~----~r~~~le~~l~~l  151 (328)
                      +.+.||||++++.+|+. .|  ||+||..|+..+.    ..||.|+.++..    .+|..+.+++..+
T Consensus        51 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~  116 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVC--QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL  116 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred             cCCCCCcCChHHcCcEEeeC--CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence            45899999999999987 89  9999999998862    389999998854    4677888877654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.72  E-value=1.6e-09  Score=84.78  Aligned_cols=58  Identities=26%  Similarity=0.774  Sum_probs=48.5

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      +.+.|+||++.+.+|+.  .|  ||.||..|+.++   ...||.|+..+..   .+|..++++++.++
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~   86 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQC--SHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLN   86 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             CCCCcccCChhhCCcCEECCC--CCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            45899999999999975  68  999999999986   3589999998863   46888888887664

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.71  E-value=2.1e-09  Score=89.48  Aligned_cols=43  Identities=30%  Similarity=0.658  Sum_probs=38.3

Q ss_pred             eeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      .+.|+||++.+.+|+. .|  ||.||..|+.+|   ...||.||.++..
T Consensus        53 ~~~C~iC~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETT--SCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCCceECCC--CCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            4789999999999987 89  999999999987   3689999998864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=7.6e-09  Score=75.96  Aligned_cols=43  Identities=30%  Similarity=0.689  Sum_probs=37.8

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +.+.|+||++.+..|+. .|  ||.||..|+.+|   ...||.|+..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPC--KHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETT--TEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCccCCcccCCCEEccC--CCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            45789999999999987 89  999999999986   368999998875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.68  E-value=3.2e-09  Score=89.83  Aligned_cols=58  Identities=26%  Similarity=0.592  Sum_probs=48.7

Q ss_pred             Ceeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC----CcchhhHHhhhcee
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH----SRSTAMEKVIESIQ  152 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~----~r~~~le~~l~~l~  152 (328)
                      +.+.|+||++++.+|+. .|  ||+||..|+.++.    ..||.|+.++..    .+|..+++++..+.
T Consensus        77 ~~~~C~IC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTEC--FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTT--SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred             cCCEeecCChhhcCCEEcCC--CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence            45899999999999987 89  9999999999862    379999998864    46888888887654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=1e-08  Score=75.50  Aligned_cols=44  Identities=25%  Similarity=0.631  Sum_probs=38.6

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+.+|+.  .|  ||.||..|+.+|   ...||.|+..+..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           14 PYILCSICKGYLIDATTITEC--LHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             GGGSCTTTSSCCSSCEECSSS--CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCCCCCCCChHHHCcCEECCC--CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            46899999999999976  78  999999999986   4689999998764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.67  E-value=3e-09  Score=83.65  Aligned_cols=55  Identities=29%  Similarity=0.646  Sum_probs=43.4

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc---c-CCCCCCCcCCCC---CcchhhHHhhh
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---M-NKCPSCRLPNGH---SRSTAMEKVIE  149 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~-~~CP~C~~~~~~---~r~~~le~~l~  149 (328)
                      +.+.|+||++++..|+.  .|  ||+||..|+.+|   . ..||.||.++..   .+++.++.++.
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~   84 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHC--SKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ   84 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTT--CCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred             CCCCCccCCccccCccccCCC--CChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence            46899999999999976  78  999999999987   3 589999998853   34555544433

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=6.8e-09  Score=75.06  Aligned_cols=45  Identities=29%  Similarity=0.688  Sum_probs=39.0

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNGH  138 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~~  138 (328)
                      .+.+.|+||++.+..|+. .|  ||+||..|+.++.    ..||.|+..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTEC--GHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSS--SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCC--CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            456899999999999987 88  9999999999862    579999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.66  E-value=7.2e-09  Score=83.68  Aligned_cols=57  Identities=28%  Similarity=0.698  Sum_probs=47.0

Q ss_pred             Ceeeecccccccccccc--ccccccEeccccccccc-CCCCCCCcCCCC---CcchhhHHhhhce
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDLM-NKCPSCRLPNGH---SRSTAMEKVIESI  151 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~~-~~CP~C~~~~~~---~r~~~le~~l~~l  151 (328)
                      +.+.||||++++..|+.  .|  ||+||..|+..+. ..||.|+.++..   .+|..+.+++..+
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~C--gH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~   83 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGC--EHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSS--SCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             hCCCCCCCChHhhCccEeCCC--CCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHH
Confidence            46899999999999986  58  9999999999874 589999998752   4577777777654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.65  E-value=5.8e-09  Score=82.92  Aligned_cols=58  Identities=17%  Similarity=0.455  Sum_probs=47.0

Q ss_pred             CCeeeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCCC-------CcchhhHHhhhce
Q 020290           92 PEVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH-------SRSTAMEKVIESI  151 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~-------~r~~~le~~l~~l  151 (328)
                      .+.+.|+||++++.+|+.  .|  ||+||..|+.++   ...||.|+..+..       ..|..+.+++..+
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~   82 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIEC--LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL   82 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred             CCcCCCccCChHHhCcCEeCCC--CChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence            346899999999999986  78  999999999987   3689999998763       2466777777654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.64  E-value=8.9e-09  Score=94.31  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      .++.|.||||+++|.+||. .|  ||+||..|+.++    ...||.|+.++..   .+|..|++++..+.
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~--gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~  272 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI  272 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCcccCCcCcCCHhcCCeECCC--CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence            5677999999999999998 89  999999999986    2349999999863   57888988887664

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.63  E-value=9.4e-09  Score=76.19  Aligned_cols=44  Identities=27%  Similarity=0.771  Sum_probs=38.0

Q ss_pred             CCeeeecccccccccccc-c-cccccEeccccccccc-----CCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-Q-CGNGHVVCHRCCCDLM-----NKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-q-C~~GH~~C~~C~~~~~-----~~CP~C~~~~~  137 (328)
                      .+.+.|+||++++.+|+. . |  ||+||..|+.+|.     ..||.|++++.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCC--GNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSS--CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCcCCChHHhCCeEcCCC--CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            456899999999999987 6 9  9999999999872     48999998753

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=1e-08  Score=73.31  Aligned_cols=39  Identities=41%  Similarity=1.015  Sum_probs=33.8

Q ss_pred             CCeeeecccccccccccc-ccccccEeccccccccc------CCCCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM------NKCPSC  132 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C  132 (328)
                      .+.+.|+||++.+.+|+. .|  ||+||..|+.+|.      ..||.|
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDC--GHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTT--SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeEEeCC--CCcchHHHHHHHHHcCCCCCcCcCC
Confidence            356899999999999987 88  9999999999862      379987

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=8.9e-09  Score=80.14  Aligned_cols=59  Identities=24%  Similarity=0.535  Sum_probs=48.0

Q ss_pred             CCeeeecccccccccccc-c-cccccEeccccccccc---------CCCCC--CCcC-CC---CCcchhhHHhhhcee
Q 020290           92 PEVLDCPVCYEPLNIPVY-Q-CGNGHVVCHRCCCDLM---------NKCPS--CRLP-NG---HSRSTAMEKVIESIQ  152 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-q-C~~GH~~C~~C~~~~~---------~~CP~--C~~~-~~---~~r~~~le~~l~~l~  152 (328)
                      .+.|.||||+++|.+||. . |  ||+||..||.++.         ..||.  |+.. +.   ..+|..|++++..+.
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~c--Gh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~   80 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVC--GHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN   80 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSS--CCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred             CcEeECcCcCchhcCCEEcCCC--CCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence            356899999999999998 4 8  9999999999862         28999  8765 53   357888888887764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.55  E-value=1.3e-08  Score=74.24  Aligned_cols=45  Identities=38%  Similarity=0.940  Sum_probs=38.2

Q ss_pred             CCeeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           92 PEVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      .+.+.|+||++.+..|       +. .|  ||.||..|+.+|   ...||.||..+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCC--CChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            3468899999999987       54 78  999999999987   4689999998763

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=2e-08  Score=72.74  Aligned_cols=44  Identities=36%  Similarity=0.916  Sum_probs=37.5

Q ss_pred             CCeeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      .+.+.|+||++.+..|       +. .|  ||.||..|+.+|   ...||.|+.++.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSS--SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCC--CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            3467899999999887       54 79  999999999987   368999998875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.54  E-value=1e-08  Score=81.67  Aligned_cols=55  Identities=33%  Similarity=0.882  Sum_probs=42.8

Q ss_pred             eeeecccccccccccc-ccccccEeccccccccc------CCCCCCCcCCCC---CcchhhHHhhhc
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM------NKCPSCRLPNGH---SRSTAMEKVIES  150 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~------~~CP~C~~~~~~---~r~~~le~~l~~  150 (328)
                      .+.|+||++.+..|+. .|  ||.||..|+.++.      ..||.|+.++..   .++..++++++.
T Consensus        21 ~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~   85 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEE   85 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHH
T ss_pred             CCCCcccChhhcCeEECCC--CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHH
Confidence            5789999999999987 88  9999999999862      279999998763   344444444443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.54  E-value=1.5e-08  Score=81.42  Aligned_cols=43  Identities=33%  Similarity=0.719  Sum_probs=38.1

Q ss_pred             Ceeeecccccccccccc-ccccccEeccccccccc----CCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLM----NKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~----~~CP~C~~~~~  137 (328)
                      +.+.|+||++.+..|+. .|  ||+||..|+.++.    ..||.|+..+.
T Consensus        14 ~~~~C~iC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPC--NHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTT--SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCccCCcccCceeEcCC--CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            46899999999999987 89  9999999999862    47999999875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.52  E-value=2.1e-08  Score=75.44  Aligned_cols=47  Identities=32%  Similarity=0.851  Sum_probs=36.8

Q ss_pred             CCeeeecccccccc--cccc-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290           92 PEVLDCPVCYEPLN--IPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH  138 (328)
Q Consensus        92 ~~~l~CpiC~~~l~--~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~  138 (328)
                      .+.+.||||++++.  ++.+ .|++||.||..|+.++    ...||.||+++..
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            45689999999985  4455 5444999999999886    2589999998763

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=6.8e-09  Score=77.26  Aligned_cols=43  Identities=30%  Similarity=0.756  Sum_probs=38.3

Q ss_pred             Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+.+|++ .|  ||. ||..|+.++ ..||.||.++..
T Consensus        24 ~~~~C~IC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSS--CCCCBCHHHHHHC-SBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCEEEecC--CCHHHHHHHhhCC-CCCccCCceecC
Confidence            35789999999999998 99  999 999999876 689999998764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.51  E-value=2.5e-08  Score=86.62  Aligned_cols=60  Identities=20%  Similarity=0.242  Sum_probs=50.9

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc---c-CCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---M-NKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~-~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      .++.|.||||+++|.+||. .|  ||+||..|+.++   . ..||.|+.++..   .+|..|.+++..+.
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~--Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred             CcHhhcccCccccCCCCeECCC--CCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence            4678999999999999998 88  999999999986   1 359999998863   57888888887664

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.50  E-value=2.2e-08  Score=85.58  Aligned_cols=59  Identities=25%  Similarity=0.586  Sum_probs=48.0

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc----cCCCCCCCcCCCC----CcchhhHHhhhceee
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH----SRSTAMEKVIESIQV  153 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~----~r~~~le~~l~~l~v  153 (328)
                      +.+.|+||++.+.+|+.  .|  ||+||..|+.+|    ...||.|+.++..    ..|..+++++..+.-
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKEC--LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTT--CCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             CCCCCcccChHhhCcCEeCCC--CChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            46899999999999976  67  999999999987    3569999998853    357778888877644

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.48  E-value=2.2e-08  Score=72.14  Aligned_cols=44  Identities=32%  Similarity=0.793  Sum_probs=36.9

Q ss_pred             Ceeeeccccc-cccccc----c-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYE-PLNIPV----Y-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~-~l~~Pv----~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~  138 (328)
                      +.+.||||++ .+..|+    . .|  ||+||..|+.++    ...||.|+.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCC--CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            4578999999 898883    3 79  999999999987    2579999998763

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.46  E-value=2.8e-08  Score=70.83  Aligned_cols=43  Identities=40%  Similarity=0.999  Sum_probs=36.7

Q ss_pred             eeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      .+.|+||++.+..|       +. .|  ||.||..|+.+|   ...||.|+.++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETT--SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCC--CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            47899999999887       44 78  999999999987   3689999998763

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=3.7e-08  Score=74.84  Aligned_cols=44  Identities=39%  Similarity=0.991  Sum_probs=37.8

Q ss_pred             CCeeeeccccccccc----ccc-ccccccEecccccccc---c---CCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNI----PVY-QCGNGHVVCHRCCCDL---M---NKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~----Pv~-qC~~GH~~C~~C~~~~---~---~~CP~C~~~~~  137 (328)
                      .+.+.|+||++.+..    |+. .|  ||.||..|+.+|   .   ..||.|+..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHC--GHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSS--SCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             cCCCCCccCCccccccCCCeEECCC--CChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            346889999999998    876 89  999999999987   2   58999999865

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.41  E-value=3.9e-08  Score=73.02  Aligned_cols=43  Identities=30%  Similarity=0.756  Sum_probs=38.6

Q ss_pred             Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+.+|++ .|  ||. ||..|+.++ ..||.||.++..
T Consensus        23 ~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPC--GHLVTCKQCAEAV-DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETT--CCBCCCHHHHTTC-SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEcCC--CChhHHHHhhhcC-ccCCCcCcCccC
Confidence            35789999999999988 99  999 999999998 799999998753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=2.1e-07  Score=69.17  Aligned_cols=44  Identities=30%  Similarity=0.705  Sum_probs=36.1

Q ss_pred             Ceeeeccccccccccc----cccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPV----YQCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv----~qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+..+.    ..|  ||.||..|+.+|   ...||.||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPC--NHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTT--SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCC--CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            3578999999997652    268  999999999987   3689999998763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.37  E-value=1.4e-07  Score=65.30  Aligned_cols=43  Identities=28%  Similarity=0.807  Sum_probs=35.1

Q ss_pred             Ceeeeccccccccc----ccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNI----PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~----Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +...|+||++.+..    ++. .|  ||.||..|+.+|   ...||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPC--GHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTT--SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCC--CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            34689999999865    444 89  999999999987   368999998763

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=9e-08  Score=66.89  Aligned_cols=38  Identities=39%  Similarity=0.896  Sum_probs=33.1

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc------cCCCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL------MNKCPSC  132 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~------~~~CP~C  132 (328)
                      +.+.|+||++.+.+|+. .|  ||+||..|+.++      ...||.|
T Consensus        14 ~~~~C~IC~~~~~~p~~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVIIEC--GHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCCCSS--CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEeCCC--CCccCHHHHHHHHHhcCCCCCCCCC
Confidence            46889999999999987 89  999999999987      1478887

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.35  E-value=1.7e-07  Score=67.72  Aligned_cols=42  Identities=29%  Similarity=0.711  Sum_probs=36.2

Q ss_pred             eeeecccccccccc-cc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIP-VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~P-v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      ...|+||++.+.+| +. .|  ||.||..|+.+|   ...||.|+.++.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCeeCCccccCCcEecCC--CCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            45799999999987 44 89  999999999986   478999999875

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.30  E-value=2.5e-07  Score=64.04  Aligned_cols=42  Identities=31%  Similarity=0.691  Sum_probs=34.5

Q ss_pred             eeeeccccccccc---ccc-c-cccccEecccccccc---cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNI---PVY-Q-CGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~---Pv~-q-C~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      ...|+||++.+..   ++. . |  ||.||..|+.+|   ...||.||.++.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C--~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCC--CCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4689999999976   443 4 8  999999999987   368999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=2.8e-07  Score=68.12  Aligned_cols=43  Identities=28%  Similarity=0.594  Sum_probs=36.3

Q ss_pred             Ceeeecccccccccc---cc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIP---VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~P---v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +...|+||++.+..+   +. .|  ||.||..|+.+|   ...||.||..+.
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPC--NHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETT--TEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECC--CCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            457899999999876   33 78  999999999987   468999998875

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=1e-07  Score=69.48  Aligned_cols=43  Identities=26%  Similarity=0.706  Sum_probs=36.8

Q ss_pred             Ceeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+.+ +. .|  ||.||..|+.+|   ...||.||.++..
T Consensus        14 ~~~~C~IC~~~~~~-~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           14 DEEECCICMDGRAD-LILPC--AHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCSSSCCSCCS-EEETT--TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             CCCCCeeCCcCccC-cccCC--CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            45789999999988 55 89  999999999986   3689999988753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=5.5e-07  Score=65.76  Aligned_cols=43  Identities=30%  Similarity=0.633  Sum_probs=37.9

Q ss_pred             Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~  138 (328)
                      +...|+||++...++++ .|  ||. +|..|...+ ..||.||.++..
T Consensus        14 ~~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPC--RHTCLCDGCVKYF-QQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTT--TBCCSCTTHHHHC-SSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCCEEEECC--CChhhhHHHHhcC-CCCCCCCcchhc
Confidence            45689999999999988 99  999 999999876 689999998763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.21  E-value=2.2e-07  Score=75.47  Aligned_cols=44  Identities=39%  Similarity=0.958  Sum_probs=38.3

Q ss_pred             Ceeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+..|       +. .|  ||+||..|+.+|   ...||.|++.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETT--CCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCC--CChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            468999999999988       65 89  999999999987   3689999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=6.5e-07  Score=65.83  Aligned_cols=44  Identities=25%  Similarity=0.531  Sum_probs=36.2

Q ss_pred             Ceeeecccccccccccc----ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY----QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~----qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +...|+||++.+..+..    .|  ||.||..|+.+|   ...||.||.++..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C--~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPC--KHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETT--TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCcCCCcccCCCCcEEEcCC--CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            35689999999986632    67  999999999987   3689999998754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.21  E-value=3.6e-07  Score=66.26  Aligned_cols=43  Identities=26%  Similarity=0.546  Sum_probs=34.7

Q ss_pred             eeeeccccccccc---ccc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNI---PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~---Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      ...|+||++.+..   ++. .|  ||.||..|+.+|   ...||.||..+..
T Consensus        14 ~~~C~IC~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           14 EEKCTICLSILEEGEDVRRLPC--MHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CCSBTTTTBCCCSSSCEEECTT--SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCeeCCccccCCCcEEEeCC--CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            4689999998853   333 78  999999999987   4689999988753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.13  E-value=5.5e-07  Score=69.33  Aligned_cols=43  Identities=23%  Similarity=0.549  Sum_probs=35.4

Q ss_pred             Ceeeeccccccccc---ccc-ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNI---PVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~---Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +...|+||++.+..   ++. .|  ||.||..|+.+|   ...||.||..+.
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~C--~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELPC--HHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEETT--TEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCCcccChhhcCCCcEEecCC--CChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            35789999998875   443 78  999999999987   368999998764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.12  E-value=3e-07  Score=83.94  Aligned_cols=58  Identities=24%  Similarity=0.500  Sum_probs=46.9

Q ss_pred             CCeeeecccccccccccc--ccccccEeccccccccc-----CCCCC--CCcCCCC---CcchhhHHhhhce
Q 020290           92 PEVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDLM-----NKCPS--CRLPNGH---SRSTAMEKVIESI  151 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~~-----~~CP~--C~~~~~~---~r~~~le~~l~~l  151 (328)
                      ...+.||||+++|++||.  .|  ||+||..|+..+.     ..||.  |++.+..   .+|..|.+++..+
T Consensus       179 ~~el~CPIcl~~f~DPVts~~C--GHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~  248 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKC--NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA  248 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSS--CCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred             ceeeECcCccCcccCCeeeCCC--CCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence            446899999999999996  79  9999999999862     36999  9987653   4677777777653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.09  E-value=5e-07  Score=67.94  Aligned_cols=41  Identities=34%  Similarity=0.851  Sum_probs=37.2

Q ss_pred             eeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~  137 (328)
                      ...|+||++.+.+|++ .|  ||. ||..|..++ ..||.||.++.
T Consensus        18 ~~~C~IC~~~~~~~v~~pC--gH~~~C~~C~~~~-~~CP~Cr~~i~   60 (79)
T 2yho_A           18 AMLCMVCCEEEINSTFCPC--GHTVCCESCAAQL-QSCPVCRSRVE   60 (79)
T ss_dssp             HTBCTTTSSSBCCEEEETT--CBCCBCHHHHTTC-SBCTTTCCBCC
T ss_pred             CCEeEEeCcccCcEEEECC--CCHHHHHHHHHhc-CcCCCCCchhh
Confidence            4689999999999998 89  999 999999987 58999999876

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.07  E-value=9.7e-07  Score=70.41  Aligned_cols=44  Identities=30%  Similarity=0.702  Sum_probs=35.7

Q ss_pred             Ceeeeccccccccccc------------------c-ccccccEeccccccccc--------CCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPV------------------Y-QCGNGHVVCHRCCCDLM--------NKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv------------------~-qC~~GH~~C~~C~~~~~--------~~CP~C~~~~~~  138 (328)
                      ....|+||++.|..|.                  . .|  ||.||..|+.+|.        ..||.||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCC--CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3468999999997653                  3 68  9999999999862        479999988753

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.95  E-value=1.9e-06  Score=62.05  Aligned_cols=43  Identities=28%  Similarity=0.695  Sum_probs=36.7

Q ss_pred             Ceeeecccccccccccc---ccccccE-eccccccccc---CCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIPVY---QCGNGHV-VCHRCCCDLM---NKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~---qC~~GH~-~C~~C~~~~~---~~CP~C~~~~~  137 (328)
                      +...|+||++...++++   .|  ||. +|..|..++.   ..||.||+++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKT--GHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTE--EEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCEEEECCCC--CChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            45689999999999875   68  999 8999999873   57999999875

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.93  E-value=3.5e-06  Score=80.35  Aligned_cols=43  Identities=40%  Similarity=0.832  Sum_probs=38.7

Q ss_pred             Ceeeecccccccccccc-ccccccE-ecccccccccCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNIPVY-QCGNGHV-VCHRCCCDLMNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~~GH~-~C~~C~~~~~~~CP~C~~~~~~  138 (328)
                      +.+.|+||++.+..|++ .|  ||. ||..|+..+ ..||.||.++..
T Consensus       294 ~~~~C~IC~~~~~~~v~lpC--gH~~fC~~C~~~~-~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPC--GHLVVCQECAPSL-RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETT--CCEEECTTTGGGC-SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCceEEcCC--CChhHhHHHHhcC-CcCCCCCCCccC
Confidence            35889999999999998 89  999 999999998 789999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=3.6e-06  Score=63.30  Aligned_cols=45  Identities=27%  Similarity=0.526  Sum_probs=35.4

Q ss_pred             CCCeeeecccccccccc--------------cc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           91 DPEVLDCPVCYEPLNIP--------------VY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~P--------------v~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +.+.-.|+||++.|..+              +.  .|  ||.|+..|+.+|   ...||.||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGEC--NHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETT--SCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             cCCCCCCcccChhhhccCcccccccCCCceEEEeCCC--CCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            44556799999998663              23  48  999999999987   368999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.89  E-value=4.2e-06  Score=67.78  Aligned_cols=46  Identities=37%  Similarity=0.920  Sum_probs=38.6

Q ss_pred             CCCeeeecccccccccc-------cc-ccccccEecccccccc---cCCCCCCCcCCCC
Q 020290           91 DPEVLDCPVCYEPLNIP-------VY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH  138 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~P-------v~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~  138 (328)
                      +.+.+.|+||++.+..|       +. .|  ||.||..|+.+|   ...||.||..+..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~C--gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTEC--GHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETT--SBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCC--CChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            45678899999999886       44 68  999999999987   4789999988753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.81  E-value=5.2e-06  Score=80.09  Aligned_cols=43  Identities=28%  Similarity=0.607  Sum_probs=37.7

Q ss_pred             eeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~  138 (328)
                      ...|+||++.+..|+. .|  ||.||..|+..|    ...||.||.++..
T Consensus       332 ~~~C~ICle~~~~pv~lpC--GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETT--CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCeEEeCC--CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            3789999999999987 99  999999999876    3689999998753

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.78  E-value=2.7e-06  Score=68.80  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=2.1

Q ss_pred             CCCeeeecccccccccc-----------------cc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           91 DPEVLDCPVCYEPLNIP-----------------VY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~P-----------------v~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +.+.-.|+||++.|..+                 +.  .|  ||.|+..|+.+|   ...||.||.++.
T Consensus        45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C--~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CCCC-----------------------------------------------------------------
T ss_pred             cCCCCcCeECChhhcCcChhhhcccccccccccccccCCc--CceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            44556899999999763                 22  57  999999999997   468999998764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.78  E-value=5.2e-06  Score=59.50  Aligned_cols=42  Identities=24%  Similarity=0.603  Sum_probs=35.6

Q ss_pred             eeeecccccccccccc---ccccccE-eccccccccc---CCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY---QCGNGHV-VCHRCCCDLM---NKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~---qC~~GH~-~C~~C~~~~~---~~CP~C~~~~~  137 (328)
                      ...|+||++-.+++++   .|  ||. +|..|..++.   ..||.||+++.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRT--GHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTE--EEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeEEEecCC--CCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3579999999988864   78  998 9999999873   48999999875

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.65  E-value=2.8e-05  Score=57.45  Aligned_cols=51  Identities=22%  Similarity=0.272  Sum_probs=45.4

Q ss_pred             eeeecccCCCCCCcccccchhhhccc-ccccCCCCCCCCCCccccccchHhhhhhhc
Q 020290          151 IQVACENADYGCKEKMSYSEKYDHGR-ACHYTPCSCPLAACNFVGSFHQIYQHFRGV  206 (328)
Q Consensus       151 l~v~C~~~~~GC~~~~~~~~~~~He~-~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~  206 (328)
                      ..|.|++   +|...+...++..|+. .|+++++.|++  |++.+.+.+|..|...+
T Consensus        15 ~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~C~~--C~~~~~~~~l~~H~~~C   66 (76)
T 2yuc_A           15 NVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLKCEF--CGCDFSGEAYESHEGMC   66 (76)
T ss_dssp             SCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCCCSS--SCCCCCHHHHHHTTTSC
T ss_pred             cccCCCc---cccHHhhHhHHHhhCHhhCCCcceECCC--CCCccCHHHHHHHHhHC
Confidence            4688886   8999999999999998 99999999987  99999999999998543

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.63  E-value=1.4e-05  Score=62.24  Aligned_cols=51  Identities=16%  Similarity=0.385  Sum_probs=33.7

Q ss_pred             eeecccCCCCCCcccccchhhhcccccccCCCCCCC--CCCccccccchHhhhhhh
Q 020290          152 QVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPL--AACNFVGSFHQIYQHFRG  205 (328)
Q Consensus       152 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~--~gC~~~g~~~~L~~Hl~~  205 (328)
                      .+.|||   .|...+...+++.|...|+.+.+.|++  .||.+++.+.+|..|++.
T Consensus        37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~   89 (100)
T 2yre_A           37 LIGCPL---VCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEM   89 (100)
T ss_dssp             EEECTT---CCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESSTHHHHHHT
T ss_pred             eeeCCc---ccCCeeehhhHHHHHhhcccccccccccCcCCceeecHHHHHHHHhh
Confidence            566664   466666666666676667776666665  367766666677777664

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.54  E-value=1.8e-05  Score=60.95  Aligned_cols=41  Identities=22%  Similarity=0.617  Sum_probs=32.5

Q ss_pred             Ceeeecccccccccccc----ccccccEecccccccc-----------cCCCCC--CCcC
Q 020290           93 EVLDCPVCYEPLNIPVY----QCGNGHVVCHRCCCDL-----------MNKCPS--CRLP  135 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~----qC~~GH~~C~~C~~~~-----------~~~CP~--C~~~  135 (328)
                      +.+.|+||++.+..|..    .|  ||.||..|+...           ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~C--gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCC--CCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35789999999988864    48  999999999863           126888  8776

>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=2.3e-05  Score=61.13  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=35.9

Q ss_pred             hhhceeeecccCCCCCCcccccchhhhcccccccCCCCCC
Q 020290          147 VIESIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCP  186 (328)
Q Consensus       147 ~l~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP  186 (328)
                      +.-...++|+|+.|||+.++...++..|++.|+-..+.|.
T Consensus        59 ~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas~v~~~   98 (100)
T 2yre_A           59 LCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVSGPS   98 (100)
T ss_dssp             HCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGGCCCCC
T ss_pred             hcccccccccccCcCCceeecHHHHHHHHhhCCceeEecC
Confidence            3456789999999999999999999999999999988874

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.48  E-value=2.2e-05  Score=55.97  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             eeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      |.|||+++++.+||.  .+  ||+|+..|+.+|   ...||..++++.
T Consensus         4 ~~CpIs~~~m~dPV~~~~s--G~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKS--RTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTT--TEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             EEecCCCCCCCCCEEeCCC--CcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            789999999999987  36  999999999997   357999998875

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=97.48  E-value=2.7e-05  Score=57.52  Aligned_cols=47  Identities=17%  Similarity=0.297  Sum_probs=41.1

Q ss_pred             chhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCCCceEEEe
Q 020290          169 SEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAEEFVY  216 (328)
Q Consensus       169 ~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y  216 (328)
                      .+++.|+..|+|+++.||+ +|+....+.+|..|+......+.+...|
T Consensus         3 ~~l~~H~~~C~~~~v~C~~-~C~~~v~r~~l~~H~~~~C~~r~v~C~~   49 (76)
T 2yuc_A            3 SGSSGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEF   49 (76)
T ss_dssp             CSCSCCCCCCCCSCCBCTT-CCSCBCCSSSSTTTTTTSCTTSCCCCSS
T ss_pred             hHHHHHHHHCCCcccCCCc-cccHHhhHhHHHhhCHhhCCCcceECCC
Confidence            5678999999999999996 8999999999999999777777666555

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.39  E-value=4.3e-05  Score=60.58  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             CCCeeeecccccccccc-----------------cc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           91 DPEVLDCPVCYEPLNIP-----------------VY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~P-----------------v~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      +.+.-.|+||++.|..+                 +.  .|  ||.|+..|+.+|   ...||.||..+.
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT--SCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeeccc--CcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            44556799999998865                 22  57  999999999997   468999998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.06  E-value=0.00024  Score=55.27  Aligned_cols=41  Identities=29%  Similarity=0.677  Sum_probs=33.2

Q ss_pred             eecccccccccc--ccccccccEecccccccc----cCCCCCCCcCCCC
Q 020290           96 DCPVCYEPLNIP--VYQCGNGHVVCHRCCCDL----MNKCPSCRLPNGH  138 (328)
Q Consensus        96 ~CpiC~~~l~~P--v~qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~  138 (328)
                      .|++|..+++.-  +..|  .|+||.+|...+    .+.||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPC--kHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPC--KHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETT--CCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccc--cccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            599999998764  2389  999999999765    2589999988764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.97  E-value=0.00014  Score=61.96  Aligned_cols=51  Identities=18%  Similarity=0.273  Sum_probs=45.0

Q ss_pred             ceeeecccCCCCCCcccccchhhhcc-cccccCCCCCCCCCCccccccchHhhhhhhc
Q 020290          150 SIQVACENADYGCKEKMSYSEKYDHG-RACHYTPCSCPLAACNFVGSFHQIYQHFRGV  206 (328)
Q Consensus       150 ~l~v~C~~~~~GC~~~~~~~~~~~He-~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~  206 (328)
                      -..+.|+    ||.+.+...++..|+ ..|+++++.||+  |+......+|..|....
T Consensus       108 ~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~~C~~--C~~~~~~~~l~~H~~~~  159 (170)
T 3hcs_A          108 FALMDCP----QCQRPFQKFHINIHILKDCPRRQVSCDN--CAASMAFEDKEIHDQNC  159 (170)
T ss_dssp             TSEEECT----TTCCEEEGGGHHHHHHHTCTTCEEECTT--TCCEEEGGGHHHHHTTC
T ss_pred             ceeeECC----CCChHHHHHHHHHHhhhhCCCCCeECCC--CCCccCHHHHHhHHHhC
Confidence            3467786    799999999999998 599999999985  99999999999998654

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.86  E-value=0.00021  Score=52.52  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=45.6

Q ss_pred             eeeecccCCCCCCcccccchhhhcccccccCCCCCCCCCCccccccchHhhhhhhccCC
Q 020290          151 IQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKH  209 (328)
Q Consensus       151 l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~  209 (328)
                      -.+.|++    |...+...++..|+..|+.+++.|+.  |+....+.+|..|+..+...
T Consensus        16 r~~~C~~----C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           16 RLAVCQH----CDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCEECSS----SCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTHHHHBTTB
T ss_pred             cccCCcc----cChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHHHHHccCC
Confidence            3577775    99999999999999999999999986  99988899999999875443

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.58  E-value=0.0047  Score=46.13  Aligned_cols=44  Identities=20%  Similarity=0.381  Sum_probs=33.7

Q ss_pred             eeeecccccccc--cccc-cccc---ccEeccccccccc-----CCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLN--IPVY-QCGN---GHVVCHRCCCDLM-----NKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~--~Pv~-qC~~---GH~~C~~C~~~~~-----~~CP~C~~~~~  137 (328)
                      ...|.||++.+.  .++. .|.+   +|.|-..|+.+|.     ..||+|+..+.
T Consensus        15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            457999998763  3544 7843   3999999999982     48999998875

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.54  E-value=0.012  Score=43.31  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             eeeecccccccccccccc-ccccEecccccccc---c--CCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVYQC-GNGHVVCHRCCCDL---M--NKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~qC-~~GH~~C~~C~~~~---~--~~CP~C~~~~~  137 (328)
                      +-.|.||+.++.+- ..| .++|.|=..|+.+|   .  ..||.|+..+.
T Consensus        15 i~~C~IC~~~i~~g-~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           15 VKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SCBCSSSCCBCSSS-EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCcCcchhhHcccC-CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            45799999999743 333 23999989999986   2  58999998765

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=94.06  E-value=0.012  Score=55.62  Aligned_cols=44  Identities=20%  Similarity=0.500  Sum_probs=34.5

Q ss_pred             eeeeccccccccc----cccccc---cccEeccccccccc--------------CCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNI----PVYQCG---NGHVVCHRCCCDLM--------------NKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~----Pv~qC~---~GH~~C~~C~~~~~--------------~~CP~C~~~~~  137 (328)
                      .-.|+||+..+.+    |...|.   +||.|=..|+.+|-              +.||.|++++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            4579999999875    655553   49999999999871              36999998765

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=93.76  E-value=0.022  Score=45.19  Aligned_cols=63  Identities=14%  Similarity=0.162  Sum_probs=41.1

Q ss_pred             hHHhhhceeeecccCCCCCCcccccchhhhc---ccccccCCCCCCCCCCccccccchHhhhhhhccCCC
Q 020290          144 MEKVIESIQVACENADYGCKEKMSYSEKYDH---GRACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHA  210 (328)
Q Consensus       144 le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H---e~~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~  210 (328)
                      +.+.+..-...||.    |...+...++..-   ++.=.-..+.||+.||+|.+...+|..|+..++...
T Consensus        45 i~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~~  110 (118)
T 3hct_A           45 IIKSIRDAGHKCPV----DNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFAL  110 (118)
T ss_dssp             HHHHHHHHCSBCTT----TCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC--
T ss_pred             HHHHHhhCCCCCCC----CCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhhh
Confidence            44444444448886    8777665443211   112223567899899999999999999999887753

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=92.89  E-value=0.062  Score=39.85  Aligned_cols=32  Identities=31%  Similarity=0.711  Sum_probs=27.7

Q ss_pred             Ceeeecccccccccccc-ccc--cccEeccccccc
Q 020290           93 EVLDCPVCYEPLNIPVY-QCG--NGHVVCHRCCCD  124 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~--~GH~~C~~C~~~  124 (328)
                      ..|.|.+|.+-|.+-.| ||+  .+|.||-.|-..
T Consensus        14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~   48 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE   48 (93)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred             CeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence            45899999999999888 998  589999999654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=91.21  E-value=0.39  Score=38.70  Aligned_cols=112  Identities=14%  Similarity=0.158  Sum_probs=65.0

Q ss_pred             Ceeeecccccccccccccc--cc-ccE-----ecccccccccCCCCCCCcCCCCCcch--hhHHhhhceeeecccCCCCC
Q 020290           93 EVLDCPVCYEPLNIPVYQC--GN-GHV-----VCHRCCCDLMNKCPSCRLPNGHSRST--AMEKVIESIQVACENADYGC  162 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~qC--~~-GH~-----~C~~C~~~~~~~CP~C~~~~~~~r~~--~le~~l~~l~v~C~~~~~GC  162 (328)
                      ..+.|++|...|......=  .. -|.     -+..|.   ...|+.|...+.....+  .+..-...-.+.|+.  .+|
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--~~C   98 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF--PGC   98 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC--TTT
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc--CCC
Confidence            3588999999987542200  00 011     011110   14799998877643222  222223334577864  368


Q ss_pred             Cccccc-chhhhccccc-ccCCCCCCCCCCcccccc-chHhhhhhhccCC
Q 020290          163 KEKMSY-SEKYDHGRAC-HYTPCSCPLAACNFVGSF-HQIYQHFRGVHKH  209 (328)
Q Consensus       163 ~~~~~~-~~~~~He~~C-~~~~~~CP~~gC~~~g~~-~~L~~Hl~~~H~~  209 (328)
                      ...+.. ..|..|+..- .-.++.|+..+|+..... ..|..|+...+..
T Consensus        99 ~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            877654 4567887632 345789986679876644 6799999865544

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=90.61  E-value=0.084  Score=41.44  Aligned_cols=76  Identities=13%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             CCCCCCCcCCCC---Ccc------hhhHHhhhceeeecccCCCCCCcccccchhhhc----ccccccCCCCCCCCCCccc
Q 020290          127 NKCPSCRLPNGH---SRS------TAMEKVIESIQVACENADYGCKEKMSYSEKYDH----GRACHYTPCSCPLAACNFV  193 (328)
Q Consensus       127 ~~CP~C~~~~~~---~r~------~~le~~l~~l~v~C~~~~~GC~~~~~~~~~~~H----e~~C~~~~~~CP~~gC~~~  193 (328)
                      ..||+|...+..   ..+      .-+.+.+......||.    |...+...++...    .+.=.-..+.||+.||+|.
T Consensus        24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~----Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~   99 (116)
T 1rmd_A           24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS----CRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEE   99 (116)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT----TCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCE
T ss_pred             CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC----CCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcch
Confidence            357777665432   111      2344555444567886    8877766554321    1122234578998899999


Q ss_pred             cccchHhhhhhhc
Q 020290          194 GSFHQIYQHFRGV  206 (328)
Q Consensus       194 g~~~~L~~Hl~~~  206 (328)
                      +...++..|+..+
T Consensus       100 ~~~~~~~~H~~~C  112 (116)
T 1rmd_A          100 VSLEKYNHHVSSH  112 (116)
T ss_dssp             EEHHHHHHHHHTS
T ss_pred             hhHhHHHHHHHHh
Confidence            9999999999865

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.17  E-value=0.15  Score=35.17  Aligned_cols=52  Identities=17%  Similarity=0.484  Sum_probs=36.3

Q ss_pred             eeecccCCCCCCcccccchhhhcccccccCCCCCCCCCCcccc-ccchHhhhhhhccC
Q 020290          152 QVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPLAACNFVG-SFHQIYQHFRGVHK  208 (328)
Q Consensus       152 ~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~~gC~~~g-~~~~L~~Hl~~~H~  208 (328)
                      .+.|..    |...+....|..|+..+.-.|+.|++ .|+... .+..|..|+.....
T Consensus        10 ~~~C~~----C~k~f~~~~L~~H~~~~~~~p~~C~~-~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A           10 TQPCTY----CTKEFVFDTIQSHQYQCPRLPVACPN-QCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             EEECSS----SCCEEEHHHHHHHHHHCSSSEEECTT-CCSCCEEETTTHHHHHHTTSS
T ss_pred             Ceeccc----cCCccCHHHHHHHHHHcCCcCccCCc-ccCcccccHHHHHHHHHhhcc
Confidence            456664    77776666788888777778889962 487654 45689999876443

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.12  E-value=0.11  Score=39.71  Aligned_cols=30  Identities=27%  Similarity=0.581  Sum_probs=24.8

Q ss_pred             Ceeeeccccc-ccccccc---ccccccEeccccccc
Q 020290           93 EVLDCPVCYE-PLNIPVY---QCGNGHVVCHRCCCD  124 (328)
Q Consensus        93 ~~l~CpiC~~-~l~~Pv~---qC~~GH~~C~~C~~~  124 (328)
                      +.+.|+||.+ ++.+|+.   .|  +|.||..|+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C--~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTC--EVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTT--TEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcC--ChHHhHHHCHH
Confidence            3578999996 4778885   56  99999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.32  E-value=0.12  Score=37.32  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             chhhhccc-ccccCCCCCCCCCCccccccchHhhhhhhccCCCce
Q 020290          169 SEKYDHGR-ACHYTPCSCPLAACNFVGSFHQIYQHFRGVHKHAAE  212 (328)
Q Consensus       169 ~~~~~He~-~C~~~~~~CP~~gC~~~g~~~~L~~Hl~~~H~~~~~  212 (328)
                      .+|..|+. .|+++++.|++  |+......+|..|. .......+
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~--C~~~~~~~~L~~H~-~~c~~~~~   44 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQH--CDLELSILKLKEHE-DYCGARTE   44 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSS--SCCEECHHHHHHHH-HHHHHCEE
T ss_pred             hHHHhhCcccCCCcccCCcc--cChHhhHHHHHHHH-hHcCCCce
Confidence            46789986 89999999976  99888999999998 44443333

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=85.15  E-value=0.35  Score=33.72  Aligned_cols=46  Identities=24%  Similarity=0.491  Sum_probs=30.7

Q ss_pred             CCeeeecccccccccccc-cccccc---Eecccccccc-----cCCCCCCCcCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGH---VVCHRCCCDL-----MNKCPSCRLPNG  137 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH---~~C~~C~~~~-----~~~CP~C~~~~~  137 (328)
                      .+.-.|.||+.-...|.. .|.+.+   .|=..|+.+|     ...||.|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            345679999987665654 775433   3444578876     257999988654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=84.38  E-value=0.54  Score=34.28  Aligned_cols=47  Identities=21%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             CCccccc-chhhhccccccc---CCCCCCCCCCccccc-cchHhhhhhhccCCC
Q 020290          162 CKEKMSY-SEKYDHGRACHY---TPCSCPLAACNFVGS-FHQIYQHFRGVHKHA  210 (328)
Q Consensus       162 C~~~~~~-~~~~~He~~C~~---~~~~CP~~gC~~~g~-~~~L~~Hl~~~H~~~  210 (328)
                      |...+.. ..|..|+..-.-   .++.|+.  |+.... ...|..|+...|...
T Consensus        41 C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           41 CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhCCHHHHHHHHHHhcCCC
Confidence            5554433 335566543222   5788975  887654 467999998888754

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=83.38  E-value=0.42  Score=36.66  Aligned_cols=38  Identities=37%  Similarity=0.841  Sum_probs=29.3

Q ss_pred             eeeccccccccccccccccccEecccccccc--cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL--MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~~CP~C~~~~~  137 (328)
                      ..||+|...|..     ..|+..|..|-...  ...||.|.+++.
T Consensus        33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le   72 (101)
T 2jne_A           33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ   72 (101)
T ss_dssp             CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred             ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH
Confidence            689999998874     23666699998765  368999988764

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3

Probab=80.40  E-value=0.63  Score=35.20  Aligned_cols=45  Identities=20%  Similarity=0.579  Sum_probs=35.7

Q ss_pred             CeeeeccccccccccccccccccEecccccccc-cCCCCCCCcCCC
Q 020290           93 EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL-MNKCPSCRLPNG  137 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~-~~~CP~C~~~~~  137 (328)
                      +=|.|..|..+|....+.=.+|.++|..|..++ ..+|..|.++|.
T Consensus        32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~   77 (101)
T 2cup_A           32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV   77 (101)
T ss_dssp             TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred             cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence            458899999999765443346999999999876 478999988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1k2fa_	190	b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous	1e-23
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	5e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	0.001

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.9 bits (233), Expect = 1e-23
 Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 13/188 (6%)

Query: 150 SIQVACENADYGCKEKMSYSEKYDHGRACHYTP--CSCPLAACNFVGSFHQIYQHFRGVH 207
           S+   C+ A  GC+  + ++EK +H   C + P  C CP A+C + GS   +  H    H
Sbjct: 1   SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQH 60

Query: 208 KHAAEEFVYDKVLRITLS--VHHDLIILQEEKNGDLFILNNSTE-----PDGYRISVNCI 260
           K        D V   T          ++ +   G  F+L    +        +   V  I
Sbjct: 61  KSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLI 120

Query: 261 AP-SCKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPPSVASLLVPSD---FFGSYGQ 316
                     Y +          + +  +SI         +   L+  +     F   G 
Sbjct: 121 GTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGN 180

Query: 317 LHLGVRIQ 324
           L + V I 
Sbjct: 181 LGINVTIS 188

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 91  DPEVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLP 135
           + + L C  C      P       H +C  C      +CP C+ P
Sbjct: 3   EFQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEASGMQCPICQAP 46

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 97  CPVCYEPLNIPVYQCGNGHVVCHRCCCDLM---NKCPSCRLP 135
           CP+C E  +         H  C+ C    +     CP C++P
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 93  EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN------KCPSCRLP---NGHSRSTA 143
           ++L+CP+C E +  PV      H+ C  C   L+N      +CP C+          ST 
Sbjct: 20  KILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78

Query: 144 MEKVIESIQ 152
             +++E + 
Sbjct: 79  FSQLVEELL 87

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 95  LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN----KCPSCRLP 135
           + C +C   L  PV      H+ C  C    +      CPSCR P
Sbjct: 24  ISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYP 67

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 93  EVLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMN-KCPSCRLPNGHS---RSTAMEKVI 148
           ++L C  C   L  PV   G  H+ C  C  D +   CP C  P        +  ++ +I
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMI 80

Query: 149 ESIQ 152
           +   
Sbjct: 81  QLCS 84

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 3e-04
 Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 3/44 (6%)

Query: 95  LDCPVCYEPLNIPVYQCGNGHVVCHRC---CCDLMNKCPSCRLP 135
           + C +  +    PV    +  +                P    P
Sbjct: 1   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEP 44

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 5/43 (11%)

Query: 97  CPVCYEPLNIPVYQCGNGHVVCHRCCCDLM----NKCPSCRLP 135
           C +C E           GH++C  C           CP CR  
Sbjct: 26  CKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCE 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1k2fa_	190	SIAH, seven in absentia homolog {Mouse (Mus muscul	99.97
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.01
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.98
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.95
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.95
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.86
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.84
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.81
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.67
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.51
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.36
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.35
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.21
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.72
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.59
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.43
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.58
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	90.93
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	90.02
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	88.59
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.86
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	86.64
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	85.67
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	84.8
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.9
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	82.71
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.13

>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-31  Score=235.43  Aligned_cols=176  Identities=21%  Similarity=0.318  Sum_probs=142.9

Q ss_pred             ceeeecccCCCCCCcccccchhhhcccccccCCCCCCC--CCCccccccchHhhhhhhccCCCceEEEeCcEEEEEEec-
Q 020290          150 SIQVACENADYGCKEKMSYSEKYDHGRACHYTPCSCPL--AACNFVGSFHQIYQHFRGVHKHAAEEFVYDKVLRITLSV-  226 (328)
Q Consensus       150 ~l~v~C~~~~~GC~~~~~~~~~~~He~~C~~~~~~CP~--~gC~~~g~~~~L~~Hl~~~H~~~~~~f~y~~~~~l~l~~-  226 (328)
                      ++.+||+|+.+||+++++|.++..||+.|.|+|+.||.  .+|+|+|..++|..|+...|++..+.+.++..+...... 
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINL   80 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEEEESSEEEEEECCTTC
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccccCccceEEeeecccc
Confidence            46899999999999999999999999999999977765  569999999999999999999877766676555433221 


Q ss_pred             -CCCEEEEEEecCCcEEEEecccCC----Cc-cEEEEEccCCC-CCCCeeEEEEEeeCCceEEEeeeecccccccCCCCC
Q 020290          227 -HHDLIILQEEKNGDLFILNNSTEP----DG-YRISVNCIAPS-CKGGVVYSIVAKSGGAVYEFNSCTKSIQNWDENNPP  299 (328)
Q Consensus       227 -~~~~~vl~~~~d~~lFll~~~~~~----~g-~~vsV~cIgp~-~a~~f~Y~l~~~~~g~~L~~~s~~~si~~~~~~~~~  299 (328)
                       ...+.|++...++.+|+|+.....    .+ .++.|++|||+ +|.+|.|+|++.+++++|+|++.++++++......+
T Consensus        81 ~~~~~~v~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~~~  160 (190)
T d1k2fa_          81 PGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIM  160 (190)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHHHH
T ss_pred             ccceeEEEEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccccC
Confidence             223444555678899999876532    22 25788999984 578999999999999999999999999874334457


Q ss_pred             CcceeEecCC---ccCCCCceEEEEEEec
Q 020290          300 SVASLLVPSD---FFGSYGQLHLGVRIQH  325 (328)
Q Consensus       300 ~~~fL~VP~~---l~~~~g~l~l~V~I~~  325 (328)
                      +.+||+||..   +|+++|+|+|+|+|+.
T Consensus       161 ~~d~lvi~~~~~~~F~~~g~L~l~v~I~~  189 (190)
T d1k2fa_         161 NSDCLVFDTSIAQLFAENGNLGINVTISM  189 (190)
T ss_dssp             TTCSEEEEHHHHHHHCBTTBEEEEEEEEE
T ss_pred             CCCEEEECHHHHhhcccCCcEEEEEEEEe
Confidence            7899999974   8889999999999984

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=5.2e-11  Score=88.37  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      -|+.|.||||+++|++||. .|  ||+||..|+.++    ...||.|+.++..   .+|.+|+++++++.
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~c--Ghtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l   71 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPS--GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI   71 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSS--CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCccccCcCcCchhhhhcccCC--cCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHH
Confidence            4788999999999999998 88  999999999986    2579999998863   46889999888754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.98  E-value=4.8e-11  Score=88.09  Aligned_cols=59  Identities=20%  Similarity=0.358  Sum_probs=50.1

Q ss_pred             CCCeeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCC---CcchhhHHhhhce
Q 020290           91 DPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH---SRSTAMEKVIESI  151 (328)
Q Consensus        91 ~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~---~r~~~le~~l~~l  151 (328)
                      .++.|.||||+++|.+||. .|  ||+||..|+.++    ...||.|+.++..   .+|.+|+++|+++
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~c--gh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~   71 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVST--GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALW   71 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETT--TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred             CCccCCCcCcCchhhCceEccC--CCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHH
Confidence            4578999999999999998 88  999999999886    2469999998763   4688898888765

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-10  Score=79.81  Aligned_cols=45  Identities=27%  Similarity=0.595  Sum_probs=40.4

Q ss_pred             CCeeeecccccccccccc-ccccccEecccccccccCCCCCCCcCCCC
Q 020290           92 PEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDLMNKCPSCRLPNGH  138 (328)
Q Consensus        92 ~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~~~~CP~C~~~~~~  138 (328)
                      .+.|.|+||++.+.+|+. .|  ||+||..|+.++...||.||+++..
T Consensus         4 ~~~l~C~IC~~~~~~p~~lpC--gH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPKLLPC--LHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTT--SCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cCCCCCcccCcccCCCEEecC--CCHHhHHHHHcCCCcCcCCCCcccC
Confidence            345899999999999988 89  9999999999988899999998764

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-10  Score=89.89  Aligned_cols=57  Identities=28%  Similarity=0.665  Sum_probs=47.2

Q ss_pred             Ceeeecccccccccccc--ccccccEecccccccc-cCCCCCCCcCCC---CCcchhhHHhhhce
Q 020290           93 EVLDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL-MNKCPSCRLPNG---HSRSTAMEKVIESI  151 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~-~~~CP~C~~~~~---~~r~~~le~~l~~l  151 (328)
                      +.|.||||+++|.+|+.  .|  ||+||..|+.+| ...||.|+.++.   ...|..+++++..+
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~C--gH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~   83 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGC--EHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLC   83 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSS--SCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred             hcCCCccCCchhhcCceeCCC--CCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHH
Confidence            35799999999999986  68  999999999987 467999998775   34688888877654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4e-10  Score=86.84  Aligned_cols=62  Identities=15%  Similarity=0.069  Sum_probs=50.6

Q ss_pred             CCCCeeeecccccccccccc-ccccccEecccccccc---cCCCCCCCcCCCC---CcchhhHHhhhcee
Q 020290           90 NDPEVLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---MNKCPSCRLPNGH---SRSTAMEKVIESIQ  152 (328)
Q Consensus        90 ~~~~~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~~~CP~C~~~~~~---~r~~~le~~l~~l~  152 (328)
                      +.|+.|.||||+.+|.+||. .| .||.||..||.+|   ...||.|++++..   ..|.+|+++|+.+.
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~-~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPS-SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTT-TCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred             CCcHHhCCcCchhHHHHHHhccc-ccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHH
Confidence            45778999999999999997 45 1468999999997   4789999999863   47888888887653

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=3.5e-10  Score=85.01  Aligned_cols=42  Identities=36%  Similarity=0.795  Sum_probs=37.7

Q ss_pred             eeeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~  137 (328)
                      .+.||||++++.+|+. .|  ||+||..|+.++    ..+||.||.++.
T Consensus        23 ~l~C~IC~~~~~~pv~~~C--gH~FC~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          23 SISCQICEHILADPVETSC--KHLFCRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HTBCTTTCSBCSSEEECTT--SCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CcCCccCCcchhcceecCC--CChhhHHHHHHHHhhCCCcCcccCCCCC
Confidence            4789999999999988 89  999999999986    257999999876

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.4e-10  Score=87.83  Aligned_cols=62  Identities=31%  Similarity=0.841  Sum_probs=49.0

Q ss_pred             eeeecccccccccccc-ccccccEecccccccc---c---CCCCCCCcCCCC---CcchhhHHhhhce-eeeccc
Q 020290           94 VLDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL---M---NKCPSCRLPNGH---SRSTAMEKVIESI-QVACEN  157 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~---~---~~CP~C~~~~~~---~r~~~le~~l~~l-~v~C~~  157 (328)
                      .|.||||++++..|+. .|  ||+||..|+.+|   .   ..||.|+.++..   ..|..+.++++++ ++.|+.
T Consensus        21 ~l~CpIC~~~~~~pv~~~C--gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~~~~~   93 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKC--DHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICAF   93 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTT--SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHHH
T ss_pred             CcCCCccCchhCCeEEcCC--CCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHHHccc
Confidence            5889999999999987 88  999999999875   1   379999998752   4566667777766 355553

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.6e-09  Score=74.69  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=36.7

Q ss_pred             eeecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      |.|+||++++++||.  .|  ||+||..|+.+|   ...||.|++++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~c--Gh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKS--RTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTT--TEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCCccCCchHHhcCccCCC--CCcccHHHHHHHHhhccCCCccCCcCC
Confidence            579999999999986  69  999999999997   478999999875

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.9e-09  Score=76.91  Aligned_cols=43  Identities=28%  Similarity=0.617  Sum_probs=37.5

Q ss_pred             eeecccccccccccc-ccccccEecccccccc----cCCCCCCCcCCCCC
Q 020290           95 LDCPVCYEPLNIPVY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGHS  139 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~~  139 (328)
                      ..|+||++.+.+|+. .|  ||.||..|+.+|    ...||.||..+...
T Consensus        24 ~~C~IC~~~~~~~~~~~C--gH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPC--GHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBCCEECSSS--CCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCC--CCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            469999999999988 89  999999999886    25799999998643

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.51  E-value=1.5e-08  Score=72.35  Aligned_cols=40  Identities=30%  Similarity=0.764  Sum_probs=35.1

Q ss_pred             eecccccccccccc--ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           96 DCPVCYEPLNIPVY--QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        96 ~CpiC~~~l~~Pv~--qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      .|+||++.+..|++  .|  ||.||..|+.+|   +..||.||.++.
T Consensus         7 ~C~IC~~~~~~~~~~~~C--~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPC--LHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTT--TEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCC--CCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            59999999987754  89  999999999987   478999999875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.9e-08  Score=66.49  Aligned_cols=43  Identities=37%  Similarity=1.003  Sum_probs=33.0

Q ss_pred             eeecccccccccc--c-cccccccEeccccccccc----CCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIP--V-YQCGNGHVVCHRCCCDLM----NKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~P--v-~qC~~GH~~C~~C~~~~~----~~CP~C~~~~~  137 (328)
                      ++||||++.+...  + ..+++||.||..|+.+|.    .+||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            5899999988543  2 233339999999999872    46999999875

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3e-08  Score=70.20  Aligned_cols=44  Identities=32%  Similarity=0.792  Sum_probs=33.9

Q ss_pred             Ceeeeccccccccc-c----cc-ccccccEecccccccc----cCCCCCCCcCCCC
Q 020290           93 EVLDCPVCYEPLNI-P----VY-QCGNGHVVCHRCCCDL----MNKCPSCRLPNGH  138 (328)
Q Consensus        93 ~~l~CpiC~~~l~~-P----v~-qC~~GH~~C~~C~~~~----~~~CP~C~~~~~~  138 (328)
                      |...||||++.+.. |    +. .|  ||.||..|+.+|    ...||.||+++..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C--~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVC--GHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTT--CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCcc--ChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            45789999986532 2    22 68  999999999987    2579999998753

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.21  E-value=2.4e-07  Score=63.21  Aligned_cols=41  Identities=32%  Similarity=0.694  Sum_probs=33.5

Q ss_pred             eeeecccccccccc--cc---ccccccEecccccccc---cCCCCCCCcCC
Q 020290           94 VLDCPVCYEPLNIP--VY---QCGNGHVVCHRCCCDL---MNKCPSCRLPN  136 (328)
Q Consensus        94 ~l~CpiC~~~l~~P--v~---qC~~GH~~C~~C~~~~---~~~CP~C~~~~  136 (328)
                      ...|+||++.+...  +.   .|  ||.||..|+.+|   +..||.||.++
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C--~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRC--GHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSS--CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCeEECccccCCCEEEEeCCC--CCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            45799999999753  32   47  999999999997   47899999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=3.4e-06  Score=65.60  Aligned_cols=43  Identities=30%  Similarity=0.707  Sum_probs=33.2

Q ss_pred             eeeeccccccccccc-------------------cccccccEeccccccccc--------CCCCCCCcCCCC
Q 020290           94 VLDCPVCYEPLNIPV-------------------YQCGNGHVVCHRCCCDLM--------NKCPSCRLPNGH  138 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv-------------------~qC~~GH~~C~~C~~~~~--------~~CP~C~~~~~~  138 (328)
                      .-.|+||++.|..+.                   ..|  ||.||..|+.+|.        .+||.||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~C--gH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC--SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS--CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCC--CChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            457999999886431                   157  9999999999872        269999987653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.59  E-value=9.1e-06  Score=55.90  Aligned_cols=48  Identities=25%  Similarity=0.517  Sum_probs=37.4

Q ss_pred             CCCCeeeecccccccccccc-ccc---cccEecccccccc-----cCCCCCCCcCCC
Q 020290           90 NDPEVLDCPVCYEPLNIPVY-QCG---NGHVVCHRCCCDL-----MNKCPSCRLPNG  137 (328)
Q Consensus        90 ~~~~~l~CpiC~~~l~~Pv~-qC~---~GH~~C~~C~~~~-----~~~CP~C~~~~~  137 (328)
                      ++.+...|+||++.+..+.. .|.   .+|.|+..|+.+|     ..+||.|+.++.
T Consensus         2 eded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45567789999998877654 443   2699999999997     247999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.3e-05  Score=58.11  Aligned_cols=42  Identities=19%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             eeeecccccccccccc-------------------ccccccEecccccccc---cCCCCCCCcCCC
Q 020290           94 VLDCPVCYEPLNIPVY-------------------QCGNGHVVCHRCCCDL---MNKCPSCRLPNG  137 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~-------------------qC~~GH~~C~~C~~~~---~~~CP~C~~~~~  137 (328)
                      .-.|+||++.+..+-.                   .|  ||.|+..|+.+|   +..||+||+++.
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC--NHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT--SCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccc--cCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3459999887754321                   47  999999999997   478999998765

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00019  Score=53.29  Aligned_cols=29  Identities=21%  Similarity=0.629  Sum_probs=23.1

Q ss_pred             eeeccccccccc---ccc-ccccccEecccccccc
Q 020290           95 LDCPVCYEPLNI---PVY-QCGNGHVVCHRCCCDL  125 (328)
Q Consensus        95 l~CpiC~~~l~~---Pv~-qC~~GH~~C~~C~~~~  125 (328)
                      ..|+||++.+..   +.. .|  ||.||..|+..+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C--~H~fC~~Cl~~~   38 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQC--QCIFCTLCLKQY   38 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTT--TEEEEHHHHHHH
T ss_pred             CcCccCCCcccCCceEEECCC--CCEeCCcCHHHH
Confidence            479999998753   333 68  999999999874

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.041  Score=38.01  Aligned_cols=32  Identities=31%  Similarity=0.711  Sum_probs=27.7

Q ss_pred             Ceeeecccccccccccc-ccc--cccEeccccccc
Q 020290           93 EVLDCPVCYEPLNIPVY-QCG--NGHVVCHRCCCD  124 (328)
Q Consensus        93 ~~l~CpiC~~~l~~Pv~-qC~--~GH~~C~~C~~~  124 (328)
                      ..|.|.+|.+-|.+-.| ||+  .+|.||-.|-..
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~   41 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE   41 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHH
Confidence            35899999999999888 998  589999999654

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.02  E-value=0.37  Score=33.44  Aligned_cols=43  Identities=14%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             eeeeccccccccccccccccccEecccccccccCCCCCCCcCC
Q 020290           94 VLDCPVCYEPLNIPVYQCGNGHVVCHRCCCDLMNKCPSCRLPN  136 (328)
Q Consensus        94 ~l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~~  136 (328)
                      .-.|.+|..-+.-..+.|.+|+.||......-...|+..-+..
T Consensus        25 k~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK~~   67 (74)
T d1wfpa_          25 ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGV   67 (74)
T ss_dssp             CCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSC
T ss_pred             CCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcchhc
Confidence            4679999988776567788899999999876556787765544

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.59  E-value=0.13  Score=29.97  Aligned_cols=25  Identities=24%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             CCCCCCCCCCcccccc-chHhhhhhh
Q 020290          181 TPCSCPLAACNFVGSF-HQIYQHFRG  205 (328)
Q Consensus       181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~  205 (328)
                      +|+.|+.+||++...+ ..|..|+..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhh
Confidence            5789999999998865 569999765

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.86  E-value=0.12  Score=29.28  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             CCCCCCCCCCcccccc-chHhhhhhh
Q 020290          181 TPCSCPLAACNFVGSF-HQIYQHFRG  205 (328)
Q Consensus       181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~  205 (328)
                      +|+.|+.+||++...+ ..|..|+..
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            4788999999987755 568888754

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=86.64  E-value=0.12  Score=35.50  Aligned_cols=38  Identities=37%  Similarity=0.841  Sum_probs=30.1

Q ss_pred             eeeccccccccccccccccccEecccccccc--cCCCCCCCcCCC
Q 020290           95 LDCPVCYEPLNIPVYQCGNGHVVCHRCCCDL--MNKCPSCRLPNG  137 (328)
Q Consensus        95 l~CpiC~~~l~~Pv~qC~~GH~~C~~C~~~~--~~~CP~C~~~~~  137 (328)
                      +.||.|...|..     .+||..|..|-...  ...||.|.+++.
T Consensus         3 ~~CP~C~~eL~~-----~~~~~~C~~C~~~~~~~a~CPdC~~~Le   42 (71)
T d2jnea1           3 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ   42 (71)
T ss_dssp             CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred             CcCCCccCcccc-----cCCCEehhhhhhhheeEEeCCccccHHH
Confidence            689999999765     22888999998875  368999988764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.21  Score=28.84  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCcccccc-chHhhhhhh
Q 020290          181 TPCSCPLAACNFVGSF-HQIYQHFRG  205 (328)
Q Consensus       181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~  205 (328)
                      +|+.||.++|+....+ ..|..|+.+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc
Confidence            4789999999987755 579999875

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.80  E-value=1.1  Score=31.76  Aligned_cols=42  Identities=14%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             eeeeccccccccc-cccccccccEecccccccccCCCCCCCcC
Q 020290           94 VLDCPVCYEPLNI-PVYQCGNGHVVCHRCCCDLMNKCPSCRLP  135 (328)
Q Consensus        94 ~l~CpiC~~~l~~-Pv~qC~~GH~~C~~C~~~~~~~CP~C~~~  135 (328)
                      .-.|.+|..-+.- -.++|.+|+.||......-...|+..-+.
T Consensus        25 ~~RC~~C~KKl~l~~~~~CrCg~~FC~~HR~pe~H~CtfDyK~   67 (85)
T d1wffa_          25 MKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKS   67 (85)
T ss_dssp             CCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSS
T ss_pred             CCcChhcCCeecCCcCeecCCCCEehhhcCCCcCcCCCcchHH
Confidence            3579999998864 23578889999999987655678776544

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=0.27  Score=28.13  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCcccccc-chHhhhhhh
Q 020290          181 TPCSCPLAACNFVGSF-HQIYQHFRG  205 (328)
Q Consensus       181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~  205 (328)
                      +|+.|+.+||+....+ ..|..|+..
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc
Confidence            4788999999987765 568899764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.71  E-value=0.21  Score=28.42  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=19.2

Q ss_pred             CCCCCCCCCCcccccc-chHhhhhhh
Q 020290          181 TPCSCPLAACNFVGSF-HQIYQHFRG  205 (328)
Q Consensus       181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~  205 (328)
                      +|+.|+.+||++...+ ..|..|+..
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            4778999999987755 568888753

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.29  Score=27.97  Aligned_cols=25  Identities=24%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             CCCCCCCCCCcccccc-chHhhhhhh
Q 020290          181 TPCSCPLAACNFVGSF-HQIYQHFRG  205 (328)
Q Consensus       181 ~~~~CP~~gC~~~g~~-~~L~~Hl~~  205 (328)
                      +|+.|+.++|+..... ..|..|+..
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI   26 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccc
Confidence            4778999999987755 569999864